The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 7 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.004 0.004 0.117   0.1   4.5
2  0.332 0.332 0.159   3.1   7.4
3  0.423 0.423 0.693   4.5   8.6
4  0.573 0.573 0.683   7.4  10.1
5  0.258 0.258 0.315   8.7  11.7
6  0.116 0.116 0.402  10.1  13.2
7  0.102 0.102 0.649  11.7  14.9
8  0.152 0.152 0.651  13.2  16.5
9  0.324 0.324 0.446  14.9  17.9
10 0.599 0.599 0.485  16.5  19.7
11 0.781 0.781 0.193  17.9  21.3
12 0.299 0.300 0.295  19.7  22.6
13 0.153 0.153 0.603  21.3  24.3
14 0.327 0.327 0.503  22.6  25.6
15 0.101 0.101 0.161  24.3  27.6
16 0.007 0.007 0.454  25.6  29.1
17 0.023 0.023 0.388  27.6  30.8
18 0.539 0.539 0.740  29.1  32.2
19 0.836 0.836 0.919  30.8  34.1
20 0.476 0.476 0.823  32.2  36.1
21 0.167 0.167 0.072  34.1  37.6
22 0.003 0.003 0.088  36.1  39.2
23 0.064 0.064 0.154  37.6  41.5
24 0.497 0.497 0.731  39.2  43.3
25 0.413 0.413 0.572  41.5  46.0
26 0.330 0.330 0.576  43.3  47.5
27 0.076 0.076 0.232  46.0  49.3
28 0.019 0.019 0.116  47.5  51.0
29 0.261 0.261 0.809  49.3  52.6
30 0.317 0.317 0.499  51.0  54.5
31 0.228 0.228 0.248  52.6  56.7
32 0.192 0.192 0.470  54.5  65.8
33 0.076 0.076 0.298  56.7  68.0
34 0.103 0.103 0.322  65.8  70.3
35 0.685 0.685 0.220  68.0  75.1
36 0.904 0.904 0.450  70.3  77.9
37 0.478 0.478 0.421  75.1  79.8
38 0.332 0.332 0.483  77.9  81.9
39 0.462 0.462 0.412  79.8  84.1
40 0.106 0.106 0.315  81.9  87.0
41 0.199 0.199 0.457  84.1  89.5
42 0.541 0.541 0.362  87.0  92.0
43 0.223 0.223 0.519  89.5  94.8
44 0.175 0.175 0.069  92.1  97.0
45 0.269 0.269 0.107  94.8 101.0
46 0.599 0.600 0.440  97.0 103.9
47 0.313 0.313 0.276 101.0 105.7
48 0.524 0.524 0.616 103.9 107.8
49 0.656 0.656 0.598 105.7 110.2
50 0.202 0.202 0.619 107.8 112.8
51 0.205 0.205 0.776 110.2 116.0
52 0.060 0.060 0.657 112.9 119.8
53 0.062 0.062 0.597 116.0 122.6
54 0.345 0.345 0.706 119.8 125.2
55 0.104 0.104 0.004 122.6 127.3
56 0.070 0.070 0.010 125.2 130.2
57 0.061 0.061 0.026 127.3 131.9
58 0.002 0.002 0.018 130.2 134.1
59 0.032 0.032 0.016 131.9 136.1
60 0.126 0.126 0.344 134.1 138.2
61 0.133 0.133 0.278 136.1 140.8
62 0.326 0.326 0.170 138.2 143.1
63 0.433 0.433 0.390 140.8 145.9
64 0.249 0.249 0.497 143.1 147.5
65 0.290 0.290 0.629 145.9 150.1
66 0.560 0.561 0.904 147.5 152.5
67 0.374 0.374 0.752 150.1 154.1
68 0.257 0.257 0.628 152.5 155.7
69 0.237 0.238 0.129 154.1 157.6
70 0.570 0.570 0.090 154.9 158.8

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum     1  0.004   0.1   4.5
2     sum    16  0.007  25.6  29.1
3     sum    17  0.023  27.6  30.8
4     sum    22  0.003  36.1  39.2
5     sum    28  0.019  47.5  51.0
6     sum    58  0.002 130.2 134.1
7     sum    59  0.032 131.9 136.1
8    mean     1  0.004   0.1   4.5
9    mean    16  0.007  25.6  29.1
10   mean    17  0.023  27.6  30.8
11   mean    22  0.003  36.1  39.2
12   mean    28  0.019  47.5  51.0
13   mean    58  0.002 130.2 134.1
14   mean    59  0.032 131.9 136.1
15    max    55  0.004 122.6 127.3
16    max    56  0.010 125.2 130.2
17    max    57  0.026 127.3 131.9
18    max    58  0.018 130.2 134.1
19    max    59  0.016 131.9 136.1