Chromosome 8
Benazir
February 22, 2018
The true phenotype
The results below correspond to the sum of posterior inclusion probabilities for chr 8 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.
Pvalues for 1000 simulations
Below are pvalues for sum mean max start as well as boundaries of each chunk
sum mean max start end
1 0.196 0.196 0.131 0.2 2.9
2 0.495 0.495 0.083 1.6 3.6
3 0.020 0.020 0.070 2.9 4.2
4 0.006 0.006 0.033 3.6 5.1
5 0.008 0.008 0.033 4.2 5.8
6 0.309 0.309 0.081 5.1 6.7
7 0.359 0.359 0.906 5.8 8.9
8 0.061 0.061 0.678 6.7 10.2
9 0.234 0.234 0.665 8.9 11.3
10 0.465 0.465 0.143 10.2 13.3
11 0.510 0.510 0.235 11.3 14.5
12 0.851 0.851 0.798 13.3 15.8
13 0.781 0.781 0.700 14.5 17.4
14 0.661 0.661 0.361 15.8 18.4
15 0.370 0.370 0.091 17.4 19.5
16 0.082 0.083 0.076 18.4 20.7
17 0.055 0.055 0.107 19.5 22.5
18 0.101 0.101 0.083 20.8 24.4
19 0.382 0.382 0.014 22.5 26.0
20 0.678 0.679 0.010 24.4 27.4
21 0.942 0.942 0.799 26.0 29.4
22 0.859 0.859 0.358 27.4 31.7
23 0.589 0.589 0.593 29.4 33.7
24 0.424 0.424 0.770 31.7 37.0
25 0.198 0.199 0.929 33.7 40.2
26 0.176 0.176 0.590 37.0 42.0
27 0.163 0.163 0.422 40.2 50.4
28 0.210 0.210 0.437 42.0 53.1
29 0.112 0.112 0.183 50.4 55.4
30 0.000 0.000 0.003 53.1 57.4
31 0.013 0.013 0.007 55.4 59.3
32 0.185 0.185 0.821 57.4 61.7
33 0.423 0.424 0.350 59.3 63.5
34 0.022 0.022 0.155 61.7 66.3
35 0.007 0.007 0.283 63.5 69.2
36 0.105 0.105 0.563 66.3 71.1
37 0.117 0.117 0.253 69.2 73.2
38 0.072 0.072 0.235 71.1 74.8
39 0.422 0.422 0.250 73.2 77.3
40 0.730 0.730 0.828 74.8 80.0
41 0.977 0.978 0.281 77.3 82.5
42 0.515 0.515 0.747 80.0 85.3
43 0.016 0.016 0.392 82.5 88.7
44 0.007 0.007 0.296 85.3 91.3
45 0.042 0.042 0.682 88.7 94.4
46 0.612 0.612 0.941 91.3 96.4
47 0.232 0.233 0.208 94.4 98.0
48 0.179 0.179 0.010 96.4 101.1
49 0.995 0.995 0.029 98.0 103.0
50 0.983 0.984 0.970 101.1 105.3
51 0.139 0.139 0.385 103.0 107.5
52 0.129 0.129 0.407 105.3 109.3
53 0.163 0.163 0.409 107.5 112.1
54 0.115 0.115 0.426 109.3 115.3
55 0.069 0.069 0.081 112.1 117.9
56 0.023 0.023 0.117 115.3 119.6
57 0.560 0.560 0.313 117.9 121.5
58 0.795 0.795 0.187 119.6 123.6
59 0.517 0.517 0.566 121.5 125.3
60 0.114 0.114 0.632 123.6 127.1
61 0.431 0.431 0.482 125.3 128.7
62 0.937 0.938 0.160 127.1 130.4
63 0.891 0.891 0.071 128.7 132.0
64 0.715 0.715 0.524 130.4 133.5
65 0.229 0.229 0.275 132.0 134.8
66 0.355 0.355 0.329 133.5 136.1
67 0.276 0.276 0.464 134.8 137.9
68 0.499 0.499 0.447 136.1 139.3
69 0.705 0.705 0.021 137.9 140.5
70 0.921 0.921 0.014 139.3 142.4
71 0.001 0.001 0.023 140.6 146.2
72 0.005 0.005 0.046 140.6 146.3Pvalues for 1000 simulations exceeding 0.05 confidence level
Below are the chunks whose p-values are below 0.05 in the corresponding category.
metric chunk pvalue start end
1 sum 3 0.020 2.9 4.2
2 sum 4 0.006 3.6 5.1
3 sum 5 0.008 4.2 5.8
4 sum 30 0.000 53.1 57.4
5 sum 31 0.013 55.4 59.3
6 sum 34 0.022 61.7 66.3
7 sum 35 0.007 63.5 69.2
8 sum 43 0.016 82.5 88.7
9 sum 44 0.007 85.3 91.3
10 sum 45 0.042 88.7 94.4
11 sum 56 0.023 115.3 119.6
12 sum 71 0.001 140.6 146.2
13 sum 72 0.005 140.6 146.3
14 mean 3 0.020 2.9 4.2
15 mean 4 0.006 3.6 5.1
16 mean 5 0.008 4.2 5.8
17 mean 30 0.000 53.1 57.4
18 mean 31 0.013 55.4 59.3
19 mean 34 0.022 61.7 66.3
20 mean 35 0.007 63.5 69.2
21 mean 43 0.016 82.5 88.7
22 mean 44 0.007 85.3 91.3
23 mean 45 0.042 88.7 94.4
24 mean 56 0.023 115.3 119.6
25 mean 71 0.001 140.6 146.2
26 mean 72 0.005 140.6 146.3
27 max 4 0.033 3.6 5.1
28 max 5 0.033 4.2 5.8
29 max 19 0.014 22.5 26.0
30 max 20 0.010 24.4 27.4
31 max 30 0.003 53.1 57.4
32 max 31 0.007 55.4 59.3
33 max 48 0.010 96.4 101.1
34 max 49 0.029 98.0 103.0
35 max 69 0.021 137.9 140.5
36 max 70 0.014 139.3 142.4
37 max 71 0.023 140.6 146.2
38 max 72 0.046 140.6 146.3