The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 9 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.061 0.061 0.086   0.0   2.0
2  0.096 0.096 0.080   1.2   3.0
3  0.360 0.360 0.288   2.0   4.2
4  0.117 0.117 0.277   3.0   5.7
5  0.383 0.383 0.699   4.2   7.2
6  0.538 0.540 0.533   5.8   8.2
7  0.477 0.477 0.834   7.2   9.4
8  0.412 0.412 0.713   8.2  10.7
9  0.438 0.439 0.656   9.4  12.6
10 0.192 0.192 0.724  10.7  14.1
11 0.002 0.002 0.040  12.6  15.6
12 0.010 0.010 0.032  14.1  16.9
13 0.141 0.141 0.613  15.6  18.3
14 0.047 0.047 0.548  16.9  19.6
15 0.019 0.019 0.337  18.3  21.2
16 0.021 0.021 0.002  19.6  23.2
17 0.288 0.288 0.003  21.2  25.3
18 0.274 0.274 0.631  23.2  27.2
19 0.004 0.004 0.104  25.3  28.6
20 0.033 0.033 0.139  27.2  30.6
21 0.603 0.603 0.867  28.6  32.6
22 0.221 0.221 0.370  30.6  34.9
23 0.000 0.000 0.270  32.6  37.4
24 0.000 0.000 0.134  34.9  70.4
25 0.440 0.440 0.173  37.4  71.9
26 0.025 0.025 0.187  70.4  73.6
27 0.011 0.011 0.182  71.9  76.1
28 0.209 0.209 0.379  73.6  77.9
29 0.080 0.080 0.577  76.1  79.3
30 0.178 0.178 0.414  77.9  81.2
31 0.050 0.050 0.149  79.3  82.8
32 0.000 0.000 0.138  81.2  85.0
33 0.034 0.034 0.098  82.8  86.6
34 0.774 0.774 0.751  85.0  88.5
35 0.243 0.243 0.229  86.6  90.0
36 0.090 0.090 0.156  88.5  91.8
37 0.058 0.058 0.237  90.0  93.3
38 0.066 0.066 0.270  91.8  95.4
39 0.245 0.245 0.307  93.3  97.6
40 0.399 0.399 0.665  95.4 100.1
41 0.373 0.374 0.371  97.6 102.1
42 0.202 0.202 0.504 100.1 103.9
43 0.052 0.052 0.547 102.1 105.7
44 0.057 0.057 0.369 103.9 107.2
45 0.092 0.092 0.051 105.7 109.1
46 0.145 0.145 0.200 107.2 110.4
47 0.246 0.246 0.020 109.2 111.7
48 0.247 0.247 0.033 110.4 113.0
49 0.436 0.436 0.838 111.7 115.0
50 0.187 0.187 0.676 113.0 116.5
51 0.049 0.049 0.326 115.0 118.2
52 0.045 0.045 0.076 116.5 119.4
53 0.137 0.137 0.041 118.2 121.0
54 0.080 0.080 0.214 119.4 122.8
55 0.135 0.135 0.276 121.0 125.2
56 0.019 0.019 0.328 122.8 128.1
57 0.012 0.013 0.378 125.2 131.2
58 0.078 0.078 0.428 128.1 133.7
59 0.049 0.049 0.358 131.2 135.8
60 0.828 0.828 0.360 133.7 137.8
61 0.631 0.631 0.391 134.6 140.1

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum    11  0.002  12.6  15.6
2     sum    12  0.010  14.1  16.9
3     sum    14  0.047  16.9  19.6
4     sum    15  0.019  18.3  21.2
5     sum    16  0.021  19.6  23.2
6     sum    19  0.004  25.3  28.6
7     sum    20  0.033  27.2  30.6
8     sum    23  0.000  32.6  37.4
9     sum    24  0.000  34.9  70.4
10    sum    26  0.025  70.4  73.6
11    sum    27  0.011  71.9  76.1
12    sum    32  0.000  81.2  85.0
13    sum    33  0.034  82.8  86.6
14    sum    51  0.049 115.0 118.2
15    sum    52  0.045 116.5 119.4
16    sum    56  0.019 122.8 128.1
17    sum    57  0.012 125.2 131.2
18    sum    59  0.049 131.2 135.8
19   mean    11  0.002  12.6  15.6
20   mean    12  0.010  14.1  16.9
21   mean    14  0.047  16.9  19.6
22   mean    15  0.019  18.3  21.2
23   mean    16  0.021  19.6  23.2
24   mean    19  0.004  25.3  28.6
25   mean    20  0.033  27.2  30.6
26   mean    23  0.000  32.6  37.4
27   mean    24  0.000  34.9  70.4
28   mean    26  0.025  70.4  73.6
29   mean    27  0.011  71.9  76.1
30   mean    32  0.000  81.2  85.0
31   mean    33  0.034  82.8  86.6
32   mean    51  0.049 115.0 118.2
33   mean    52  0.045 116.5 119.4
34   mean    56  0.019 122.8 128.1
35   mean    57  0.013 125.2 131.2
36   mean    59  0.049 131.2 135.8
37    max    11  0.040  12.6  15.6
38    max    12  0.032  14.1  16.9
39    max    16  0.002  19.6  23.2
40    max    17  0.003  21.2  25.3
41    max    47  0.020 109.2 111.7
42    max    48  0.033 110.4 113.0
43    max    53  0.041 118.2 121.0