–

The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 10 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.465 0.465 0.527   0.1   3.0
2  0.542 0.543 0.213   1.9   4.1
3  0.287 0.287 0.114   3.0   5.3
4  0.175 0.175 0.505   4.1   6.8
5  0.100 0.100 0.245   5.3   8.0
6  0.091 0.091 0.384   6.8   9.3
7  0.123 0.123 0.361   8.0  10.8
8  0.277 0.277 0.629   9.3  12.4
9  0.316 0.316 0.101  10.8  13.7
10 0.331 0.331 0.113  12.4  14.8
11 0.352 0.352 0.919  13.7  16.5
12 0.446 0.446 0.462  14.8  18.4
13 0.771 0.771 0.147  16.5  19.8
14 0.190 0.190 0.597  18.4  21.2
15 0.365 0.365 0.748  19.8  24.1
16 0.104 0.104 0.502  21.2  25.9
17 0.143 0.143 0.757  24.1  27.9
18 0.152 0.152 0.635  25.9  29.5
19 0.143 0.143 0.679  27.9  30.8
20 0.136 0.136 0.507  29.5  32.9
21 0.149 0.149 0.256  30.8  34.6
22 0.038 0.038 0.312  32.9  36.9
23 0.174 0.174 0.253  34.6  43.0
24 0.355 0.355 0.339  36.9  44.6
25 0.240 0.241 0.424  43.0  49.5
26 0.347 0.347 0.263  44.6  51.8
27 0.116 0.116 0.611  49.5  53.5
28 0.143 0.143 0.556  51.8  55.1
29 0.519 0.519 0.052  53.5  57.2
30 0.626 0.626 0.076  55.1  59.2
31 0.174 0.174 0.237  57.2  61.2
32 0.021 0.021 0.080  59.2  63.0
33 0.178 0.178 0.670  61.2  65.1
34 0.017 0.017 0.052  63.0  67.2
35 0.003 0.003 0.030  65.1  68.7
36 0.002 0.002 0.049  67.2  71.2
37 0.037 0.037 0.453  68.7  72.5
38 0.360 0.360 0.961  71.2  75.5
39 0.305 0.305 0.896  72.5  78.0
40 0.787 0.787 0.083  75.5  79.6
41 0.156 0.156 0.127  78.0  80.9
42 0.135 0.135 0.213  79.6  83.3
43 0.054 0.054 0.377  80.9  85.1
44 0.008 0.008 0.205  83.3  86.5
45 0.126 0.126 0.048  85.1  88.1
46 0.860 0.860 0.014  86.5  90.6
47 0.867 0.867 0.139  88.2  92.3
48 0.194 0.194 0.064  90.6  94.9
49 0.165 0.165 0.309  92.3  97.1
50 0.065 0.065 0.096  94.9  98.9
51 0.068 0.068 0.095  97.1 101.0
52 0.394 0.395 0.735  98.9 103.4
53 0.029 0.029 0.054 101.1 106.4
54 0.032 0.032 0.016 103.4 108.3
55 0.201 0.201 0.220 106.5 109.9
56 0.170 0.170 0.356 108.3 112.3
57 0.244 0.244 0.506 109.9 113.8
58 0.587 0.587 0.475 112.3 115.5
59 0.165 0.165 0.537 113.8 117.8
60 0.193 0.193 0.461 115.5 119.5
61 0.134 0.134 0.748 117.8 121.3
62 0.171 0.171 0.641 119.5 122.8
63 0.117 0.117 0.702 121.3 124.1
64 0.587 0.587 0.893 122.8 125.6
65 0.989 0.989 0.961 124.1 127.7
66 0.013 0.013 0.041 125.6 128.9
67 0.000 0.000 0.138 127.7 130.2
68 0.038 0.039 0.228 128.9 131.5
69 0.023 0.023 0.089 130.2 132.7
70 0.048 0.048 0.204 131.5 134.5
71 0.152 0.152 0.552 131.9 135.3

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum    22  0.038  32.9  36.9
2     sum    32  0.021  59.2  63.0
3     sum    34  0.017  63.0  67.2
4     sum    35  0.003  65.1  68.7
5     sum    36  0.002  67.2  71.2
6     sum    37  0.037  68.7  72.5
7     sum    44  0.008  83.3  86.5
8     sum    53  0.029 101.1 106.4
9     sum    54  0.032 103.4 108.3
10    sum    66  0.013 125.6 128.9
11    sum    67  0.000 127.7 130.2
12    sum    68  0.038 128.9 131.5
13    sum    69  0.023 130.2 132.7
14    sum    70  0.048 131.5 134.5
15   mean    22  0.038  32.9  36.9
16   mean    32  0.021  59.2  63.0
17   mean    34  0.017  63.0  67.2
18   mean    35  0.003  65.1  68.7
19   mean    36  0.002  67.2  71.2
20   mean    37  0.037  68.7  72.5
21   mean    44  0.008  83.3  86.5
22   mean    53  0.029 101.1 106.4
23   mean    54  0.032 103.4 108.3
24   mean    66  0.013 125.6 128.9
25   mean    67  0.000 127.7 130.2
26   mean    68  0.039 128.9 131.5
27   mean    69  0.023 130.2 132.7
28   mean    70  0.048 131.5 134.5
29    max    35  0.030  65.1  68.7
30    max    36  0.049  67.2  71.2
31    max    45  0.048  85.1  88.1
32    max    46  0.014  86.5  90.6
33    max    54  0.016 103.4 108.3
34    max    66  0.041 125.6 128.9