–

The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 11 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.405 0.405 0.735   0.2   5.0
2  0.812 0.813 0.976   3.3   6.3
3  0.910 0.910 0.934   5.0   7.7
4  0.581 0.581 0.837   6.3   9.7
5  0.512 0.512 0.451   7.7  11.2
6  0.325 0.325 0.488   9.7  12.2
7  0.217 0.217 0.768  11.2  13.6
8  0.171 0.171 0.173  12.2  15.8
9  0.023 0.023 0.275  13.6  17.9
10 0.009 0.009 0.102  15.8  19.6
11 0.166 0.166 0.151  17.9  20.8
12 0.263 0.263 0.251  19.6  22.4
13 0.438 0.438 0.294  20.8  24.4
14 0.334 0.334 0.754  22.4  26.2
15 0.195 0.195 0.480  24.4  28.6
16 0.303 0.303 0.387  26.2  31.1
17 0.739 0.739 0.691  28.6  33.7
18 0.881 0.881 0.473  31.1  35.1
19 0.267 0.267 0.343  33.7  36.4
20 0.111 0.111 0.601  35.1  38.9
21 0.113 0.113 0.627  36.4  41.2
22 0.644 0.644 0.606  38.9  43.0
23 0.428 0.428 0.287  41.3  44.7
24 0.116 0.116 0.387  43.0  47.1
25 0.655 0.655 0.223  44.7  55.4
26 0.928 0.928 0.556  47.2  57.8
27 0.343 0.343 0.412  55.4  60.3
28 0.249 0.249 0.198  57.8  63.5
29 0.329 0.330 0.600  60.3  68.6
30 0.314 0.314 0.828  63.5  70.7
31 0.188 0.188 0.608  68.6  73.9
32 0.282 0.283 0.142  70.7  76.2
33 0.091 0.091 0.162  73.9  78.5
34 0.180 0.180 0.548  76.2  79.8
35 0.059 0.059 0.493  78.5  81.3
36 0.431 0.431 0.889  79.8  83.3
37 0.711 0.711 0.679  81.3  85.6
38 0.643 0.644 0.754  83.3  87.3
39 0.745 0.745 0.949  85.6  89.8
40 0.246 0.246 0.366  87.3  91.7
41 0.032 0.032 0.302  89.8  93.7
42 0.037 0.037 0.346  91.7  95.3
43 0.733 0.733 0.443  93.7  97.3
44 0.067 0.067 0.294  95.3  99.0
45 0.000 0.000 0.034  97.3 100.6
46 0.359 0.359 0.017  99.0 102.5
47 0.995 0.995 0.537 100.6 104.4
48 0.789 0.789 0.469 102.5 106.6
49 0.544 0.544 0.651 104.4 109.2
50 0.915 0.915 0.750 106.6 111.1
51 0.024 0.024 0.031 109.2 112.9
52 0.014 0.014 0.030 111.1 114.6
53 0.099 0.099 0.470 112.9 116.1
54 0.111 0.111 0.380 114.6 117.7
55 0.652 0.652 0.504 116.1 120.0
56 0.395 0.395 0.411 117.7 121.6
57 0.042 0.042 0.309 120.0 123.2
58 0.031 0.031 0.246 121.6 124.9
59 0.034 0.034 0.211 123.2 126.3
60 0.293 0.293 0.380 124.9 127.9
61 0.086 0.086 0.191 126.3 129.7
62 0.004 0.004 0.266 127.9 131.0
63 0.000 0.000 0.188 129.7 132.2
64 0.003 0.003 0.114 131.0 133.8
65 0.008 0.008 0.061 131.7 134.4

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum     9  0.023  13.6  17.9
2     sum    10  0.009  15.8  19.6
3     sum    41  0.032  89.8  93.7
4     sum    42  0.037  91.7  95.3
5     sum    45  0.000  97.3 100.6
6     sum    51  0.024 109.2 112.9
7     sum    52  0.014 111.1 114.6
8     sum    57  0.042 120.0 123.2
9     sum    58  0.031 121.6 124.9
10    sum    59  0.034 123.2 126.3
11    sum    62  0.004 127.9 131.0
12    sum    63  0.000 129.7 132.2
13    sum    64  0.003 131.0 133.8
14    sum    65  0.008 131.7 134.4
15   mean     9  0.023  13.6  17.9
16   mean    10  0.009  15.8  19.6
17   mean    41  0.032  89.8  93.7
18   mean    42  0.037  91.7  95.3
19   mean    45  0.000  97.3 100.6
20   mean    51  0.024 109.2 112.9
21   mean    52  0.014 111.1 114.6
22   mean    57  0.042 120.0 123.2
23   mean    58  0.031 121.6 124.9
24   mean    59  0.034 123.2 126.3
25   mean    62  0.004 127.9 131.0
26   mean    63  0.000 129.7 132.2
27   mean    64  0.003 131.0 133.8
28   mean    65  0.008 131.7 134.4
29    max    45  0.034  97.3 100.6
30    max    46  0.017  99.0 102.5
31    max    51  0.031 109.2 112.9
32    max    52  0.030 111.1 114.6