–

The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 12 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.050 0.050 0.054   0.1   3.8
2  0.309 0.309 0.291   2.2   5.2
3  0.744 0.744 0.164   3.8   6.5
4  0.248 0.248 0.507   5.2   9.6
5  0.031 0.031 0.115   6.5  11.7
6  0.003 0.003 0.248   9.6  13.3
7  0.025 0.025 0.306  11.7  15.0
8  0.555 0.555 0.253  13.3  17.4
9  0.367 0.367 0.158  15.0  19.7
10 0.126 0.126 0.351  17.4  21.5
11 0.226 0.226 0.198  19.7  23.8
12 0.396 0.396 0.410  21.5  25.3
13 0.247 0.247 0.534  23.8  26.9
14 0.113 0.113 0.311  25.3  28.8
15 0.067 0.067 0.359  26.9  30.2
16 0.116 0.116 0.210  28.8  31.8
17 0.567 0.567 0.593  30.2  33.5
18 0.539 0.539 0.826  31.8  38.9
19 0.126 0.126 0.311  33.5  40.7
20 0.060 0.060 0.239  38.9  42.8
21 0.401 0.401 0.596  40.7  45.6
22 0.194 0.194 0.346  42.8  47.6
23 0.179 0.179 0.219  45.6  50.9
24 0.289 0.289 0.602  47.6  52.6
25 0.421 0.421 0.626  50.9  55.7
26 0.297 0.297 0.623  52.6  58.1
27 0.281 0.281 0.500  55.7  60.7
28 0.258 0.258 0.064  58.1  63.2
29 0.463 0.463 0.133  60.8  65.5
30 0.888 0.888 0.838  63.2  66.9
31 0.590 0.590 0.841  65.5  68.7
32 0.327 0.327 0.795  66.9  70.6
33 0.761 0.761 0.942  68.7  73.3
34 0.742 0.743 0.778  70.6  75.7
35 0.631 0.631 0.751  73.3  77.4
36 0.856 0.856 0.561  75.7  80.1
37 0.825 0.825 0.979  77.4  82.6
38 0.686 0.686 0.533  80.1  85.8
39 0.576 0.576 0.194  82.6  88.7
40 0.055 0.055 0.207  85.8  90.9
41 0.087 0.087 0.509  88.7  92.8
42 0.492 0.492 0.394  90.9  94.3
43 0.549 0.549 0.396  92.8  96.0
44 0.453 0.453 0.631  94.3  97.7
45 0.007 0.007 0.266  96.0 100.0
46 0.053 0.053 0.592  97.7 102.0
47 0.787 0.787 0.058 100.0 103.5
48 0.520 0.520 0.048 102.0 104.9
49 0.727 0.727 0.957 103.5 106.7
50 0.354 0.354 0.673 104.9 108.6
51 0.364 0.364 0.505 106.7 112.6
52 0.915 0.915 0.628 108.6 113.9
53 0.538 0.538 0.021 112.6 115.1
54 0.230 0.230 0.020 113.9 116.7
55 0.039 0.039 0.242 115.1 118.5
56 0.024 0.024 0.214 116.7 122.3
57 0.076 0.076 0.649 118.5 124.5
58 0.055 0.055 0.546 122.3 125.8
59 0.364 0.364 0.947 124.5 127.1
60 0.168 0.168 0.185 125.8 128.4
61 0.215 0.215 0.247 127.1 129.6
62 0.211 0.211 0.220 128.4 132.0
63 0.073 0.073 0.389 128.5 132.3

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue start   end
1     sum     5  0.031   6.5  11.7
2     sum     6  0.003   9.6  13.3
3     sum     7  0.025  11.7  15.0
4     sum    45  0.007  96.0 100.0
5     sum    55  0.039 115.1 118.5
6     sum    56  0.024 116.7 122.3
7    mean     5  0.031   6.5  11.7
8    mean     6  0.003   9.6  13.3
9    mean     7  0.025  11.7  15.0
10   mean    45  0.007  96.0 100.0
11   mean    55  0.039 115.1 118.5
12   mean    56  0.024 116.7 122.3
13    max    48  0.048 102.0 104.9
14    max    53  0.021 112.6 115.1
15    max    54  0.020 113.9 116.7