Chromosome 2
Benazir
January 24, 2018
–
The true phenotype
The results below correspond to the sum of posterior inclusion probabilities for chr 2 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.
Pvalues for 1000 simulations
Below are pvalues for sum mean max start as well as boundaries of each chunk
sum mean max start end
1 0.355 0.355 0.694 0.0 3.7
2 0.058 0.058 0.604 1.9 5.3
3 0.404 0.404 0.759 3.7 6.5
4 0.693 0.694 0.731 5.3 8.0
5 0.433 0.433 0.515 6.6 9.8
6 0.651 0.651 0.411 8.0 11.4
7 0.434 0.434 0.271 9.8 12.8
8 0.833 0.833 0.865 11.4 14.8
9 0.860 0.860 0.517 12.8 16.5
10 0.770 0.770 0.487 14.8 18.3
11 0.123 0.123 0.149 16.6 19.8
12 0.136 0.136 0.219 18.3 21.5
13 0.100 0.100 0.149 19.8 23.7
14 0.007 0.007 0.150 21.5 26.8
15 0.071 0.071 0.693 23.7 29.4
16 0.236 0.236 0.874 26.8 31.0
17 0.248 0.248 0.082 29.4 33.5
18 0.961 0.961 0.043 31.0 35.1
19 0.148 0.148 0.230 33.5 36.6
20 0.027 0.027 0.202 35.1 38.2
21 0.315 0.315 0.298 36.6 40.2
22 0.355 0.355 0.378 38.2 41.7
23 0.146 0.146 0.140 40.2 43.2
24 0.317 0.317 0.241 41.7 45.0
25 0.463 0.463 0.395 43.2 46.1
26 0.733 0.733 0.644 45.0 47.6
27 0.613 0.613 0.408 46.1 49.5
28 0.499 0.499 0.497 47.6 51.3
29 0.207 0.207 0.447 49.5 53.1
30 0.026 0.026 0.052 51.3 54.7
31 0.095 0.095 0.051 53.1 56.4
32 0.195 0.195 0.647 54.7 58.9
33 0.125 0.125 0.385 56.4 60.4
34 0.083 0.083 0.017 58.9 64.1
35 0.036 0.036 0.016 60.4 65.9
36 0.727 0.727 0.682 64.1 67.6
37 0.958 0.958 0.199 65.9 69.2
38 0.287 0.287 0.313 67.6 71.2
39 0.165 0.165 0.580 69.2 74.1
40 0.408 0.408 0.713 71.2 76.0
41 0.327 0.327 0.906 74.1 78.1
42 0.223 0.223 0.726 76.0 79.8
43 0.158 0.158 0.408 78.1 81.8
44 0.268 0.268 0.528 79.8 84.7
45 0.631 0.631 0.533 81.8 88.2
46 0.074 0.074 0.074 84.7 99.2
47 0.089 0.089 0.173 88.2 101.2
48 0.293 0.293 0.413 99.2 103.3
49 0.172 0.172 0.511 101.2 105.6
50 0.568 0.568 0.148 103.3 107.2
51 0.119 0.119 0.052 105.6 111.2
52 0.123 0.123 0.050 107.2 113.6
53 0.144 0.144 0.240 111.2 116.2
54 0.039 0.039 0.361 113.6 118.6
55 0.076 0.076 0.446 116.2 120.6
56 0.261 0.261 0.483 118.6 123.0
57 0.193 0.193 0.345 120.6 124.8
58 0.404 0.404 0.141 123.0 127.2
59 0.422 0.422 0.523 124.8 129.3
60 0.645 0.645 0.181 127.2 132.9
61 0.364 0.364 0.145 129.3 134.4
62 0.407 0.407 0.485 132.9 136.9
63 0.777 0.777 0.589 134.4 139.1
64 0.174 0.174 0.285 137.0 141.2
65 0.008 0.008 0.347 139.1 143.0
66 0.035 0.035 0.185 141.2 145.9
67 0.112 0.112 0.336 143.0 149.3
68 0.296 0.296 0.632 145.9 151.6
69 0.457 0.457 0.621 149.3 153.6
70 0.186 0.186 0.495 151.6 156.1
71 0.168 0.168 0.742 153.6 159.0
72 0.096 0.096 0.431 156.1 160.9
73 0.101 0.101 0.449 159.0 164.1
74 0.069 0.069 0.479 160.9 166.8
75 0.070 0.070 0.159 164.1 169.1
76 0.114 0.114 0.127 166.8 170.9
77 0.196 0.196 0.302 169.1 173.2
78 0.349 0.349 0.700 170.9 175.3
79 0.318 0.318 0.841 173.2 177.5
80 0.327 0.327 0.833 175.3 179.9
81 0.635 0.635 0.548 177.5 181.7
82 0.037 0.037 0.099 179.9 184.3
83 0.093 0.093 0.069 181.7 187.9
84 0.459 0.459 0.613 184.3 191.1
85 0.259 0.259 0.570 187.9 194.4
86 0.058 0.058 0.558 191.2 197.6
87 0.225 0.225 0.405 194.4 200.6
88 0.040 0.040 0.184 197.6 203.3
89 0.275 0.275 0.412 200.7 205.7
90 0.841 0.841 0.990 203.3 207.7
91 0.401 0.401 0.247 205.7 210.2
92 0.443 0.443 0.225 207.7 212.6
93 0.392 0.392 0.512 210.2 215.0
94 0.117 0.117 0.410 212.6 216.9
95 0.001 0.001 0.006 215.0 218.5
96 0.061 0.061 0.007 216.9 220.9
97 0.405 0.405 0.389 218.5 222.7
98 0.408 0.408 0.501 220.9 224.6
99 0.219 0.219 0.221 222.7 226.6
100 0.179 0.179 0.341 224.6 228.6
101 0.173 0.173 0.575 226.7 230.8
102 0.104 0.104 0.588 228.6 233.2
103 0.064 0.064 0.482 230.8 234.9
104 0.020 0.020 0.320 233.2 236.3
105 0.005 0.005 0.007 234.9 238.2
106 0.012 0.012 0.006 236.3 240.2
107 0.120 0.120 0.744 238.2 242.7Pvalues for 1000 simulations exceeding 0.05 confidence level
Below are the chunks whose p-values are below 0.05 in the corresponding category.
metric chunk pvalue
1 sum 14 0.007
2 sum 20 0.027
3 sum 30 0.026
4 sum 35 0.036
5 sum 54 0.039
6 sum 65 0.008
7 sum 66 0.035
8 sum 82 0.037
9 sum 88 0.040
10 sum 95 0.001
11 sum 104 0.020
12 sum 105 0.005
13 sum 106 0.012
14 mean 14 0.007
15 mean 20 0.027
16 mean 30 0.026
17 mean 35 0.036
18 mean 54 0.039
19 mean 65 0.008
20 mean 66 0.035
21 mean 82 0.037
22 mean 88 0.040
23 mean 95 0.001
24 mean 104 0.020
25 mean 105 0.005
26 mean 106 0.012
27 max 18 0.043
28 max 34 0.017
29 max 35 0.016
30 max 95 0.006
31 max 96 0.007
32 max 105 0.007
33 max 106 0.006