The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 13 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.072 0.072 0.331  18.1  22.0
2  0.154 0.154 0.417  20.6  23.5
3  0.013 0.013 0.060  22.0  24.9
4  0.013 0.013 0.050  23.5  26.5
5  0.267 0.267 0.548  25.0  28.2
6  0.193 0.193 0.643  26.5  29.6
7  0.245 0.245 0.794  28.2  31.1
8  0.024 0.024 0.038  29.6  32.7
9  0.018 0.018 0.054  31.1  35.0
10 0.083 0.083 0.079  32.7  36.7
11 0.045 0.045 0.075  35.0  38.4
12 0.163 0.163 0.217  36.7  39.9
13 0.189 0.189 0.293  38.4  42.1
14 0.221 0.221 0.714  39.9  43.7
15 0.111 0.111 0.554  42.1  45.8
16 0.020 0.020 0.561  43.7  47.4
17 0.037 0.037 0.386  45.8  50.1
18 0.517 0.517 0.302  47.4  52.4
19 0.050 0.050 0.619  50.1  54.7
20 0.018 0.018 0.438  52.4  58.2
21 0.321 0.321 0.584  54.7  60.2
22 0.709 0.709 0.546  58.2  62.6
23 0.516 0.516 0.735  60.2  65.4
24 0.550 0.550 0.130  62.6  68.0
25 0.353 0.353 0.329  65.4  70.1
26 0.220 0.220 0.657  68.0  71.9
27 0.105 0.105 0.255  70.1  73.5
28 0.142 0.142 0.236  71.9  75.3
29 0.684 0.684 0.822  73.5  77.0
30 0.626 0.626 0.820  75.3  78.9
31 0.207 0.207 0.879  77.0  81.2
32 0.352 0.352 0.303  78.9  83.9
33 0.507 0.507 0.120  81.2  85.9
34 0.741 0.741 0.186  83.9  88.9
35 0.878 0.878 0.483  85.9  91.0
36 0.808 0.808 0.333  88.9  92.9
37 0.350 0.350 0.355  91.0  94.5
38 0.027 0.027 0.101  92.9  96.8
39 0.860 0.860 0.127  94.5  98.4
40 0.832 0.832 0.056  96.8 100.4
41 0.001 0.001 0.027  98.4 101.6
42 0.069 0.069 0.032 100.4 103.0
43 0.718 0.718 0.390 101.6 104.5
44 0.205 0.205 0.500 103.0 105.9
45 0.500 0.500 0.441 104.5 107.5
46 0.482 0.482 0.702 105.9 108.8
47 0.414 0.414 0.705 107.5 110.0
48 0.081 0.081 0.649 108.8 112.1
49 0.061 0.061 0.542 109.9 114.1

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     3  0.013
2     sum     4  0.013
3     sum     8  0.024
4     sum     9  0.018
5     sum    11  0.045
6     sum    16  0.020
7     sum    17  0.037
8     sum    20  0.018
9     sum    38  0.027
10    sum    41  0.001
11   mean     3  0.013
12   mean     4  0.013
13   mean     8  0.024
14   mean     9  0.018
15   mean    11  0.045
16   mean    16  0.020
17   mean    17  0.037
18   mean    20  0.018
19   mean    38  0.027
20   mean    41  0.001
21    max     8  0.038
22    max    41  0.027
23    max    42  0.032