The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 14 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.877 0.877 0.780  19.3  22.6
2  0.937 0.937 0.893  21.2  24.5
3  0.707 0.707 0.637  22.6  26.5
4  0.921 0.921 0.302  24.5  29.3
5  0.004 0.004 0.004  26.5  31.9
6  0.000 0.000 0.004  29.3  33.2
7  0.025 0.025 0.079  31.9  35.5
8  0.109 0.109 0.084  33.2  37.4
9  0.209 0.209 0.599  35.5  39.9
10 0.209 0.209 0.215  37.4  42.1
11 0.619 0.619 0.878  39.9  44.9
12 0.614 0.614 0.925  42.1  47.5
13 0.637 0.637 0.939  45.0  50.1
14 0.565 0.565 0.210  47.5  51.5
15 0.684 0.684 0.289  50.1  53.4
16 0.515 0.515 0.860  51.5  55.5
17 0.169 0.169 0.268  53.4  57.1
18 0.046 0.046 0.025  55.5  58.8
19 0.092 0.092 0.027  57.1  61.4
20 0.230 0.230 0.141  58.8  63.6
21 0.084 0.084 0.160  61.4  65.8
22 0.259 0.259 0.150  63.6  68.3
23 0.396 0.396 0.234  65.8  70.3
24 0.230 0.230 0.491  68.3  72.0
25 0.278 0.278 0.271  70.3  74.5
26 0.103 0.103 0.338  72.0  76.4
27 0.048 0.048 0.291  74.5  77.9
28 0.121 0.121 0.122  76.4  79.8
29 0.111 0.111 0.066  77.9  82.3
30 0.162 0.162 0.047  79.8  84.3
31 0.288 0.288 0.219  82.3  86.4
32 0.006 0.006 0.092  84.3  88.6
33 0.000 0.000 0.096  86.4  90.6
34 0.016 0.016 0.172  88.6  92.5
35 0.068 0.068 0.211  90.6  94.2
36 0.179 0.179 0.200  92.5  95.4
37 0.713 0.713 0.845  94.2  97.1
38 0.787 0.787 0.965  95.4  98.3
39 0.382 0.382 0.032  97.1 100.2
40 0.212 0.212 0.041  98.3 102.9
41 0.291 0.291 0.055  99.1 106.4

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     5  0.004
2     sum     6  0.000
3     sum     7  0.025
4     sum    18  0.046
5     sum    27  0.048
6     sum    32  0.006
7     sum    33  0.000
8     sum    34  0.016
9    mean     5  0.004
10   mean     6  0.000
11   mean     7  0.025
12   mean    18  0.046
13   mean    27  0.048
14   mean    32  0.006
15   mean    33  0.000
16   mean    34  0.016
17    max     5  0.004
18    max     6  0.004
19    max    18  0.025
20    max    19  0.027
21    max    30  0.047
22    max    39  0.032
23    max    40  0.041