The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 15 data aggregated into overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start   end
1  0.226 0.226 0.513  18.4  24.8
2  0.444 0.444 0.463  23.1  27.5
3  0.158 0.158 0.921  24.8  30.2
4  0.013 0.013 0.053  27.5  31.8
5  0.016 0.016 0.046  30.2  33.9
6  0.265 0.265 0.702  31.8  35.6
7  0.313 0.313 0.538  33.9  37.4
8  0.652 0.652 0.391  35.6  40.1
9  0.184 0.184 0.413  37.4  44.0
10 0.013 0.013 0.323  40.1  45.8
11 0.148 0.148 0.192  44.0  48.3
12 0.690 0.690 0.960  45.8  50.8
13 0.470 0.470 0.586  48.3  52.3
14 0.382 0.382 0.230  50.8  54.5
15 0.192 0.192 0.213  52.3  56.3
16 0.092 0.092 0.081  54.5  58.0
17 0.043 0.043 0.169  56.3  59.3
18 0.074 0.074 0.609  58.0  60.8
19 0.307 0.307 0.352  59.4  63.6
20 0.559 0.559 0.049  60.8  65.7
21 0.063 0.063 0.038  63.6  68.0
22 0.261 0.261 0.346  65.7  69.8
23 0.664 0.664 0.848  68.0  74.0
24 0.533 0.533 0.196  69.8  77.0
25 0.302 0.302 0.020  74.0  78.4
26 0.197 0.197 0.068  77.0  80.3
27 0.037 0.037 0.283  78.4  83.9
28 0.001 0.001 0.137  80.3  85.2
29 0.000 0.000 0.077  83.9  86.9
30 0.013 0.013 0.094  85.2  89.2
31 0.548 0.548 0.205  86.9  90.6
32 0.528 0.528 0.420  89.2  91.8
33 0.357 0.357 0.235  90.6  93.3
34 0.971 0.971 0.153  91.8  94.8
35 0.949 0.949 0.244  93.3  96.7
36 0.117 0.117 0.230  94.8  98.3
37 0.065 0.065 0.520  96.7  99.7
38 0.077 0.077 0.473  97.1 100.2

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     4  0.013
2     sum     5  0.016
3     sum    10  0.013
4     sum    17  0.043
5     sum    27  0.037
6     sum    28  0.001
7     sum    29  0.000
8     sum    30  0.013
9    mean     4  0.013
10   mean     5  0.016
11   mean    10  0.013
12   mean    17  0.043
13   mean    27  0.037
14   mean    28  0.001
15   mean    29  0.000
16   mean    30  0.013
17    max     5  0.046
18    max    20  0.049
19    max    21  0.038
20    max    25  0.020