The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 16 data aggregated into 15 overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start  end
1  0.012 0.012 0.028  14.4 20.7
2  0.014 0.014 0.026  17.4 23.7
3  0.404 0.404 0.255  20.7 25.3
4  0.042 0.042 0.181  23.7 26.3
5  0.014 0.014 0.224  25.3 29.2
6  0.178 0.178 0.501  26.3 31.5
7  0.141 0.141 0.381  29.2 33.0
8  0.667 0.667 0.484  31.5 34.6
9  0.983 0.983 0.303  33.0 37.4
10 0.023 0.023 0.276  34.6 41.6
11 0.060 0.060 0.246  37.4 43.4
12 1.000 1.000 0.799  41.6 45.5
13 1.000 1.000 0.842  43.4 47.0
14 0.390 0.390 0.036  45.5 48.3
15 0.032 0.032 0.086   0.0 49.6
16 0.004 0.004 0.158   0.0 49.6
17 0.012 0.012 0.328   3.1  6.3
18 0.068 0.068 0.237   5.5  7.2
19 0.038 0.038 0.105   6.3  8.0
20 0.117 0.117 0.131   7.2  9.2
21 0.498 0.498 0.872   8.0 10.2
22 0.391 0.391 0.670   9.2 11.7
23 0.605 0.605 0.785  10.2 13.0
24 0.074 0.074 0.493  11.7 14.5
25 0.023 0.023 0.519  13.0 17.8
26 0.033 0.033 0.627  14.5 20.6
27 0.045 0.045 0.436  17.8 24.0
28 0.207 0.207 0.568  20.6 25.9
29 0.218 0.218 0.701  24.0 27.2
30 0.240 0.240 0.694  25.9 46.1
31 0.472 0.472 0.296  27.2 48.7
32 0.880 0.880 0.169  46.2 50.6
33 0.148 0.148 0.595  48.7 52.6
34 0.037 0.037 0.119  50.6 54.0
35 0.007 0.007 0.112  52.6 55.9
36 0.093 0.093 0.274  54.0 57.9
37 0.492 0.492 0.603  55.9 60.3
38 0.685 0.685 0.568  57.9 62.8
39 0.508 0.508 0.601  60.3 64.5
40 0.273 0.273 0.465  62.8 67.8
41 0.250 0.250 0.177  64.5 71.4
42 0.300 0.300 0.283  67.8 73.2
43 0.071 0.071 0.270  71.4 75.3
44 0.029 0.029 0.147  73.2 76.3
45 0.209 0.209 0.189  75.3 77.2
46 0.658 0.658 0.888  76.3 78.0
47 0.774 0.774 0.848  77.2 78.9
48 0.534 0.534 0.402  78.0 80.1
49 0.097 0.097 0.624  78.9 81.2
50 0.128 0.128 0.425  80.1 81.8
51 0.353 0.353 0.261  81.2 82.6
52 0.825 0.825 0.694  81.9 83.9
53 0.672 0.672 0.851  82.6 85.0
54 0.278 0.278 0.562  83.9 86.3
55 0.012 0.012 0.147  84.8 88.7

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     1  0.012
2     sum     2  0.014
3     sum     4  0.042
4     sum     5  0.014
5     sum    10  0.023
6     sum    15  0.032
7     sum    16  0.004
8     sum    17  0.012
9     sum    19  0.038
10    sum    25  0.023
11    sum    26  0.033
12    sum    27  0.045
13    sum    34  0.037
14    sum    35  0.007
15    sum    44  0.029
16    sum    55  0.012
17   mean     1  0.012
18   mean     2  0.014
19   mean     4  0.042
20   mean     5  0.014
21   mean    10  0.023
22   mean    15  0.032
23   mean    16  0.004
24   mean    17  0.012
25   mean    19  0.038
26   mean    25  0.023
27   mean    26  0.033
28   mean    27  0.045
29   mean    34  0.037
30   mean    35  0.007
31   mean    44  0.029
32   mean    55  0.012
33    max     1  0.028
34    max     2  0.026
35    max    14  0.036