The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 17 data aggregated into 15 overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start  end
1  0.426 0.426 0.653   0.0  5.5
2  0.403 0.403 0.672   3.0  7.4
3  0.493 0.493 0.611   5.5  9.7
4  0.548 0.548 0.317   7.4 11.3
5  0.243 0.243 0.499   9.7 13.2
6  0.108 0.108 0.298  11.3 14.6
7  0.408 0.408 0.050  13.2 17.2
8  0.121 0.121 0.024  14.6 21.9
9  0.149 0.149 0.173  17.2 26.9
10 0.326 0.326 0.305  21.9 28.9
11 0.604 0.604 0.911  26.9 29.9
12 0.230 0.230 0.102  28.9 32.7
13 0.122 0.122 0.124  30.0 36.4
14 0.182 0.182 0.820  32.7 40.1
15 0.206 0.206 0.537  36.4 43.5
16 0.389 0.389 0.761  40.2 46.3
17 0.220 0.220 0.401  43.5 48.2
18 0.347 0.347 0.415  46.3 50.6
19 0.841 0.841 0.711  48.2 52.2
20 0.121 0.121 0.237  50.6 54.6
21 0.101 0.101 0.218  52.2 59.5
22 0.191 0.191 0.566  54.6 62.0
23 0.946 0.946 0.016  59.5 64.3
24 0.999 0.999 0.013  62.0 66.3
25 0.826 0.826 0.625  64.3 67.9
26 0.616 0.616 0.644  66.3 69.5
27 0.715 0.715 0.090  67.9 72.4
28 0.462 0.462 0.162  69.5 74.4
29 0.587 0.587 0.395  72.4 76.9
30 0.789 0.790 0.288  73.2 78.6

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

  metric chunk pvalue
1    max     8  0.024
2    max    23  0.016
3    max    24  0.013