The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 18 data aggregated into 15 overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start  end
1  0.835 0.835 0.695   0.0  3.4
2  0.304 0.304 0.506   1.7  5.1
3  0.005 0.005 0.177   3.4  6.7
4  0.001 0.001 0.123   5.1  8.4
5  0.082 0.082 0.772   6.7  9.8
6  0.627 0.627 0.766   8.4 11.0
7  0.716 0.716 0.882   9.8 13.2
8  0.480 0.480 0.310  11.0 18.3
9  0.441 0.441 0.318  13.2 20.4
10 0.362 0.362 0.246  18.3 22.4
11 0.027 0.027 0.116  20.4 24.4
12 0.089 0.089 0.107  22.4 26.6
13 0.140 0.140 0.734  24.4 28.6
14 0.005 0.005 0.040  26.6 31.6
15 0.000 0.000 0.012  28.6 33.6
16 0.034 0.034 0.009  31.6 35.9
17 0.374 0.374 0.789  33.6 38.2
18 0.174 0.174 0.673  35.9 40.5
19 0.073 0.073 0.390  38.2 42.2
20 0.022 0.022 0.509  40.5 44.1
21 0.064 0.064 0.620  42.2 45.9
22 0.339 0.339 0.830  44.1 47.8
23 0.218 0.218 0.013  45.9 49.7
24 0.213 0.213 0.029  47.8 52.1
25 0.230 0.230 0.291  49.7 53.9
26 0.456 0.456 0.427  52.1 55.3
27 0.810 0.810 0.835  53.9 57.2
28 0.692 0.692 0.148  55.3 59.1
29 0.423 0.423 0.204  57.2 61.0
30 0.218 0.218 0.099  59.1 63.3
31 0.036 0.036 0.345  61.0 65.1
32 0.037 0.037 0.590  63.3 67.1
33 0.032 0.032 0.060  65.1 68.8
34 0.025 0.025 0.053  67.1 70.2
35 0.107 0.107 0.069  68.8 71.8
36 0.297 0.297 0.076  70.2 73.2
37 0.217 0.217 0.052  71.8 74.7
38 0.084 0.084 0.026  72.5 76.1

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     3  0.005
2     sum     4  0.001
3     sum    11  0.027
4     sum    14  0.005
5     sum    15  0.000
6     sum    16  0.034
7     sum    20  0.022
8     sum    31  0.036
9     sum    32  0.037
10    sum    33  0.032
11    sum    34  0.025
12   mean     3  0.005
13   mean     4  0.001
14   mean    11  0.027
15   mean    14  0.005
16   mean    15  0.000
17   mean    16  0.034
18   mean    20  0.022
19   mean    31  0.036
20   mean    32  0.037
21   mean    33  0.032
22   mean    34  0.025
23    max    14  0.040
24    max    15  0.012
25    max    16  0.009
26    max    23  0.013
27    max    24  0.029
28    max    38  0.026