The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 19 data aggregated into 15 overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start  end
1  0.310 0.310 0.690   0.2  8.6
2  0.579 0.579 0.651   5.4 12.3
3  0.424 0.424 0.096   8.6 15.7
4  0.000 0.000 0.079  12.3 19.3
5  0.000 0.000 0.155  15.7 22.6
6  0.015 0.015 0.128  19.3 33.8
7  0.829 0.829 0.971  22.7 35.6
8  0.734 0.734 0.444  33.8 37.7
9  0.224 0.224 0.391  35.6 40.1
10 0.414 0.414 0.421  37.7 44.0
11 0.588 0.588 0.098  40.1 48.2
12 0.225 0.225 0.079  44.0 51.5
13 0.042 0.042 0.245  48.2 55.4
14 0.050 0.050 0.009  51.5 57.5
15 0.560 0.560 0.016  55.4 59.9
16 0.181 0.181 0.712  57.5 62.1
17 0.164 0.164 0.839  59.1 63.8

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     4  0.000
2     sum     5  0.000
3     sum     6  0.015
4     sum    13  0.042
5    mean     4  0.000
6    mean     5  0.000
7    mean     6  0.015
8    mean    13  0.042
9     max    14  0.009
10    max    15  0.016