The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 20 data aggregated into 15 overlapping chunks containing 1000 SNPs each. The report is also available at http://rpubs.com/Benazir/.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start  end
1  0.000 0.000 0.045   0.0  2.7
2  0.009 0.009 0.119   1.4  4.5
3  0.608 0.608 0.624   2.7  6.0
4  0.224 0.224 0.835   4.6  7.5
5  0.281 0.281 0.773   6.0  8.9
6  0.392 0.392 0.583   7.5 10.3
7  0.447 0.447 0.659   8.9 11.9
8  0.215 0.215 0.296  10.3 13.2
9  0.051 0.051 0.270  11.9 15.3
10 0.018 0.018 0.038  13.2 16.3
11 0.377 0.377 0.041  15.3 17.5
12 0.199 0.199 0.102  16.3 19.1
13 0.043 0.043 0.255  17.5 20.3
14 0.043 0.043 0.633  19.1 22.7
15 0.500 0.500 0.531  20.3 24.1
16 0.991 0.991 0.304  22.7 29.9
17 0.812 0.812 0.796  24.1 33.5
18 0.569 0.569 0.426  29.9 36.7
19 0.264 0.264 0.846  33.5 38.6
20 0.159 0.159 0.546  36.7 40.3
21 0.069 0.069 0.508  38.6 41.9
22 0.129 0.129 0.670  40.3 43.8
23 0.475 0.475 0.939  41.9 45.6
24 0.688 0.688 0.865  43.8 47.4
25 0.724 0.724 0.833  45.6 49.5
26 0.679 0.679 0.812  47.4 51.2
27 0.192 0.192 0.062  49.5 52.8
28 0.031 0.031 0.094  51.2 54.3
29 0.323 0.323 0.096  52.8 55.7
30 0.778 0.778 0.828  54.3 57.2
31 0.268 0.268 0.242  55.7 58.5
32 0.023 0.023 0.481  57.2 59.7
33 0.013 0.013 0.461  58.4 62.4

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     1  0.000
2     sum     2  0.009
3     sum    10  0.018
4     sum    13  0.043
5     sum    14  0.043
6     sum    28  0.031
7     sum    32  0.023
8     sum    33  0.013
9    mean     1  0.000
10   mean     2  0.009
11   mean    10  0.018
12   mean    13  0.043
13   mean    14  0.043
14   mean    28  0.031
15   mean    32  0.023
16   mean    33  0.013
17    max     1  0.045
18    max    10  0.038
19    max    11  0.041