The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 21 data aggregated into 15 overlapping chunks containing 1000 SNPs each. The report is also available at http://rmarkdown.rstudio.com.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start  end
1  0.047 0.047 0.075  10.0 18.3
2  0.041 0.041 0.331  15.8 19.9
3  0.061 0.061 0.203  18.3 21.8
4  0.502 0.502 0.916  19.9 23.7
5  0.383 0.383 0.179  21.8 25.5
6  0.128 0.128 0.227  23.7 27.1
7  0.214 0.214 0.364  25.5 28.7
8  0.227 0.227 0.346  27.1 30.5
9  0.428 0.428 0.241  28.7 32.4
10 0.697 0.697 0.451  30.5 34.5
11 0.999 0.999 0.038  32.4 36.0
12 0.984 0.984 0.047  34.5 38.0
13 0.550 0.550 0.159  36.0 39.3
14 0.314 0.314 0.246  38.0 40.5
15 0.688 0.688 0.298  39.3 41.8
16 0.320 0.320 0.630  40.5 43.2
17 0.053 0.053 0.463  41.8 45.5
18 0.193 0.193 0.771  42.7 46.9

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

  metric chunk pvalue
1    sum     1  0.047
2    sum     2  0.041
3   mean     1  0.047
4   mean     2  0.041
5    max    11  0.038
6    max    12  0.047