The true phenotype

The results below correspond to the sum of posterior inclusion probabilities for chr 22 data aggregated into 15 overlapping chunks containing 1000 SNPs each. The report is also available at http://rmarkdown.rstudio.com.

Pvalues for 1000 simulations

Below are pvalues for sum mean max start as well as boundaries of each chunk

     sum  mean   max start  end
1  0.011 0.011 0.022  14.4 20.7
2  0.036 0.036 0.034  17.4 23.7
3  0.442 0.442 0.462  20.7 25.3
4  0.029 0.029 0.240  23.7 26.3
5  0.018 0.018 0.260  25.3 29.2
6  0.146 0.146 0.396  26.3 31.5
7  0.268 0.268 0.825  29.2 33.0
8  0.794 0.794 0.386  31.5 34.6
9  0.988 0.988 0.356  33.0 37.4
10 0.024 0.024 0.209  34.6 41.6
11 0.012 0.012 0.237  37.4 43.4
12 0.344 0.344 0.498  41.6 45.5
13 0.529 0.529 0.399  43.4 47.0
14 0.246 0.246 0.042  45.5 48.3
15 0.195 0.195 0.048  46.1 49.6

Pvalues for 1000 simulations exceeding 0.05 confidence level

Below are the chunks whose p-values are below 0.05 in the corresponding category.

   metric chunk pvalue
1     sum     1  0.011
2     sum     2  0.036
3     sum     4  0.029
4     sum     5  0.018
5     sum    10  0.024
6     sum    11  0.012
7    mean     1  0.011
8    mean     2  0.036
9    mean     4  0.029
10   mean     5  0.018
11   mean    10  0.024
12   mean    11  0.012
13    max     1  0.022
14    max     2  0.034
15    max    14  0.042
16    max    15  0.048