Data

Spatial distribution of phenotypes from

C:/Users/the/Desktop/DATA_Transformation_Scripts/Split/TF11072016__RWSurv10242016-1-5 repeat_HP_IM3_2_[29288.9,12291.2]_cell_seg_data.txt

Selected phenotype and expression levels

  • DC
  • CD20

First-order statistics

All cells

Number of cells: 7092 
Average intensity: 0.02 cells per square micron
Frequency and intensity per phenotype:
       frequency proportion intensity
               7      0.001     0.000
CD20         982      0.138     0.003
CD3         5482      0.773     0.015
CD33         145      0.020     0.000
CD56          34      0.005     0.000
DC           200      0.028     0.001
Others       242      0.034     0.001

Selected phenotypes only

Number of cells: 1182 
Average intensity: 0.00327 cells per square micron
Frequency and intensity per phenotype:
     frequency proportion intensity
DC         200      0.169  0.000553
CD20       982      0.831  0.002710

Cell and phenotype locations

All cells

Selected phenotypes only

Nearest neighbors, selected phenotypes

Spatial statistics

Second-order statistics for selected phenotypes - F function

F is the empty space function. It is the cumulative distribution of the distance from any location to the nearest cell of the specified phenotype.

Second-order statistics for selected phenotypes - G function

G shows the distribution of nearest neigbors. It is the cumulative distribution function of the distance from a typical cell to its nearest neighbor.

Pair correlation and cross-correlation for selected phenotypes

Pair correlation summarizes the relative density of cells at a distance other cells of the same type. Cross-correlation summarizes the relative density of cells of one type from cells of a second type.