Title: MSH surveys over posterior - Phylogenetic D statistic
Name: Tammy L. Elliott
Date: March 23, 2017
R version 3.1
Phylo.D scores for temporal survey comparison
MSH.survey.comparison.phylo.D
## Mean Mean-CI Mean+CI n
## Both 0.8397877 0.8391997 0.8403757 415
## Not found 0.7086612 0.7074947 0.7098278 70
## Additions 0.8519431 0.8513372 0.8525489 198
Temporal comparison - are D values significanatly different than 1 for temporal survey?
MSH.survey.comparison.Pval1
## Mean Mean-CI Mean+CI n
## Both 0.00001 -9.599640e-06 2.959964e-05 415
## Not found 0.00000 0.000000e+00 0.000000e+00 70
## Additions 0.00015 7.966272e-05 2.203373e-04 198
Temporal comparison - are D values significanatly different than 0 for temporal survey?
MSH.survey.comparison.Pval0
## Mean Mean-CI Mean+CI n
## Both 0 0 0 415
## Not found 0 0 0 70
## Additions 0 0 0 198
Phylo.D scores for different conservation category groupings
MSH.conservation.comparison.phylo.D
## Mean Mean-CI Mean+CI n
## Non-susceptible 0.8960151 0.8947446 0.8972856 588
## Vulnerable 0.7617994 0.7574704 0.7661284 7
## Susceptible 0.9481484 0.9466860 0.9496108 16
## Menaced 1.3905389 1.3691658 1.4119120 2
Conservation category comparison - are D values significanatly different than 1 for conservation categories?
MSH.conservation.comparison.Pval1
## Mean Mean-CI Mean+CI n
## Non-susceptible 0.04337 0.04144971 0.04529029 588
## Vulnerable 0.02784 0.02662165 0.02905835 7
## Susceptible 0.19186 0.18608935 0.19763065 16
## Menaced 0.90536 0.89134146 0.91937854 2
Conservation category comparison - are D values significanatly different than 0 for the conservation categories?
MSH.conservation.comparison.Pval0
## Mean Mean-CI Mean+CI n
## Non-susceptible 0.00000 0.00000000 0.00000000 588
## Vulnerable 0.02930 0.02770735 0.03089265 7
## Susceptible 0.00000 0.00000000 0.00000000 16
## Menaced 0.02609 0.02218514 0.02999486 2
Phylo.D scores for status in Quebec comparison
MSH.quebec.comparison.phylo.D
## Mean Mean-CI Mean+CI n
## Native 0.4904058 0.4889931 0.4918185 465
## Introduced 0.4875209 0.4860248 0.4890169 147
## Excluded 0.9531961 0.9440406 0.9623517 0
## Ephemeral -0.4152977 -0.5747786 -0.2558169 1
Quebec status category comparison - are D values significanatly different than 1 for status in Quebec categories?
MSH.quebec.comparison.Pval1
## Mean Mean-CI Mean+CI n
## Native 0.00000 0.0000000 0.0000000 465
## Introduced 0.00000 0.0000000 0.0000000 147
## Excluded 0.39109 0.3788346 0.4033454 0
## Ephemeral 0.26487 0.2456407 0.2840993 1
Quebec status comparison - are D values significanatly different than 0 for Quebec status comparison?
MSH.quebec.comparison.Pval0
## Mean Mean-CI Mean+CI n
## Native 0.00000 0.0000000 0.0000000 465
## Introduced 0.00000 0.0000000 0.0000000 147
## Excluded 0.18961 NA NA 0
## Ephemeral 0.60626 0.5841541 0.6283659 1
Boxplots comparing phylo.D values
