Title: MSH surveys over posterior; phylogenetic diversity

Name: Tammy L. Elliott

Date:February 17, 2016

R version 3.1

Phylogenetic diversity (PD) plots

Bottom plots correct for richness differences

Table showing temporal survey comparison (PD)

MSH.survey.comparison.pd

##                Mean   Mean-CI   Mean+CI   n
## Both      25867.268 25327.195 26407.341 415
## Not found  8554.377  8401.196  8707.558  70
## Additions 14645.230 14342.673 14947.787 198

Table showing conservation categories comparison (PD)

MSH.conservation.comparison.pd

##                       Mean    Mean-CI    Mean+CI   n
## Non-susceptible 31503.1559 30838.1948 32168.1170 588
## Vulnerable       1937.4859  1911.7815  1963.1904   7
## Susceptible      4248.7586  4167.4365  4330.0807  16
## Menaced           704.7367   698.0338   711.4396   2

Table showing Quebec status comparison (PD)

MSH.Quebec.comparison

##                  Mean    Mean-CI  Mean+CI   n
## Native     27879.9535 27302.8230 28457.08 588
## Introduced 11633.7093 11364.6215 11902.80 147
## Excluded     827.1645   826.5890   827.74   0
## Ephemeral    413.5822   413.2945   413.87   1

```

Table showing temporal survey comparison (standardized PD)

MSH.survey.comparison.ses.pd

##                 Mean    Mean-CI    Mean+CI   n
## Both       0.7559287  0.7120325  0.7998249 415
## Not found -0.5012842 -0.5380116 -0.4645568  70
## Additions -3.5668901 -3.6046231 -3.5291571 198

Table showing conservation categories comparison (standardized PD)

MSH.conservation.comparison.ses.pd

##                        Mean      Mean-CI     Mean+CI   n
## Non-susceptible -2.83429617 -2.890011572 -2.77858077 588
## Vulnerable       1.11563083  1.091703286  1.13955838   7
## Susceptible      0.02108473 -0.003120086  0.04528955  16
## Menaced          0.98919228  0.978507303  0.99987725   2

Table showing Quebec status comparison (standardized PD)

MSH.Quebec.comparison.ses.pd

##                 Mean   Mean-CI   Mean+CI   n
## Native     -2.150484 -2.206700 -2.094267 588
## Introduced -4.755092 -4.811396 -4.698788 147
## Excluded    1.718006  1.681004  1.755008   0
## Ephemeral        NaN       NaN        NA   1

Table comparing conservation / non-conservation pd groupings

MSH.conservation.status.comparison.pd

##                       Mean   Mean-CI   Mean+CI   n
## Non-conservation 31503.156 30838.195 32168.117 650
## Conservation      2296.994  2004.422  2589.565  33

Table showing ses.pd for non-conservation / conservation ses.pd

MSH.conservation.status.comparison.ses.pd

##                        Mean    Mean-CI   Mean+CI   n
## Non-conservation -2.8342962 -2.8900116 -2.778581 650
## Conservation      0.7086359  0.6104819  0.806790  33