奥華子いいですよね
x <- "2012年10月3<e6>
y1 <- "2012年10月3<e6>
identical(x, y1)
## [1] TRUE
print(as.Date(x = x, format = "%Y年%m月%d日
## [1] "2012-10-03"
print(as.Date(x = y1, format = "%Y年%m月%d日
## [1] "2012-10-03"
追記:環境こんな感じです。
sessionInfo()
## R version 2.15.0 (2012-03-30)
## Platform: x86_64-pc-mingw32/x64 (64-bit)
##
## locale:
## [1] LC_COLLATE=Japanese_Japan.932 LC_CTYPE=Japanese_Japan.932
## [3] LC_MONETARY=Japanese_Japan.932 LC_NUMERIC=C
## [5] LC_TIME=Japanese_Japan.932
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] knitr_0.5
##
## loaded via a namespace (and not attached):
## [1] codetools_0.2-8 digest_0.5.2 evaluate_0.4.2 formatR_0.4
## [5] highlight_0.2-5 parser_0.0-14 plyr_1.7.1 Rcpp_0.9.10
## [9] stringr_0.6 tools_2.15.0