Extensive test code for tableone package
References
Load packages
## Load devtools
library(devtools)
## Load testthat for unit testing
library(testthat)
## Load from the local repo
load_all("~/statistics/package_development/tableone/")
## Load data
library(survival)
data(pbc)
head(pbc)
## id time status trt age sex ascites hepato spiders edema bili chol albumin copper alk.phos ast trig platelet
## 1 1 400 2 1 58.77 f 1 1 1 1.0 14.5 261 2.60 156 1718 137.95 172 190
## 2 2 4500 0 1 56.45 f 0 1 1 0.0 1.1 302 4.14 54 7395 113.52 88 221
## 3 3 1012 2 1 70.07 m 0 0 0 0.5 1.4 176 3.48 210 516 96.10 55 151
## 4 4 1925 2 1 54.74 f 0 1 1 0.5 1.8 244 2.54 64 6122 60.63 92 183
## 5 5 1504 1 2 38.11 f 0 1 1 0.0 3.4 279 3.53 143 671 113.15 72 136
## 6 6 2503 2 2 66.26 f 0 1 0 0.0 0.8 248 3.98 50 944 93.00 63 NA
## protime stage
## 1 12.2 4
## 2 10.6 3
## 3 12.0 4
## 4 10.3 4
## 5 10.9 3
## 6 11.0 3
Load data
### Define variables
contVars <- c("time","age","bili","chol","albumin","copper","alk.phos","ast","trig","platelet","protime")
catVars <- c("trt","ascites","spiders","edema","stage")
pbc[catVars] <- lapply(pbc[catVars], factor)
vars <- c(contVars, catVars)
## Define Strata
strata <- "status"
strataTwoVars <- c("status","sex")
strataThreeVars <- c("sex","ascites","hepato")
## Data and variables
dataFrame <- pbc
nonNormalVars <- c("bili","chol","copper","alk.phos","trig","protime")
exactVars <- c("ascites","edema")
## Create edema strata that are of sizes 1, 2, and 3
smallDataFrame <- pbc[c(2, 3,4, 1,10,14),]
smallStrata <- "edema"
Test on normal dataset
### Behaviors on correct data format (non-stratified, single variable)
## Creation
tableOne <- CreateTableOne(vars = "age", data = dataFrame)
## NOTE: no factor/logical/character variables supplied, using CreateContTable()
## print method
tableOne
##
## Overall
## n 418
## age (mean (sd)) 50.74 (10.45)
## summary method
summary(tableOne)
## strata: Overall
## n miss p.miss mean sd median p25 p75 min max skew kurt
## age 418 0 0 51 10 51 43 58 26 78 0.087 -0.62
## Five digits
summary(tableOne, digits = 5)
## strata: Overall
## n miss p.miss mean sd median p25 p75 min max skew kurt
## age 418 0 0 50.742 10.447 51.001 42.832 58.241 26.278 78.439 0.08685 -0.61673
## print method by default
print(tableOne)
##
## Overall
## n 418
## age (mean (sd)) 50.74 (10.45)
## Five digits
print(tableOne, digits = 5)
##
## Overall
## n 418
## age (mean (sd)) 50.74155 (10.44721)
## All nonnormal
print(tableOne, nonnormal = TRUE)
##
## Overall
## n 418
## age (median [IQR]) 51.00 [42.83, 58.24]
## quote
print(tableOne, quote = TRUE)
## ""
## "" "Overall"
## "n" "418"
## "age (mean (sd))" "50.74 (10.45)"
## Partially nonnormal
print(tableOne, nonnormal = nonNormalVars)
##
## Overall
## n 418
## age (mean (sd)) 50.74 (10.45)
## Partially nonnormal median [range]
print(tableOne, nonnormal = nonNormalVars, minMax = TRUE)### showAllLevels
##
## Overall
## n 418
## age (mean (sd)) 50.74 (10.45)
print(tableOne, showAllLevels = TRUE)
##
## Overall
## n 418
## age (mean (sd)) 50.74 (10.45)
## test
print(tableOne, test = FALSE)
##
## Overall
## n 418
## age (mean (sd)) 50.74 (10.45)
## pDigits
print(tableOne, pDigits = 5)
##
## Overall
## n 418
## age (mean (sd)) 50.74 (10.45)
## No explanation
print(tableOne, explain = FALSE)
##
## Overall
## n 418
## age 50.74 (10.45)
## No spaces
print(tableOne, noSpaces = TRUE, quote = TRUE)
## ""
## "" "Overall"
## "n" "418"
## "age (mean (sd))" "50.74 (10.45)"
### Behaviors on correct data format (non-stratified)
## Creation
tableOne <- CreateTableOne(vars = vars, data = dataFrame)
## print method
tableOne
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## summary method
summary(tableOne)
##
## ### Summary of continuous variables ###
##
## strata: Overall
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 418 0 0.0 1918 1104.7 1730 1092.8 2614 41.0 4795 0.47 -0.5
## age 418 0 0.0 51 10.4 51 42.8 58 26.3 78 0.09 -0.6
## bili 418 0 0.0 3 4.4 1 0.8 3 0.3 28 2.72 8.1
## chol 418 134 32.1 370 231.9 310 249.5 400 120.0 1775 3.41 14.3
## albumin 418 0 0.0 3 0.4 4 3.2 4 2.0 5 -0.47 0.6
## copper 418 108 25.8 98 85.6 73 41.2 123 4.0 588 2.30 7.6
## alk.phos 418 106 25.4 1983 2140.4 1259 871.5 1980 289.0 13862 2.99 9.7
## ast 418 106 25.4 123 56.7 115 80.6 152 26.4 457 1.45 4.3
## trig 418 136 32.5 125 65.1 108 84.2 151 33.0 598 2.52 11.8
## platelet 418 11 2.6 257 98.3 251 188.5 318 62.0 721 0.63 0.9
## protime 418 2 0.5 11 1.0 11 10.0 11 9.0 18 2.22 10.0
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## strata: Overall
## var n miss p.miss level freq percent cum.percent
## trt 418 106 25.4 1 158 50.6 50.6
## 2 154 49.4 100.0
##
## ascites 418 106 25.4 0 288 92.3 92.3
## 1 24 7.7 100.0
##
## spiders 418 106 25.4 0 222 71.2 71.2
## 1 90 28.8 100.0
##
## edema 418 0 0.0 0 354 84.7 84.7
## 0.5 44 10.5 95.2
## 1 20 4.8 100.0
##
## stage 418 6 1.4 1 21 5.1 5.1
## 2 92 22.3 27.4
## 3 155 37.6 65.0
## 4 144 35.0 100.0
##
## Five digits
summary(tableOne, digits = 5)
##
## ### Summary of continuous variables ###
##
## strata: Overall
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 418 0 0.00000 1917.7823 1104.67299 1730.000 1092.7500 2613.500 41.000 4795.000 0.47260 -0.48214
## age 418 0 0.00000 50.7416 10.44721 51.001 42.8323 58.241 26.278 78.439 0.08685 -0.61673
## bili 418 0 0.00000 3.2208 4.40751 1.400 0.8000 3.400 0.300 28.000 2.71761 8.06534
## chol 418 134 32.05742 369.5106 231.94455 309.500 249.5000 400.000 120.000 1775.000 3.40853 14.33787
## albumin 418 0 0.00000 3.4974 0.42497 3.530 3.2425 3.770 1.960 4.640 -0.46753 0.56674
## copper 418 108 25.83732 97.6484 85.61392 73.000 41.2500 123.000 4.000 588.000 2.30364 7.62402
## alk.phos 418 106 25.35885 1982.6558 2140.38882 1259.000 871.5000 1980.000 289.000 13862.400 2.99283 9.66255
## ast 418 106 25.35885 122.5563 56.69952 114.700 80.6000 151.900 26.350 457.250 1.44920 4.31198
## trig 418 136 32.53589 124.7021 65.14864 108.000 84.2500 151.000 33.000 598.000 2.52390 11.80275
## platelet 418 11 2.63158 257.0246 98.32558 251.000 188.5000 318.000 62.000 721.000 0.62710 0.86304
## protime 418 2 0.47847 10.7317 1.02200 10.600 10.0000 11.100 9.000 18.000 2.22328 10.04077
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## strata: Overall
## var n miss p.miss level freq percent cum.percent
## trt 418 106 25.35885 1 158 50.64103 50.64103
## 2 154 49.35897 100.00000
##
## ascites 418 106 25.35885 0 288 92.30769 92.30769
## 1 24 7.69231 100.00000
##
## spiders 418 106 25.35885 0 222 71.15385 71.15385
## 1 90 28.84615 100.00000
##
## edema 418 0 0.00000 0 354 84.68900 84.68900
## 0.5 44 10.52632 95.21531
## 1 20 4.78469 100.00000
##
## stage 418 6 1.43541 1 21 5.09709 5.09709
## 2 92 22.33010 27.42718
## 3 155 37.62136 65.04854
## 4 144 34.95146 100.00000
##
## print method by default
print(tableOne)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## Five digits
print(tableOne, digits = 5)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## All nonnormal
print(tableOne, nonnormal = TRUE)
##
## Overall
## n 418
## time (median [IQR]) 1730.00 [1092.75, 2613.50]
## age (median [IQR]) 51.00 [42.83, 58.24]
## bili (median [IQR]) 1.40 [0.80, 3.40]
## chol (median [IQR]) 309.50 [249.50, 400.00]
## albumin (median [IQR]) 3.53 [3.24, 3.77]
## copper (median [IQR]) 73.00 [41.25, 123.00]
## alk.phos (median [IQR]) 1259.00 [871.50, 1980.00]
## ast (median [IQR]) 114.70 [80.60, 151.90]
## trig (median [IQR]) 108.00 [84.25, 151.00]
## platelet (median [IQR]) 251.00 [188.50, 318.00]
## protime (median [IQR]) 10.60 [10.00, 11.10]
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## quote
print(tableOne, quote = TRUE)
## ""
## "" "Overall"
## "n" "418"
## "time (mean (sd))" "1917.78 (1104.67)"
## "age (mean (sd))" " 50.74 (10.45)"
## "bili (mean (sd))" " 3.22 (4.41)"
## "chol (mean (sd))" " 369.51 (231.94)"
## "albumin (mean (sd))" " 3.50 (0.42)"
## "copper (mean (sd))" " 97.65 (85.61)"
## "alk.phos (mean (sd))" "1982.66 (2140.39)"
## "ast (mean (sd))" " 122.56 (56.70)"
## "trig (mean (sd))" " 124.70 (65.15)"
## "platelet (mean (sd))" " 257.02 (98.33)"
## "protime (mean (sd))" " 10.73 (1.02)"
## "trt = 2 (%)" " 154 (49.4) "
## "ascites = 1 (%)" " 24 (7.7) "
## "spiders = 1 (%)" " 90 (28.8) "
## "edema (%)" " "
## " 0" " 354 (84.7) "
## " 0.5" " 44 (10.5) "
## " 1" " 20 ( 4.8) "
## "stage (%)" " "
## " 1" " 21 ( 5.1) "
## " 2" " 92 (22.3) "
## " 3" " 155 (37.6) "
## " 4" " 144 (35.0) "
## Partially nonnormal
print(tableOne, nonnormal = nonNormalVars)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (median [IQR]) 1.40 [0.80, 3.40]
## chol (median [IQR]) 309.50 [249.50, 400.00]
## albumin (mean (sd)) 3.50 (0.42)
## copper (median [IQR]) 73.00 [41.25, 123.00]
## alk.phos (median [IQR]) 1259.00 [871.50, 1980.00]
## ast (mean (sd)) 122.56 (56.70)
## trig (median [IQR]) 108.00 [84.25, 151.00]
## platelet (mean (sd)) 257.02 (98.33)
## protime (median [IQR]) 10.60 [10.00, 11.10]
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## Partially nonnormal median [range]
print(tableOne, nonnormal = nonNormalVars, minMax = TRUE)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (median [range]) 1.40 [0.30, 28.00]
## chol (median [range]) 309.50 [120.00, 1775.00]
## albumin (mean (sd)) 3.50 (0.42)
## copper (median [range]) 73.00 [4.00, 588.00]
## alk.phos (median [range]) 1259.00 [289.00, 13862.40]
## ast (mean (sd)) 122.56 (56.70)
## trig (median [range]) 108.00 [33.00, 598.00]
## platelet (mean (sd)) 257.02 (98.33)
## protime (median [range]) 10.60 [9.00, 18.00]
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## showAllLevels
print(tableOne, showAllLevels = TRUE)
##
## level Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt (%) 1 158 (50.6)
## 2 154 (49.4)
## ascites (%) 0 288 (92.3)
## 1 24 ( 7.7)
## spiders (%) 0 222 (71.2)
## 1 90 (28.8)
## edema (%) 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%) 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## test
print(tableOne, test = FALSE)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## pDigits
print(tableOne, pDigits = 5)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## No explanation
print(tableOne, explain = FALSE)
##
## Overall
## n 418
## time 1917.78 (1104.67)
## age 50.74 (10.45)
## bili 3.22 (4.41)
## chol 369.51 (231.94)
## albumin 3.50 (0.42)
## copper 97.65 (85.61)
## alk.phos 1982.66 (2140.39)
## ast 122.56 (56.70)
## trig 124.70 (65.15)
## platelet 257.02 (98.33)
## protime 10.73 (1.02)
## trt = 2 154 (49.4)
## ascites = 1 24 (7.7)
## spiders = 1 90 (28.8)
## edema
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## No spaces
print(tableOne, noSpaces = TRUE, quote = TRUE)
## ""
## "" "Overall"
## "n" "418"
## "time (mean (sd))" "1917.78 (1104.67)"
## "age (mean (sd))" "50.74 (10.45)"
## "bili (mean (sd))" "3.22 (4.41)"
## "chol (mean (sd))" "369.51 (231.94)"
## "albumin (mean (sd))" "3.50 (0.42)"
## "copper (mean (sd))" "97.65 (85.61)"
## "alk.phos (mean (sd))" "1982.66 (2140.39)"
## "ast (mean (sd))" "122.56 (56.70)"
## "trig (mean (sd))" "124.70 (65.15)"
## "platelet (mean (sd))" "257.02 (98.33)"
## "protime (mean (sd))" "10.73 (1.02)"
## "trt = 2 (%)" "154 (49.4)"
## "ascites = 1 (%)" "24 (7.7)"
## "spiders = 1 (%)" "90 (28.8)"
## "edema (%)" ""
## " 0" "354 (84.7)"
## " 0.5" "44 (10.5)"
## " 1" "20 (4.8)"
## "stage (%)" ""
## " 1" "21 (5.1)"
## " 2" "92 (22.3)"
## " 3" "155 (37.6)"
## " 4" "144 (35.0)"
### Behaviors on correct data format (stratified, 2-groups)
## Creation
tableOne <- CreateTableOne(vars = vars, strata = "sex", data = dataFrame)
## print method
tableOne
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## summary method
summary(tableOne)
##
## ### Summary of continuous variables ###
##
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 44 0 0 1894 1213.0 1507 1061 2716 140.0 4459 0.8221 -0.4
## age 44 0 0 56 11.0 54 49 65 33.5 78 0.0002 -0.6
## bili 44 0 0 3 2.3 2 1 4 0.6 10 1.4018 1.1
## chol 44 9 20 362 179.0 317 245 426 151.0 1000 1.5922 3.4
## albumin 44 0 0 4 0.5 4 3 4 2.3 4 -0.9236 0.8
## copper 44 8 18 154 100.7 134 81 212 13.0 444 0.9211 0.8
## alk.phos 44 8 18 2173 2418.4 1116 852 2313 516.0 10397 2.4419 5.8
## ast 44 8 18 122 47.0 122 83 153 46.5 222 0.3377 -0.8
## trig 44 9 20 133 52.2 126 91 163 49.0 242 0.4473 -0.7
## platelet 44 1 2 231 85.2 217 166 298 70.0 394 0.0117 -1.0
## protime 44 0 0 11 0.9 11 10 11 9.7 14 1.3761 2.5
## ---------------------------------------------------------------------------------------
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 374 0 0.0 1921 1093.0 1773 1095.5 2606 41.0 4795 0.42 -0.5
## age 374 0 0.0 50 10.2 50 42.4 57 26.3 77 0.07 -0.7
## bili 374 0 0.0 3 4.6 1 0.7 3 0.3 28 2.65 7.4
## chol 374 125 33.4 371 238.7 309 252.0 395 120.0 1775 3.48 14.4
## albumin 374 0 0.0 3 0.4 4 3.2 4 2.0 5 -0.41 0.6
## copper 374 100 26.7 90 80.7 67 40.0 112 4.0 588 2.70 10.9
## alk.phos 374 98 26.2 1958 2105.0 1270 877.5 1964 289.0 13862 3.10 10.6
## ast 374 98 26.2 123 57.9 113 80.6 152 26.4 457 1.52 4.5
## trig 374 127 34.0 123 66.8 106 84.0 146 33.0 598 2.67 12.4
## platelet 374 10 2.7 260 99.4 252 190.0 319 62.0 721 0.65 0.9
## protime 374 2 0.5 11 1.0 11 10.0 11 9.0 18 2.33 10.8
##
## p-values
## pNormal pNonNormal
## time 0.88032351 0.57591934
## age 0.00080217 0.00265366
## bili 0.57291443 0.02892490
## chol 0.84802992 0.94479917
## albumin 0.53603916 0.27292778
## copper 0.00001921 0.00001876
## alk.phos 0.57143514 0.94518752
## ast 0.94936505 0.71776531
## trig 0.39810994 0.10007135
## platelet 0.06788007 0.11288380
## protime 0.15131569 0.04169974
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 44 8 18.2 1 21 58.3 58.3
## 2 15 41.7 100.0
##
## ascites 44 8 18.2 0 33 91.7 91.7
## 1 3 8.3 100.0
##
## spiders 44 8 18.2 0 32 88.9 88.9
## 1 4 11.1 100.0
##
## edema 44 0 0.0 0 36 81.8 81.8
## 0.5 5 11.4 93.2
## 1 3 6.8 100.0
##
## stage 44 0 0.0 1 3 6.8 6.8
## 2 8 18.2 25.0
## 3 16 36.4 61.4
## 4 17 38.6 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 374 98 26.2 1 137 49.6 49.6
## 2 139 50.4 100.0
##
## ascites 374 98 26.2 0 255 92.4 92.4
## 1 21 7.6 100.0
##
## spiders 374 98 26.2 0 190 68.8 68.8
## 1 86 31.2 100.0
##
## edema 374 0 0.0 0 318 85.0 85.0
## 0.5 39 10.4 95.5
## 1 17 4.5 100.0
##
## stage 374 6 1.6 1 18 4.9 4.9
## 2 84 22.8 27.7
## 3 139 37.8 65.5
## 4 127 34.5 100.0
##
##
## p-values
## pApprox pExact
## trt 0.42123 0.37743
## ascites 1.00000 0.74738
## spiders 0.02135 0.01094
## edema 0.77662 0.65149
## stage 0.83074 0.77658
## Five digits
summary(tableOne, digits = 5)
##
## ### Summary of continuous variables ###
##
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 44 0 0.0000 1894.0227 1213.03436 1507.000 1060.7500 2715.750 140.000 4459.000 0.82209739 -0.37536
## age 44 0 0.0000 55.7107 10.97780 54.001 48.9692 64.582 33.476 78.439 0.00016734 -0.60536
## bili 44 0 0.0000 2.8659 2.31948 2.050 1.3000 3.500 0.600 9.500 1.40184985 1.07155
## chol 44 9 20.4545 362.4571 178.99332 317.000 245.0000 426.500 151.000 1000.000 1.59223319 3.41710
## albumin 44 0 0.0000 3.5350 0.45660 3.645 3.3275 3.870 2.270 4.300 -0.92362326 0.81075
## copper 44 8 18.1818 154.2778 100.66539 134.500 80.7500 211.750 13.000 444.000 0.92109164 0.76207
## alk.phos 44 8 18.1818 2172.9500 2418.44624 1116.000 852.0000 2313.000 516.000 10396.800 2.44192745 5.78848
## ast 44 8 18.1818 121.9906 47.01310 121.675 82.7700 153.450 46.500 221.880 0.33765872 -0.78812
## trig 44 9 20.4545 133.4286 52.16844 126.000 91.0000 163.000 49.000 242.000 0.44729489 -0.66362
## platelet 44 1 2.2727 231.1395 85.22563 217.000 165.5000 298.500 70.000 394.000 0.01167704 -0.97192
## protime 44 0 0.0000 10.9409 0.93145 10.900 10.2750 11.225 9.700 14.100 1.37610475 2.52950
## ---------------------------------------------------------------------------------------
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 374 0 0.00000 1920.5775 1092.95317 1773.000 1095.500 2606.2500 41.000 4795.000 0.423094 -0.49022
## age 374 0 0.00000 50.1569 10.24065 50.193 42.379 56.9993 26.278 76.709 0.068061 -0.66008
## bili 374 0 0.00000 3.2626 4.59139 1.300 0.700 3.4000 0.300 28.000 2.648590 7.39780
## chol 374 125 33.42246 370.5020 238.72656 309.000 252.000 395.0000 120.000 1775.000 3.477832 14.38135
## albumin 374 0 0.00000 3.4930 0.42153 3.520 3.240 3.7675 1.960 4.640 -0.410847 0.58386
## copper 374 100 26.73797 90.2080 80.73838 67.000 40.000 111.7500 4.000 588.000 2.704782 10.87987
## alk.phos 374 98 26.20321 1957.8348 2105.04905 1270.500 877.500 1963.7500 289.000 13862.400 3.102248 10.59178
## ast 374 98 26.20321 122.6301 57.91665 113.335 80.600 151.9000 26.350 457.250 1.515794 4.48689
## trig 374 127 33.95722 123.4656 66.78096 106.000 84.000 146.0000 33.000 598.000 2.673765 12.41800
## platelet 374 10 2.67380 260.0824 99.41838 252.500 190.000 319.0000 62.000 721.000 0.654158 0.89382
## protime 374 2 0.53476 10.7070 1.03053 10.600 10.000 11.1000 9.000 18.000 2.327509 10.84613
##
## p-values
## pNormal pNonNormal
## time 0.88032351 0.57591934
## age 0.00080217 0.00265366
## bili 0.57291443 0.02892490
## chol 0.84802992 0.94479917
## albumin 0.53603916 0.27292778
## copper 0.00001921 0.00001876
## alk.phos 0.57143514 0.94518752
## ast 0.94936505 0.71776531
## trig 0.39810994 0.10007135
## platelet 0.06788007 0.11288380
## protime 0.15131569 0.04169974
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 44 8 18.18182 1 21 58.33333 58.33333
## 2 15 41.66667 100.00000
##
## ascites 44 8 18.18182 0 33 91.66667 91.66667
## 1 3 8.33333 100.00000
##
## spiders 44 8 18.18182 0 32 88.88889 88.88889
## 1 4 11.11111 100.00000
##
## edema 44 0 0.00000 0 36 81.81818 81.81818
## 0.5 5 11.36364 93.18182
## 1 3 6.81818 100.00000
##
## stage 44 0 0.00000 1 3 6.81818 6.81818
## 2 8 18.18182 25.00000
## 3 16 36.36364 61.36364
## 4 17 38.63636 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 374 98 26.20321 1 137 49.63768 49.63768
## 2 139 50.36232 100.00000
##
## ascites 374 98 26.20321 0 255 92.39130 92.39130
## 1 21 7.60870 100.00000
##
## spiders 374 98 26.20321 0 190 68.84058 68.84058
## 1 86 31.15942 100.00000
##
## edema 374 0 0.00000 0 318 85.02674 85.02674
## 0.5 39 10.42781 95.45455
## 1 17 4.54545 100.00000
##
## stage 374 6 1.60428 1 18 4.89130 4.89130
## 2 84 22.82609 27.71739
## 3 139 37.77174 65.48913
## 4 127 34.51087 100.00000
##
##
## p-values
## pApprox pExact
## trt 0.42123 0.37743
## ascites 1.00000 0.74738
## spiders 0.02135 0.01094
## edema 0.77662 0.65149
## stage 0.83074 0.77658
## print method by default
print(tableOne)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## Five digits
print(tableOne, digits = 5)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## All nonnormal
print(tableOne, nonnormal = TRUE)
## Stratified by sex
## m f p test
## n 44 374
## time (median [IQR]) 1507.00 [1060.75, 2715.75] 1773.00 [1095.50, 2606.25] 0.576 nonnorm
## age (median [IQR]) 54.00 [48.97, 64.58] 50.19 [42.38, 57.00] 0.003 nonnorm
## bili (median [IQR]) 2.05 [1.30, 3.50] 1.30 [0.70, 3.40] 0.029 nonnorm
## chol (median [IQR]) 317.00 [245.00, 426.50] 309.00 [252.00, 395.00] 0.945 nonnorm
## albumin (median [IQR]) 3.65 [3.33, 3.87] 3.52 [3.24, 3.77] 0.273 nonnorm
## copper (median [IQR]) 134.50 [80.75, 211.75] 67.00 [40.00, 111.75] <0.001 nonnorm
## alk.phos (median [IQR]) 1116.00 [852.00, 2313.00] 1270.50 [877.50, 1963.75] 0.945 nonnorm
## ast (median [IQR]) 121.68 [82.77, 153.45] 113.34 [80.60, 151.90] 0.718 nonnorm
## trig (median [IQR]) 126.00 [91.00, 163.00] 106.00 [84.00, 146.00] 0.100 nonnorm
## platelet (median [IQR]) 217.00 [165.50, 298.50] 252.50 [190.00, 319.00] 0.113 nonnorm
## protime (median [IQR]) 10.90 [10.28, 11.22] 10.60 [10.00, 11.10] 0.042 nonnorm
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## quote
print(tableOne, quote = TRUE)
## "Stratified by sex"
## "" "m" "f" "p" "test"
## "n" "44" "374" "" ""
## "time (mean (sd))" "1894.02 (1213.03)" "1920.58 (1092.95)" " 0.880" ""
## "age (mean (sd))" " 55.71 (10.98)" " 50.16 (10.24)" " 0.001" ""
## "bili (mean (sd))" " 2.87 (2.32)" " 3.26 (4.59)" " 0.573" ""
## "chol (mean (sd))" " 362.46 (178.99)" " 370.50 (238.73)" " 0.848" ""
## "albumin (mean (sd))" " 3.54 (0.46)" " 3.49 (0.42)" " 0.536" ""
## "copper (mean (sd))" " 154.28 (100.67)" " 90.21 (80.74)" "<0.001" ""
## "alk.phos (mean (sd))" "2172.95 (2418.45)" "1957.83 (2105.05)" " 0.571" ""
## "ast (mean (sd))" " 121.99 (47.01)" " 122.63 (57.92)" " 0.949" ""
## "trig (mean (sd))" " 133.43 (52.17)" " 123.47 (66.78)" " 0.398" ""
## "platelet (mean (sd))" " 231.14 (85.23)" " 260.08 (99.42)" " 0.068" ""
## "protime (mean (sd))" " 10.94 (0.93)" " 10.71 (1.03)" " 0.151" ""
## "trt = 2 (%)" " 15 (41.7) " " 139 (50.4) " " 0.421" ""
## "ascites = 1 (%)" " 3 (8.3) " " 21 (7.6) " " 1.000" ""
## "spiders = 1 (%)" " 4 (11.1) " " 86 (31.2) " " 0.021" ""
## "edema (%)" " " " " " 0.777" ""
## " 0" " 36 (81.8) " " 318 (85.0) " "" ""
## " 0.5" " 5 (11.4) " " 39 (10.4) " "" ""
## " 1" " 3 ( 6.8) " " 17 ( 4.5) " "" ""
## "stage (%)" " " " " " 0.831" ""
## " 1" " 3 ( 6.8) " " 18 ( 4.9) " "" ""
## " 2" " 8 (18.2) " " 84 (22.8) " "" ""
## " 3" " 16 (36.4) " " 139 (37.8) " "" ""
## " 4" " 17 (38.6) " " 127 (34.5) " "" ""
## Partially nonnormal
print(tableOne, nonnormal = nonNormalVars)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (median [IQR]) 2.05 [1.30, 3.50] 1.30 [0.70, 3.40] 0.029 nonnorm
## chol (median [IQR]) 317.00 [245.00, 426.50] 309.00 [252.00, 395.00] 0.945 nonnorm
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (median [IQR]) 134.50 [80.75, 211.75] 67.00 [40.00, 111.75] <0.001 nonnorm
## alk.phos (median [IQR]) 1116.00 [852.00, 2313.00] 1270.50 [877.50, 1963.75] 0.945 nonnorm
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (median [IQR]) 126.00 [91.00, 163.00] 106.00 [84.00, 146.00] 0.100 nonnorm
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (median [IQR]) 10.90 [10.28, 11.22] 10.60 [10.00, 11.10] 0.042 nonnorm
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## Partially nonnormal median [range]
## Partially nonnormal median [range]
print(tableOne, nonnormal = nonNormalVars, minMax = TRUE)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (median [range]) 2.05 [0.60, 9.50] 1.30 [0.30, 28.00] 0.029 nonnorm
## chol (median [range]) 317.00 [151.00, 1000.00] 309.00 [120.00, 1775.00] 0.945 nonnorm
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (median [range]) 134.50 [13.00, 444.00] 67.00 [4.00, 588.00] <0.001 nonnorm
## alk.phos (median [range]) 1116.00 [516.00, 10396.80] 1270.50 [289.00, 13862.40] 0.945 nonnorm
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (median [range]) 126.00 [49.00, 242.00] 106.00 [33.00, 598.00] 0.100 nonnorm
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (median [range]) 10.90 [9.70, 14.10] 10.60 [9.00, 18.00] 0.042 nonnorm
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## showAllLevels
print(tableOne, showAllLevels = TRUE)
## Stratified by sex
## level m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt (%) 1 21 (58.3) 137 (49.6) 0.421
## 2 15 (41.7) 139 (50.4)
## ascites (%) 0 33 (91.7) 255 (92.4) 1.000
## 1 3 ( 8.3) 21 ( 7.6)
## spiders (%) 0 32 (88.9) 190 (68.8) 0.021
## 1 4 (11.1) 86 (31.2)
## edema (%) 0 36 (81.8) 318 (85.0) 0.777
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 1 3 ( 6.8) 18 ( 4.9) 0.831
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## test
print(tableOne, test = FALSE)
## Stratified by sex
## m f
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95)
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24)
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59)
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73)
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42)
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74)
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05)
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92)
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78)
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42)
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03)
## trt = 2 (%) 15 (41.7) 139 (50.4)
## ascites = 1 (%) 3 (8.3) 21 (7.6)
## spiders = 1 (%) 4 (11.1) 86 (31.2)
## edema (%)
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%)
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## pDigits
print(tableOne, pDigits = 5)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## No explanation
print(tableOne, explain = FALSE)
## Stratified by sex
## m f p test
## n 44 374
## time 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age 55.71 (10.98) 50.16 (10.24) 0.001
## bili 2.87 (2.32) 3.26 (4.59) 0.573
## chol 362.46 (178.99) 370.50 (238.73) 0.848
## albumin 3.54 (0.46) 3.49 (0.42) 0.536
## copper 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast 121.99 (47.01) 122.63 (57.92) 0.949
## trig 133.43 (52.17) 123.47 (66.78) 0.398
## platelet 231.14 (85.23) 260.08 (99.42) 0.068
## protime 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 15 (41.7) 139 (50.4) 0.421
## ascites = 1 3 (8.3) 21 (7.6) 1.000
## spiders = 1 4 (11.1) 86 (31.2) 0.021
## edema 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## No spaces
print(tableOne, noSpaces = TRUE, quote = TRUE)
## "Stratified by sex"
## "" "m" "f" "p" "test"
## "n" "44" "374" "" ""
## "time (mean (sd))" "1894.02 (1213.03)" "1920.58 (1092.95)" "0.880" ""
## "age (mean (sd))" "55.71 (10.98)" "50.16 (10.24)" "0.001" ""
## "bili (mean (sd))" "2.87 (2.32)" "3.26 (4.59)" "0.573" ""
## "chol (mean (sd))" "362.46 (178.99)" "370.50 (238.73)" "0.848" ""
## "albumin (mean (sd))" "3.54 (0.46)" "3.49 (0.42)" "0.536" ""
## "copper (mean (sd))" "154.28 (100.67)" "90.21 (80.74)" "<0.001" ""
## "alk.phos (mean (sd))" "2172.95 (2418.45)" "1957.83 (2105.05)" "0.571" ""
## "ast (mean (sd))" "121.99 (47.01)" "122.63 (57.92)" "0.949" ""
## "trig (mean (sd))" "133.43 (52.17)" "123.47 (66.78)" "0.398" ""
## "platelet (mean (sd))" "231.14 (85.23)" "260.08 (99.42)" "0.068" ""
## "protime (mean (sd))" "10.94 (0.93)" "10.71 (1.03)" "0.151" ""
## "trt = 2 (%)" "15 (41.7)" "139 (50.4)" "0.421" ""
## "ascites = 1 (%)" "3 (8.3)" "21 (7.6)" "1.000" ""
## "spiders = 1 (%)" "4 (11.1)" "86 (31.2)" "0.021" ""
## "edema (%)" "" "" "0.777" ""
## " 0" "36 (81.8)" "318 (85.0)" "" ""
## " 0.5" "5 (11.4)" "39 (10.4)" "" ""
## " 1" "3 (6.8)" "17 (4.5)" "" ""
## "stage (%)" "" "" "0.831" ""
## " 1" "3 (6.8)" "18 (4.9)" "" ""
## " 2" "8 (18.2)" "84 (22.8)" "" ""
## " 3" "16 (36.4)" "139 (37.8)" "" ""
## " 4" "17 (38.6)" "127 (34.5)" "" ""
### Behaviors on correct data format (stratified, 3-groups)
## Creation
tableOne <- CreateTableOne(vars = vars, strata = strata, data = dataFrame)
## print method
tableOne
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## summary method
summary(tableOne)
##
## ### Summary of continuous variables ###
##
## status: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 232 0 0.0 2333 994.7 2186.5 1456.5 2980 691.0 4795 0.6 -0.6
## age 232 0 0.0 50 10.4 49.8 41.4 57 26.3 78 0.1 -0.6
## bili 232 0 0.0 2 1.9 0.9 0.6 2 0.3 14 3.5 14.5
## chol 232 80 34.5 327 165.8 292.0 245.2 360 120.0 1480 4.3 24.8
## albumin 232 0 0.0 4 0.4 3.6 3.4 4 2.4 5 -0.2 0.4
## copper 232 65 28.0 67 57.1 52.0 33.5 78 4.0 412 3.1 13.5
## alk.phos 232 64 27.6 1578 1633.1 1107.5 794.0 1641 289.0 11047 3.6 14.7
## ast 232 64 27.6 107 52.8 94.5 71.3 129 26.4 457 2.4 11.2
## trig 232 81 34.9 112 48.3 104.0 80.0 134 44.0 382 1.7 5.9
## platelet 232 5 2.2 261 88.6 256.0 203.5 313 79.0 539 0.4 0.2
## protime 232 1 0.4 10 0.9 10.4 9.9 11 9.0 18 4.2 29.7
## ---------------------------------------------------------------------------------------
## status: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 25 0 0 1546 753.1 1435 901 2241 533.0 3092 0.60 -0.7
## age 25 0 0 42 6.3 41 36 47 33.0 56 0.47 -0.6
## bili 25 0 0 4 3.6 3 1 4 0.5 18 2.95 10.9
## chol 25 7 28 440 335.5 344 312 446 201.0 1712 3.55 13.8
## albumin 25 0 0 3 0.5 4 3 4 2.3 4 -0.53 0.3
## copper 25 6 24 124 100.1 102 69 130 32.0 444 2.25 5.6
## alk.phos 25 6 24 1535 837.7 1345 1028 1778 637.0 3681 1.47 1.8
## ast 25 6 24 130 36.9 127 114 151 54.2 205 0.09 0.3
## trig 25 7 28 134 70.5 124 86 146 33.0 322 1.25 1.8
## platelet 25 0 0 310 102.7 304 248 372 76.0 517 -0.11 0.2
## protime 25 0 0 10 0.5 10 10 11 9.6 11 0.52 -0.7
## ---------------------------------------------------------------------------------------
## status: 2
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 161 0 0.0 1377 1049.2 1083 597 2071 41.0 4191 0.83 -0.2
## age 161 0 0.0 54 9.8 53 47 61 30.9 77 -0.01 -0.6
## bili 161 0 0.0 6 5.8 3 1 7 0.3 28 1.68 2.4
## chol 161 47 29.2 416 275.0 339 258 454 127.0 1775 2.58 8.1
## albumin 161 0 0.0 3 0.5 3 3 4 2.0 5 -0.33 0.2
## copper 161 37 23.0 135 98.5 111 64 199 13.0 588 1.84 5.5
## alk.phos 161 36 22.4 2594 2677.1 1664 1029 2468 516.0 13862 2.30 5.1
## ast 161 36 22.4 142 58.4 135 99 177 28.4 338 0.81 1.0
## trig 161 48 29.8 140 79.3 122 91 171 49.0 598 2.51 10.3
## platelet 161 6 3.7 242 107.9 224 158 312 62.0 721 1.01 1.8
## protime 161 1 0.6 11 1.0 11 10 12 9.0 15 0.78 0.9
##
## p-values
## pNormal pNonNormal
## time 2.170e-18 1.070e-18
## age 4.513e-09 7.523e-09
## bili 4.006e-19 4.088e-26
## chol 3.118e-03 3.588e-03
## albumin 4.024e-07 2.875e-06
## copper 5.999e-12 2.935e-14
## alk.phos 1.655e-04 1.139e-05
## ast 7.554e-07 2.198e-08
## trig 1.401e-03 5.535e-03
## platelet 4.024e-03 8.025e-04
## protime 6.961e-13 1.987e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## var n miss p.miss level freq percent cum.percent
## trt 232 64 27.6 1 83 49.4 49.4
## 2 85 50.6 100.0
##
## ascites 232 64 27.6 0 167 99.4 99.4
## 1 1 0.6 100.0
##
## spiders 232 64 27.6 0 135 80.4 80.4
## 1 33 19.6 100.0
##
## edema 232 0 0.0 0 216 93.1 93.1
## 0.5 15 6.5 99.6
## 1 1 0.4 100.0
##
## stage 232 2 0.9 1 19 8.3 8.3
## 2 64 27.8 36.1
## 3 97 42.2 78.3
## 4 50 21.7 100.0
##
## ---------------------------------------------------------------------------------------
## status: 1
## var n miss p.miss level freq percent cum.percent
## trt 25 6 24.0 1 10 52.6 52.6
## 2 9 47.4 100.0
##
## ascites 25 6 24.0 0 19 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 25 6 24.0 0 14 73.7 73.7
## 1 5 26.3 100.0
##
## edema 25 0 0.0 0 22 88.0 88.0
## 0.5 3 12.0 100.0
## 1 0 0.0 100.0
##
## stage 25 0 0.0 1 0 0.0 0.0
## 2 5 20.0 20.0
## 3 10 40.0 60.0
## 4 10 40.0 100.0
##
## ---------------------------------------------------------------------------------------
## status: 2
## var n miss p.miss level freq percent cum.percent
## trt 161 36 22.4 1 65 52.0 52.0
## 2 60 48.0 100.0
##
## ascites 161 36 22.4 0 102 81.6 81.6
## 1 23 18.4 100.0
##
## spiders 161 36 22.4 0 73 58.4 58.4
## 1 52 41.6 100.0
##
## edema 161 0 0.0 0 116 72.0 72.0
## 0.5 26 16.1 88.2
## 1 19 11.8 100.0
##
## stage 161 4 2.5 1 2 1.3 1.3
## 2 23 14.6 15.9
## 3 48 30.6 46.5
## 4 84 53.5 100.0
##
##
## p-values
## pApprox pExact
## trt 0.89350974940 0.88422188365
## ascites 0.00000004847 0.00000001915
## spiders 0.00021408606 0.00019418862
## edema 0.00000003438 0.00000001955
## stage 0.00000001118 NA
## Five digits
summary(tableOne, digits = 5)
##
## ### Summary of continuous variables ###
##
## status: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 232 0 0.00000 2333.1552 994.65895 2186.500 1456.500 2979.5000 691.000 4795.000 0.59056 -0.58655
## age 232 0 0.00000 49.5103 10.42672 49.817 41.384 56.7577 26.278 78.439 0.10065 -0.57612
## bili 232 0 0.00000 1.5759 1.91026 0.900 0.600 1.6000 0.300 13.600 3.49318 14.50073
## chol 232 80 34.48276 326.5395 165.79729 292.000 245.250 360.0000 120.000 1480.000 4.29636 24.78537
## albumin 232 0 0.00000 3.5935 0.36041 3.600 3.360 3.8225 2.380 4.640 -0.21336 0.43831
## copper 232 65 28.01724 66.6108 57.05418 52.000 33.500 77.5000 4.000 412.000 3.06883 13.51984
## alk.phos 232 64 27.58621 1578.1274 1633.07092 1107.500 794.000 1641.0000 289.000 11046.600 3.59059 14.68030
## ast 232 64 27.58621 107.2860 52.79321 94.550 71.300 128.9875 26.350 457.250 2.38181 11.21994
## trig 232 81 34.91379 111.7881 48.27775 104.000 80.000 133.5000 44.000 382.000 1.71753 5.91846
## platelet 232 5 2.15517 261.1586 88.60787 256.000 203.500 313.0000 79.000 539.000 0.40679 0.21168
## protime 232 1 0.43103 10.4541 0.92458 10.400 9.900 10.8000 9.000 18.000 4.21195 29.69337
## ---------------------------------------------------------------------------------------
## status: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 25 0 0 1546.2000 753.07425 1435.000 901.000 2241.000 533.00 3092.000 0.596113 -0.69276
## age 25 0 0 41.6934 6.33435 40.999 36.493 47.181 32.95 55.986 0.470499 -0.58282
## bili 25 0 0 3.5560 3.59619 3.100 1.300 3.500 0.50 18.000 2.950805 10.88744
## chol 25 7 28 439.5000 335.53666 343.500 311.500 445.500 201.00 1712.000 3.553207 13.79115
## albumin 25 0 0 3.4876 0.45599 3.530 3.180 3.770 2.31 4.200 -0.530839 0.30509
## copper 25 6 24 124.0000 100.07830 102.000 69.000 129.500 32.00 444.000 2.250350 5.61963
## alk.phos 25 6 24 1535.2105 837.74808 1345.000 1028.500 1777.500 637.00 3681.000 1.469519 1.83947
## ast 25 6 24 130.1158 36.94593 127.000 113.925 151.125 54.25 205.000 0.088453 0.31448
## trig 25 7 28 133.9444 70.54700 124.000 85.750 145.750 33.00 322.000 1.248931 1.75650
## platelet 25 0 0 309.6000 102.65314 304.000 248.000 372.000 76.00 517.000 -0.112316 0.20185
## protime 25 0 0 10.3600 0.53697 10.300 10.000 10.700 9.60 11.400 0.516009 -0.73202
## ---------------------------------------------------------------------------------------
## status: 2
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 161 0 0.00000 1376.9317 1049.22797 1083.000 597.000 2071.000 41.000 4191.000 0.832780 -0.18926
## age 161 0 0.00000 53.9207 9.81423 53.498 46.628 61.295 30.864 76.709 -0.013216 -0.56233
## bili 161 0 0.00000 5.5391 5.83710 3.200 1.400 7.100 0.300 28.000 1.683878 2.35585
## chol 161 47 29.19255 415.7544 275.03076 339.000 257.500 454.000 127.000 1775.000 2.575250 8.11359
## albumin 161 0 0.00000 3.3606 0.46875 3.400 3.080 3.650 1.960 4.520 -0.328598 0.18383
## copper 161 37 22.98137 135.4113 98.49890 111.000 63.500 199.250 13.000 588.000 1.840411 5.50281
## alk.phos 161 36 22.36025 2594.3536 2677.10859 1664.000 1029.000 2468.000 516.000 13862.400 2.300147 5.07611
## ast 161 36 22.36025 141.9307 58.37952 134.850 99.330 176.700 28.380 338.000 0.807649 0.97760
## trig 161 48 29.81366 140.4867 79.25818 122.000 91.000 171.000 49.000 598.000 2.505344 10.28687
## platelet 161 6 3.72671 242.4903 107.87615 224.000 158.000 312.500 62.000 721.000 1.012383 1.80442
## protime 161 1 0.62112 11.1906 1.04904 11.000 10.475 11.800 9.000 15.200 0.776316 0.85574
##
## p-values
## pNormal pNonNormal
## time 2.170e-18 1.070e-18
## age 4.513e-09 7.523e-09
## bili 4.006e-19 4.088e-26
## chol 3.118e-03 3.588e-03
## albumin 4.024e-07 2.875e-06
## copper 5.999e-12 2.935e-14
## alk.phos 1.655e-04 1.139e-05
## ast 7.554e-07 2.198e-08
## trig 1.401e-03 5.535e-03
## platelet 4.024e-03 8.025e-04
## protime 6.961e-13 1.987e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## var n miss p.miss level freq percent cum.percent
## trt 232 64 27.58621 1 83 49.40476 49.40476
## 2 85 50.59524 100.00000
##
## ascites 232 64 27.58621 0 167 99.40476 99.40476
## 1 1 0.59524 100.00000
##
## spiders 232 64 27.58621 0 135 80.35714 80.35714
## 1 33 19.64286 100.00000
##
## edema 232 0 0.00000 0 216 93.10345 93.10345
## 0.5 15 6.46552 99.56897
## 1 1 0.43103 100.00000
##
## stage 232 2 0.86207 1 19 8.26087 8.26087
## 2 64 27.82609 36.08696
## 3 97 42.17391 78.26087
## 4 50 21.73913 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 1
## var n miss p.miss level freq percent cum.percent
## trt 25 6 24.00000 1 10 52.63158 52.63158
## 2 9 47.36842 100.00000
##
## ascites 25 6 24.00000 0 19 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 25 6 24.00000 0 14 73.68421 73.68421
## 1 5 26.31579 100.00000
##
## edema 25 0 0.00000 0 22 88.00000 88.00000
## 0.5 3 12.00000 100.00000
## 1 0 0.00000 100.00000
##
## stage 25 0 0.00000 1 0 0.00000 0.00000
## 2 5 20.00000 20.00000
## 3 10 40.00000 60.00000
## 4 10 40.00000 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 2
## var n miss p.miss level freq percent cum.percent
## trt 161 36 22.36025 1 65 52.00000 52.00000
## 2 60 48.00000 100.00000
##
## ascites 161 36 22.36025 0 102 81.60000 81.60000
## 1 23 18.40000 100.00000
##
## spiders 161 36 22.36025 0 73 58.40000 58.40000
## 1 52 41.60000 100.00000
##
## edema 161 0 0.00000 0 116 72.04969 72.04969
## 0.5 26 16.14907 88.19876
## 1 19 11.80124 100.00000
##
## stage 161 4 2.48447 1 2 1.27389 1.27389
## 2 23 14.64968 15.92357
## 3 48 30.57325 46.49682
## 4 84 53.50318 100.00000
##
##
## p-values
## pApprox pExact
## trt 0.89350974940 0.88422188365
## ascites 0.00000004847 0.00000001915
## spiders 0.00021408606 0.00019418862
## edema 0.00000003438 0.00000001955
## stage 0.00000001118 NA
## print method by default
print(tableOne)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## Five digits
print(tableOne, digits = 5)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## All nonnormal
print(tableOne, nonnormal = TRUE)
## Stratified by status
## 0 1 2 p
## n 232 25 161
## time (median [IQR]) 2186.50 [1456.50, 2979.50] 1435.00 [901.00, 2241.00] 1083.00 [597.00, 2071.00] <0.001
## age (median [IQR]) 49.82 [41.38, 56.76] 41.00 [36.49, 47.18] 53.50 [46.63, 61.30] <0.001
## bili (median [IQR]) 0.90 [0.60, 1.60] 3.10 [1.30, 3.50] 3.20 [1.40, 7.10] <0.001
## chol (median [IQR]) 292.00 [245.25, 360.00] 343.50 [311.50, 445.50] 339.00 [257.50, 454.00] 0.004
## albumin (median [IQR]) 3.60 [3.36, 3.82] 3.53 [3.18, 3.77] 3.40 [3.08, 3.65] <0.001
## copper (median [IQR]) 52.00 [33.50, 77.50] 102.00 [69.00, 129.50] 111.00 [63.50, 199.25] <0.001
## alk.phos (median [IQR]) 1107.50 [794.00, 1641.00] 1345.00 [1028.50, 1777.50] 1664.00 [1029.00, 2468.00] <0.001
## ast (median [IQR]) 94.55 [71.30, 128.99] 127.00 [113.93, 151.12] 134.85 [99.33, 176.70] <0.001
## trig (median [IQR]) 104.00 [80.00, 133.50] 124.00 [85.75, 145.75] 122.00 [91.00, 171.00] 0.006
## platelet (median [IQR]) 256.00 [203.50, 313.00] 304.00 [248.00, 372.00] 224.00 [158.00, 312.50] 0.001
## protime (median [IQR]) 10.40 [9.90, 10.80] 10.30 [10.00, 10.70] 11.00 [10.47, 11.80] <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## Stratified by status
## test
## n
## time (median [IQR]) nonnorm
## age (median [IQR]) nonnorm
## bili (median [IQR]) nonnorm
## chol (median [IQR]) nonnorm
## albumin (median [IQR]) nonnorm
## copper (median [IQR]) nonnorm
## alk.phos (median [IQR]) nonnorm
## ast (median [IQR]) nonnorm
## trig (median [IQR]) nonnorm
## platelet (median [IQR]) nonnorm
## protime (median [IQR]) nonnorm
## trt = 2 (%)
## ascites = 1 (%)
## spiders = 1 (%)
## edema (%)
## 0
## 0.5
## 1
## stage (%)
## 1
## 2
## 3
## 4
## quote
print(tableOne, quote = TRUE)
## "Stratified by status"
## "" "0" "1" "2" "p" "test"
## "n" "232" "25" "161" "" ""
## "time (mean (sd))" "2333.16 (994.66)" "1546.20 (753.07)" "1376.93 (1049.23)" "<0.001" ""
## "age (mean (sd))" " 49.51 (10.43)" " 41.69 (6.33)" " 53.92 (9.81)" "<0.001" ""
## "bili (mean (sd))" " 1.58 (1.91)" " 3.56 (3.60)" " 5.54 (5.84)" "<0.001" ""
## "chol (mean (sd))" " 326.54 (165.80)" " 439.50 (335.54)" " 415.75 (275.03)" " 0.003" ""
## "albumin (mean (sd))" " 3.59 (0.36)" " 3.49 (0.46)" " 3.36 (0.47)" "<0.001" ""
## "copper (mean (sd))" " 66.61 (57.05)" " 124.00 (100.08)" " 135.41 (98.50)" "<0.001" ""
## "alk.phos (mean (sd))" "1578.13 (1633.07)" "1535.21 (837.75)" "2594.35 (2677.11)" "<0.001" ""
## "ast (mean (sd))" " 107.29 (52.79)" " 130.12 (36.95)" " 141.93 (58.38)" "<0.001" ""
## "trig (mean (sd))" " 111.79 (48.28)" " 133.94 (70.55)" " 140.49 (79.26)" " 0.001" ""
## "platelet (mean (sd))" " 261.16 (88.61)" " 309.60 (102.65)" " 242.49 (107.88)" " 0.004" ""
## "protime (mean (sd))" " 10.45 (0.92)" " 10.36 (0.54)" " 11.19 (1.05)" "<0.001" ""
## "trt = 2 (%)" " 85 (50.6) " " 9 (47.4) " " 60 (48.0) " " 0.894" ""
## "ascites = 1 (%)" " 1 (0.6) " " 0 (0.0) " " 23 (18.4) " "<0.001" ""
## "spiders = 1 (%)" " 33 (19.6) " " 5 (26.3) " " 52 (41.6) " "<0.001" ""
## "edema (%)" " " " " " " "<0.001" ""
## " 0" " 216 (93.1) " " 22 (88.0) " " 116 (72.0) " "" ""
## " 0.5" " 15 ( 6.5) " " 3 (12.0) " " 26 (16.1) " "" ""
## " 1" " 1 ( 0.4) " " 0 ( 0.0) " " 19 (11.8) " "" ""
## "stage (%)" " " " " " " "<0.001" ""
## " 1" " 19 ( 8.3) " " 0 ( 0.0) " " 2 ( 1.3) " "" ""
## " 2" " 64 (27.8) " " 5 (20.0) " " 23 (14.6) " "" ""
## " 3" " 97 (42.2) " " 10 (40.0) " " 48 (30.6) " "" ""
## " 4" " 50 (21.7) " " 10 (40.0) " " 84 (53.5) " "" ""
## Partially nonnormal
print(tableOne, nonnormal = nonNormalVars)
## Stratified by status
## 0 1 2 p
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (median [IQR]) 0.90 [0.60, 1.60] 3.10 [1.30, 3.50] 3.20 [1.40, 7.10] <0.001
## chol (median [IQR]) 292.00 [245.25, 360.00] 343.50 [311.50, 445.50] 339.00 [257.50, 454.00] 0.004
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (median [IQR]) 52.00 [33.50, 77.50] 102.00 [69.00, 129.50] 111.00 [63.50, 199.25] <0.001
## alk.phos (median [IQR]) 1107.50 [794.00, 1641.00] 1345.00 [1028.50, 1777.50] 1664.00 [1029.00, 2468.00] <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (median [IQR]) 104.00 [80.00, 133.50] 124.00 [85.75, 145.75] 122.00 [91.00, 171.00] 0.006
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (median [IQR]) 10.40 [9.90, 10.80] 10.30 [10.00, 10.70] 11.00 [10.47, 11.80] <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## Stratified by status
## test
## n
## time (mean (sd))
## age (mean (sd))
## bili (median [IQR]) nonnorm
## chol (median [IQR]) nonnorm
## albumin (mean (sd))
## copper (median [IQR]) nonnorm
## alk.phos (median [IQR]) nonnorm
## ast (mean (sd))
## trig (median [IQR]) nonnorm
## platelet (mean (sd))
## protime (median [IQR]) nonnorm
## trt = 2 (%)
## ascites = 1 (%)
## spiders = 1 (%)
## edema (%)
## 0
## 0.5
## 1
## stage (%)
## 1
## 2
## 3
## 4
## Partially nonno# showAllLevels
print(tableOne, showAllLevels = TRUE)
## Stratified by status
## level 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt (%) 1 83 (49.4) 10 (52.6) 65 (52.0) 0.894
## 2 85 (50.6) 9 (47.4) 60 (48.0)
## ascites (%) 0 167 (99.4) 19 (100.0) 102 (81.6) <0.001
## 1 1 ( 0.6) 0 ( 0.0) 23 (18.4)
## spiders (%) 0 135 (80.4) 14 (73.7) 73 (58.4) <0.001
## 1 33 (19.6) 5 (26.3) 52 (41.6)
## edema (%) 0 216 (93.1) 22 (88.0) 116 (72.0) <0.001
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3) <0.001
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## test
print(tableOne, test = FALSE)
## Stratified by status
## 0 1 2
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23)
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81)
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84)
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03)
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47)
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50)
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11)
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38)
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26)
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88)
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05)
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0)
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4)
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6)
## edema (%)
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%)
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## pDigits
print(tableOne, pDigits = 5)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## No explanation
print(tableOne, explain = FALSE)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## No spaces
print(tableOne, noSpaces = TRUE, quote = TRUE)
## "Stratified by status"
## "" "0" "1" "2" "p" "test"
## "n" "232" "25" "161" "" ""
## "time (mean (sd))" "2333.16 (994.66)" "1546.20 (753.07)" "1376.93 (1049.23)" "<0.001" ""
## "age (mean (sd))" "49.51 (10.43)" "41.69 (6.33)" "53.92 (9.81)" "<0.001" ""
## "bili (mean (sd))" "1.58 (1.91)" "3.56 (3.60)" "5.54 (5.84)" "<0.001" ""
## "chol (mean (sd))" "326.54 (165.80)" "439.50 (335.54)" "415.75 (275.03)" "0.003" ""
## "albumin (mean (sd))" "3.59 (0.36)" "3.49 (0.46)" "3.36 (0.47)" "<0.001" ""
## "copper (mean (sd))" "66.61 (57.05)" "124.00 (100.08)" "135.41 (98.50)" "<0.001" ""
## "alk.phos (mean (sd))" "1578.13 (1633.07)" "1535.21 (837.75)" "2594.35 (2677.11)" "<0.001" ""
## "ast (mean (sd))" "107.29 (52.79)" "130.12 (36.95)" "141.93 (58.38)" "<0.001" ""
## "trig (mean (sd))" "111.79 (48.28)" "133.94 (70.55)" "140.49 (79.26)" "0.001" ""
## "platelet (mean (sd))" "261.16 (88.61)" "309.60 (102.65)" "242.49 (107.88)" "0.004" ""
## "protime (mean (sd))" "10.45 (0.92)" "10.36 (0.54)" "11.19 (1.05)" "<0.001" ""
## "trt = 2 (%)" "85 (50.6)" "9 (47.4)" "60 (48.0)" "0.894" ""
## "ascites = 1 (%)" "1 (0.6)" "0 (0.0)" "23 (18.4)" "<0.001" ""
## "spiders = 1 (%)" "33 (19.6)" "5 (26.3)" "52 (41.6)" "<0.001" ""
## "edema (%)" "" "" "" "<0.001" ""
## " 0" "216 (93.1)" "22 (88.0)" "116 (72.0)" "" ""
## " 0.5" "15 (6.5)" "3 (12.0)" "26 (16.1)" "" ""
## " 1" "1 (0.4)" "0 (0.0)" "19 (11.8)" "" ""
## "stage (%)" "" "" "" "<0.001" ""
## " 1" "19 (8.3)" "0 (0.0)" "2 (1.3)" "" ""
## " 2" "64 (27.8)" "5 (20.0)" "23 (14.6)" "" ""
## " 3" "97 (42.2)" "10 (40.0)" "48 (30.6)" "" ""
## " 4" "50 (21.7)" "10 (40.0)" "84 (53.5)" "" ""
### Behaviors on correct data format (stratified, 2-variables)
## Two variables
tableOne <- CreateTableOne(vars = vars, strata = strataTwoVars, data = dataFrame)
## print method
tableOne
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## summary method
summary(tableOne)
##
## ### Summary of continuous variables ###
##
## status: 0
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 17 0 0 2462 1217.3 1899 1419.0 3445 1129.0 4459 0.58 -1.28
## age 17 0 0 56 10.6 53 49.1 61 41.0 78 0.82 -0.03
## bili 17 0 0 3 2.6 2 0.9 3 0.6 9 1.35 0.41
## chol 17 6 35 368 235.0 252 242.5 403 216.0 1000 2.30 5.61
## albumin 17 0 0 3 0.4 4 3.1 4 2.4 4 -0.94 1.18
## copper 17 6 35 129 113.1 84 57.0 168 25.0 380 1.38 1.25
## alk.phos 17 6 35 2482 3052.9 1098 913.0 2311 601.0 10397 2.17 4.50
## ast 17 6 35 112 50.9 108 62.8 143 56.8 193 0.45 -1.14
## trig 17 6 35 132 33.7 128 112.5 154 83.0 188 0.27 -0.75
## platelet 17 1 6 213 72.2 212 170.5 267 92.0 336 -0.07 -0.72
## protime 17 0 0 11 0.8 11 10.6 11 9.8 13 1.08 1.92
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0 1148 785.8 877 705 1455 533 2033 1.4 NaN
## age 3 0 0 42 12.0 35 35 46 35 56 1.7 NaN
## bili 3 0 0 2 1.2 2 2 3 1 4 -0.1 NaN
## chol 3 0 0 415 201.3 325 300 486 275 646 1.6 NaN
## albumin 3 0 0 4 0.3 4 4 4 3 4 -1.2 NaN
## copper 3 0 0 215 198.0 102 101 273 100 444 1.7 NaN
## alk.phos 3 0 0 921 196.5 855 810 998 766 1142 1.3 NaN
## ast 3 0 0 111 31.0 127 101 129 75 130 -1.7 NaN
## trig 3 0 0 165 64.6 194 142 202 91 210 -1.6 NaN
## platelet 3 0 0 289 65.2 306 262 325 217 344 -1.1 NaN
## protime 3 0 0 11 0.5 11 10 11 10 11 1.1 NaN
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 24 0 0 1585 1120.5 1257 867 1906 140.0 4191 1.11 0.5
## age 24 0 0 57 10.3 58 51 67 33.5 72 -0.40 -0.6
## bili 24 0 0 3 2.2 2 2 4 0.8 10 1.59 2.0
## chol 24 3 12 352 149.2 331 247 426 151.0 660 0.52 -0.4
## albumin 24 0 0 4 0.5 4 3 4 2.3 4 -0.95 0.8
## copper 24 2 8 159 78.6 165 97 215 13.0 290 -0.11 -1.0
## alk.phos 24 2 8 2189 2243.2 1452 974 2387 516.0 10165 2.55 7.3
## ast 24 2 8 128 47.4 125 89 170 46.5 222 0.31 -0.7
## trig 24 3 12 130 59.0 122 91 155 49.0 242 0.59 -0.7
## platelet 24 0 0 236 93.9 226 155 328 70.0 394 0.01 -1.2
## protime 24 0 0 11 1.1 11 10 11 9.7 14 1.39 2.3
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 215 0 0.0 2323 977.6 2195.0 1469.0 2918 691.0 4795 0.58 -0.5
## age 215 0 0.0 49 10.3 49.0 40.9 57 26.3 75 0.03 -0.8
## bili 215 0 0.0 1 1.8 0.9 0.6 1 0.3 14 3.91 18.6
## chol 215 74 34.4 323 159.9 294.0 246.0 360 120.0 1480 4.68 29.8
## albumin 215 0 0.0 4 0.4 3.6 3.4 4 2.5 5 -0.10 0.2
## copper 215 59 27.4 62 48.7 51.5 33.0 75 4.0 412 3.15 17.3
## alk.phos 215 58 27.0 1515 1481.8 1110.0 794.0 1637 289.0 11047 3.75 16.8
## ast 215 58 27.0 107 53.1 93.0 72.8 129 26.4 457 2.50 11.9
## trig 215 75 34.9 110 49.0 101.0 76.8 133 44.0 382 1.82 6.3
## platelet 215 4 1.9 265 88.8 256.0 209.0 318 79.0 539 0.40 0.2
## protime 215 1 0.5 10 0.9 10.3 9.9 11 9.0 18 4.53 32.8
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 22 0 0 1601 750.7 1441 1033 2260 617.0 3092 0.608 -0.73
## age 22 0 0 42 5.7 41 37 47 33.0 52 0.111 -1.03
## bili 22 0 0 4 3.8 3 1 4 0.5 18 2.770 9.54
## chol 22 7 32 444 361.6 348 313 441 201.0 1712 3.484 12.87
## albumin 22 0 0 3 0.5 4 3 4 2.3 4 -0.400 0.20
## copper 22 6 27 107 69.3 98 58 126 32.0 308 1.684 3.93
## alk.phos 22 6 27 1650 864.5 1407 1132 1932 637.0 3681 1.279 1.26
## ast 22 6 27 134 37.7 124 114 153 54.2 205 0.009 0.35
## trig 22 7 32 128 72.1 118 81 142 33.0 322 1.629 3.16
## platelet 22 0 0 312 107.6 301 252 384 76.0 517 -0.167 0.05
## protime 22 0 0 10 0.5 10 10 11 9.6 11 0.640 -0.56
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 137 0 0.0 1341 1036.3 1037 549 2071 41.0 3853 0.78 -0.4
## age 137 0 0.0 53 9.6 53 46 61 30.9 77 0.03 -0.5
## bili 137 0 0.0 6 6.2 3 1 7 0.3 28 1.50 1.6
## chol 137 44 32.1 430 294.8 344 260 468 127.0 1775 2.45 6.9
## albumin 137 0 0.0 3 0.5 3 3 4 2.0 5 -0.27 0.4
## copper 137 35 25.5 130 101.9 102 58 173 14.0 588 2.10 6.4
## alk.phos 137 34 24.8 2681 2762.9 1787 1057 2562 559.0 13862 2.26 4.8
## ast 137 34 24.8 145 60.3 137 103 177 28.4 338 0.81 0.9
## trig 137 45 32.8 143 83.3 121 92 171 50.0 598 2.58 10.1
## platelet 137 6 4.4 244 110.5 224 160 304 62.0 721 1.11 2.0
## protime 137 1 0.7 11 1.0 11 11 12 9.0 15 0.69 0.8
##
## p-values
## pNormal pNonNormal
## time 1.891e-16 1.128e-16
## age 2.380e-09 1.699e-08
## bili 2.610e-19 1.499e-24
## chol 1.615e-02 4.032e-02
## albumin 2.891e-07 1.164e-06
## copper 6.640e-13 3.932e-14
## alk.phos 8.635e-04 7.643e-05
## ast 1.309e-05 6.230e-07
## trig 7.392e-03 7.804e-03
## platelet 8.655e-03 2.246e-03
## protime 3.480e-12 1.221e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 17 6 35.3 1 4 36.4 36.4
## 2 7 63.6 100.0
##
## ascites 17 6 35.3 0 10 90.9 90.9
## 1 1 9.1 100.0
##
## spiders 17 6 35.3 0 9 81.8 81.8
## 1 2 18.2 100.0
##
## edema 17 0 0.0 0 16 94.1 94.1
## 0.5 1 5.9 100.0
## 1 0 0.0 100.0
##
## stage 17 0 0.0 1 2 11.8 11.8
## 2 3 17.6 29.4
## 3 5 29.4 58.8
## 4 7 41.2 100.0
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.0 1 3 100.0 100.0
## 2 0 0.0 100.0
##
## ascites 3 0 0.0 0 3 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 3 0 0.0 0 3 100.0 100.0
## 1 0 0.0 100.0
##
## edema 3 0 0.0 0 3 100.0 100.0
## 0.5 0 0.0 100.0
## 1 0 0.0 100.0
##
## stage 3 0 0.0 1 0 0.0 0.0
## 2 0 0.0 0.0
## 3 2 66.7 66.7
## 4 1 33.3 100.0
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 24 2 8.3 1 14 63.6 63.6
## 2 8 36.4 100.0
##
## ascites 24 2 8.3 0 20 90.9 90.9
## 1 2 9.1 100.0
##
## spiders 24 2 8.3 0 20 90.9 90.9
## 1 2 9.1 100.0
##
## edema 24 0 0.0 0 17 70.8 70.8
## 0.5 4 16.7 87.5
## 1 3 12.5 100.0
##
## stage 24 0 0.0 1 1 4.2 4.2
## 2 5 20.8 25.0
## 3 9 37.5 62.5
## 4 9 37.5 100.0
##
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 215 58 27.0 1 79 50.3 50.3
## 2 78 49.7 100.0
##
## ascites 215 58 27.0 0 157 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 215 58 27.0 0 126 80.3 80.3
## 1 31 19.7 100.0
##
## edema 215 0 0.0 0 200 93.0 93.0
## 0.5 14 6.5 99.5
## 1 1 0.5 100.0
##
## stage 215 2 0.9 1 17 8.0 8.0
## 2 61 28.6 36.6
## 3 92 43.2 79.8
## 4 43 20.2 100.0
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 22 6 27.3 1 7 43.8 43.8
## 2 9 56.2 100.0
##
## ascites 22 6 27.3 0 16 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 22 6 27.3 0 11 68.8 68.8
## 1 5 31.2 100.0
##
## edema 22 0 0.0 0 19 86.4 86.4
## 0.5 3 13.6 100.0
## 1 0 0.0 100.0
##
## stage 22 0 0.0 1 0 0.0 0.0
## 2 5 22.7 22.7
## 3 8 36.4 59.1
## 4 9 40.9 100.0
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 137 34 24.8 1 51 49.5 49.5
## 2 52 50.5 100.0
##
## ascites 137 34 24.8 0 82 79.6 79.6
## 1 21 20.4 100.0
##
## spiders 137 34 24.8 0 53 51.5 51.5
## 1 50 48.5 100.0
##
## edema 137 0 0.0 0 99 72.3 72.3
## 0.5 22 16.1 88.3
## 1 16 11.7 100.0
##
## stage 137 4 2.9 1 1 0.8 0.8
## 2 18 13.5 14.3
## 3 39 29.3 43.6
## 4 75 56.4 100.0
##
##
## p-values
## pApprox pExact
## trt 0.3396357021 0.38716295778
## ascites 0.0000003538 0.00000003965
## spiders 0.0000063333 0.00000475377
## edema 0.0000109942 NA
## stage 0.0000008605 NA
## Five digits
summary(tableOne, digits = 5)
##
## ### Summary of continuous variables ###
##
## status: 0
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 17 0 0.0000 2462.1765 1217.32721 1899.00 1419.000 3445.000 1129.000 4459.000 0.580553 -1.275652
## age 17 0 0.0000 55.6860 10.64563 52.89 49.136 60.999 40.999 78.439 0.817549 -0.029683
## bili 17 0 0.0000 2.6294 2.61576 1.70 0.900 3.000 0.600 8.600 1.345458 0.408840
## chol 17 6 35.2941 367.9091 234.98572 252.00 242.500 403.000 216.000 1000.000 2.303585 5.609269
## albumin 17 0 0.0000 3.4718 0.42631 3.59 3.150 3.730 2.380 4.080 -0.937381 1.179027
## copper 17 6 35.2941 128.8182 113.07238 84.00 57.000 168.000 25.000 380.000 1.380101 1.250490
## alk.phos 17 6 35.2941 2482.2545 3052.93587 1098.00 913.000 2311.000 601.000 10396.800 2.174870 4.499362
## ast 17 6 35.2941 112.2773 50.94183 108.50 62.775 142.550 56.760 193.000 0.446108 -1.139098
## trig 17 6 35.2941 131.8182 33.72779 128.00 112.500 153.500 83.000 188.000 0.274446 -0.745906
## platelet 17 1 5.8824 213.4375 72.17291 212.50 170.500 267.000 92.000 336.000 -0.066326 -0.721429
## protime 17 0 0.0000 10.9412 0.79926 10.90 10.600 11.200 9.800 13.000 1.076701 1.924353
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0 1147.6667 785.77690 877.000 705.000 1455.000 533.000 2033.000 1.36614 NaN
## age 3 0 0 42.1629 11.97184 35.351 35.251 45.669 35.151 55.986 1.73151 NaN
## bili 3 0 0 2.3667 1.15036 2.400 1.800 2.950 1.200 3.500 -0.13028 NaN
## chol 3 0 0 415.3333 201.32147 325.000 300.000 485.500 275.000 646.000 1.61263 NaN
## albumin 3 0 0 3.7467 0.28431 3.830 3.630 3.905 3.430 3.980 -1.20566 NaN
## copper 3 0 0 215.3333 198.03367 102.000 101.000 273.000 100.000 444.000 1.73185 NaN
## alk.phos 3 0 0 921.0000 196.49682 855.000 810.500 998.500 766.000 1142.000 1.34095 NaN
## ast 3 0 0 110.7333 30.98731 127.000 101.000 128.600 75.000 130.200 -1.71129 NaN
## trig 3 0 0 165.0000 64.58328 194.000 142.500 202.000 91.000 210.000 -1.61322 NaN
## platelet 3 0 0 289.0000 65.18435 306.000 261.500 325.000 217.000 344.000 -1.09377 NaN
## protime 3 0 0 10.7333 0.51316 10.600 10.450 10.950 10.300 11.300 1.09029 NaN
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 24 0 0.0000 1584.8750 1120.46063 1257.000 867.2500 1906.0000 140.000 4191.000 1.111794 0.54917
## age 24 0 0.0000 57.4217 10.34449 57.587 51.0726 67.4517 33.476 71.893 -0.402994 -0.57012
## bili 24 0 0.0000 3.0958 2.24818 2.300 1.5750 3.6250 0.800 9.500 1.585959 1.97358
## chol 24 3 12.5000 352.0476 149.17757 331.000 247.0000 426.0000 151.000 660.000 0.515581 -0.44479
## albumin 24 0 0.0000 3.5533 0.49715 3.665 3.3275 3.9325 2.270 4.300 -0.946851 0.80931
## copper 24 2 8.3333 158.6818 78.57201 165.000 96.7500 215.2500 13.000 290.000 -0.113305 -0.99399
## alk.phos 24 2 8.3333 2189.0182 2243.18335 1452.000 973.7500 2387.0000 516.000 10165.000 2.551074 7.31597
## ast 24 2 8.3333 128.3823 47.39408 124.775 88.5250 170.5000 46.500 221.880 0.313131 -0.73906
## trig 24 3 12.5000 129.7619 58.95499 122.000 91.0000 155.0000 49.000 242.000 0.586741 -0.68788
## platelet 24 0 0.0000 235.7083 93.91785 225.500 154.7500 328.0000 70.000 394.000 0.012464 -1.16878
## protime 24 0 0.0000 10.9667 1.07164 10.950 10.1750 11.3250 9.700 14.100 1.390936 2.25229
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 215 0 0.00000 2322.9535 977.60792 2195.000 1469.000 2917.500 691.000 4795.000 0.582318 -0.53007
## age 215 0 0.00000 49.0220 10.27669 48.999 40.895 56.600 26.278 75.012 0.033629 -0.78458
## bili 215 0 0.00000 1.4926 1.82545 0.900 0.600 1.450 0.300 13.600 3.914967 18.57538
## chol 215 74 34.41860 323.3121 159.87321 294.000 246.000 360.000 120.000 1480.000 4.678667 29.78599
## albumin 215 0 0.00000 3.6031 0.35405 3.600 3.370 3.825 2.480 4.640 -0.100353 0.23378
## copper 215 59 27.44186 62.2244 48.65528 51.500 33.000 75.250 4.000 412.000 3.148308 17.31419
## alk.phos 215 58 26.97674 1514.7809 1481.83371 1110.000 794.000 1637.000 289.000 11046.600 3.748137 16.81930
## ast 215 58 26.97674 106.9362 53.06053 93.000 72.850 128.650 26.350 457.250 2.495647 11.91733
## trig 215 75 34.88372 110.2143 48.98066 101.000 76.750 133.000 44.000 382.000 1.821197 6.26465
## platelet 215 4 1.86047 264.7773 88.83030 256.000 209.000 317.500 79.000 539.000 0.402233 0.19191
## protime 215 1 0.46512 10.4154 0.92447 10.300 9.900 10.700 9.000 18.000 4.531750 32.78717
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 22 0 0.000 1600.5455 750.69959 1441.000 1033.250 2260.5000 617.00 3092.0 0.6082827 -0.732399
## age 22 0 0.000 41.6294 5.67188 41.076 37.276 46.9815 32.95 52.0 0.1106357 -1.025452
## bili 22 0 0.000 3.7182 3.79795 3.150 1.375 4.1750 0.50 18.0 2.7702682 9.541192
## chol 22 7 31.818 444.3333 361.62128 348.000 313.000 441.0000 201.00 1712.0 3.4838018 12.874590
## albumin 22 0 0.000 3.4523 0.46801 3.520 3.135 3.7575 2.31 4.2 -0.3996645 0.202256
## copper 22 6 27.273 106.8750 69.34443 98.000 58.500 126.2500 32.00 308.0 1.6840068 3.926654
## alk.phos 22 6 27.273 1650.3750 864.54619 1407.000 1131.750 1932.0000 637.00 3681.0 1.2790073 1.261894
## ast 22 6 27.273 133.7500 37.69283 124.000 114.312 153.4500 54.25 205.0 0.0087982 0.354826
## trig 22 7 31.818 127.7333 72.10753 118.000 81.000 142.0000 33.00 322.0 1.6286698 3.156473
## platelet 22 0 0.000 312.4091 107.56157 301.000 252.000 384.0000 76.00 517.0 -0.1674101 0.053235
## protime 22 0 0.000 10.3091 0.53087 10.100 10.000 10.6500 9.60 11.4 0.6395260 -0.557078
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 137 0 0.00000 1340.5036 1036.27652 1037.000 549.00 2071.000 41.000 3853.000 0.782925 -0.36646
## age 137 0 0.00000 53.3074 9.62692 52.999 46.39 60.706 30.864 76.709 0.031561 -0.46043
## bili 137 0 0.00000 5.9672 6.16374 3.400 1.40 7.300 0.300 28.000 1.500648 1.60901
## chol 137 44 32.11679 430.1398 294.84674 344.000 260.00 468.000 127.000 1775.000 2.453714 6.88168
## albumin 137 0 0.00000 3.3268 0.45716 3.360 3.08 3.600 1.960 4.520 -0.270966 0.35446
## copper 137 35 25.54745 130.3922 101.92321 102.500 58.00 172.750 14.000 588.000 2.101921 6.35488
## alk.phos 137 34 24.81752 2680.9301 2762.92155 1787.000 1057.00 2562.000 559.000 13862.400 2.257705 4.80501
## ast 137 34 24.81752 144.8246 60.27241 136.740 102.88 177.475 28.380 338.000 0.809307 0.92783
## trig 137 45 32.84672 142.9348 83.27682 121.000 91.75 171.250 50.000 598.000 2.580792 10.13232
## platelet 137 6 4.37956 243.7328 110.52183 224.000 160.00 304.000 62.000 721.000 1.106298 1.97335
## protime 137 1 0.72993 11.2301 1.04402 11.050 10.60 11.800 9.000 15.200 0.694927 0.83719
##
## p-values
## pNormal pNonNormal
## time 1.891e-16 1.128e-16
## age 2.380e-09 1.699e-08
## bili 2.610e-19 1.499e-24
## chol 1.615e-02 4.032e-02
## albumin 2.891e-07 1.164e-06
## copper 6.640e-13 3.932e-14
## alk.phos 8.635e-04 7.643e-05
## ast 1.309e-05 6.230e-07
## trig 7.392e-03 7.804e-03
## platelet 8.655e-03 2.246e-03
## protime 3.480e-12 1.221e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 17 6 35.29412 1 4 36.36364 36.36364
## 2 7 63.63636 100.00000
##
## ascites 17 6 35.29412 0 10 90.90909 90.90909
## 1 1 9.09091 100.00000
##
## spiders 17 6 35.29412 0 9 81.81818 81.81818
## 1 2 18.18182 100.00000
##
## edema 17 0 0.00000 0 16 94.11765 94.11765
## 0.5 1 5.88235 100.00000
## 1 0 0.00000 100.00000
##
## stage 17 0 0.00000 1 2 11.76471 11.76471
## 2 3 17.64706 29.41176
## 3 5 29.41176 58.82353
## 4 7 41.17647 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.00000 1 3 100.00000 100.00000
## 2 0 0.00000 100.00000
##
## ascites 3 0 0.00000 0 3 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 3 0 0.00000 0 3 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## edema 3 0 0.00000 0 3 100.00000 100.00000
## 0.5 0 0.00000 100.00000
## 1 0 0.00000 100.00000
##
## stage 3 0 0.00000 1 0 0.00000 0.00000
## 2 0 0.00000 0.00000
## 3 2 66.66667 66.66667
## 4 1 33.33333 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 24 2 8.33333 1 14 63.63636 63.63636
## 2 8 36.36364 100.00000
##
## ascites 24 2 8.33333 0 20 90.90909 90.90909
## 1 2 9.09091 100.00000
##
## spiders 24 2 8.33333 0 20 90.90909 90.90909
## 1 2 9.09091 100.00000
##
## edema 24 0 0.00000 0 17 70.83333 70.83333
## 0.5 4 16.66667 87.50000
## 1 3 12.50000 100.00000
##
## stage 24 0 0.00000 1 1 4.16667 4.16667
## 2 5 20.83333 25.00000
## 3 9 37.50000 62.50000
## 4 9 37.50000 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 215 58 26.97674 1 79 50.31847 50.31847
## 2 78 49.68153 100.00000
##
## ascites 215 58 26.97674 0 157 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 215 58 26.97674 0 126 80.25478 80.25478
## 1 31 19.74522 100.00000
##
## edema 215 0 0.00000 0 200 93.02326 93.02326
## 0.5 14 6.51163 99.53488
## 1 1 0.46512 100.00000
##
## stage 215 2 0.93023 1 17 7.98122 7.98122
## 2 61 28.63850 36.61972
## 3 92 43.19249 79.81221
## 4 43 20.18779 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 22 6 27.27273 1 7 43.75000 43.75000
## 2 9 56.25000 100.00000
##
## ascites 22 6 27.27273 0 16 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 22 6 27.27273 0 11 68.75000 68.75000
## 1 5 31.25000 100.00000
##
## edema 22 0 0.00000 0 19 86.36364 86.36364
## 0.5 3 13.63636 100.00000
## 1 0 0.00000 100.00000
##
## stage 22 0 0.00000 1 0 0.00000 0.00000
## 2 5 22.72727 22.72727
## 3 8 36.36364 59.09091
## 4 9 40.90909 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 137 34 24.81752 1 51 49.51456 49.51456
## 2 52 50.48544 100.00000
##
## ascites 137 34 24.81752 0 82 79.61165 79.61165
## 1 21 20.38835 100.00000
##
## spiders 137 34 24.81752 0 53 51.45631 51.45631
## 1 50 48.54369 100.00000
##
## edema 137 0 0.00000 0 99 72.26277 72.26277
## 0.5 22 16.05839 88.32117
## 1 16 11.67883 100.00000
##
## stage 137 4 2.91971 1 1 0.75188 0.75188
## 2 18 13.53383 14.28571
## 3 39 29.32331 43.60902
## 4 75 56.39098 100.00000
##
##
## p-values
## pApprox pExact
## trt 0.3396357021 0.38716295778
## ascites 0.0000003538 0.00000003965
## spiders 0.0000063333 0.00000475377
## edema 0.0000109942 NA
## stage 0.0000008605 NA
## print method by default
print(tableOne)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## Five digits
print(tableOne, digits = 5)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## All nonnormal
print(tableOne, nonnormal = TRUE)
## Stratified by status:sex
## 0:m 1:m 2:m
## n 17 3 24
## time (median [IQR]) 1899.00 [1419.00, 3445.00] 877.00 [705.00, 1455.00] 1257.00 [867.25, 1906.00]
## age (median [IQR]) 52.89 [49.14, 61.00] 35.35 [35.25, 45.67] 57.59 [51.07, 67.45]
## bili (median [IQR]) 1.70 [0.90, 3.00] 2.40 [1.80, 2.95] 2.30 [1.58, 3.62]
## chol (median [IQR]) 252.00 [242.50, 403.00] 325.00 [300.00, 485.50] 331.00 [247.00, 426.00]
## albumin (median [IQR]) 3.59 [3.15, 3.73] 3.83 [3.63, 3.91] 3.67 [3.33, 3.93]
## copper (median [IQR]) 84.00 [57.00, 168.00] 102.00 [101.00, 273.00] 165.00 [96.75, 215.25]
## alk.phos (median [IQR]) 1098.00 [913.00, 2311.00] 855.00 [810.50, 998.50] 1452.00 [973.75, 2387.00]
## ast (median [IQR]) 108.50 [62.77, 142.55] 127.00 [101.00, 128.60] 124.78 [88.53, 170.50]
## trig (median [IQR]) 128.00 [112.50, 153.50] 194.00 [142.50, 202.00] 122.00 [91.00, 155.00]
## platelet (median [IQR]) 212.50 [170.50, 267.00] 306.00 [261.50, 325.00] 225.50 [154.75, 328.00]
## protime (median [IQR]) 10.90 [10.60, 11.20] 10.60 [10.45, 10.95] 10.95 [10.17, 11.33]
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8)
## 3 5 (29.4) 2 (66.7) 9 (37.5)
## 4 7 (41.2) 1 (33.3) 9 (37.5)
## Stratified by status:sex
## 0:f 1:f 2:f p
## n 215 22 137
## time (median [IQR]) 2195.00 [1469.00, 2917.50] 1441.00 [1033.25, 2260.50] 1037.00 [549.00, 2071.00] <0.001
## age (median [IQR]) 49.00 [40.90, 56.60] 41.08 [37.28, 46.98] 53.00 [46.39, 60.71] <0.001
## bili (median [IQR]) 0.90 [0.60, 1.45] 3.15 [1.38, 4.18] 3.40 [1.40, 7.30] <0.001
## chol (median [IQR]) 294.00 [246.00, 360.00] 348.00 [313.00, 441.00] 344.00 [260.00, 468.00] 0.040
## albumin (median [IQR]) 3.60 [3.37, 3.83] 3.52 [3.13, 3.76] 3.36 [3.08, 3.60] <0.001
## copper (median [IQR]) 51.50 [33.00, 75.25] 98.00 [58.50, 126.25] 102.50 [58.00, 172.75] <0.001
## alk.phos (median [IQR]) 1110.00 [794.00, 1637.00] 1407.00 [1131.75, 1932.00] 1787.00 [1057.00, 2562.00] <0.001
## ast (median [IQR]) 93.00 [72.85, 128.65] 124.00 [114.31, 153.45] 136.74 [102.88, 177.48] <0.001
## trig (median [IQR]) 101.00 [76.75, 133.00] 118.00 [81.00, 142.00] 121.00 [91.75, 171.25] 0.008
## platelet (median [IQR]) 256.00 [209.00, 317.50] 301.00 [252.00, 384.00] 224.00 [160.00, 304.00] 0.002
## protime (median [IQR]) 10.30 [9.90, 10.70] 10.10 [10.00, 10.65] 11.05 [10.60, 11.80] <0.001
## trt = 2 (%) 78 (49.7) 9 (56.2) 52 (50.5) 0.340
## ascites = 1 (%) 0 (0.0) 0 (0.0) 21 (20.4) <0.001
## spiders = 1 (%) 31 (19.7) 5 (31.2) 50 (48.5) <0.001
## edema (%) <0.001
## 0 200 (93.0) 19 (86.4) 99 (72.3)
## 0.5 14 ( 6.5) 3 (13.6) 22 (16.1)
## 1 1 ( 0.5) 0 ( 0.0) 16 (11.7)
## stage (%) <0.001
## 1 17 ( 8.0) 0 ( 0.0) 1 ( 0.8)
## 2 61 (28.6) 5 (22.7) 18 (13.5)
## 3 92 (43.2) 8 (36.4) 39 (29.3)
## 4 43 (20.2) 9 (40.9) 75 (56.4)
## Stratified by status:sex
## test
## n
## time (median [IQR]) nonnorm
## age (median [IQR]) nonnorm
## bili (median [IQR]) nonnorm
## chol (median [IQR]) nonnorm
## albumin (median [IQR]) nonnorm
## copper (median [IQR]) nonnorm
## alk.phos (median [IQR]) nonnorm
## ast (median [IQR]) nonnorm
## trig (median [IQR]) nonnorm
## platelet (median [IQR]) nonnorm
## protime (median [IQR]) nonnorm
## trt = 2 (%)
## ascites = 1 (%)
## spiders = 1 (%)
## edema (%)
## 0
## 0.5
## 1
## stage (%)
## 1
## 2
## 3
## 4
## quote
print(tableOne, quote = TRUE)
## "Stratified by status:sex"
## "" "0:m" "1:m" "2:m" "0:f"
## "n" "17" "3" "24" "215"
## "time (mean (sd))" "2462.18 (1217.33)" "1147.67 (785.78)" "1584.88 (1120.46)" "2322.95 (977.61)"
## "age (mean (sd))" " 55.69 (10.65)" " 42.16 (11.97)" " 57.42 (10.34)" " 49.02 (10.28)"
## "bili (mean (sd))" " 2.63 (2.62)" " 2.37 (1.15)" " 3.10 (2.25)" " 1.49 (1.83)"
## "chol (mean (sd))" " 367.91 (234.99)" " 415.33 (201.32)" " 352.05 (149.18)" " 323.31 (159.87)"
## "albumin (mean (sd))" " 3.47 (0.43)" " 3.75 (0.28)" " 3.55 (0.50)" " 3.60 (0.35)"
## "copper (mean (sd))" " 128.82 (113.07)" " 215.33 (198.03)" " 158.68 (78.57)" " 62.22 (48.66)"
## "alk.phos (mean (sd))" "2482.25 (3052.94)" " 921.00 (196.50)" "2189.02 (2243.18)" "1514.78 (1481.83)"
## "ast (mean (sd))" " 112.28 (50.94)" " 110.73 (30.99)" " 128.38 (47.39)" " 106.94 (53.06)"
## "trig (mean (sd))" " 131.82 (33.73)" " 165.00 (64.58)" " 129.76 (58.95)" " 110.21 (48.98)"
## "platelet (mean (sd))" " 213.44 (72.17)" " 289.00 (65.18)" " 235.71 (93.92)" " 264.78 (88.83)"
## "protime (mean (sd))" " 10.94 (0.80)" " 10.73 (0.51)" " 10.97 (1.07)" " 10.42 (0.92)"
## "trt = 2 (%)" " 7 (63.6) " " 0 (0.0) " " 8 (36.4) " " 78 (49.7) "
## "ascites = 1 (%)" " 1 (9.1) " " 0 (0.0) " " 2 (9.1) " " 0 (0.0) "
## "spiders = 1 (%)" " 2 (18.2) " " 0 (0.0) " " 2 (9.1) " " 31 (19.7) "
## "edema (%)" " " " " " " " "
## " 0" " 16 (94.1) " " 3 (100.0) " " 17 (70.8) " " 200 (93.0) "
## " 0.5" " 1 ( 5.9) " " 0 ( 0.0) " " 4 (16.7) " " 14 ( 6.5) "
## " 1" " 0 ( 0.0) " " 0 ( 0.0) " " 3 (12.5) " " 1 ( 0.5) "
## "stage (%)" " " " " " " " "
## " 1" " 2 (11.8) " " 0 ( 0.0) " " 1 ( 4.2) " " 17 ( 8.0) "
## " 2" " 3 (17.6) " " 0 ( 0.0) " " 5 (20.8) " " 61 (28.6) "
## " 3" " 5 (29.4) " " 2 (66.7) " " 9 (37.5) " " 92 (43.2) "
## " 4" " 7 (41.2) " " 1 (33.3) " " 9 (37.5) " " 43 (20.2) "
## "Stratified by status:sex"
## "" "1:f" "2:f" "p" "test"
## "n" "22" "137" "" ""
## "time (mean (sd))" "1600.55 (750.70)" "1340.50 (1036.28)" "<0.001" ""
## "age (mean (sd))" " 41.63 (5.67)" " 53.31 (9.63)" "<0.001" ""
## "bili (mean (sd))" " 3.72 (3.80)" " 5.97 (6.16)" "<0.001" ""
## "chol (mean (sd))" " 444.33 (361.62)" " 430.14 (294.85)" " 0.016" ""
## "albumin (mean (sd))" " 3.45 (0.47)" " 3.33 (0.46)" "<0.001" ""
## "copper (mean (sd))" " 106.88 (69.34)" " 130.39 (101.92)" "<0.001" ""
## "alk.phos (mean (sd))" "1650.38 (864.55)" "2680.93 (2762.92)" " 0.001" ""
## "ast (mean (sd))" " 133.75 (37.69)" " 144.82 (60.27)" "<0.001" ""
## "trig (mean (sd))" " 127.73 (72.11)" " 142.93 (83.28)" " 0.007" ""
## "platelet (mean (sd))" " 312.41 (107.56)" " 243.73 (110.52)" " 0.009" ""
## "protime (mean (sd))" " 10.31 (0.53)" " 11.23 (1.04)" "<0.001" ""
## "trt = 2 (%)" " 9 (56.2) " " 52 (50.5) " " 0.340" ""
## "ascites = 1 (%)" " 0 (0.0) " " 21 (20.4) " "<0.001" ""
## "spiders = 1 (%)" " 5 (31.2) " " 50 (48.5) " "<0.001" ""
## "edema (%)" " " " " "<0.001" ""
## " 0" " 19 (86.4) " " 99 (72.3) " "" ""
## " 0.5" " 3 (13.6) " " 22 (16.1) " "" ""
## " 1" " 0 ( 0.0) " " 16 (11.7) " "" ""
## "stage (%)" " " " " "<0.001" ""
## " 1" " 0 ( 0.0) " " 1 ( 0.8) " "" ""
## " 2" " 5 (22.7) " " 18 (13.5) " "" ""
## " 3" " 8 (36.4) " " 39 (29.3) " "" ""
## " 4" " 9 (40.9) " " 75 (56.4) " "" ""
## Partially nonnormal
print(tableOne, nonnormal = nonNormalVars)
## Stratified by status:sex
## 0:m 1:m 2:m
## n 17 3 24
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34)
## bili (median [IQR]) 1.70 [0.90, 3.00] 2.40 [1.80, 2.95] 2.30 [1.58, 3.62]
## chol (median [IQR]) 252.00 [242.50, 403.00] 325.00 [300.00, 485.50] 331.00 [247.00, 426.00]
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50)
## copper (median [IQR]) 84.00 [57.00, 168.00] 102.00 [101.00, 273.00] 165.00 [96.75, 215.25]
## alk.phos (median [IQR]) 1098.00 [913.00, 2311.00] 855.00 [810.50, 998.50] 1452.00 [973.75, 2387.00]
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39)
## trig (median [IQR]) 128.00 [112.50, 153.50] 194.00 [142.50, 202.00] 122.00 [91.00, 155.00]
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92)
## protime (median [IQR]) 10.90 [10.60, 11.20] 10.60 [10.45, 10.95] 10.95 [10.17, 11.33]
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8)
## 3 5 (29.4) 2 (66.7) 9 (37.5)
## 4 7 (41.2) 1 (33.3) 9 (37.5)
## Stratified by status:sex
## 0:f 1:f 2:f p
## n 215 22 137
## time (mean (sd)) 2322.95 (977.61) 1600.55 (750.70) 1340.50 (1036.28) <0.001
## age (mean (sd)) 49.02 (10.28) 41.63 (5.67) 53.31 (9.63) <0.001
## bili (median [IQR]) 0.90 [0.60, 1.45] 3.15 [1.38, 4.18] 3.40 [1.40, 7.30] <0.001
## chol (median [IQR]) 294.00 [246.00, 360.00] 348.00 [313.00, 441.00] 344.00 [260.00, 468.00] 0.040
## albumin (mean (sd)) 3.60 (0.35) 3.45 (0.47) 3.33 (0.46) <0.001
## copper (median [IQR]) 51.50 [33.00, 75.25] 98.00 [58.50, 126.25] 102.50 [58.00, 172.75] <0.001
## alk.phos (median [IQR]) 1110.00 [794.00, 1637.00] 1407.00 [1131.75, 1932.00] 1787.00 [1057.00, 2562.00] <0.001
## ast (mean (sd)) 106.94 (53.06) 133.75 (37.69) 144.82 (60.27) <0.001
## trig (median [IQR]) 101.00 [76.75, 133.00] 118.00 [81.00, 142.00] 121.00 [91.75, 171.25] 0.008
## platelet (mean (sd)) 264.78 (88.83) 312.41 (107.56) 243.73 (110.52) 0.009
## protime (median [IQR]) 10.30 [9.90, 10.70] 10.10 [10.00, 10.65] 11.05 [10.60, 11.80] <0.001
## trt = 2 (%) 78 (49.7) 9 (56.2) 52 (50.5) 0.340
## ascites = 1 (%) 0 (0.0) 0 (0.0) 21 (20.4) <0.001
## spiders = 1 (%) 31 (19.7) 5 (31.2) 50 (48.5) <0.001
## edema (%) <0.001
## 0 200 (93.0) 19 (86.4) 99 (72.3)
## 0.5 14 ( 6.5) 3 (13.6) 22 (16.1)
## 1 1 ( 0.5) 0 ( 0.0) 16 (11.7)
## stage (%) <0.001
## 1 17 ( 8.0) 0 ( 0.0) 1 ( 0.8)
## 2 61 (28.6) 5 (22.7) 18 (13.5)
## 3 92 (43.2) 8 (36.4) 39 (29.3)
## 4 43 (20.2) 9 (40.9) 75 (56.4)
## Stratified by status:sex
## test
## n
## time (mean (sd))
## age (mean (sd))
## bili (median [IQR]) nonnorm
## chol (median [IQR]) nonnorm
## albumin (mean (sd))
## copper (median [IQR]) nonnorm
## alk.phos (median [IQR]) nonnorm
## ast (mean (sd))
## trig (median [IQR]) nonnorm
## platelet (mean (sd))
## protime (median [IQR]) nonnorm
## trt = 2 (%)
## ascites = 1 (%)
## spiders = 1 (%)
## edema (%)
## 0
## 0.5
## 1
## stage (%)
## 1
## 2
## 3
## 4
## Partially nonnormal median [range]
print(tableOne, nonnormal = nonNormalVars, minMax = TRUE)
## Stratified by status:sex
## 0:m 1:m 2:m
## n 17 3 24
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34)
## bili (median [range]) 1.70 [0.60, 8.60] 2.40 [1.20, 3.50] 2.30 [0.80, 9.50]
## chol (median [range]) 252.00 [216.00, 1000.00] 325.00 [275.00, 646.00] 331.00 [151.00, 660.00]
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50)
## copper (median [range]) 84.00 [25.00, 380.00] 102.00 [100.00, 444.00] 165.00 [13.00, 290.00]
## alk.phos (median [range]) 1098.00 [601.00, 10396.80] 855.00 [766.00, 1142.00] 1452.00 [516.00, 10165.00]
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39)
## trig (median [range]) 128.00 [83.00, 188.00] 194.00 [91.00, 210.00] 122.00 [49.00, 242.00]
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92)
## protime (median [range]) 10.90 [9.80, 13.00] 10.60 [10.30, 11.30] 10.95 [9.70, 14.10]
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8)
## 3 5 (29.4) 2 (66.7) 9 (37.5)
## 4 7 (41.2) 1 (33.3) 9 (37.5)
## Stratified by status:sex
## 0:f 1:f 2:f p
## n 215 22 137
## time (mean (sd)) 2322.95 (977.61) 1600.55 (750.70) 1340.50 (1036.28) <0.001
## age (mean (sd)) 49.02 (10.28) 41.63 (5.67) 53.31 (9.63) <0.001
## bili (median [range]) 0.90 [0.30, 13.60] 3.15 [0.50, 18.00] 3.40 [0.30, 28.00] <0.001
## chol (median [range]) 294.00 [120.00, 1480.00] 348.00 [201.00, 1712.00] 344.00 [127.00, 1775.00] 0.040
## albumin (mean (sd)) 3.60 (0.35) 3.45 (0.47) 3.33 (0.46) <0.001
## copper (median [range]) 51.50 [4.00, 412.00] 98.00 [32.00, 308.00] 102.50 [14.00, 588.00] <0.001
## alk.phos (median [range]) 1110.00 [289.00, 11046.60] 1407.00 [637.00, 3681.00] 1787.00 [559.00, 13862.40] <0.001
## ast (mean (sd)) 106.94 (53.06) 133.75 (37.69) 144.82 (60.27) <0.001
## trig (median [range]) 101.00 [44.00, 382.00] 118.00 [33.00, 322.00] 121.00 [50.00, 598.00] 0.008
## platelet (mean (sd)) 264.78 (88.83) 312.41 (107.56) 243.73 (110.52) 0.009
## protime (median [range]) 10.30 [9.00, 18.00] 10.10 [9.60, 11.40] 11.05 [9.00, 15.20] <0.001
## trt = 2 (%) 78 (49.7) 9 (56.2) 52 (50.5) 0.340
## ascites = 1 (%) 0 (0.0) 0 (0.0) 21 (20.4) <0.001
## spiders = 1 (%) 31 (19.7) 5 (31.2) 50 (48.5) <0.001
## edema (%) <0.001
## 0 200 (93.0) 19 (86.4) 99 (72.3)
## 0.5 14 ( 6.5) 3 (13.6) 22 (16.1)
## 1 1 ( 0.5) 0 ( 0.0) 16 (11.7)
## stage (%) <0.001
## 1 17 ( 8.0) 0 ( 0.0) 1 ( 0.8)
## 2 61 (28.6) 5 (22.7) 18 (13.5)
## 3 92 (43.2) 8 (36.4) 39 (29.3)
## 4 43 (20.2) 9 (40.9) 75 (56.4)
## Stratified by status:sex
## test
## n
## time (mean (sd))
## age (mean (sd))
## bili (median [range]) nonnorm
## chol (median [range]) nonnorm
## albumin (mean (sd))
## copper (median [range]) nonnorm
## alk.phos (median [range]) nonnorm
## ast (mean (sd))
## trig (median [range]) nonnorm
## platelet (mean (sd))
## protime (median [range]) nonnorm
## trt = 2 (%)
## ascites = 1 (%)
## spiders = 1 (%)
## edema (%)
## 0
## 0.5
## 1
## stage (%)
## 1
## 2
## 3
## 4
## showAllLevels
print(tableOne, showAllLevels = TRUE)
## Stratified by status:sex
## level 0:m 1:m 2:m 0:f
## n 17 3 24 215
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92)
## trt (%) 1 4 (36.4) 3 (100.0) 14 (63.6) 79 (50.3)
## 2 7 (63.6) 0 ( 0.0) 8 (36.4) 78 (49.7)
## ascites (%) 0 10 (90.9) 3 (100.0) 20 (90.9) 157 (100.0)
## 1 1 ( 9.1) 0 ( 0.0) 2 ( 9.1) 0 ( 0.0)
## spiders (%) 0 9 (81.8) 3 (100.0) 20 (90.9) 126 (80.3)
## 1 2 (18.2) 0 ( 0.0) 2 ( 9.1) 31 (19.7)
## edema (%) 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5)
## stage (%) 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2)
## Stratified by status:sex
## 1:f 2:f p test
## n 22 137
## time (mean (sd)) 1600.55 (750.70) 1340.50 (1036.28) <0.001
## age (mean (sd)) 41.63 (5.67) 53.31 (9.63) <0.001
## bili (mean (sd)) 3.72 (3.80) 5.97 (6.16) <0.001
## chol (mean (sd)) 444.33 (361.62) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.45 (0.47) 3.33 (0.46) <0.001
## copper (mean (sd)) 106.88 (69.34) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 1650.38 (864.55) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 133.75 (37.69) 144.82 (60.27) <0.001
## trig (mean (sd)) 127.73 (72.11) 142.93 (83.28) 0.007
## platelet (mean (sd)) 312.41 (107.56) 243.73 (110.52) 0.009
## protime (mean (sd)) 10.31 (0.53) 11.23 (1.04) <0.001
## trt (%) 7 (43.8) 51 (49.5) 0.340
## 9 (56.2) 52 (50.5)
## ascites (%) 16 (100.0) 82 (79.6) <0.001
## 0 ( 0.0) 21 (20.4)
## spiders (%) 11 (68.8) 53 (51.5) <0.001
## 5 (31.2) 50 (48.5)
## edema (%) 19 (86.4) 99 (72.3) <0.001
## 3 (13.6) 22 (16.1)
## 0 ( 0.0) 16 (11.7)
## stage (%) 0 ( 0.0) 1 ( 0.8) <0.001
## 5 (22.7) 18 (13.5)
## 8 (36.4) 39 (29.3)
## 9 (40.9) 75 (56.4)
## test
print(tableOne, test = FALSE)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f
## n 137
## time (mean (sd)) 1340.50 (1036.28)
## age (mean (sd)) 53.31 (9.63)
## bili (mean (sd)) 5.97 (6.16)
## chol (mean (sd)) 430.14 (294.85)
## albumin (mean (sd)) 3.33 (0.46)
## copper (mean (sd)) 130.39 (101.92)
## alk.phos (mean (sd)) 2680.93 (2762.92)
## ast (mean (sd)) 144.82 (60.27)
## trig (mean (sd)) 142.93 (83.28)
## platelet (mean (sd)) 243.73 (110.52)
## protime (mean (sd)) 11.23 (1.04)
## trt = 2 (%) 52 (50.5)
## ascites = 1 (%) 21 (20.4)
## spiders = 1 (%) 50 (48.5)
## edema (%)
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%)
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## pDigits
print(tableOne, pDigits = 5)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## No explanation
print(tableOne, explain = FALSE)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time 1340.50 (1036.28) <0.001
## age 53.31 (9.63) <0.001
## bili 5.97 (6.16) <0.001
## chol 430.14 (294.85) 0.016
## albumin 3.33 (0.46) <0.001
## copper 130.39 (101.92) <0.001
## alk.phos 2680.93 (2762.92) 0.001
## ast 144.82 (60.27) <0.001
## trig 142.93 (83.28) 0.007
## platelet 243.73 (110.52) 0.009
## protime 11.23 (1.04) <0.001
## trt = 2 52 (50.5) 0.340
## ascites = 1 21 (20.4) <0.001
## spiders = 1 50 (48.5) <0.001
## edema <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## No spaces
print(tableOne, noSpaces = TRUE, quote = TRUE)
## "Stratified by status:sex"
## "" "0:m" "1:m" "2:m" "0:f"
## "n" "17" "3" "24" "215"
## "time (mean (sd))" "2462.18 (1217.33)" "1147.67 (785.78)" "1584.88 (1120.46)" "2322.95 (977.61)"
## "age (mean (sd))" "55.69 (10.65)" "42.16 (11.97)" "57.42 (10.34)" "49.02 (10.28)"
## "bili (mean (sd))" "2.63 (2.62)" "2.37 (1.15)" "3.10 (2.25)" "1.49 (1.83)"
## "chol (mean (sd))" "367.91 (234.99)" "415.33 (201.32)" "352.05 (149.18)" "323.31 (159.87)"
## "albumin (mean (sd))" "3.47 (0.43)" "3.75 (0.28)" "3.55 (0.50)" "3.60 (0.35)"
## "copper (mean (sd))" "128.82 (113.07)" "215.33 (198.03)" "158.68 (78.57)" "62.22 (48.66)"
## "alk.phos (mean (sd))" "2482.25 (3052.94)" "921.00 (196.50)" "2189.02 (2243.18)" "1514.78 (1481.83)"
## "ast (mean (sd))" "112.28 (50.94)" "110.73 (30.99)" "128.38 (47.39)" "106.94 (53.06)"
## "trig (mean (sd))" "131.82 (33.73)" "165.00 (64.58)" "129.76 (58.95)" "110.21 (48.98)"
## "platelet (mean (sd))" "213.44 (72.17)" "289.00 (65.18)" "235.71 (93.92)" "264.78 (88.83)"
## "protime (mean (sd))" "10.94 (0.80)" "10.73 (0.51)" "10.97 (1.07)" "10.42 (0.92)"
## "trt = 2 (%)" "7 (63.6)" "0 (0.0)" "8 (36.4)" "78 (49.7)"
## "ascites = 1 (%)" "1 (9.1)" "0 (0.0)" "2 (9.1)" "0 (0.0)"
## "spiders = 1 (%)" "2 (18.2)" "0 (0.0)" "2 (9.1)" "31 (19.7)"
## "edema (%)" "" "" "" ""
## " 0" "16 (94.1)" "3 (100.0)" "17 (70.8)" "200 (93.0)"
## " 0.5" "1 (5.9)" "0 (0.0)" "4 (16.7)" "14 (6.5)"
## " 1" "0 (0.0)" "0 (0.0)" "3 (12.5)" "1 (0.5)"
## "stage (%)" "" "" "" ""
## " 1" "2 (11.8)" "0 (0.0)" "1 (4.2)" "17 (8.0)"
## " 2" "3 (17.6)" "0 (0.0)" "5 (20.8)" "61 (28.6)"
## " 3" "5 (29.4)" "2 (66.7)" "9 (37.5)" "92 (43.2)"
## " 4" "7 (41.2)" "1 (33.3)" "9 (37.5)" "43 (20.2)"
## "Stratified by status:sex"
## "" "1:f" "2:f" "p" "test"
## "n" "22" "137" "" ""
## "time (mean (sd))" "1600.55 (750.70)" "1340.50 (1036.28)" "<0.001" ""
## "age (mean (sd))" "41.63 (5.67)" "53.31 (9.63)" "<0.001" ""
## "bili (mean (sd))" "3.72 (3.80)" "5.97 (6.16)" "<0.001" ""
## "chol (mean (sd))" "444.33 (361.62)" "430.14 (294.85)" "0.016" ""
## "albumin (mean (sd))" "3.45 (0.47)" "3.33 (0.46)" "<0.001" ""
## "copper (mean (sd))" "106.88 (69.34)" "130.39 (101.92)" "<0.001" ""
## "alk.phos (mean (sd))" "1650.38 (864.55)" "2680.93 (2762.92)" "0.001" ""
## "ast (mean (sd))" "133.75 (37.69)" "144.82 (60.27)" "<0.001" ""
## "trig (mean (sd))" "127.73 (72.11)" "142.93 (83.28)" "0.007" ""
## "platelet (mean (sd))" "312.41 (107.56)" "243.73 (110.52)" "0.009" ""
## "protime (mean (sd))" "10.31 (0.53)" "11.23 (1.04)" "<0.001" ""
## "trt = 2 (%)" "9 (56.2)" "52 (50.5)" "0.340" ""
## "ascites = 1 (%)" "0 (0.0)" "21 (20.4)" "<0.001" ""
## "spiders = 1 (%)" "5 (31.2)" "50 (48.5)" "<0.001" ""
## "edema (%)" "" "" "<0.001" ""
## " 0" "19 (86.4)" "99 (72.3)" "" ""
## " 0.5" "3 (13.6)" "22 (16.1)" "" ""
## " 1" "0 (0.0)" "16 (11.7)" "" ""
## "stage (%)" "" "" "<0.001" ""
## " 1" "0 (0.0)" "1 (0.8)" "" ""
## " 2" "5 (22.7)" "18 (13.5)" "" ""
## " 3" "8 (36.4)" "39 (29.3)" "" ""
## " 4" "9 (40.9)" "75 (56.4)" "" ""
### Behaviors on correct data format (stratified, 3-variables (1 empty level))
## Three variables
tableOne <- CreateTableOne(vars = vars, strata = strataThreeVars, data = dataFrame)
## print method
tableOne
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## summary method
summary(tableOne)
##
## ### Summary of continuous variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 15 0 0 2412 1422.2 2386 1186 3608 140.0 4459 0.1 -1.3
## age 15 0 0 51 12.1 49 44 61 33.5 70 0.2 -1.0
## bili 15 0 0 2 1.3 2 2 2 0.6 6 1.7 4.4
## chol 15 0 0 360 165.0 317 250 438 168.0 660 0.9 -0.5
## albumin 15 0 0 4 0.4 4 3 4 2.6 4 -1.3 2.4
## copper 15 0 0 166 107.9 158 98 214 13.0 444 1.0 2.1
## alk.phos 15 0 0 2839 3424.6 1056 740 3471 516.0 10397 1.6 1.4
## ast 15 0 0 125 43.6 127 102 141 56.8 206 0.3 -0.3
## trig 15 0 0 132 55.5 118 86 183 55.0 219 0.2 -1.4
## platelet 15 1 7 247 88.7 214 181 329 108.0 394 0.3 -1.2
## protime 15 0 0 11 1.2 11 10 11 9.7 14 1.5 2.0
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 132 0 0.0 2375 1020.6 2361.0 1475.0 3089 198.0 4556 0.17 -0.7
## age 132 0 0.0 48 10.2 48.0 40.7 56 28.9 75 0.27 -0.5
## bili 132 0 0.0 2 2.4 0.9 0.6 1 0.3 22 5.83 45.1
## chol 132 15 11.4 337 158.9 296.0 242.0 390 120.0 1276 2.85 12.2
## albumin 132 0 0.0 4 0.3 3.7 3.4 4 2.8 5 0.07 0.2
## copper 132 1 0.8 66 56.7 52.0 32.0 78 4.0 464 3.40 19.0
## alk.phos 132 0 0.0 1634 1732.6 1177.5 793.2 1690 369.0 12259 4.00 18.8
## ast 132 0 0.0 111 52.1 99.1 73.4 136 28.4 329 1.28 2.1
## trig 132 15 11.4 111 52.3 100.0 74.0 135 44.0 382 1.87 6.0
## platelet 132 0 0.0 287 87.7 278.0 226.5 336 71.0 514 0.27 -0.2
## protime 132 0 0.0 10 0.9 10.3 9.9 11 9.0 17 3.79 25.0
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 5 0 0 1130 1382.6 388 51 2081 41 3090 0.9 -1.63
## age 5 0 0 65 10.5 66 61 71 49 77 -0.7 0.39
## bili 5 0 0 7 7.7 2 1 13 1 18 0.9 -1.80
## chol 5 0 0 253 86.8 206 200 302 175 382 1.0 -0.68
## albumin 5 0 0 3 0.5 3 3 3 2 4 -0.2 0.49
## copper 5 0 0 112 72.7 108 58 140 36 220 0.7 -0.07
## alk.phos 5 0 0 1258 416.4 1516 918 1523 705 1626 -0.7 -2.41
## ast 5 0 0 171 118.8 147 87 239 43 338 0.6 -0.98
## trig 5 1 20 138 67.3 128 102 164 70 229 0.9 1.02
## platelet 5 0 0 193 116.5 145 126 302 62 329 0.3 -2.55
## protime 5 0 0 12 1.2 12 12 13 10 13 -0.8 -0.29
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 18 0 0 1703 1198.6 1300 822 2088 533.0 4191 1.1 0.05
## age 18 0 0 59 9.2 58 51 67 44.5 75 0.2 -1.19
## bili 18 0 0 3 2.6 2 1 5 0.6 9 0.8 -0.76
## chol 18 0 0 383 194.3 361 251 427 178.0 1000 2.0 5.36
## albumin 18 0 0 4 0.3 4 3 4 3.0 4 -0.6 -0.90
## copper 18 0 0 142 82.9 114 82 197 25.0 290 0.5 -1.05
## alk.phos 18 0 0 1823 1260.7 1222 1029 2387 681.0 5719 1.9 4.47
## ast 18 0 0 124 49.0 119 84 169 57.4 222 0.5 -0.87
## trig 18 0 0 138 49.3 127 95 154 83.0 242 1.0 0.09
## platelet 18 0 0 241 86.3 250 190 299 70.0 360 -0.5 -0.74
## protime 18 0 0 11 0.6 11 10 11 9.8 12 -0.2 -0.68
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 123 0 0 1838 1007.4 1741 1084 2391 71.0 4523 0.71 0.2
## age 123 0 0 49 9.7 49 41 56 26.3 69 -0.06 -0.7
## bili 123 0 0 4 4.8 2 1 5 0.4 28 2.64 8.2
## chol 123 10 8 411 298.7 322 260 408 149.0 1775 3.09 9.8
## albumin 123 0 0 3 0.4 3 3 4 2.0 4 -0.62 1.6
## copper 123 0 0 104 85.0 76 50 126 11.0 588 2.47 9.2
## alk.phos 123 0 0 2260 2445.2 1428 958 2280 289.0 13862 2.68 7.4
## ast 123 0 0 130 60.2 121 90 159 26.4 457 1.76 6.5
## trig 123 11 9 127 60.1 108 90 150 33.0 322 1.40 2.0
## platelet 123 3 2 253 98.0 239 184 306 79.0 563 0.71 0.7
## protime 123 0 0 11 1.0 11 10 12 9.2 13 0.65 -0.3
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0 1058 799.0 1217 704 1491 191.0 1765 -0.86 NaN
## age 3 0 0 68 11.1 68 62 73 56.2 78 -0.16 NaN
## bili 3 0 0 3 3.5 1 1 4 0.8 7 1.69 NaN
## chol 3 1 33 197 65.1 197 174 220 151.0 243 NaN NaN
## albumin 3 0 0 3 0.5 3 3 3 2.3 3 -1.71 NaN
## copper 3 0 0 165 186.5 73 58 226 43.0 380 1.68 NaN
## alk.phos 3 0 0 941 195.4 983 856 1048 728.0 1112 -0.92 NaN
## ast 3 0 0 92 58.7 71 59 115 46.5 158 1.40 NaN
## trig 3 1 33 102 74.2 102 75 128 49.0 154 NaN NaN
## platelet 3 0 0 155 58.0 156 126 184 97.0 213 -0.05 NaN
## protime 3 0 0 12 1.2 11 11 12 11.0 13 1.68 NaN
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 16 0 0 668 805.6 341 207 916 77 3222 2.39 6.6
## age 16 0 0 55 8.9 55 48 61 39 71 0.05 -0.5
## bili 16 0 0 11 7.8 11 4 17 1 24 0.18 -1.4
## chol 16 2 12 364 247.7 278 222 382 175 1092 2.30 5.7
## albumin 16 0 0 3 0.5 3 3 3 2 4 0.26 -0.6
## copper 16 1 6 184 125.7 182 130 215 16 558 1.80 5.5
## alk.phos 16 0 0 2522 2043.4 1776 1070 3708 559 6931 1.16 0.1
## ast 16 0 0 140 43.2 136 105 177 74 227 0.29 -0.6
## trig 16 2 12 194 145.2 162 118 188 68 598 2.18 4.5
## platelet 16 0 0 197 94.7 178 138 224 80 401 1.19 1.0
## protime 16 0 0 12 1.1 12 11 12 11 15 2.20 6.1
##
## p-values
## pNormal pNonNormal
## time 2.212e-09 3.079e-09
## age 4.535e-07 2.860e-05
## bili 3.761e-15 1.059e-13
## chol 2.101e-01 7.850e-02
## albumin 5.323e-15 8.993e-11
## copper 4.615e-10 4.233e-10
## alk.phos 1.087e-01 7.650e-02
## ast 3.181e-02 2.190e-02
## trig 6.931e-04 8.213e-03
## platelet 2.232e-04 1.645e-04
## protime 1.554e-08 2.096e-08
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 15 0 0.0 1 9 60.0 60.0
## 2 6 40.0 100.0
##
## ascites 15 0 0.0 0 15 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 15 0 0.0 0 14 93.3 93.3
## 1 1 6.7 100.0
##
## edema 15 0 0.0 0 13 86.7 86.7
## 0.5 1 6.7 93.3
## 1 1 6.7 100.0
##
## stage 15 0 0.0 1 3 20.0 20.0
## 2 3 20.0 40.0
## 3 7 46.7 86.7
## 4 2 13.3 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 132 0 0.0 1 73 55.3 55.3
## 2 59 44.7 100.0
##
## ascites 132 0 0.0 0 132 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 132 0 0.0 0 111 84.1 84.1
## 1 21 15.9 100.0
##
## edema 132 0 0.0 0 123 93.2 93.2
## 0.5 8 6.1 99.2
## 1 1 0.8 100.0
##
## stage 132 0 0.0 1 13 9.8 9.8
## 2 45 34.1 43.9
## 3 59 44.7 88.6
## 4 15 11.4 100.0
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 5 0 0.0 1 3 60.0 60.0
## 2 2 40.0 100.0
##
## ascites 5 0 0.0 0 0 0.0 0.0
## 1 5 100.0 100.0
##
## spiders 5 0 0.0 0 4 80.0 80.0
## 1 1 20.0 100.0
##
## edema 5 0 0.0 0 2 40.0 40.0
## 0.5 0 0.0 40.0
## 1 3 60.0 100.0
##
## stage 5 0 0.0 1 0 0.0 0.0
## 2 0 0.0 0.0
## 3 1 20.0 20.0
## 4 4 80.0 100.0
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 18 0 0.0 1 11 61.1 61.1
## 2 7 38.9 100.0
##
## ascites 18 0 0.0 0 18 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 18 0 0.0 0 16 88.9 88.9
## 1 2 11.1 100.0
##
## edema 18 0 0.0 0 15 83.3 83.3
## 0.5 3 16.7 100.0
## 1 0 0.0 100.0
##
## stage 18 0 0.0 1 0 0.0 0.0
## 2 3 16.7 16.7
## 3 5 27.8 44.4
## 4 10 55.6 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 123 0 0.0 1 51 41.5 41.5
## 2 72 58.5 100.0
##
## ascites 123 0 0.0 0 123 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 123 0 0.0 0 70 56.9 56.9
## 1 53 43.1 100.0
##
## edema 123 0 0.0 0 106 86.2 86.2
## 0.5 13 10.6 96.7
## 1 4 3.3 100.0
##
## stage 123 0 0.0 1 0 0.0 0.0
## 2 14 11.4 11.4
## 3 48 39.0 50.4
## 4 61 49.6 100.0
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.0 1 1 33.3 33.3
## 2 2 66.7 100.0
##
## ascites 3 0 0.0 0 0 0.0 0.0
## 1 3 100.0 100.0
##
## spiders 3 0 0.0 0 2 66.7 66.7
## 1 1 33.3 100.0
##
## edema 3 0 0.0 0 1 33.3 33.3
## 0.5 0 0.0 33.3
## 1 2 66.7 100.0
##
## stage 3 0 0.0 1 0 0.0 0.0
## 2 0 0.0 0.0
## 3 0 0.0 0.0
## 4 3 100.0 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 16 0 0.0 1 10 62.5 62.5
## 2 6 37.5 100.0
##
## ascites 16 0 0.0 0 0 0.0 0.0
## 1 16 100.0 100.0
##
## spiders 16 0 0.0 0 5 31.2 31.2
## 1 11 68.8 100.0
##
## edema 16 0 0.0 0 3 18.8 18.8
## 0.5 4 25.0 43.8
## 1 9 56.2 100.0
##
## stage 16 0 0.0 1 0 0.0 0.0
## 2 2 12.5 12.5
## 3 0 0.0 12.5
## 4 14 87.5 100.0
##
##
## p-values
## pApprox pExact
## trt NaN 2.142e-01
## ascites NaN 2.124e-36
## spiders NaN NA
## edema NaN NA
## stage NaN NA
## Five digits
summary(tableOne, digits = 5)
##
## ### Summary of continuous variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 15 0 0.0000 2412.3333 1422.1935 2386.000 1186.000 3607.500 140.000 4459.000 0.11514 -1.28856
## age 15 0 0.0000 51.0658 12.1127 49.136 44.234 60.798 33.476 70.073 0.18822 -1.02481
## bili 15 0 0.0000 2.2400 1.3092 1.900 1.550 2.450 0.600 6.000 1.70918 4.35377
## chol 15 0 0.0000 360.3333 164.9847 317.000 250.500 438.000 168.000 660.000 0.86891 -0.45501
## albumin 15 0 0.0000 3.7227 0.4384 3.830 3.470 3.965 2.560 4.300 -1.26772 2.40204
## copper 15 0 0.0000 166.2667 107.9421 158.000 98.000 213.500 13.000 444.000 1.02399 2.05082
## alk.phos 15 0 0.0000 2839.4133 3424.6273 1056.000 740.000 3470.700 516.000 10396.800 1.61265 1.35674
## ast 15 0 0.0000 125.0153 43.6168 127.000 102.300 141.050 56.760 206.400 0.26480 -0.32296
## trig 15 0 0.0000 132.2000 55.5482 118.000 85.500 183.000 55.000 219.000 0.19362 -1.41698
## platelet 15 1 6.6667 246.5714 88.7041 213.500 180.750 329.250 108.000 394.000 0.25147 -1.16574
## protime 15 0 0.0000 11.0667 1.1938 10.600 10.250 11.350 9.700 14.100 1.47431 1.95643
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 132 0 0.00000 2375.1894 1020.61775 2361.000 1475.000 3089.000 198.000 4556.000 0.167853 -0.72608
## age 132 0 0.00000 48.4083 10.22279 47.981 40.676 56.098 28.884 75.012 0.271431 -0.54517
## bili 132 0 0.00000 1.6121 2.39898 0.900 0.600 1.425 0.300 22.500 5.826786 45.13848
## chol 132 15 11.36364 336.9915 158.86242 296.000 242.000 390.000 120.000 1276.000 2.852877 12.22718
## albumin 132 0 0.00000 3.6704 0.33816 3.660 3.440 3.875 2.750 4.640 0.074731 0.20094
## copper 132 1 0.75758 65.5573 56.66177 52.000 32.000 78.500 4.000 464.000 3.395070 18.96074
## alk.phos 132 0 0.00000 1634.4515 1732.64762 1177.500 793.250 1689.750 369.000 12258.800 3.998408 18.78644
## ast 132 0 0.00000 111.3505 52.09675 99.100 73.360 136.250 28.380 328.600 1.277914 2.09790
## trig 132 15 11.36364 110.7009 52.29018 100.000 74.000 135.000 44.000 382.000 1.874578 5.96483
## platelet 132 0 0.00000 287.3636 87.73723 278.000 226.500 336.500 71.000 514.000 0.266767 -0.16977
## protime 132 0 0.00000 10.4159 0.88627 10.300 9.900 10.700 9.000 17.100 3.790505 24.98418
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 5 0 0 1130.200 1382.63578 388.000 51.000 2081.00 41.000 3090.000 0.85580 -1.625552
## age 5 0 0 64.567 10.52400 65.884 60.706 70.56 48.977 76.709 -0.65743 0.388535
## bili 5 0 0 7.140 7.65134 2.500 1.400 12.60 1.300 17.900 0.85610 -1.797767
## chol 5 0 0 253.000 86.81014 206.000 200.000 302.00 175.000 382.000 0.97898 -0.682133
## albumin 5 0 0 2.854 0.53687 2.750 2.740 3.13 2.100 3.550 -0.19680 0.485519
## copper 5 0 0 112.400 72.72414 108.000 58.000 140.00 36.000 220.000 0.71474 -0.069888
## alk.phos 5 0 0 1257.600 416.41962 1516.000 918.000 1523.00 705.000 1626.000 -0.70377 -2.413395
## ast 5 0 0 170.830 118.75143 147.250 86.800 238.70 43.400 338.000 0.57441 -0.984893
## trig 5 1 20 138.500 67.34241 127.500 101.500 164.50 70.000 229.000 0.87597 1.020728
## platelet 5 0 0 192.800 116.54484 145.000 126.000 302.00 62.000 329.000 0.31155 -2.551503
## protime 5 0 0 12.020 1.16490 12.200 11.500 12.90 10.300 13.200 -0.76406 -0.285444
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 18 0 0 1702.7778 1198.55185 1299.500 821.750 2088.5000 533.00 4191.000 1.14049 0.052903
## age 18 0 0 58.5952 9.18409 58.261 51.305 66.6057 44.52 74.524 0.21632 -1.194823
## bili 18 0 0 3.3667 2.60903 2.300 1.250 5.2000 0.60 8.600 0.77784 -0.760092
## chol 18 0 0 382.6111 194.31180 361.000 251.250 426.7500 178.00 1000.000 1.98438 5.357124
## albumin 18 0 0 3.5906 0.33574 3.710 3.385 3.8525 3.00 4.000 -0.60837 -0.901375
## copper 18 0 0 142.4444 82.93741 114.500 81.750 197.0000 25.00 290.000 0.47972 -1.048835
## alk.phos 18 0 0 1822.8889 1260.71921 1222.500 1028.750 2387.0000 681.00 5719.000 1.92275 4.468294
## ast 18 0 0 124.4906 49.03280 118.575 84.275 168.9500 57.35 221.880 0.48276 -0.872198
## trig 18 0 0 138.0000 49.33916 127.000 95.000 153.7500 83.00 242.000 1.00071 0.085859
## platelet 18 0 0 240.9444 86.30416 250.000 189.500 298.7500 70.00 360.000 -0.47422 -0.738498
## protime 18 0 0 10.8167 0.62521 10.900 10.350 11.2750 9.80 12.000 -0.24516 -0.675953
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 123 0 0.0000 1838.2846 1007.36324 1741.000 1083.500 2391.00 71.000 4523.000 0.708350 0.24326
## age 123 0 0.0000 48.7093 9.71164 49.339 41.380 55.63 26.278 69.347 -0.060499 -0.68836
## bili 123 0 0.0000 3.9715 4.83689 2.100 1.000 5.00 0.400 28.000 2.637238 8.21899
## chol 123 10 8.1301 411.1416 298.66715 322.000 260.000 408.00 149.000 1775.000 3.088032 9.84264
## albumin 123 0 0.0000 3.4339 0.38584 3.480 3.205 3.65 1.960 4.240 -0.624972 1.57126
## copper 123 0 0.0000 104.1057 85.01165 76.000 50.000 125.50 11.000 588.000 2.471784 9.17827
## alk.phos 123 0 0.0000 2259.9041 2445.15851 1428.000 958.000 2280.00 289.000 13862.400 2.680596 7.37586
## ast 123 0 0.0000 130.4689 60.15503 120.900 90.450 158.88 26.350 457.250 1.758908 6.53695
## trig 123 11 8.9431 127.4821 60.13543 108.500 89.500 149.75 33.000 322.000 1.399209 2.03784
## platelet 123 3 2.4390 253.0583 97.99025 239.000 184.500 306.00 79.000 563.000 0.713091 0.71525
## protime 123 0 0.0000 10.7862 0.96235 10.600 10.000 11.50 9.200 13.300 0.648440 -0.33995
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0.000 1057.6667 799.00521 1217.000 704.000 1491.000 191.000 1765.000 -0.861681 NaN
## age 3 0 0.000 67.5227 11.11381 67.907 62.064 73.173 56.222 78.439 -0.155382 NaN
## bili 3 0 0.000 3.0667 3.50190 1.300 1.050 4.200 0.800 7.100 1.692412 NaN
## chol 3 1 33.333 197.0000 65.05382 197.000 174.000 220.000 151.000 243.000 NaN NaN
## albumin 3 0 0.000 2.7933 0.45391 3.030 2.650 3.055 2.270 3.080 -1.708437 NaN
## copper 3 0 0.000 165.3333 186.51095 73.000 58.000 226.500 43.000 380.000 1.681773 NaN
## alk.phos 3 0 0.000 941.0000 195.41494 983.000 855.500 1047.500 728.000 1112.000 -0.922495 NaN
## ast 3 0 0.000 91.8667 58.65325 71.000 58.750 114.550 46.500 158.100 1.398308 NaN
## trig 3 1 33.333 101.5000 74.24621 101.500 75.250 127.750 49.000 154.000 NaN NaN
## platelet 3 0 0.000 155.3333 58.00287 156.000 126.500 184.500 97.000 213.000 -0.051715 NaN
## protime 3 0 0.000 11.8000 1.21655 11.200 11.100 12.200 11.000 13.200 1.679536 NaN
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 16 0 0.00 668.2500 805.63685 341.000 206.750 915.750 77.000 3222.000 2.389812 6.58466
## age 16 0 0.00 54.9174 8.90951 54.917 48.320 61.364 39.198 70.908 0.048155 -0.53000
## bili 16 0 0.00 10.9688 7.80425 10.600 4.000 17.250 1.200 24.500 0.177903 -1.43003
## chol 16 2 12.50 364.5000 247.72216 278.500 222.000 382.250 175.000 1092.000 2.299491 5.69894
## albumin 16 0 0.00 3.0162 0.45119 3.030 2.630 3.320 2.330 3.900 0.261500 -0.61381
## copper 16 1 6.25 184.1333 125.70650 182.000 130.500 215.000 16.000 558.000 1.797284 5.46664
## alk.phos 16 0 0.00 2522.4125 2043.38875 1775.500 1070.250 3708.050 559.000 6931.200 1.158243 0.10099
## ast 16 0 0.00 140.3644 43.21937 135.975 105.463 176.513 73.530 227.040 0.288487 -0.64845
## trig 16 2 12.50 193.7143 145.18870 161.500 118.000 188.000 68.000 598.000 2.184143 4.54837
## platelet 16 0 0.00 197.3750 94.70648 178.000 138.500 224.000 80.000 401.000 1.194066 0.96941
## protime 16 0 0.00 11.7875 1.09354 11.600 11.075 12.025 10.600 15.200 2.200526 6.14523
##
## p-values
## pNormal pNonNormal
## time 2.212e-09 3.079e-09
## age 4.535e-07 2.860e-05
## bili 3.761e-15 1.059e-13
## chol 2.101e-01 7.850e-02
## albumin 5.323e-15 8.993e-11
## copper 4.615e-10 4.233e-10
## alk.phos 1.087e-01 7.650e-02
## ast 3.181e-02 2.190e-02
## trig 6.931e-04 8.213e-03
## platelet 2.232e-04 1.645e-04
## protime 1.554e-08 2.096e-08
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 15 0 0.00000 1 9 60.00000 60.00000
## 2 6 40.00000 100.00000
##
## ascites 15 0 0.00000 0 15 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 15 0 0.00000 0 14 93.33333 93.33333
## 1 1 6.66667 100.00000
##
## edema 15 0 0.00000 0 13 86.66667 86.66667
## 0.5 1 6.66667 93.33333
## 1 1 6.66667 100.00000
##
## stage 15 0 0.00000 1 3 20.00000 20.00000
## 2 3 20.00000 40.00000
## 3 7 46.66667 86.66667
## 4 2 13.33333 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 132 0 0.00000 1 73 55.30303 55.30303
## 2 59 44.69697 100.00000
##
## ascites 132 0 0.00000 0 132 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 132 0 0.00000 0 111 84.09091 84.09091
## 1 21 15.90909 100.00000
##
## edema 132 0 0.00000 0 123 93.18182 93.18182
## 0.5 8 6.06061 99.24242
## 1 1 0.75758 100.00000
##
## stage 132 0 0.00000 1 13 9.84848 9.84848
## 2 45 34.09091 43.93939
## 3 59 44.69697 88.63636
## 4 15 11.36364 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 5 0 0.00000 1 3 60.00000 60.00000
## 2 2 40.00000 100.00000
##
## ascites 5 0 0.00000 0 0 0.00000 0.00000
## 1 5 100.00000 100.00000
##
## spiders 5 0 0.00000 0 4 80.00000 80.00000
## 1 1 20.00000 100.00000
##
## edema 5 0 0.00000 0 2 40.00000 40.00000
## 0.5 0 0.00000 40.00000
## 1 3 60.00000 100.00000
##
## stage 5 0 0.00000 1 0 0.00000 0.00000
## 2 0 0.00000 0.00000
## 3 1 20.00000 20.00000
## 4 4 80.00000 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 18 0 0.00000 1 11 61.11111 61.11111
## 2 7 38.88889 100.00000
##
## ascites 18 0 0.00000 0 18 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 18 0 0.00000 0 16 88.88889 88.88889
## 1 2 11.11111 100.00000
##
## edema 18 0 0.00000 0 15 83.33333 83.33333
## 0.5 3 16.66667 100.00000
## 1 0 0.00000 100.00000
##
## stage 18 0 0.00000 1 0 0.00000 0.00000
## 2 3 16.66667 16.66667
## 3 5 27.77778 44.44444
## 4 10 55.55556 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 123 0 0.00000 1 51 41.46341 41.46341
## 2 72 58.53659 100.00000
##
## ascites 123 0 0.00000 0 123 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 123 0 0.00000 0 70 56.91057 56.91057
## 1 53 43.08943 100.00000
##
## edema 123 0 0.00000 0 106 86.17886 86.17886
## 0.5 13 10.56911 96.74797
## 1 4 3.25203 100.00000
##
## stage 123 0 0.00000 1 0 0.00000 0.00000
## 2 14 11.38211 11.38211
## 3 48 39.02439 50.40650
## 4 61 49.59350 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.00000 1 1 33.33333 33.33333
## 2 2 66.66667 100.00000
##
## ascites 3 0 0.00000 0 0 0.00000 0.00000
## 1 3 100.00000 100.00000
##
## spiders 3 0 0.00000 0 2 66.66667 66.66667
## 1 1 33.33333 100.00000
##
## edema 3 0 0.00000 0 1 33.33333 33.33333
## 0.5 0 0.00000 33.33333
## 1 2 66.66667 100.00000
##
## stage 3 0 0.00000 1 0 0.00000 0.00000
## 2 0 0.00000 0.00000
## 3 0 0.00000 0.00000
## 4 3 100.00000 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 16 0 0.00000 1 10 62.50000 62.50000
## 2 6 37.50000 100.00000
##
## ascites 16 0 0.00000 0 0 0.00000 0.00000
## 1 16 100.00000 100.00000
##
## spiders 16 0 0.00000 0 5 31.25000 31.25000
## 1 11 68.75000 100.00000
##
## edema 16 0 0.00000 0 3 18.75000 18.75000
## 0.5 4 25.00000 43.75000
## 1 9 56.25000 100.00000
##
## stage 16 0 0.00000 1 0 0.00000 0.00000
## 2 2 12.50000 12.50000
## 3 0 0.00000 12.50000
## 4 14 87.50000 100.00000
##
##
## p-values
## pApprox pExact
## trt NaN 2.142e-01
## ascites NaN 2.124e-36
## spiders NaN NA
## edema NaN NA
## stage NaN NA
## print method by default
print(tableOne)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## Five digits
print(tableOne, digits = 5)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## All nonnormal
print(tableOne, nonnormal = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0
## n 15 132 0 5
## time (median [IQR]) 2386.00 [1186.00, 3607.50] 2361.00 [1475.00, 3089.00] - 388.00 [51.00, 2081.00]
## age (median [IQR]) 49.14 [44.23, 60.80] 47.98 [40.68, 56.10] - 65.88 [60.71, 70.56]
## bili (median [IQR]) 1.90 [1.55, 2.45] 0.90 [0.60, 1.42] - 2.50 [1.40, 12.60]
## chol (median [IQR]) 317.00 [250.50, 438.00] 296.00 [242.00, 390.00] - 206.00 [200.00, 302.00]
## albumin (median [IQR]) 3.83 [3.47, 3.96] 3.66 [3.44, 3.88] - 2.75 [2.74, 3.13]
## copper (median [IQR]) 158.00 [98.00, 213.50] 52.00 [32.00, 78.50] - 108.00 [58.00, 140.00]
## alk.phos (median [IQR]) 1056.00 [740.00, 3470.70] 1177.50 [793.25, 1689.75] - 1516.00 [918.00, 1523.00]
## ast (median [IQR]) 127.00 [102.30, 141.05] 99.10 [73.36, 136.25] - 147.25 [86.80, 238.70]
## trig (median [IQR]) 118.00 [85.50, 183.00] 100.00 [74.00, 135.00] - 127.50 [101.50, 164.50]
## platelet (median [IQR]) 213.50 [180.75, 329.25] 278.00 [226.50, 336.50] - 145.00 [126.00, 302.00]
## protime (median [IQR]) 10.60 [10.25, 11.35] 10.30 [9.90, 10.70] - 12.20 [11.50, 12.90]
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0)
## 3 7 (46.7) 59 (44.7) - 1 (20.0)
## 4 2 (13.3) 15 (11.4) - 4 (80.0)
## Stratified by sex:ascites:hepato
## m:0:1 f:0:1 m:1:1
## n 18 123 3
## time (median [IQR]) 1299.50 [821.75, 2088.50] 1741.00 [1083.50, 2391.00] 1217.00 [704.00, 1491.00]
## age (median [IQR]) 58.26 [51.30, 66.61] 49.34 [41.38, 55.63] 67.91 [62.06, 73.17]
## bili (median [IQR]) 2.30 [1.25, 5.20] 2.10 [1.00, 5.00] 1.30 [1.05, 4.20]
## chol (median [IQR]) 361.00 [251.25, 426.75] 322.00 [260.00, 408.00] 197.00 [174.00, 220.00]
## albumin (median [IQR]) 3.71 [3.38, 3.85] 3.48 [3.21, 3.65] 3.03 [2.65, 3.05]
## copper (median [IQR]) 114.50 [81.75, 197.00] 76.00 [50.00, 125.50] 73.00 [58.00, 226.50]
## alk.phos (median [IQR]) 1222.50 [1028.75, 2387.00] 1428.00 [958.00, 2280.00] 983.00 [855.50, 1047.50]
## ast (median [IQR]) 118.58 [84.28, 168.95] 120.90 [90.45, 158.88] 71.00 [58.75, 114.55]
## trig (median [IQR]) 127.00 [95.00, 153.75] 108.50 [89.50, 149.75] 101.50 [75.25, 127.75]
## platelet (median [IQR]) 250.00 [189.50, 298.75] 239.00 [184.50, 306.00] 156.00 [126.50, 184.50]
## protime (median [IQR]) 10.90 [10.35, 11.28] 10.60 [10.00, 11.50] 11.20 [11.10, 12.20]
## trt = 2 (%) 7 (38.9) 72 (58.5) 2 (66.7)
## ascites = 1 (%) 0 (0.0) 0 (0.0) 3 (100.0)
## spiders = 1 (%) 2 (11.1) 53 (43.1) 1 (33.3)
## edema (%)
## 0 15 (83.3) 106 (86.2) 1 (33.3)
## 0.5 3 (16.7) 13 (10.6) 0 ( 0.0)
## 1 0 ( 0.0) 4 ( 3.3) 2 (66.7)
## stage (%)
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 3 (16.7) 14 (11.4) 0 ( 0.0)
## 3 5 (27.8) 48 (39.0) 0 ( 0.0)
## 4 10 (55.6) 61 (49.6) 3 (100.0)
## Stratified by sex:ascites:hepato
## f:1:1 p test
## n 16
## time (median [IQR]) 341.00 [206.75, 915.75] <0.001 nonnorm
## age (median [IQR]) 54.92 [48.32, 61.36] <0.001 nonnorm
## bili (median [IQR]) 10.60 [4.00, 17.25] <0.001 nonnorm
## chol (median [IQR]) 278.50 [222.00, 382.25] 0.079 nonnorm
## albumin (median [IQR]) 3.03 [2.63, 3.32] <0.001 nonnorm
## copper (median [IQR]) 182.00 [130.50, 215.00] <0.001 nonnorm
## alk.phos (median [IQR]) 1775.50 [1070.25, 3708.05] 0.077 nonnorm
## ast (median [IQR]) 135.97 [105.46, 176.51] 0.022 nonnorm
## trig (median [IQR]) 161.50 [118.00, 188.00] 0.008 nonnorm
## platelet (median [IQR]) 178.00 [138.50, 224.00] <0.001 nonnorm
## protime (median [IQR]) 11.60 [11.07, 12.03] <0.001 nonnorm
## trt = 2 (%) 6 (37.5) NaN
## ascites = 1 (%) 16 (100.0) NaN
## spiders = 1 (%) 11 (68.8) NaN
## edema (%) NaN
## 0 3 (18.8)
## 0.5 4 (25.0)
## 1 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0)
## 2 2 (12.5)
## 3 0 ( 0.0)
## 4 14 (87.5)
## quote
print(tableOne, quote = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## "Stratified by sex:ascites:hepato"
## "" "m:0:0" "f:0:0" "m:1:0" "f:1:0" "m:0:1"
## "n" "15" "132" "0" "5" "18"
## "time (mean (sd))" "2412.33 (1422.19)" "2375.19 (1020.62)" "-" "1130.20 (1382.64)" "1702.78 (1198.55)"
## "age (mean (sd))" " 51.07 (12.11)" " 48.41 (10.22)" "-" " 64.57 (10.52)" " 58.60 (9.18)"
## "bili (mean (sd))" " 2.24 (1.31)" " 1.61 (2.40)" "-" " 7.14 (7.65)" " 3.37 (2.61)"
## "chol (mean (sd))" " 360.33 (164.98)" " 336.99 (158.86)" "-" " 253.00 (86.81)" " 382.61 (194.31)"
## "albumin (mean (sd))" " 3.72 (0.44)" " 3.67 (0.34)" "-" " 2.85 (0.54)" " 3.59 (0.34)"
## "copper (mean (sd))" " 166.27 (107.94)" " 65.56 (56.66)" "-" " 112.40 (72.72)" " 142.44 (82.94)"
## "alk.phos (mean (sd))" "2839.41 (3424.63)" "1634.45 (1732.65)" "-" "1257.60 (416.42)" "1822.89 (1260.72)"
## "ast (mean (sd))" " 125.02 (43.62)" " 111.35 (52.10)" "-" " 170.83 (118.75)" " 124.49 (49.03)"
## "trig (mean (sd))" " 132.20 (55.55)" " 110.70 (52.29)" "-" " 138.50 (67.34)" " 138.00 (49.34)"
## "platelet (mean (sd))" " 246.57 (88.70)" " 287.36 (87.74)" "-" " 192.80 (116.54)" " 240.94 (86.30)"
## "protime (mean (sd))" " 11.07 (1.19)" " 10.42 (0.89)" "-" " 12.02 (1.16)" " 10.82 (0.63)"
## "trt = 2 (%)" " 6 (40.0) " " 59 (44.7) " "-" " 2 (40.0) " " 7 (38.9) "
## "ascites = 1 (%)" " 0 (0.0) " " 0 (0.0) " "-" " 5 (100.0) " " 0 (0.0) "
## "spiders = 1 (%)" " 1 (6.7) " " 21 (15.9) " "-" " 1 (20.0) " " 2 (11.1) "
## "edema (%)" " " " " "-" " " " "
## " 0" " 13 (86.7) " " 123 (93.2) " "-" " 2 (40.0) " " 15 (83.3) "
## " 0.5" " 1 ( 6.7) " " 8 ( 6.1) " "-" " 0 ( 0.0) " " 3 (16.7) "
## " 1" " 1 ( 6.7) " " 1 ( 0.8) " "-" " 3 (60.0) " " 0 ( 0.0) "
## "stage (%)" " " " " "-" " " " "
## " 1" " 3 (20.0) " " 13 ( 9.8) " "-" " 0 ( 0.0) " " 0 ( 0.0) "
## " 2" " 3 (20.0) " " 45 (34.1) " "-" " 0 ( 0.0) " " 3 (16.7) "
## " 3" " 7 (46.7) " " 59 (44.7) " "-" " 1 (20.0) " " 5 (27.8) "
## " 4" " 2 (13.3) " " 15 (11.4) " "-" " 4 (80.0) " " 10 (55.6) "
## "Stratified by sex:ascites:hepato"
## "" "f:0:1" "m:1:1" "f:1:1" "p" "test"
## "n" "123" "3" " 16" "" ""
## "time (mean (sd))" "1838.28 (1007.36)" "1057.67 (799.01)" " 668.25 (805.64)" "<0.001" ""
## "age (mean (sd))" " 48.71 (9.71)" " 67.52 (11.11)" " 54.92 (8.91)" "<0.001" ""
## "bili (mean (sd))" " 3.97 (4.84)" " 3.07 (3.50)" " 10.97 (7.80)" "<0.001" ""
## "chol (mean (sd))" " 411.14 (298.67)" " 197.00 (65.05)" " 364.50 (247.72)" " 0.210" ""
## "albumin (mean (sd))" " 3.43 (0.39)" " 2.79 (0.45)" " 3.02 (0.45)" "<0.001" ""
## "copper (mean (sd))" " 104.11 (85.01)" " 165.33 (186.51)" " 184.13 (125.71)" "<0.001" ""
## "alk.phos (mean (sd))" "2259.90 (2445.16)" " 941.00 (195.41)" "2522.41 (2043.39)" " 0.109" ""
## "ast (mean (sd))" " 130.47 (60.16)" " 91.87 (58.65)" " 140.36 (43.22)" " 0.032" ""
## "trig (mean (sd))" " 127.48 (60.14)" " 101.50 (74.25)" " 193.71 (145.19)" " 0.001" ""
## "platelet (mean (sd))" " 253.06 (97.99)" " 155.33 (58.00)" " 197.38 (94.71)" "<0.001" ""
## "protime (mean (sd))" " 10.79 (0.96)" " 11.80 (1.22)" " 11.79 (1.09)" "<0.001" ""
## "trt = 2 (%)" " 72 (58.5) " " 2 (66.7) " " 6 (37.5) " " NaN" ""
## "ascites = 1 (%)" " 0 (0.0) " " 3 (100.0) " " 16 (100.0) " " NaN" ""
## "spiders = 1 (%)" " 53 (43.1) " " 1 (33.3) " " 11 (68.8) " " NaN" ""
## "edema (%)" " " " " " " " NaN" ""
## " 0" " 106 (86.2) " " 1 (33.3) " " 3 (18.8) " "" ""
## " 0.5" " 13 (10.6) " " 0 ( 0.0) " " 4 (25.0) " "" ""
## " 1" " 4 ( 3.3) " " 2 (66.7) " " 9 (56.2) " "" ""
## "stage (%)" " " " " " " " NaN" ""
## " 1" " 0 ( 0.0) " " 0 ( 0.0) " " 0 ( 0.0) " "" ""
## " 2" " 14 (11.4) " " 0 ( 0.0) " " 2 (12.5) " "" ""
## " 3" " 48 (39.0) " " 0 ( 0.0) " " 0 ( 0.0) " "" ""
## " 4" " 61 (49.6) " " 3 (100.0) " " 14 (87.5) " "" ""
## Partially nonnormal
print(tableOne, nonnormal = nonNormalVars)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0
## n 15 132 0 5
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52)
## bili (median [IQR]) 1.90 [1.55, 2.45] 0.90 [0.60, 1.42] - 2.50 [1.40, 12.60]
## chol (median [IQR]) 317.00 [250.50, 438.00] 296.00 [242.00, 390.00] - 206.00 [200.00, 302.00]
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54)
## copper (median [IQR]) 158.00 [98.00, 213.50] 52.00 [32.00, 78.50] - 108.00 [58.00, 140.00]
## alk.phos (median [IQR]) 1056.00 [740.00, 3470.70] 1177.50 [793.25, 1689.75] - 1516.00 [918.00, 1523.00]
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75)
## trig (median [IQR]) 118.00 [85.50, 183.00] 100.00 [74.00, 135.00] - 127.50 [101.50, 164.50]
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54)
## protime (median [IQR]) 10.60 [10.25, 11.35] 10.30 [9.90, 10.70] - 12.20 [11.50, 12.90]
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0)
## 3 7 (46.7) 59 (44.7) - 1 (20.0)
## 4 2 (13.3) 15 (11.4) - 4 (80.0)
## Stratified by sex:ascites:hepato
## m:0:1 f:0:1 m:1:1
## n 18 123 3
## time (mean (sd)) 1702.78 (1198.55) 1838.28 (1007.36) 1057.67 (799.01)
## age (mean (sd)) 58.60 (9.18) 48.71 (9.71) 67.52 (11.11)
## bili (median [IQR]) 2.30 [1.25, 5.20] 2.10 [1.00, 5.00] 1.30 [1.05, 4.20]
## chol (median [IQR]) 361.00 [251.25, 426.75] 322.00 [260.00, 408.00] 197.00 [174.00, 220.00]
## albumin (mean (sd)) 3.59 (0.34) 3.43 (0.39) 2.79 (0.45)
## copper (median [IQR]) 114.50 [81.75, 197.00] 76.00 [50.00, 125.50] 73.00 [58.00, 226.50]
## alk.phos (median [IQR]) 1222.50 [1028.75, 2387.00] 1428.00 [958.00, 2280.00] 983.00 [855.50, 1047.50]
## ast (mean (sd)) 124.49 (49.03) 130.47 (60.16) 91.87 (58.65)
## trig (median [IQR]) 127.00 [95.00, 153.75] 108.50 [89.50, 149.75] 101.50 [75.25, 127.75]
## platelet (mean (sd)) 240.94 (86.30) 253.06 (97.99) 155.33 (58.00)
## protime (median [IQR]) 10.90 [10.35, 11.28] 10.60 [10.00, 11.50] 11.20 [11.10, 12.20]
## trt = 2 (%) 7 (38.9) 72 (58.5) 2 (66.7)
## ascites = 1 (%) 0 (0.0) 0 (0.0) 3 (100.0)
## spiders = 1 (%) 2 (11.1) 53 (43.1) 1 (33.3)
## edema (%)
## 0 15 (83.3) 106 (86.2) 1 (33.3)
## 0.5 3 (16.7) 13 (10.6) 0 ( 0.0)
## 1 0 ( 0.0) 4 ( 3.3) 2 (66.7)
## stage (%)
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 3 (16.7) 14 (11.4) 0 ( 0.0)
## 3 5 (27.8) 48 (39.0) 0 ( 0.0)
## 4 10 (55.6) 61 (49.6) 3 (100.0)
## Stratified by sex:ascites:hepato
## f:1:1 p test
## n 16
## time (mean (sd)) 668.25 (805.64) <0.001
## age (mean (sd)) 54.92 (8.91) <0.001
## bili (median [IQR]) 10.60 [4.00, 17.25] <0.001 nonnorm
## chol (median [IQR]) 278.50 [222.00, 382.25] 0.079 nonnorm
## albumin (mean (sd)) 3.02 (0.45) <0.001
## copper (median [IQR]) 182.00 [130.50, 215.00] <0.001 nonnorm
## alk.phos (median [IQR]) 1775.50 [1070.25, 3708.05] 0.077 nonnorm
## ast (mean (sd)) 140.36 (43.22) 0.032
## trig (median [IQR]) 161.50 [118.00, 188.00] 0.008 nonnorm
## platelet (mean (sd)) 197.38 (94.71) <0.001
## protime (median [IQR]) 11.60 [11.07, 12.03] <0.001 nonnorm
## trt = 2 (%) 6 (37.5) NaN
## ascites = 1 (%) 16 (100.0) NaN
## spiders = 1 (%) 11 (68.8) NaN
## edema (%) NaN
## 0 3 (18.8)
## 0.5 4 (25.0)
## 1 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0)
## 2 2 (12.5)
## 3 0 ( 0.0)
## 4 14 (87.5)
## Partially nonnormal median [range]
print(tableOne, nonnormal = nonNormalVars, minMax = TRUE)### showAllLevels
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0
## n 15 132 0 5
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52)
## bili (median [range]) 1.90 [0.60, 6.00] 0.90 [0.30, 22.50] - 2.50 [1.30, 17.90]
## chol (median [range]) 317.00 [168.00, 660.00] 296.00 [120.00, 1276.00] - 206.00 [175.00, 382.00]
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54)
## copper (median [range]) 158.00 [13.00, 444.00] 52.00 [4.00, 464.00] - 108.00 [36.00, 220.00]
## alk.phos (median [range]) 1056.00 [516.00, 10396.80] 1177.50 [369.00, 12258.80] - 1516.00 [705.00, 1626.00]
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75)
## trig (median [range]) 118.00 [55.00, 219.00] 100.00 [44.00, 382.00] - 127.50 [70.00, 229.00]
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54)
## protime (median [range]) 10.60 [9.70, 14.10] 10.30 [9.00, 17.10] - 12.20 [10.30, 13.20]
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0)
## 3 7 (46.7) 59 (44.7) - 1 (20.0)
## 4 2 (13.3) 15 (11.4) - 4 (80.0)
## Stratified by sex:ascites:hepato
## m:0:1 f:0:1 m:1:1
## n 18 123 3
## time (mean (sd)) 1702.78 (1198.55) 1838.28 (1007.36) 1057.67 (799.01)
## age (mean (sd)) 58.60 (9.18) 48.71 (9.71) 67.52 (11.11)
## bili (median [range]) 2.30 [0.60, 8.60] 2.10 [0.40, 28.00] 1.30 [0.80, 7.10]
## chol (median [range]) 361.00 [178.00, 1000.00] 322.00 [149.00, 1775.00] 197.00 [151.00, 243.00]
## albumin (mean (sd)) 3.59 (0.34) 3.43 (0.39) 2.79 (0.45)
## copper (median [range]) 114.50 [25.00, 290.00] 76.00 [11.00, 588.00] 73.00 [43.00, 380.00]
## alk.phos (median [range]) 1222.50 [681.00, 5719.00] 1428.00 [289.00, 13862.40] 983.00 [728.00, 1112.00]
## ast (mean (sd)) 124.49 (49.03) 130.47 (60.16) 91.87 (58.65)
## trig (median [range]) 127.00 [83.00, 242.00] 108.50 [33.00, 322.00] 101.50 [49.00, 154.00]
## platelet (mean (sd)) 240.94 (86.30) 253.06 (97.99) 155.33 (58.00)
## protime (median [range]) 10.90 [9.80, 12.00] 10.60 [9.20, 13.30] 11.20 [11.00, 13.20]
## trt = 2 (%) 7 (38.9) 72 (58.5) 2 (66.7)
## ascites = 1 (%) 0 (0.0) 0 (0.0) 3 (100.0)
## spiders = 1 (%) 2 (11.1) 53 (43.1) 1 (33.3)
## edema (%)
## 0 15 (83.3) 106 (86.2) 1 (33.3)
## 0.5 3 (16.7) 13 (10.6) 0 ( 0.0)
## 1 0 ( 0.0) 4 ( 3.3) 2 (66.7)
## stage (%)
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 3 (16.7) 14 (11.4) 0 ( 0.0)
## 3 5 (27.8) 48 (39.0) 0 ( 0.0)
## 4 10 (55.6) 61 (49.6) 3 (100.0)
## Stratified by sex:ascites:hepato
## f:1:1 p test
## n 16
## time (mean (sd)) 668.25 (805.64) <0.001
## age (mean (sd)) 54.92 (8.91) <0.001
## bili (median [range]) 10.60 [1.20, 24.50] <0.001 nonnorm
## chol (median [range]) 278.50 [175.00, 1092.00] 0.079 nonnorm
## albumin (mean (sd)) 3.02 (0.45) <0.001
## copper (median [range]) 182.00 [16.00, 558.00] <0.001 nonnorm
## alk.phos (median [range]) 1775.50 [559.00, 6931.20] 0.077 nonnorm
## ast (mean (sd)) 140.36 (43.22) 0.032
## trig (median [range]) 161.50 [68.00, 598.00] 0.008 nonnorm
## platelet (mean (sd)) 197.38 (94.71) <0.001
## protime (median [range]) 11.60 [10.60, 15.20] <0.001 nonnorm
## trt = 2 (%) 6 (37.5) NaN
## ascites = 1 (%) 16 (100.0) NaN
## spiders = 1 (%) 11 (68.8) NaN
## edema (%) NaN
## 0 3 (18.8)
## 0.5 4 (25.0)
## 1 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0)
## 2 2 (12.5)
## 3 0 ( 0.0)
## 4 14 (87.5)
print(tableOne, showAllLevels = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## level m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt (%) 1 9 (60.0) 73 (55.3) - 3 (60.0) 11 (61.1)
## 2 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites (%) 0 15 (100.0) 132 (100.0) - 0 ( 0.0) 18 (100.0)
## 1 0 ( 0.0) 0 ( 0.0) - 5 (100.0) 0 ( 0.0)
## spiders (%) 0 14 (93.3) 111 (84.1) - 4 (80.0) 16 (88.9)
## 1 1 ( 6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt (%) 51 (41.5) 1 (33.3) 10 (62.5) NaN
## 72 (58.5) 2 (66.7) 6 (37.5)
## ascites (%) 123 (100.0) 0 ( 0.0) 0 ( 0.0) NaN
## 0 ( 0.0) 3 (100.0) 16 (100.0)
## spiders (%) 70 (56.9) 2 (66.7) 5 (31.2) NaN
## 53 (43.1) 1 (33.3) 11 (68.8)
## edema (%) 106 (86.2) 1 (33.3) 3 (18.8) NaN
## 13 (10.6) 0 ( 0.0) 4 (25.0)
## 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) 0 ( 0.0) 0 ( 0.0) 0 ( 0.0) NaN
## 14 (11.4) 0 ( 0.0) 2 (12.5)
## 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 61 (49.6) 3 (100.0) 14 (87.5)
## test
print(tableOne, test = FALSE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64)
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91)
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80)
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72)
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45)
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71)
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39)
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22)
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19)
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71)
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09)
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5)
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0)
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8)
## edema (%)
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%)
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## pDigits
print(tableOne, pDigits = 5)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## No explanation
print(tableOne, explain = FALSE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1 f:0:1
## n 15 132 0 5 18 123
## time 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55) 1838.28 (1007.36)
## age 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18) 48.71 (9.71)
## bili 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61) 3.97 (4.84)
## chol 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31) 411.14 (298.67)
## albumin 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34) 3.43 (0.39)
## copper 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94) 104.11 (85.01)
## alk.phos 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72) 2259.90 (2445.16)
## ast 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03) 130.47 (60.16)
## trig 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34) 127.48 (60.14)
## platelet 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30) 253.06 (97.99)
## protime 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63) 10.79 (0.96)
## trt = 2 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9) 72 (58.5)
## ascites = 1 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0) 0 (0.0)
## spiders = 1 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1) 53 (43.1)
## edema -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3) 106 (86.2)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7) 13 (10.6)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0) 4 ( 3.3)
## stage -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7) 14 (11.4)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8) 48 (39.0)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6) 61 (49.6)
## Stratified by sex:ascites:hepato
## m:1:1 f:1:1 p test
## n 3 16
## time 1057.67 (799.01) 668.25 (805.64) <0.001
## age 67.52 (11.11) 54.92 (8.91) <0.001
## bili 3.07 (3.50) 10.97 (7.80) <0.001
## chol 197.00 (65.05) 364.50 (247.72) 0.210
## albumin 2.79 (0.45) 3.02 (0.45) <0.001
## copper 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast 91.87 (58.65) 140.36 (43.22) 0.032
## trig 101.50 (74.25) 193.71 (145.19) 0.001
## platelet 155.33 (58.00) 197.38 (94.71) <0.001
## protime 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 2 (66.7) 6 (37.5) NaN
## ascites = 1 3 (100.0) 16 (100.0) NaN
## spiders = 1 1 (33.3) 11 (68.8) NaN
## edema NaN
## 0 1 (33.3) 3 (18.8)
## 0.5 0 ( 0.0) 4 (25.0)
## 1 2 (66.7) 9 (56.2)
## stage NaN
## 1 0 ( 0.0) 0 ( 0.0)
## 2 0 ( 0.0) 2 (12.5)
## 3 0 ( 0.0) 0 ( 0.0)
## 4 3 (100.0) 14 (87.5)
## No spaces
print(tableOne, noSpaces = TRUE, quote = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## "Stratified by sex:ascites:hepato"
## "" "m:0:0" "f:0:0" "m:1:0" "f:1:0" "m:0:1"
## "n" "15" "132" "0" "5" "18"
## "time (mean (sd))" "2412.33 (1422.19)" "2375.19 (1020.62)" "-" "1130.20 (1382.64)" "1702.78 (1198.55)"
## "age (mean (sd))" "51.07 (12.11)" "48.41 (10.22)" "-" "64.57 (10.52)" "58.60 (9.18)"
## "bili (mean (sd))" "2.24 (1.31)" "1.61 (2.40)" "-" "7.14 (7.65)" "3.37 (2.61)"
## "chol (mean (sd))" "360.33 (164.98)" "336.99 (158.86)" "-" "253.00 (86.81)" "382.61 (194.31)"
## "albumin (mean (sd))" "3.72 (0.44)" "3.67 (0.34)" "-" "2.85 (0.54)" "3.59 (0.34)"
## "copper (mean (sd))" "166.27 (107.94)" "65.56 (56.66)" "-" "112.40 (72.72)" "142.44 (82.94)"
## "alk.phos (mean (sd))" "2839.41 (3424.63)" "1634.45 (1732.65)" "-" "1257.60 (416.42)" "1822.89 (1260.72)"
## "ast (mean (sd))" "125.02 (43.62)" "111.35 (52.10)" "-" "170.83 (118.75)" "124.49 (49.03)"
## "trig (mean (sd))" "132.20 (55.55)" "110.70 (52.29)" "-" "138.50 (67.34)" "138.00 (49.34)"
## "platelet (mean (sd))" "246.57 (88.70)" "287.36 (87.74)" "-" "192.80 (116.54)" "240.94 (86.30)"
## "protime (mean (sd))" "11.07 (1.19)" "10.42 (0.89)" "-" "12.02 (1.16)" "10.82 (0.63)"
## "trt = 2 (%)" "6 (40.0)" "59 (44.7)" "-" "2 (40.0)" "7 (38.9)"
## "ascites = 1 (%)" "0 (0.0)" "0 (0.0)" "-" "5 (100.0)" "0 (0.0)"
## "spiders = 1 (%)" "1 (6.7)" "21 (15.9)" "-" "1 (20.0)" "2 (11.1)"
## "edema (%)" "" "" "-" "" ""
## " 0" "13 (86.7)" "123 (93.2)" "-" "2 (40.0)" "15 (83.3)"
## " 0.5" "1 (6.7)" "8 (6.1)" "-" "0 (0.0)" "3 (16.7)"
## " 1" "1 (6.7)" "1 (0.8)" "-" "3 (60.0)" "0 (0.0)"
## "stage (%)" "" "" "-" "" ""
## " 1" "3 (20.0)" "13 (9.8)" "-" "0 (0.0)" "0 (0.0)"
## " 2" "3 (20.0)" "45 (34.1)" "-" "0 (0.0)" "3 (16.7)"
## " 3" "7 (46.7)" "59 (44.7)" "-" "1 (20.0)" "5 (27.8)"
## " 4" "2 (13.3)" "15 (11.4)" "-" "4 (80.0)" "10 (55.6)"
## "Stratified by sex:ascites:hepato"
## "" "f:0:1" "m:1:1" "f:1:1" "p" "test"
## "n" "123" "3" "16" "" ""
## "time (mean (sd))" "1838.28 (1007.36)" "1057.67 (799.01)" "668.25 (805.64)" "<0.001" ""
## "age (mean (sd))" "48.71 (9.71)" "67.52 (11.11)" "54.92 (8.91)" "<0.001" ""
## "bili (mean (sd))" "3.97 (4.84)" "3.07 (3.50)" "10.97 (7.80)" "<0.001" ""
## "chol (mean (sd))" "411.14 (298.67)" "197.00 (65.05)" "364.50 (247.72)" "0.210" ""
## "albumin (mean (sd))" "3.43 (0.39)" "2.79 (0.45)" "3.02 (0.45)" "<0.001" ""
## "copper (mean (sd))" "104.11 (85.01)" "165.33 (186.51)" "184.13 (125.71)" "<0.001" ""
## "alk.phos (mean (sd))" "2259.90 (2445.16)" "941.00 (195.41)" "2522.41 (2043.39)" "0.109" ""
## "ast (mean (sd))" "130.47 (60.16)" "91.87 (58.65)" "140.36 (43.22)" "0.032" ""
## "trig (mean (sd))" "127.48 (60.14)" "101.50 (74.25)" "193.71 (145.19)" "0.001" ""
## "platelet (mean (sd))" "253.06 (97.99)" "155.33 (58.00)" "197.38 (94.71)" "<0.001" ""
## "protime (mean (sd))" "10.79 (0.96)" "11.80 (1.22)" "11.79 (1.09)" "<0.001" ""
## "trt = 2 (%)" "72 (58.5)" "2 (66.7)" "6 (37.5)" "NaN" ""
## "ascites = 1 (%)" "0 (0.0)" "3 (100.0)" "16 (100.0)" "NaN" ""
## "spiders = 1 (%)" "53 (43.1)" "1 (33.3)" "11 (68.8)" "NaN" ""
## "edema (%)" "" "" "" "NaN" ""
## " 0" "106 (86.2)" "1 (33.3)" "3 (18.8)" "" ""
## " 0.5" "13 (10.6)" "0 (0.0)" "4 (25.0)" "" ""
## " 1" "4 (3.3)" "2 (66.7)" "9 (56.2)" "" ""
## "stage (%)" "" "" "" "NaN" ""
## " 1" "0 (0.0)" "0 (0.0)" "0 (0.0)" "" ""
## " 2" "14 (11.4)" "0 (0.0)" "2 (12.5)" "" ""
## " 3" "48 (39.0)" "0 (0.0)" "0 (0.0)" "" ""
## " 4" "61 (49.6)" "3 (100.0)" "14 (87.5)" "" ""
Categorical variables
### Behaviors on correct data format (non-stratified, single variable)
## Creation
catTable <- CreateTableOne(vars = "trt", data = dataFrame)
## NOTE: no numeric/integer variables supplied, using CreateCatTable()
## print method
catTable
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
## summary method
summary(catTable)
## strata: Overall
## var n miss p.miss level freq percent cum.percent
## trt 418 106 25.4 1 158 50.6 50.6
## 2 154 49.4 100.0
##
## digits
summary(catTable, digits = 5)
## strata: Overall
## var n miss p.miss level freq percent cum.percent
## trt 418 106 25.35885 1 158 50.64103 50.64103
## 2 154 49.35897 100.00000
##
## print method by default
print(catTable)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
## format
print(catTable, format = "fp")
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
print(catTable, format = "f")
##
## Overall
## n 418
## trt = 2 154
print(catTable, format = "p")
##
## Overall
## n 418
## trt = 2 (%) 49.4
print(catTable, format = "pf")
##
## Overall
## n 418
## trt = 2 % (freq) 49.4 (154)
## digits
print(catTable, digits = 5)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.35897)
## exact
print(catTable, exact = TRUE)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
## Partially exact
print(catTable, exact = exactVars)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
## quote
print(catTable, quote = TRUE)
## ""
## "" "Overall"
## "n" "418"
## "trt = 2 (%)" "154 (49.4) "
## No test
print(catTable, test = TRUE)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
## pDigits
print(catTable, pDigits = 5)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
## showAllLevel
print(catTable, showAllLevels = TRUE)
##
## level Overall
## n 418
## trt (%) 1 158 (50.6)
## 2 154 (49.4)
## explain
print(catTable, explain = FALSE)
##
## Overall
## n 418
## trt = 2 154 (49.4)
## CrossTable
print(catTable, CrossTable = TRUE)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
## print and return object
matObj <- print(catTable, printToggle = TRUE)
##
## Overall
## n 418
## trt = 2 (%) 154 (49.4)
matObj
##
## Overall
## n "418"
## trt = 2 (%) "154 (49.4) "
## attr(,"vecColWidths")
## Overall
## 3
## do not print and return as object
matObj <- print(catTable, printToggle = FALSE)
matObj
##
## Overall
## n "418"
## trt = 2 (%) "154 (49.4) "
## attr(,"vecColWidths")
## Overall
## 3
### Behaviors on correct data format (non-stratified)
## Creation
catTable <- CreateTableOne(vars = vars, data = dataFrame)
## print method
catTable
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## summary method
summary(catTable)
##
## ### Summary of continuous variables ###
##
## strata: Overall
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 418 0 0.0 1918 1104.7 1730 1092.8 2614 41.0 4795 0.47 -0.5
## age 418 0 0.0 51 10.4 51 42.8 58 26.3 78 0.09 -0.6
## bili 418 0 0.0 3 4.4 1 0.8 3 0.3 28 2.72 8.1
## chol 418 134 32.1 370 231.9 310 249.5 400 120.0 1775 3.41 14.3
## albumin 418 0 0.0 3 0.4 4 3.2 4 2.0 5 -0.47 0.6
## copper 418 108 25.8 98 85.6 73 41.2 123 4.0 588 2.30 7.6
## alk.phos 418 106 25.4 1983 2140.4 1259 871.5 1980 289.0 13862 2.99 9.7
## ast 418 106 25.4 123 56.7 115 80.6 152 26.4 457 1.45 4.3
## trig 418 136 32.5 125 65.1 108 84.2 151 33.0 598 2.52 11.8
## platelet 418 11 2.6 257 98.3 251 188.5 318 62.0 721 0.63 0.9
## protime 418 2 0.5 11 1.0 11 10.0 11 9.0 18 2.22 10.0
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## strata: Overall
## var n miss p.miss level freq percent cum.percent
## trt 418 106 25.4 1 158 50.6 50.6
## 2 154 49.4 100.0
##
## ascites 418 106 25.4 0 288 92.3 92.3
## 1 24 7.7 100.0
##
## spiders 418 106 25.4 0 222 71.2 71.2
## 1 90 28.8 100.0
##
## edema 418 0 0.0 0 354 84.7 84.7
## 0.5 44 10.5 95.2
## 1 20 4.8 100.0
##
## stage 418 6 1.4 1 21 5.1 5.1
## 2 92 22.3 27.4
## 3 155 37.6 65.0
## 4 144 35.0 100.0
##
## digits
summary(catTable, digits = 5)
##
## ### Summary of continuous variables ###
##
## strata: Overall
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 418 0 0.00000 1917.7823 1104.67299 1730.000 1092.7500 2613.500 41.000 4795.000 0.47260 -0.48214
## age 418 0 0.00000 50.7416 10.44721 51.001 42.8323 58.241 26.278 78.439 0.08685 -0.61673
## bili 418 0 0.00000 3.2208 4.40751 1.400 0.8000 3.400 0.300 28.000 2.71761 8.06534
## chol 418 134 32.05742 369.5106 231.94455 309.500 249.5000 400.000 120.000 1775.000 3.40853 14.33787
## albumin 418 0 0.00000 3.4974 0.42497 3.530 3.2425 3.770 1.960 4.640 -0.46753 0.56674
## copper 418 108 25.83732 97.6484 85.61392 73.000 41.2500 123.000 4.000 588.000 2.30364 7.62402
## alk.phos 418 106 25.35885 1982.6558 2140.38882 1259.000 871.5000 1980.000 289.000 13862.400 2.99283 9.66255
## ast 418 106 25.35885 122.5563 56.69952 114.700 80.6000 151.900 26.350 457.250 1.44920 4.31198
## trig 418 136 32.53589 124.7021 65.14864 108.000 84.2500 151.000 33.000 598.000 2.52390 11.80275
## platelet 418 11 2.63158 257.0246 98.32558 251.000 188.5000 318.000 62.000 721.000 0.62710 0.86304
## protime 418 2 0.47847 10.7317 1.02200 10.600 10.0000 11.100 9.000 18.000 2.22328 10.04077
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## strata: Overall
## var n miss p.miss level freq percent cum.percent
## trt 418 106 25.35885 1 158 50.64103 50.64103
## 2 154 49.35897 100.00000
##
## ascites 418 106 25.35885 0 288 92.30769 92.30769
## 1 24 7.69231 100.00000
##
## spiders 418 106 25.35885 0 222 71.15385 71.15385
## 1 90 28.84615 100.00000
##
## edema 418 0 0.00000 0 354 84.68900 84.68900
## 0.5 44 10.52632 95.21531
## 1 20 4.78469 100.00000
##
## stage 418 6 1.43541 1 21 5.09709 5.09709
## 2 92 22.33010 27.42718
## 3 155 37.62136 65.04854
## 4 144 34.95146 100.00000
##
## print method by default
print(catTable)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## format
print(catTable, format = "fp")
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
print(catTable, format = "f")
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 154
## ascites = 1 24
## spiders = 1 90
## edema
## 0 354
## 0.5 44
## 1 20
## stage
## 1 21
## 2 92
## 3 155
## 4 144
print(catTable, format = "p")
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 49.4
## ascites = 1 (%) 7.7
## spiders = 1 (%) 28.8
## edema (%)
## 0 84.7
## 0.5 10.5
## 1 4.8
## stage (%)
## 1 5.1
## 2 22.3
## 3 37.6
## 4 35.0
print(catTable, format = "pf")
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 % (freq) 49.4 (154)
## ascites = 1 % (freq) 7.7 (24)
## spiders = 1 % (freq) 28.8 (90)
## edema % (freq)
## 0 84.7 (354)
## 0.5 10.5 ( 44)
## 1 4.8 ( 20)
## stage % (freq)
## 1 5.1 ( 21)
## 2 22.3 ( 92)
## 3 37.6 (155)
## 4 35.0 (144)
## digits
print(catTable, digits = 5)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## exact
print(catTable, exact = TRUE)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## Partially exact
print(catTable, exact = exactVars)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## quote
print(catTable, quote = TRUE)
## ""
## "" "Overall"
## "n" "418"
## "time (mean (sd))" "1917.78 (1104.67)"
## "age (mean (sd))" " 50.74 (10.45)"
## "bili (mean (sd))" " 3.22 (4.41)"
## "chol (mean (sd))" " 369.51 (231.94)"
## "albumin (mean (sd))" " 3.50 (0.42)"
## "copper (mean (sd))" " 97.65 (85.61)"
## "alk.phos (mean (sd))" "1982.66 (2140.39)"
## "ast (mean (sd))" " 122.56 (56.70)"
## "trig (mean (sd))" " 124.70 (65.15)"
## "platelet (mean (sd))" " 257.02 (98.33)"
## "protime (mean (sd))" " 10.73 (1.02)"
## "trt = 2 (%)" " 154 (49.4) "
## "ascites = 1 (%)" " 24 (7.7) "
## "spiders = 1 (%)" " 90 (28.8) "
## "edema (%)" " "
## " 0" " 354 (84.7) "
## " 0.5" " 44 (10.5) "
## " 1" " 20 ( 4.8) "
## "stage (%)" " "
## " 1" " 21 ( 5.1) "
## " 2" " 92 (22.3) "
## " 3" " 155 (37.6) "
## " 4" " 144 (35.0) "
## No test
print(catTable, test = TRUE)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## pDigits
print(catTable, pDigits = 5)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## showAllLevel
print(catTable, showAllLevels = TRUE)
##
## level Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt (%) 1 158 (50.6)
## 2 154 (49.4)
## ascites (%) 0 288 (92.3)
## 1 24 ( 7.7)
## spiders (%) 0 222 (71.2)
## 1 90 (28.8)
## edema (%) 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%) 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## explain
print(catTable, explain = FALSE)
##
## Overall
## n 418
## time 1917.78 (1104.67)
## age 50.74 (10.45)
## bili 3.22 (4.41)
## chol 369.51 (231.94)
## albumin 3.50 (0.42)
## copper 97.65 (85.61)
## alk.phos 1982.66 (2140.39)
## ast 122.56 (56.70)
## trig 124.70 (65.15)
## platelet 257.02 (98.33)
## protime 10.73 (1.02)
## trt = 2 154 (49.4)
## ascites = 1 24 (7.7)
## spiders = 1 90 (28.8)
## edema
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
## CrossTable
print(catTable, CrossTable = TRUE)
##
## Overall
## n 418
## time (mean (sd)) 1917.78 (1104.67)
## age (mean (sd)) 50.74 (10.45)
## bili (mean (sd)) 3.22 (4.41)
## chol (mean (sd)) 369.51 (231.94)
## albumin (mean (sd)) 3.50 (0.42)
## copper (mean (sd)) 97.65 (85.61)
## alk.phos (mean (sd)) 1982.66 (2140.39)
## ast (mean (sd)) 122.56 (56.70)
## trig (mean (sd)) 124.70 (65.15)
## platelet (mean (sd)) 257.02 (98.33)
## protime (mean (sd)) 10.73 (1.02)
## trt = 2 (%) 154 (49.4)
## ascites = 1 (%) 24 (7.7)
## spiders = 1 (%) 90 (28.8)
## edema (%)
## 0 354 (84.7)
## 0.5 44 (10.5)
## 1 20 ( 4.8)
## stage (%)
## 1 21 ( 5.1)
## 2 92 (22.3)
## 3 155 (37.6)
## 4 144 (35.0)
### Behaviors on correct data format (stratified, 2-group)
## Creation
catTable <- CreateTableOne(vars = vars, strata = "sex", data = dataFrame)
## print method
catTable
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## summary method
summary(catTable)
##
## ### Summary of continuous variables ###
##
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 44 0 0 1894 1213.0 1507 1061 2716 140.0 4459 0.8221 -0.4
## age 44 0 0 56 11.0 54 49 65 33.5 78 0.0002 -0.6
## bili 44 0 0 3 2.3 2 1 4 0.6 10 1.4018 1.1
## chol 44 9 20 362 179.0 317 245 426 151.0 1000 1.5922 3.4
## albumin 44 0 0 4 0.5 4 3 4 2.3 4 -0.9236 0.8
## copper 44 8 18 154 100.7 134 81 212 13.0 444 0.9211 0.8
## alk.phos 44 8 18 2173 2418.4 1116 852 2313 516.0 10397 2.4419 5.8
## ast 44 8 18 122 47.0 122 83 153 46.5 222 0.3377 -0.8
## trig 44 9 20 133 52.2 126 91 163 49.0 242 0.4473 -0.7
## platelet 44 1 2 231 85.2 217 166 298 70.0 394 0.0117 -1.0
## protime 44 0 0 11 0.9 11 10 11 9.7 14 1.3761 2.5
## ---------------------------------------------------------------------------------------
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 374 0 0.0 1921 1093.0 1773 1095.5 2606 41.0 4795 0.42 -0.5
## age 374 0 0.0 50 10.2 50 42.4 57 26.3 77 0.07 -0.7
## bili 374 0 0.0 3 4.6 1 0.7 3 0.3 28 2.65 7.4
## chol 374 125 33.4 371 238.7 309 252.0 395 120.0 1775 3.48 14.4
## albumin 374 0 0.0 3 0.4 4 3.2 4 2.0 5 -0.41 0.6
## copper 374 100 26.7 90 80.7 67 40.0 112 4.0 588 2.70 10.9
## alk.phos 374 98 26.2 1958 2105.0 1270 877.5 1964 289.0 13862 3.10 10.6
## ast 374 98 26.2 123 57.9 113 80.6 152 26.4 457 1.52 4.5
## trig 374 127 34.0 123 66.8 106 84.0 146 33.0 598 2.67 12.4
## platelet 374 10 2.7 260 99.4 252 190.0 319 62.0 721 0.65 0.9
## protime 374 2 0.5 11 1.0 11 10.0 11 9.0 18 2.33 10.8
##
## p-values
## pNormal pNonNormal
## time 0.88032351 0.57591934
## age 0.00080217 0.00265366
## bili 0.57291443 0.02892490
## chol 0.84802992 0.94479917
## albumin 0.53603916 0.27292778
## copper 0.00001921 0.00001876
## alk.phos 0.57143514 0.94518752
## ast 0.94936505 0.71776531
## trig 0.39810994 0.10007135
## platelet 0.06788007 0.11288380
## protime 0.15131569 0.04169974
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 44 8 18.2 1 21 58.3 58.3
## 2 15 41.7 100.0
##
## ascites 44 8 18.2 0 33 91.7 91.7
## 1 3 8.3 100.0
##
## spiders 44 8 18.2 0 32 88.9 88.9
## 1 4 11.1 100.0
##
## edema 44 0 0.0 0 36 81.8 81.8
## 0.5 5 11.4 93.2
## 1 3 6.8 100.0
##
## stage 44 0 0.0 1 3 6.8 6.8
## 2 8 18.2 25.0
## 3 16 36.4 61.4
## 4 17 38.6 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 374 98 26.2 1 137 49.6 49.6
## 2 139 50.4 100.0
##
## ascites 374 98 26.2 0 255 92.4 92.4
## 1 21 7.6 100.0
##
## spiders 374 98 26.2 0 190 68.8 68.8
## 1 86 31.2 100.0
##
## edema 374 0 0.0 0 318 85.0 85.0
## 0.5 39 10.4 95.5
## 1 17 4.5 100.0
##
## stage 374 6 1.6 1 18 4.9 4.9
## 2 84 22.8 27.7
## 3 139 37.8 65.5
## 4 127 34.5 100.0
##
##
## p-values
## pApprox pExact
## trt 0.42123 0.37743
## ascites 1.00000 0.74738
## spiders 0.02135 0.01094
## edema 0.77662 0.65149
## stage 0.83074 0.77658
## digits
summary(catTable, digits = 5)
##
## ### Summary of continuous variables ###
##
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 44 0 0.0000 1894.0227 1213.03436 1507.000 1060.7500 2715.750 140.000 4459.000 0.82209739 -0.37536
## age 44 0 0.0000 55.7107 10.97780 54.001 48.9692 64.582 33.476 78.439 0.00016734 -0.60536
## bili 44 0 0.0000 2.8659 2.31948 2.050 1.3000 3.500 0.600 9.500 1.40184985 1.07155
## chol 44 9 20.4545 362.4571 178.99332 317.000 245.0000 426.500 151.000 1000.000 1.59223319 3.41710
## albumin 44 0 0.0000 3.5350 0.45660 3.645 3.3275 3.870 2.270 4.300 -0.92362326 0.81075
## copper 44 8 18.1818 154.2778 100.66539 134.500 80.7500 211.750 13.000 444.000 0.92109164 0.76207
## alk.phos 44 8 18.1818 2172.9500 2418.44624 1116.000 852.0000 2313.000 516.000 10396.800 2.44192745 5.78848
## ast 44 8 18.1818 121.9906 47.01310 121.675 82.7700 153.450 46.500 221.880 0.33765872 -0.78812
## trig 44 9 20.4545 133.4286 52.16844 126.000 91.0000 163.000 49.000 242.000 0.44729489 -0.66362
## platelet 44 1 2.2727 231.1395 85.22563 217.000 165.5000 298.500 70.000 394.000 0.01167704 -0.97192
## protime 44 0 0.0000 10.9409 0.93145 10.900 10.2750 11.225 9.700 14.100 1.37610475 2.52950
## ---------------------------------------------------------------------------------------
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 374 0 0.00000 1920.5775 1092.95317 1773.000 1095.500 2606.2500 41.000 4795.000 0.423094 -0.49022
## age 374 0 0.00000 50.1569 10.24065 50.193 42.379 56.9993 26.278 76.709 0.068061 -0.66008
## bili 374 0 0.00000 3.2626 4.59139 1.300 0.700 3.4000 0.300 28.000 2.648590 7.39780
## chol 374 125 33.42246 370.5020 238.72656 309.000 252.000 395.0000 120.000 1775.000 3.477832 14.38135
## albumin 374 0 0.00000 3.4930 0.42153 3.520 3.240 3.7675 1.960 4.640 -0.410847 0.58386
## copper 374 100 26.73797 90.2080 80.73838 67.000 40.000 111.7500 4.000 588.000 2.704782 10.87987
## alk.phos 374 98 26.20321 1957.8348 2105.04905 1270.500 877.500 1963.7500 289.000 13862.400 3.102248 10.59178
## ast 374 98 26.20321 122.6301 57.91665 113.335 80.600 151.9000 26.350 457.250 1.515794 4.48689
## trig 374 127 33.95722 123.4656 66.78096 106.000 84.000 146.0000 33.000 598.000 2.673765 12.41800
## platelet 374 10 2.67380 260.0824 99.41838 252.500 190.000 319.0000 62.000 721.000 0.654158 0.89382
## protime 374 2 0.53476 10.7070 1.03053 10.600 10.000 11.1000 9.000 18.000 2.327509 10.84613
##
## p-values
## pNormal pNonNormal
## time 0.88032351 0.57591934
## age 0.00080217 0.00265366
## bili 0.57291443 0.02892490
## chol 0.84802992 0.94479917
## albumin 0.53603916 0.27292778
## copper 0.00001921 0.00001876
## alk.phos 0.57143514 0.94518752
## ast 0.94936505 0.71776531
## trig 0.39810994 0.10007135
## platelet 0.06788007 0.11288380
## protime 0.15131569 0.04169974
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 44 8 18.18182 1 21 58.33333 58.33333
## 2 15 41.66667 100.00000
##
## ascites 44 8 18.18182 0 33 91.66667 91.66667
## 1 3 8.33333 100.00000
##
## spiders 44 8 18.18182 0 32 88.88889 88.88889
## 1 4 11.11111 100.00000
##
## edema 44 0 0.00000 0 36 81.81818 81.81818
## 0.5 5 11.36364 93.18182
## 1 3 6.81818 100.00000
##
## stage 44 0 0.00000 1 3 6.81818 6.81818
## 2 8 18.18182 25.00000
## 3 16 36.36364 61.36364
## 4 17 38.63636 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 374 98 26.20321 1 137 49.63768 49.63768
## 2 139 50.36232 100.00000
##
## ascites 374 98 26.20321 0 255 92.39130 92.39130
## 1 21 7.60870 100.00000
##
## spiders 374 98 26.20321 0 190 68.84058 68.84058
## 1 86 31.15942 100.00000
##
## edema 374 0 0.00000 0 318 85.02674 85.02674
## 0.5 39 10.42781 95.45455
## 1 17 4.54545 100.00000
##
## stage 374 6 1.60428 1 18 4.89130 4.89130
## 2 84 22.82609 27.71739
## 3 139 37.77174 65.48913
## 4 127 34.51087 100.00000
##
##
## p-values
## pApprox pExact
## trt 0.42123 0.37743
## ascites 1.00000 0.74738
## spiders 0.02135 0.01094
## edema 0.77662 0.65149
## stage 0.83074 0.77658
## print method by default
print(catTable)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## format
print(catTable, format = "fp")
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
print(catTable, format = "f")
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 15 139 0.421
## ascites = 1 3 21 1.000
## spiders = 1 4 86 0.021
## edema 0.777
## 0 36 318
## 0.5 5 39
## 1 3 17
## stage 0.831
## 1 3 18
## 2 8 84
## 3 16 139
## 4 17 127
print(catTable, format = "p")
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 41.7 50.4 0.421
## ascites = 1 (%) 8.3 7.6 1.000
## spiders = 1 (%) 11.1 31.2 0.021
## edema (%) 0.777
## 0 81.8 85.0
## 0.5 11.4 10.4
## 1 6.8 4.5
## stage (%) 0.831
## 1 6.8 4.9
## 2 18.2 22.8
## 3 36.4 37.8
## 4 38.6 34.5
print(catTable, format = "pf")
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 % (freq) 41.7 (15) 50.4 (139) 0.421
## ascites = 1 % (freq) 8.3 (3) 7.6 (21) 1.000
## spiders = 1 % (freq) 11.1 (4) 31.2 (86) 0.021
## edema % (freq) 0.777
## 0 81.8 (36) 85.0 (318)
## 0.5 11.4 ( 5) 10.4 ( 39)
## 1 6.8 ( 3) 4.5 ( 17)
## stage % (freq) 0.831
## 1 6.8 ( 3) 4.9 ( 18)
## 2 18.2 ( 8) 22.8 ( 84)
## 3 36.4 (16) 37.8 (139)
## 4 38.6 (17) 34.5 (127)
## digits
print(catTable, digits = 5)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## exact
print(catTable, exact = TRUE)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.377 exact
## ascites = 1 (%) 3 (8.3) 21 (7.6) 0.747 exact
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.011 exact
## edema (%) 0.651 exact
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.777 exact
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## Partially exact
print(catTable, exact = exactVars)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 0.747 exact
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.651 exact
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## quote
print(catTable, quote = TRUE)
## "Stratified by sex"
## "" "m" "f" "p" "test"
## "n" "44" "374" "" ""
## "time (mean (sd))" "1894.02 (1213.03)" "1920.58 (1092.95)" " 0.880" ""
## "age (mean (sd))" " 55.71 (10.98)" " 50.16 (10.24)" " 0.001" ""
## "bili (mean (sd))" " 2.87 (2.32)" " 3.26 (4.59)" " 0.573" ""
## "chol (mean (sd))" " 362.46 (178.99)" " 370.50 (238.73)" " 0.848" ""
## "albumin (mean (sd))" " 3.54 (0.46)" " 3.49 (0.42)" " 0.536" ""
## "copper (mean (sd))" " 154.28 (100.67)" " 90.21 (80.74)" "<0.001" ""
## "alk.phos (mean (sd))" "2172.95 (2418.45)" "1957.83 (2105.05)" " 0.571" ""
## "ast (mean (sd))" " 121.99 (47.01)" " 122.63 (57.92)" " 0.949" ""
## "trig (mean (sd))" " 133.43 (52.17)" " 123.47 (66.78)" " 0.398" ""
## "platelet (mean (sd))" " 231.14 (85.23)" " 260.08 (99.42)" " 0.068" ""
## "protime (mean (sd))" " 10.94 (0.93)" " 10.71 (1.03)" " 0.151" ""
## "trt = 2 (%)" " 15 (41.7) " " 139 (50.4) " " 0.421" ""
## "ascites = 1 (%)" " 3 (8.3) " " 21 (7.6) " " 1.000" ""
## "spiders = 1 (%)" " 4 (11.1) " " 86 (31.2) " " 0.021" ""
## "edema (%)" " " " " " 0.777" ""
## " 0" " 36 (81.8) " " 318 (85.0) " "" ""
## " 0.5" " 5 (11.4) " " 39 (10.4) " "" ""
## " 1" " 3 ( 6.8) " " 17 ( 4.5) " "" ""
## "stage (%)" " " " " " 0.831" ""
## " 1" " 3 ( 6.8) " " 18 ( 4.9) " "" ""
## " 2" " 8 (18.2) " " 84 (22.8) " "" ""
## " 3" " 16 (36.4) " " 139 (37.8) " "" ""
## " 4" " 17 (38.6) " " 127 (34.5) " "" ""
## No test
print(catTable, test = TRUE)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## pDigits
print(catTable, pDigits = 5)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## showAllLevel
print(catTable, showAllLevels = TRUE)
## Stratified by sex
## level m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt (%) 1 21 (58.3) 137 (49.6) 0.421
## 2 15 (41.7) 139 (50.4)
## ascites (%) 0 33 (91.7) 255 (92.4) 1.000
## 1 3 ( 8.3) 21 ( 7.6)
## spiders (%) 0 32 (88.9) 190 (68.8) 0.021
## 1 4 (11.1) 86 (31.2)
## edema (%) 0 36 (81.8) 318 (85.0) 0.777
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 1 3 ( 6.8) 18 ( 4.9) 0.831
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## explain
print(catTable, explain = FALSE)
## Stratified by sex
## m f p test
## n 44 374
## time 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age 55.71 (10.98) 50.16 (10.24) 0.001
## bili 2.87 (2.32) 3.26 (4.59) 0.573
## chol 362.46 (178.99) 370.50 (238.73) 0.848
## albumin 3.54 (0.46) 3.49 (0.42) 0.536
## copper 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast 121.99 (47.01) 122.63 (57.92) 0.949
## trig 133.43 (52.17) 123.47 (66.78) 0.398
## platelet 231.14 (85.23) 260.08 (99.42) 0.068
## protime 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 15 (41.7) 139 (50.4) 0.421
## ascites = 1 3 (8.3) 21 (7.6) 1.000
## spiders = 1 4 (11.1) 86 (31.2) 0.021
## edema 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
## CrossTable
print(catTable, CrossTable = TRUE)
## Stratified by sex
## m f p test
## n 44 374
## time (mean (sd)) 1894.02 (1213.03) 1920.58 (1092.95) 0.880
## age (mean (sd)) 55.71 (10.98) 50.16 (10.24) 0.001
## bili (mean (sd)) 2.87 (2.32) 3.26 (4.59) 0.573
## chol (mean (sd)) 362.46 (178.99) 370.50 (238.73) 0.848
## albumin (mean (sd)) 3.54 (0.46) 3.49 (0.42) 0.536
## copper (mean (sd)) 154.28 (100.67) 90.21 (80.74) <0.001
## alk.phos (mean (sd)) 2172.95 (2418.45) 1957.83 (2105.05) 0.571
## ast (mean (sd)) 121.99 (47.01) 122.63 (57.92) 0.949
## trig (mean (sd)) 133.43 (52.17) 123.47 (66.78) 0.398
## platelet (mean (sd)) 231.14 (85.23) 260.08 (99.42) 0.068
## protime (mean (sd)) 10.94 (0.93) 10.71 (1.03) 0.151
## trt = 2 (%) 15 (41.7) 139 (50.4) 0.421
## ascites = 1 (%) 3 (8.3) 21 (7.6) 1.000
## spiders = 1 (%) 4 (11.1) 86 (31.2) 0.021
## edema (%) 0.777
## 0 36 (81.8) 318 (85.0)
## 0.5 5 (11.4) 39 (10.4)
## 1 3 ( 6.8) 17 ( 4.5)
## stage (%) 0.831
## 1 3 ( 6.8) 18 ( 4.9)
## 2 8 (18.2) 84 (22.8)
## 3 16 (36.4) 139 (37.8)
## 4 17 (38.6) 127 (34.5)
### Behaviors on correct data format (stratified, 3-group)
## Creation
catTable <- CreateTableOne(vars = vars, strata = strata, data = dataFrame)
## print method
catTable
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## summary method
summary(catTable)
##
## ### Summary of continuous variables ###
##
## status: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 232 0 0.0 2333 994.7 2186.5 1456.5 2980 691.0 4795 0.6 -0.6
## age 232 0 0.0 50 10.4 49.8 41.4 57 26.3 78 0.1 -0.6
## bili 232 0 0.0 2 1.9 0.9 0.6 2 0.3 14 3.5 14.5
## chol 232 80 34.5 327 165.8 292.0 245.2 360 120.0 1480 4.3 24.8
## albumin 232 0 0.0 4 0.4 3.6 3.4 4 2.4 5 -0.2 0.4
## copper 232 65 28.0 67 57.1 52.0 33.5 78 4.0 412 3.1 13.5
## alk.phos 232 64 27.6 1578 1633.1 1107.5 794.0 1641 289.0 11047 3.6 14.7
## ast 232 64 27.6 107 52.8 94.5 71.3 129 26.4 457 2.4 11.2
## trig 232 81 34.9 112 48.3 104.0 80.0 134 44.0 382 1.7 5.9
## platelet 232 5 2.2 261 88.6 256.0 203.5 313 79.0 539 0.4 0.2
## protime 232 1 0.4 10 0.9 10.4 9.9 11 9.0 18 4.2 29.7
## ---------------------------------------------------------------------------------------
## status: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 25 0 0 1546 753.1 1435 901 2241 533.0 3092 0.60 -0.7
## age 25 0 0 42 6.3 41 36 47 33.0 56 0.47 -0.6
## bili 25 0 0 4 3.6 3 1 4 0.5 18 2.95 10.9
## chol 25 7 28 440 335.5 344 312 446 201.0 1712 3.55 13.8
## albumin 25 0 0 3 0.5 4 3 4 2.3 4 -0.53 0.3
## copper 25 6 24 124 100.1 102 69 130 32.0 444 2.25 5.6
## alk.phos 25 6 24 1535 837.7 1345 1028 1778 637.0 3681 1.47 1.8
## ast 25 6 24 130 36.9 127 114 151 54.2 205 0.09 0.3
## trig 25 7 28 134 70.5 124 86 146 33.0 322 1.25 1.8
## platelet 25 0 0 310 102.7 304 248 372 76.0 517 -0.11 0.2
## protime 25 0 0 10 0.5 10 10 11 9.6 11 0.52 -0.7
## ---------------------------------------------------------------------------------------
## status: 2
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 161 0 0.0 1377 1049.2 1083 597 2071 41.0 4191 0.83 -0.2
## age 161 0 0.0 54 9.8 53 47 61 30.9 77 -0.01 -0.6
## bili 161 0 0.0 6 5.8 3 1 7 0.3 28 1.68 2.4
## chol 161 47 29.2 416 275.0 339 258 454 127.0 1775 2.58 8.1
## albumin 161 0 0.0 3 0.5 3 3 4 2.0 5 -0.33 0.2
## copper 161 37 23.0 135 98.5 111 64 199 13.0 588 1.84 5.5
## alk.phos 161 36 22.4 2594 2677.1 1664 1029 2468 516.0 13862 2.30 5.1
## ast 161 36 22.4 142 58.4 135 99 177 28.4 338 0.81 1.0
## trig 161 48 29.8 140 79.3 122 91 171 49.0 598 2.51 10.3
## platelet 161 6 3.7 242 107.9 224 158 312 62.0 721 1.01 1.8
## protime 161 1 0.6 11 1.0 11 10 12 9.0 15 0.78 0.9
##
## p-values
## pNormal pNonNormal
## time 2.170e-18 1.070e-18
## age 4.513e-09 7.523e-09
## bili 4.006e-19 4.088e-26
## chol 3.118e-03 3.588e-03
## albumin 4.024e-07 2.875e-06
## copper 5.999e-12 2.935e-14
## alk.phos 1.655e-04 1.139e-05
## ast 7.554e-07 2.198e-08
## trig 1.401e-03 5.535e-03
## platelet 4.024e-03 8.025e-04
## protime 6.961e-13 1.987e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## var n miss p.miss level freq percent cum.percent
## trt 232 64 27.6 1 83 49.4 49.4
## 2 85 50.6 100.0
##
## ascites 232 64 27.6 0 167 99.4 99.4
## 1 1 0.6 100.0
##
## spiders 232 64 27.6 0 135 80.4 80.4
## 1 33 19.6 100.0
##
## edema 232 0 0.0 0 216 93.1 93.1
## 0.5 15 6.5 99.6
## 1 1 0.4 100.0
##
## stage 232 2 0.9 1 19 8.3 8.3
## 2 64 27.8 36.1
## 3 97 42.2 78.3
## 4 50 21.7 100.0
##
## ---------------------------------------------------------------------------------------
## status: 1
## var n miss p.miss level freq percent cum.percent
## trt 25 6 24.0 1 10 52.6 52.6
## 2 9 47.4 100.0
##
## ascites 25 6 24.0 0 19 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 25 6 24.0 0 14 73.7 73.7
## 1 5 26.3 100.0
##
## edema 25 0 0.0 0 22 88.0 88.0
## 0.5 3 12.0 100.0
## 1 0 0.0 100.0
##
## stage 25 0 0.0 1 0 0.0 0.0
## 2 5 20.0 20.0
## 3 10 40.0 60.0
## 4 10 40.0 100.0
##
## ---------------------------------------------------------------------------------------
## status: 2
## var n miss p.miss level freq percent cum.percent
## trt 161 36 22.4 1 65 52.0 52.0
## 2 60 48.0 100.0
##
## ascites 161 36 22.4 0 102 81.6 81.6
## 1 23 18.4 100.0
##
## spiders 161 36 22.4 0 73 58.4 58.4
## 1 52 41.6 100.0
##
## edema 161 0 0.0 0 116 72.0 72.0
## 0.5 26 16.1 88.2
## 1 19 11.8 100.0
##
## stage 161 4 2.5 1 2 1.3 1.3
## 2 23 14.6 15.9
## 3 48 30.6 46.5
## 4 84 53.5 100.0
##
##
## p-values
## pApprox pExact
## trt 0.89350974940 0.88422188365
## ascites 0.00000004847 0.00000001915
## spiders 0.00021408606 0.00019418862
## edema 0.00000003438 0.00000001955
## stage 0.00000001118 NA
## digits
summary(catTable, digits = 5)
##
## ### Summary of continuous variables ###
##
## status: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 232 0 0.00000 2333.1552 994.65895 2186.500 1456.500 2979.5000 691.000 4795.000 0.59056 -0.58655
## age 232 0 0.00000 49.5103 10.42672 49.817 41.384 56.7577 26.278 78.439 0.10065 -0.57612
## bili 232 0 0.00000 1.5759 1.91026 0.900 0.600 1.6000 0.300 13.600 3.49318 14.50073
## chol 232 80 34.48276 326.5395 165.79729 292.000 245.250 360.0000 120.000 1480.000 4.29636 24.78537
## albumin 232 0 0.00000 3.5935 0.36041 3.600 3.360 3.8225 2.380 4.640 -0.21336 0.43831
## copper 232 65 28.01724 66.6108 57.05418 52.000 33.500 77.5000 4.000 412.000 3.06883 13.51984
## alk.phos 232 64 27.58621 1578.1274 1633.07092 1107.500 794.000 1641.0000 289.000 11046.600 3.59059 14.68030
## ast 232 64 27.58621 107.2860 52.79321 94.550 71.300 128.9875 26.350 457.250 2.38181 11.21994
## trig 232 81 34.91379 111.7881 48.27775 104.000 80.000 133.5000 44.000 382.000 1.71753 5.91846
## platelet 232 5 2.15517 261.1586 88.60787 256.000 203.500 313.0000 79.000 539.000 0.40679 0.21168
## protime 232 1 0.43103 10.4541 0.92458 10.400 9.900 10.8000 9.000 18.000 4.21195 29.69337
## ---------------------------------------------------------------------------------------
## status: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 25 0 0 1546.2000 753.07425 1435.000 901.000 2241.000 533.00 3092.000 0.596113 -0.69276
## age 25 0 0 41.6934 6.33435 40.999 36.493 47.181 32.95 55.986 0.470499 -0.58282
## bili 25 0 0 3.5560 3.59619 3.100 1.300 3.500 0.50 18.000 2.950805 10.88744
## chol 25 7 28 439.5000 335.53666 343.500 311.500 445.500 201.00 1712.000 3.553207 13.79115
## albumin 25 0 0 3.4876 0.45599 3.530 3.180 3.770 2.31 4.200 -0.530839 0.30509
## copper 25 6 24 124.0000 100.07830 102.000 69.000 129.500 32.00 444.000 2.250350 5.61963
## alk.phos 25 6 24 1535.2105 837.74808 1345.000 1028.500 1777.500 637.00 3681.000 1.469519 1.83947
## ast 25 6 24 130.1158 36.94593 127.000 113.925 151.125 54.25 205.000 0.088453 0.31448
## trig 25 7 28 133.9444 70.54700 124.000 85.750 145.750 33.00 322.000 1.248931 1.75650
## platelet 25 0 0 309.6000 102.65314 304.000 248.000 372.000 76.00 517.000 -0.112316 0.20185
## protime 25 0 0 10.3600 0.53697 10.300 10.000 10.700 9.60 11.400 0.516009 -0.73202
## ---------------------------------------------------------------------------------------
## status: 2
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 161 0 0.00000 1376.9317 1049.22797 1083.000 597.000 2071.000 41.000 4191.000 0.832780 -0.18926
## age 161 0 0.00000 53.9207 9.81423 53.498 46.628 61.295 30.864 76.709 -0.013216 -0.56233
## bili 161 0 0.00000 5.5391 5.83710 3.200 1.400 7.100 0.300 28.000 1.683878 2.35585
## chol 161 47 29.19255 415.7544 275.03076 339.000 257.500 454.000 127.000 1775.000 2.575250 8.11359
## albumin 161 0 0.00000 3.3606 0.46875 3.400 3.080 3.650 1.960 4.520 -0.328598 0.18383
## copper 161 37 22.98137 135.4113 98.49890 111.000 63.500 199.250 13.000 588.000 1.840411 5.50281
## alk.phos 161 36 22.36025 2594.3536 2677.10859 1664.000 1029.000 2468.000 516.000 13862.400 2.300147 5.07611
## ast 161 36 22.36025 141.9307 58.37952 134.850 99.330 176.700 28.380 338.000 0.807649 0.97760
## trig 161 48 29.81366 140.4867 79.25818 122.000 91.000 171.000 49.000 598.000 2.505344 10.28687
## platelet 161 6 3.72671 242.4903 107.87615 224.000 158.000 312.500 62.000 721.000 1.012383 1.80442
## protime 161 1 0.62112 11.1906 1.04904 11.000 10.475 11.800 9.000 15.200 0.776316 0.85574
##
## p-values
## pNormal pNonNormal
## time 2.170e-18 1.070e-18
## age 4.513e-09 7.523e-09
## bili 4.006e-19 4.088e-26
## chol 3.118e-03 3.588e-03
## albumin 4.024e-07 2.875e-06
## copper 5.999e-12 2.935e-14
## alk.phos 1.655e-04 1.139e-05
## ast 7.554e-07 2.198e-08
## trig 1.401e-03 5.535e-03
## platelet 4.024e-03 8.025e-04
## protime 6.961e-13 1.987e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## var n miss p.miss level freq percent cum.percent
## trt 232 64 27.58621 1 83 49.40476 49.40476
## 2 85 50.59524 100.00000
##
## ascites 232 64 27.58621 0 167 99.40476 99.40476
## 1 1 0.59524 100.00000
##
## spiders 232 64 27.58621 0 135 80.35714 80.35714
## 1 33 19.64286 100.00000
##
## edema 232 0 0.00000 0 216 93.10345 93.10345
## 0.5 15 6.46552 99.56897
## 1 1 0.43103 100.00000
##
## stage 232 2 0.86207 1 19 8.26087 8.26087
## 2 64 27.82609 36.08696
## 3 97 42.17391 78.26087
## 4 50 21.73913 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 1
## var n miss p.miss level freq percent cum.percent
## trt 25 6 24.00000 1 10 52.63158 52.63158
## 2 9 47.36842 100.00000
##
## ascites 25 6 24.00000 0 19 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 25 6 24.00000 0 14 73.68421 73.68421
## 1 5 26.31579 100.00000
##
## edema 25 0 0.00000 0 22 88.00000 88.00000
## 0.5 3 12.00000 100.00000
## 1 0 0.00000 100.00000
##
## stage 25 0 0.00000 1 0 0.00000 0.00000
## 2 5 20.00000 20.00000
## 3 10 40.00000 60.00000
## 4 10 40.00000 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 2
## var n miss p.miss level freq percent cum.percent
## trt 161 36 22.36025 1 65 52.00000 52.00000
## 2 60 48.00000 100.00000
##
## ascites 161 36 22.36025 0 102 81.60000 81.60000
## 1 23 18.40000 100.00000
##
## spiders 161 36 22.36025 0 73 58.40000 58.40000
## 1 52 41.60000 100.00000
##
## edema 161 0 0.00000 0 116 72.04969 72.04969
## 0.5 26 16.14907 88.19876
## 1 19 11.80124 100.00000
##
## stage 161 4 2.48447 1 2 1.27389 1.27389
## 2 23 14.64968 15.92357
## 3 48 30.57325 46.49682
## 4 84 53.50318 100.00000
##
##
## p-values
## pApprox pExact
## trt 0.89350974940 0.88422188365
## ascites 0.00000004847 0.00000001915
## spiders 0.00021408606 0.00019418862
## edema 0.00000003438 0.00000001955
## stage 0.00000001118 NA
## print method by default
print(catTable)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## format
print(catTable, format = "fp")
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
print(catTable, format = "f")
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 85 9 60 0.894
## ascites = 1 1 0 23 <0.001
## spiders = 1 33 5 52 <0.001
## edema <0.001
## 0 216 22 116
## 0.5 15 3 26
## 1 1 0 19
## stage <0.001
## 1 19 0 2
## 2 64 5 23
## 3 97 10 48
## 4 50 10 84
print(catTable, format = "p")
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 50.6 47.4 48.0 0.894
## ascites = 1 (%) 0.6 0.0 18.4 <0.001
## spiders = 1 (%) 19.6 26.3 41.6 <0.001
## edema (%) <0.001
## 0 93.1 88.0 72.0
## 0.5 6.5 12.0 16.1
## 1 0.4 0.0 11.8
## stage (%) <0.001
## 1 8.3 0.0 1.3
## 2 27.8 20.0 14.6
## 3 42.2 40.0 30.6
## 4 21.7 40.0 53.5
print(catTable, format = "pf")
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 % (freq) 50.6 (85) 47.4 (9) 48.0 (60) 0.894
## ascites = 1 % (freq) 0.6 (1) 0.0 (0) 18.4 (23) <0.001
## spiders = 1 % (freq) 19.6 (33) 26.3 (5) 41.6 (52) <0.001
## edema % (freq) <0.001
## 0 93.1 (216) 88.0 (22) 72.0 (116)
## 0.5 6.5 ( 15) 12.0 ( 3) 16.1 ( 26)
## 1 0.4 ( 1) 0.0 ( 0) 11.8 ( 19)
## stage % (freq) <0.001
## 1 8.3 (19) 0.0 ( 0) 1.3 ( 2)
## 2 27.8 (64) 20.0 ( 5) 14.6 (23)
## 3 42.2 (97) 40.0 (10) 30.6 (48)
## 4 21.7 (50) 40.0 (10) 53.5 (84)
## digits
print(catTable, digits = 5)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## exact
print(catTable, exact = TRUE)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.884 exact
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001 exact
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001 exact
## edema (%) <0.001 exact
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) NA exact
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## Partially exact
print(catTable, exact = exactVars)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001 exact
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001 exact
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## quote
print(catTable, quote = TRUE)
## "Stratified by status"
## "" "0" "1" "2" "p" "test"
## "n" "232" "25" "161" "" ""
## "time (mean (sd))" "2333.16 (994.66)" "1546.20 (753.07)" "1376.93 (1049.23)" "<0.001" ""
## "age (mean (sd))" " 49.51 (10.43)" " 41.69 (6.33)" " 53.92 (9.81)" "<0.001" ""
## "bili (mean (sd))" " 1.58 (1.91)" " 3.56 (3.60)" " 5.54 (5.84)" "<0.001" ""
## "chol (mean (sd))" " 326.54 (165.80)" " 439.50 (335.54)" " 415.75 (275.03)" " 0.003" ""
## "albumin (mean (sd))" " 3.59 (0.36)" " 3.49 (0.46)" " 3.36 (0.47)" "<0.001" ""
## "copper (mean (sd))" " 66.61 (57.05)" " 124.00 (100.08)" " 135.41 (98.50)" "<0.001" ""
## "alk.phos (mean (sd))" "1578.13 (1633.07)" "1535.21 (837.75)" "2594.35 (2677.11)" "<0.001" ""
## "ast (mean (sd))" " 107.29 (52.79)" " 130.12 (36.95)" " 141.93 (58.38)" "<0.001" ""
## "trig (mean (sd))" " 111.79 (48.28)" " 133.94 (70.55)" " 140.49 (79.26)" " 0.001" ""
## "platelet (mean (sd))" " 261.16 (88.61)" " 309.60 (102.65)" " 242.49 (107.88)" " 0.004" ""
## "protime (mean (sd))" " 10.45 (0.92)" " 10.36 (0.54)" " 11.19 (1.05)" "<0.001" ""
## "trt = 2 (%)" " 85 (50.6) " " 9 (47.4) " " 60 (48.0) " " 0.894" ""
## "ascites = 1 (%)" " 1 (0.6) " " 0 (0.0) " " 23 (18.4) " "<0.001" ""
## "spiders = 1 (%)" " 33 (19.6) " " 5 (26.3) " " 52 (41.6) " "<0.001" ""
## "edema (%)" " " " " " " "<0.001" ""
## " 0" " 216 (93.1) " " 22 (88.0) " " 116 (72.0) " "" ""
## " 0.5" " 15 ( 6.5) " " 3 (12.0) " " 26 (16.1) " "" ""
## " 1" " 1 ( 0.4) " " 0 ( 0.0) " " 19 (11.8) " "" ""
## "stage (%)" " " " " " " "<0.001" ""
## " 1" " 19 ( 8.3) " " 0 ( 0.0) " " 2 ( 1.3) " "" ""
## " 2" " 64 (27.8) " " 5 (20.0) " " 23 (14.6) " "" ""
## " 3" " 97 (42.2) " " 10 (40.0) " " 48 (30.6) " "" ""
## " 4" " 50 (21.7) " " 10 (40.0) " " 84 (53.5) " "" ""
## No test
print(catTable, test = TRUE)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## pDigits
print(catTable, pDigits = 5)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## showAllLevel
print(catTable, showAllLevels = TRUE)
## Stratified by status
## level 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt (%) 1 83 (49.4) 10 (52.6) 65 (52.0) 0.894
## 2 85 (50.6) 9 (47.4) 60 (48.0)
## ascites (%) 0 167 (99.4) 19 (100.0) 102 (81.6) <0.001
## 1 1 ( 0.6) 0 ( 0.0) 23 (18.4)
## spiders (%) 0 135 (80.4) 14 (73.7) 73 (58.4) <0.001
## 1 33 (19.6) 5 (26.3) 52 (41.6)
## edema (%) 0 216 (93.1) 22 (88.0) 116 (72.0) <0.001
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3) <0.001
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## explain
print(catTable, explain = FALSE)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## CrossTable
print(catTable, CrossTable = TRUE)
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
### Behaviors on correct data format (stratified, 2-variable)
## Creation
catTable <- CreateTableOne(vars = vars, strata = strataTwoVars, data = dataFrame)
## print method
catTable
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## summary method
summary(catTable)
##
## ### Summary of continuous variables ###
##
## status: 0
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 17 0 0 2462 1217.3 1899 1419.0 3445 1129.0 4459 0.58 -1.28
## age 17 0 0 56 10.6 53 49.1 61 41.0 78 0.82 -0.03
## bili 17 0 0 3 2.6 2 0.9 3 0.6 9 1.35 0.41
## chol 17 6 35 368 235.0 252 242.5 403 216.0 1000 2.30 5.61
## albumin 17 0 0 3 0.4 4 3.1 4 2.4 4 -0.94 1.18
## copper 17 6 35 129 113.1 84 57.0 168 25.0 380 1.38 1.25
## alk.phos 17 6 35 2482 3052.9 1098 913.0 2311 601.0 10397 2.17 4.50
## ast 17 6 35 112 50.9 108 62.8 143 56.8 193 0.45 -1.14
## trig 17 6 35 132 33.7 128 112.5 154 83.0 188 0.27 -0.75
## platelet 17 1 6 213 72.2 212 170.5 267 92.0 336 -0.07 -0.72
## protime 17 0 0 11 0.8 11 10.6 11 9.8 13 1.08 1.92
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0 1148 785.8 877 705 1455 533 2033 1.4 NaN
## age 3 0 0 42 12.0 35 35 46 35 56 1.7 NaN
## bili 3 0 0 2 1.2 2 2 3 1 4 -0.1 NaN
## chol 3 0 0 415 201.3 325 300 486 275 646 1.6 NaN
## albumin 3 0 0 4 0.3 4 4 4 3 4 -1.2 NaN
## copper 3 0 0 215 198.0 102 101 273 100 444 1.7 NaN
## alk.phos 3 0 0 921 196.5 855 810 998 766 1142 1.3 NaN
## ast 3 0 0 111 31.0 127 101 129 75 130 -1.7 NaN
## trig 3 0 0 165 64.6 194 142 202 91 210 -1.6 NaN
## platelet 3 0 0 289 65.2 306 262 325 217 344 -1.1 NaN
## protime 3 0 0 11 0.5 11 10 11 10 11 1.1 NaN
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 24 0 0 1585 1120.5 1257 867 1906 140.0 4191 1.11 0.5
## age 24 0 0 57 10.3 58 51 67 33.5 72 -0.40 -0.6
## bili 24 0 0 3 2.2 2 2 4 0.8 10 1.59 2.0
## chol 24 3 12 352 149.2 331 247 426 151.0 660 0.52 -0.4
## albumin 24 0 0 4 0.5 4 3 4 2.3 4 -0.95 0.8
## copper 24 2 8 159 78.6 165 97 215 13.0 290 -0.11 -1.0
## alk.phos 24 2 8 2189 2243.2 1452 974 2387 516.0 10165 2.55 7.3
## ast 24 2 8 128 47.4 125 89 170 46.5 222 0.31 -0.7
## trig 24 3 12 130 59.0 122 91 155 49.0 242 0.59 -0.7
## platelet 24 0 0 236 93.9 226 155 328 70.0 394 0.01 -1.2
## protime 24 0 0 11 1.1 11 10 11 9.7 14 1.39 2.3
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 215 0 0.0 2323 977.6 2195.0 1469.0 2918 691.0 4795 0.58 -0.5
## age 215 0 0.0 49 10.3 49.0 40.9 57 26.3 75 0.03 -0.8
## bili 215 0 0.0 1 1.8 0.9 0.6 1 0.3 14 3.91 18.6
## chol 215 74 34.4 323 159.9 294.0 246.0 360 120.0 1480 4.68 29.8
## albumin 215 0 0.0 4 0.4 3.6 3.4 4 2.5 5 -0.10 0.2
## copper 215 59 27.4 62 48.7 51.5 33.0 75 4.0 412 3.15 17.3
## alk.phos 215 58 27.0 1515 1481.8 1110.0 794.0 1637 289.0 11047 3.75 16.8
## ast 215 58 27.0 107 53.1 93.0 72.8 129 26.4 457 2.50 11.9
## trig 215 75 34.9 110 49.0 101.0 76.8 133 44.0 382 1.82 6.3
## platelet 215 4 1.9 265 88.8 256.0 209.0 318 79.0 539 0.40 0.2
## protime 215 1 0.5 10 0.9 10.3 9.9 11 9.0 18 4.53 32.8
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 22 0 0 1601 750.7 1441 1033 2260 617.0 3092 0.608 -0.73
## age 22 0 0 42 5.7 41 37 47 33.0 52 0.111 -1.03
## bili 22 0 0 4 3.8 3 1 4 0.5 18 2.770 9.54
## chol 22 7 32 444 361.6 348 313 441 201.0 1712 3.484 12.87
## albumin 22 0 0 3 0.5 4 3 4 2.3 4 -0.400 0.20
## copper 22 6 27 107 69.3 98 58 126 32.0 308 1.684 3.93
## alk.phos 22 6 27 1650 864.5 1407 1132 1932 637.0 3681 1.279 1.26
## ast 22 6 27 134 37.7 124 114 153 54.2 205 0.009 0.35
## trig 22 7 32 128 72.1 118 81 142 33.0 322 1.629 3.16
## platelet 22 0 0 312 107.6 301 252 384 76.0 517 -0.167 0.05
## protime 22 0 0 10 0.5 10 10 11 9.6 11 0.640 -0.56
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 137 0 0.0 1341 1036.3 1037 549 2071 41.0 3853 0.78 -0.4
## age 137 0 0.0 53 9.6 53 46 61 30.9 77 0.03 -0.5
## bili 137 0 0.0 6 6.2 3 1 7 0.3 28 1.50 1.6
## chol 137 44 32.1 430 294.8 344 260 468 127.0 1775 2.45 6.9
## albumin 137 0 0.0 3 0.5 3 3 4 2.0 5 -0.27 0.4
## copper 137 35 25.5 130 101.9 102 58 173 14.0 588 2.10 6.4
## alk.phos 137 34 24.8 2681 2762.9 1787 1057 2562 559.0 13862 2.26 4.8
## ast 137 34 24.8 145 60.3 137 103 177 28.4 338 0.81 0.9
## trig 137 45 32.8 143 83.3 121 92 171 50.0 598 2.58 10.1
## platelet 137 6 4.4 244 110.5 224 160 304 62.0 721 1.11 2.0
## protime 137 1 0.7 11 1.0 11 11 12 9.0 15 0.69 0.8
##
## p-values
## pNormal pNonNormal
## time 1.891e-16 1.128e-16
## age 2.380e-09 1.699e-08
## bili 2.610e-19 1.499e-24
## chol 1.615e-02 4.032e-02
## albumin 2.891e-07 1.164e-06
## copper 6.640e-13 3.932e-14
## alk.phos 8.635e-04 7.643e-05
## ast 1.309e-05 6.230e-07
## trig 7.392e-03 7.804e-03
## platelet 8.655e-03 2.246e-03
## protime 3.480e-12 1.221e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 17 6 35.3 1 4 36.4 36.4
## 2 7 63.6 100.0
##
## ascites 17 6 35.3 0 10 90.9 90.9
## 1 1 9.1 100.0
##
## spiders 17 6 35.3 0 9 81.8 81.8
## 1 2 18.2 100.0
##
## edema 17 0 0.0 0 16 94.1 94.1
## 0.5 1 5.9 100.0
## 1 0 0.0 100.0
##
## stage 17 0 0.0 1 2 11.8 11.8
## 2 3 17.6 29.4
## 3 5 29.4 58.8
## 4 7 41.2 100.0
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.0 1 3 100.0 100.0
## 2 0 0.0 100.0
##
## ascites 3 0 0.0 0 3 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 3 0 0.0 0 3 100.0 100.0
## 1 0 0.0 100.0
##
## edema 3 0 0.0 0 3 100.0 100.0
## 0.5 0 0.0 100.0
## 1 0 0.0 100.0
##
## stage 3 0 0.0 1 0 0.0 0.0
## 2 0 0.0 0.0
## 3 2 66.7 66.7
## 4 1 33.3 100.0
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 24 2 8.3 1 14 63.6 63.6
## 2 8 36.4 100.0
##
## ascites 24 2 8.3 0 20 90.9 90.9
## 1 2 9.1 100.0
##
## spiders 24 2 8.3 0 20 90.9 90.9
## 1 2 9.1 100.0
##
## edema 24 0 0.0 0 17 70.8 70.8
## 0.5 4 16.7 87.5
## 1 3 12.5 100.0
##
## stage 24 0 0.0 1 1 4.2 4.2
## 2 5 20.8 25.0
## 3 9 37.5 62.5
## 4 9 37.5 100.0
##
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 215 58 27.0 1 79 50.3 50.3
## 2 78 49.7 100.0
##
## ascites 215 58 27.0 0 157 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 215 58 27.0 0 126 80.3 80.3
## 1 31 19.7 100.0
##
## edema 215 0 0.0 0 200 93.0 93.0
## 0.5 14 6.5 99.5
## 1 1 0.5 100.0
##
## stage 215 2 0.9 1 17 8.0 8.0
## 2 61 28.6 36.6
## 3 92 43.2 79.8
## 4 43 20.2 100.0
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 22 6 27.3 1 7 43.8 43.8
## 2 9 56.2 100.0
##
## ascites 22 6 27.3 0 16 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 22 6 27.3 0 11 68.8 68.8
## 1 5 31.2 100.0
##
## edema 22 0 0.0 0 19 86.4 86.4
## 0.5 3 13.6 100.0
## 1 0 0.0 100.0
##
## stage 22 0 0.0 1 0 0.0 0.0
## 2 5 22.7 22.7
## 3 8 36.4 59.1
## 4 9 40.9 100.0
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 137 34 24.8 1 51 49.5 49.5
## 2 52 50.5 100.0
##
## ascites 137 34 24.8 0 82 79.6 79.6
## 1 21 20.4 100.0
##
## spiders 137 34 24.8 0 53 51.5 51.5
## 1 50 48.5 100.0
##
## edema 137 0 0.0 0 99 72.3 72.3
## 0.5 22 16.1 88.3
## 1 16 11.7 100.0
##
## stage 137 4 2.9 1 1 0.8 0.8
## 2 18 13.5 14.3
## 3 39 29.3 43.6
## 4 75 56.4 100.0
##
##
## p-values
## pApprox pExact
## trt 0.3396357021 0.38716295778
## ascites 0.0000003538 0.00000003965
## spiders 0.0000063333 0.00000475377
## edema 0.0000109942 NA
## stage 0.0000008605 NA
## digits
summary(catTable, digits = 5)
##
## ### Summary of continuous variables ###
##
## status: 0
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 17 0 0.0000 2462.1765 1217.32721 1899.00 1419.000 3445.000 1129.000 4459.000 0.580553 -1.275652
## age 17 0 0.0000 55.6860 10.64563 52.89 49.136 60.999 40.999 78.439 0.817549 -0.029683
## bili 17 0 0.0000 2.6294 2.61576 1.70 0.900 3.000 0.600 8.600 1.345458 0.408840
## chol 17 6 35.2941 367.9091 234.98572 252.00 242.500 403.000 216.000 1000.000 2.303585 5.609269
## albumin 17 0 0.0000 3.4718 0.42631 3.59 3.150 3.730 2.380 4.080 -0.937381 1.179027
## copper 17 6 35.2941 128.8182 113.07238 84.00 57.000 168.000 25.000 380.000 1.380101 1.250490
## alk.phos 17 6 35.2941 2482.2545 3052.93587 1098.00 913.000 2311.000 601.000 10396.800 2.174870 4.499362
## ast 17 6 35.2941 112.2773 50.94183 108.50 62.775 142.550 56.760 193.000 0.446108 -1.139098
## trig 17 6 35.2941 131.8182 33.72779 128.00 112.500 153.500 83.000 188.000 0.274446 -0.745906
## platelet 17 1 5.8824 213.4375 72.17291 212.50 170.500 267.000 92.000 336.000 -0.066326 -0.721429
## protime 17 0 0.0000 10.9412 0.79926 10.90 10.600 11.200 9.800 13.000 1.076701 1.924353
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0 1147.6667 785.77690 877.000 705.000 1455.000 533.000 2033.000 1.36614 NaN
## age 3 0 0 42.1629 11.97184 35.351 35.251 45.669 35.151 55.986 1.73151 NaN
## bili 3 0 0 2.3667 1.15036 2.400 1.800 2.950 1.200 3.500 -0.13028 NaN
## chol 3 0 0 415.3333 201.32147 325.000 300.000 485.500 275.000 646.000 1.61263 NaN
## albumin 3 0 0 3.7467 0.28431 3.830 3.630 3.905 3.430 3.980 -1.20566 NaN
## copper 3 0 0 215.3333 198.03367 102.000 101.000 273.000 100.000 444.000 1.73185 NaN
## alk.phos 3 0 0 921.0000 196.49682 855.000 810.500 998.500 766.000 1142.000 1.34095 NaN
## ast 3 0 0 110.7333 30.98731 127.000 101.000 128.600 75.000 130.200 -1.71129 NaN
## trig 3 0 0 165.0000 64.58328 194.000 142.500 202.000 91.000 210.000 -1.61322 NaN
## platelet 3 0 0 289.0000 65.18435 306.000 261.500 325.000 217.000 344.000 -1.09377 NaN
## protime 3 0 0 10.7333 0.51316 10.600 10.450 10.950 10.300 11.300 1.09029 NaN
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 24 0 0.0000 1584.8750 1120.46063 1257.000 867.2500 1906.0000 140.000 4191.000 1.111794 0.54917
## age 24 0 0.0000 57.4217 10.34449 57.587 51.0726 67.4517 33.476 71.893 -0.402994 -0.57012
## bili 24 0 0.0000 3.0958 2.24818 2.300 1.5750 3.6250 0.800 9.500 1.585959 1.97358
## chol 24 3 12.5000 352.0476 149.17757 331.000 247.0000 426.0000 151.000 660.000 0.515581 -0.44479
## albumin 24 0 0.0000 3.5533 0.49715 3.665 3.3275 3.9325 2.270 4.300 -0.946851 0.80931
## copper 24 2 8.3333 158.6818 78.57201 165.000 96.7500 215.2500 13.000 290.000 -0.113305 -0.99399
## alk.phos 24 2 8.3333 2189.0182 2243.18335 1452.000 973.7500 2387.0000 516.000 10165.000 2.551074 7.31597
## ast 24 2 8.3333 128.3823 47.39408 124.775 88.5250 170.5000 46.500 221.880 0.313131 -0.73906
## trig 24 3 12.5000 129.7619 58.95499 122.000 91.0000 155.0000 49.000 242.000 0.586741 -0.68788
## platelet 24 0 0.0000 235.7083 93.91785 225.500 154.7500 328.0000 70.000 394.000 0.012464 -1.16878
## protime 24 0 0.0000 10.9667 1.07164 10.950 10.1750 11.3250 9.700 14.100 1.390936 2.25229
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 215 0 0.00000 2322.9535 977.60792 2195.000 1469.000 2917.500 691.000 4795.000 0.582318 -0.53007
## age 215 0 0.00000 49.0220 10.27669 48.999 40.895 56.600 26.278 75.012 0.033629 -0.78458
## bili 215 0 0.00000 1.4926 1.82545 0.900 0.600 1.450 0.300 13.600 3.914967 18.57538
## chol 215 74 34.41860 323.3121 159.87321 294.000 246.000 360.000 120.000 1480.000 4.678667 29.78599
## albumin 215 0 0.00000 3.6031 0.35405 3.600 3.370 3.825 2.480 4.640 -0.100353 0.23378
## copper 215 59 27.44186 62.2244 48.65528 51.500 33.000 75.250 4.000 412.000 3.148308 17.31419
## alk.phos 215 58 26.97674 1514.7809 1481.83371 1110.000 794.000 1637.000 289.000 11046.600 3.748137 16.81930
## ast 215 58 26.97674 106.9362 53.06053 93.000 72.850 128.650 26.350 457.250 2.495647 11.91733
## trig 215 75 34.88372 110.2143 48.98066 101.000 76.750 133.000 44.000 382.000 1.821197 6.26465
## platelet 215 4 1.86047 264.7773 88.83030 256.000 209.000 317.500 79.000 539.000 0.402233 0.19191
## protime 215 1 0.46512 10.4154 0.92447 10.300 9.900 10.700 9.000 18.000 4.531750 32.78717
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 22 0 0.000 1600.5455 750.69959 1441.000 1033.250 2260.5000 617.00 3092.0 0.6082827 -0.732399
## age 22 0 0.000 41.6294 5.67188 41.076 37.276 46.9815 32.95 52.0 0.1106357 -1.025452
## bili 22 0 0.000 3.7182 3.79795 3.150 1.375 4.1750 0.50 18.0 2.7702682 9.541192
## chol 22 7 31.818 444.3333 361.62128 348.000 313.000 441.0000 201.00 1712.0 3.4838018 12.874590
## albumin 22 0 0.000 3.4523 0.46801 3.520 3.135 3.7575 2.31 4.2 -0.3996645 0.202256
## copper 22 6 27.273 106.8750 69.34443 98.000 58.500 126.2500 32.00 308.0 1.6840068 3.926654
## alk.phos 22 6 27.273 1650.3750 864.54619 1407.000 1131.750 1932.0000 637.00 3681.0 1.2790073 1.261894
## ast 22 6 27.273 133.7500 37.69283 124.000 114.312 153.4500 54.25 205.0 0.0087982 0.354826
## trig 22 7 31.818 127.7333 72.10753 118.000 81.000 142.0000 33.00 322.0 1.6286698 3.156473
## platelet 22 0 0.000 312.4091 107.56157 301.000 252.000 384.0000 76.00 517.0 -0.1674101 0.053235
## protime 22 0 0.000 10.3091 0.53087 10.100 10.000 10.6500 9.60 11.4 0.6395260 -0.557078
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 137 0 0.00000 1340.5036 1036.27652 1037.000 549.00 2071.000 41.000 3853.000 0.782925 -0.36646
## age 137 0 0.00000 53.3074 9.62692 52.999 46.39 60.706 30.864 76.709 0.031561 -0.46043
## bili 137 0 0.00000 5.9672 6.16374 3.400 1.40 7.300 0.300 28.000 1.500648 1.60901
## chol 137 44 32.11679 430.1398 294.84674 344.000 260.00 468.000 127.000 1775.000 2.453714 6.88168
## albumin 137 0 0.00000 3.3268 0.45716 3.360 3.08 3.600 1.960 4.520 -0.270966 0.35446
## copper 137 35 25.54745 130.3922 101.92321 102.500 58.00 172.750 14.000 588.000 2.101921 6.35488
## alk.phos 137 34 24.81752 2680.9301 2762.92155 1787.000 1057.00 2562.000 559.000 13862.400 2.257705 4.80501
## ast 137 34 24.81752 144.8246 60.27241 136.740 102.88 177.475 28.380 338.000 0.809307 0.92783
## trig 137 45 32.84672 142.9348 83.27682 121.000 91.75 171.250 50.000 598.000 2.580792 10.13232
## platelet 137 6 4.37956 243.7328 110.52183 224.000 160.00 304.000 62.000 721.000 1.106298 1.97335
## protime 137 1 0.72993 11.2301 1.04402 11.050 10.60 11.800 9.000 15.200 0.694927 0.83719
##
## p-values
## pNormal pNonNormal
## time 1.891e-16 1.128e-16
## age 2.380e-09 1.699e-08
## bili 2.610e-19 1.499e-24
## chol 1.615e-02 4.032e-02
## albumin 2.891e-07 1.164e-06
## copper 6.640e-13 3.932e-14
## alk.phos 8.635e-04 7.643e-05
## ast 1.309e-05 6.230e-07
## trig 7.392e-03 7.804e-03
## platelet 8.655e-03 2.246e-03
## protime 3.480e-12 1.221e-15
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## status: 0
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 17 6 35.29412 1 4 36.36364 36.36364
## 2 7 63.63636 100.00000
##
## ascites 17 6 35.29412 0 10 90.90909 90.90909
## 1 1 9.09091 100.00000
##
## spiders 17 6 35.29412 0 9 81.81818 81.81818
## 1 2 18.18182 100.00000
##
## edema 17 0 0.00000 0 16 94.11765 94.11765
## 0.5 1 5.88235 100.00000
## 1 0 0.00000 100.00000
##
## stage 17 0 0.00000 1 2 11.76471 11.76471
## 2 3 17.64706 29.41176
## 3 5 29.41176 58.82353
## 4 7 41.17647 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.00000 1 3 100.00000 100.00000
## 2 0 0.00000 100.00000
##
## ascites 3 0 0.00000 0 3 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 3 0 0.00000 0 3 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## edema 3 0 0.00000 0 3 100.00000 100.00000
## 0.5 0 0.00000 100.00000
## 1 0 0.00000 100.00000
##
## stage 3 0 0.00000 1 0 0.00000 0.00000
## 2 0 0.00000 0.00000
## 3 2 66.66667 66.66667
## 4 1 33.33333 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: m
## var n miss p.miss level freq percent cum.percent
## trt 24 2 8.33333 1 14 63.63636 63.63636
## 2 8 36.36364 100.00000
##
## ascites 24 2 8.33333 0 20 90.90909 90.90909
## 1 2 9.09091 100.00000
##
## spiders 24 2 8.33333 0 20 90.90909 90.90909
## 1 2 9.09091 100.00000
##
## edema 24 0 0.00000 0 17 70.83333 70.83333
## 0.5 4 16.66667 87.50000
## 1 3 12.50000 100.00000
##
## stage 24 0 0.00000 1 1 4.16667 4.16667
## 2 5 20.83333 25.00000
## 3 9 37.50000 62.50000
## 4 9 37.50000 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 0
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 215 58 26.97674 1 79 50.31847 50.31847
## 2 78 49.68153 100.00000
##
## ascites 215 58 26.97674 0 157 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 215 58 26.97674 0 126 80.25478 80.25478
## 1 31 19.74522 100.00000
##
## edema 215 0 0.00000 0 200 93.02326 93.02326
## 0.5 14 6.51163 99.53488
## 1 1 0.46512 100.00000
##
## stage 215 2 0.93023 1 17 7.98122 7.98122
## 2 61 28.63850 36.61972
## 3 92 43.19249 79.81221
## 4 43 20.18779 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 1
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 22 6 27.27273 1 7 43.75000 43.75000
## 2 9 56.25000 100.00000
##
## ascites 22 6 27.27273 0 16 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 22 6 27.27273 0 11 68.75000 68.75000
## 1 5 31.25000 100.00000
##
## edema 22 0 0.00000 0 19 86.36364 86.36364
## 0.5 3 13.63636 100.00000
## 1 0 0.00000 100.00000
##
## stage 22 0 0.00000 1 0 0.00000 0.00000
## 2 5 22.72727 22.72727
## 3 8 36.36364 59.09091
## 4 9 40.90909 100.00000
##
## ---------------------------------------------------------------------------------------
## status: 2
## sex: f
## var n miss p.miss level freq percent cum.percent
## trt 137 34 24.81752 1 51 49.51456 49.51456
## 2 52 50.48544 100.00000
##
## ascites 137 34 24.81752 0 82 79.61165 79.61165
## 1 21 20.38835 100.00000
##
## spiders 137 34 24.81752 0 53 51.45631 51.45631
## 1 50 48.54369 100.00000
##
## edema 137 0 0.00000 0 99 72.26277 72.26277
## 0.5 22 16.05839 88.32117
## 1 16 11.67883 100.00000
##
## stage 137 4 2.91971 1 1 0.75188 0.75188
## 2 18 13.53383 14.28571
## 3 39 29.32331 43.60902
## 4 75 56.39098 100.00000
##
##
## p-values
## pApprox pExact
## trt 0.3396357021 0.38716295778
## ascites 0.0000003538 0.00000003965
## spiders 0.0000063333 0.00000475377
## edema 0.0000109942 NA
## stage 0.0000008605 NA
## print method by default
print(catTable)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## format
print(catTable, format = "fp")
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
print(catTable, format = "f")
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 7 0 8 78 9
## ascites = 1 1 0 2 0 0
## spiders = 1 2 0 2 31 5
## edema
## 0 16 3 17 200 19
## 0.5 1 0 4 14 3
## 1 0 0 3 1 0
## stage
## 1 2 0 1 17 0
## 2 3 0 5 61 5
## 3 5 2 9 92 8
## 4 7 1 9 43 9
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 52 0.340
## ascites = 1 21 <0.001
## spiders = 1 50 <0.001
## edema <0.001
## 0 99
## 0.5 22
## 1 16
## stage <0.001
## 1 1
## 2 18
## 3 39
## 4 75
print(catTable, format = "p")
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 63.6 0.0 36.4 49.7 56.2
## ascites = 1 (%) 9.1 0.0 9.1 0.0 0.0
## spiders = 1 (%) 18.2 0.0 9.1 19.7 31.2
## edema (%)
## 0 94.1 100.0 70.8 93.0 86.4
## 0.5 5.9 0.0 16.7 6.5 13.6
## 1 0.0 0.0 12.5 0.5 0.0
## stage (%)
## 1 11.8 0.0 4.2 8.0 0.0
## 2 17.6 0.0 20.8 28.6 22.7
## 3 29.4 66.7 37.5 43.2 36.4
## 4 41.2 33.3 37.5 20.2 40.9
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 50.5 0.340
## ascites = 1 (%) 20.4 <0.001
## spiders = 1 (%) 48.5 <0.001
## edema (%) <0.001
## 0 72.3
## 0.5 16.1
## 1 11.7
## stage (%) <0.001
## 1 0.8
## 2 13.5
## 3 29.3
## 4 56.4
print(catTable, format = "pf")
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 % (freq) 63.6 (7) 0.0 (0) 36.4 (8) 49.7 (78) 56.2 (9)
## ascites = 1 % (freq) 9.1 (1) 0.0 (0) 9.1 (2) 0.0 (0) 0.0 (0)
## spiders = 1 % (freq) 18.2 (2) 0.0 (0) 9.1 (2) 19.7 (31) 31.2 (5)
## edema % (freq)
## 0 94.1 (16) 100.0 (3) 70.8 (17) 93.0 (200) 86.4 (19)
## 0.5 5.9 ( 1) 0.0 (0) 16.7 ( 4) 6.5 ( 14) 13.6 ( 3)
## 1 0.0 ( 0) 0.0 (0) 12.5 ( 3) 0.5 ( 1) 0.0 ( 0)
## stage % (freq)
## 1 11.8 (2) 0.0 (0) 4.2 (1) 8.0 (17) 0.0 (0)
## 2 17.6 (3) 0.0 (0) 20.8 (5) 28.6 (61) 22.7 (5)
## 3 29.4 (5) 66.7 (2) 37.5 (9) 43.2 (92) 36.4 (8)
## 4 41.2 (7) 33.3 (1) 37.5 (9) 20.2 (43) 40.9 (9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 % (freq) 50.5 (52) 0.340
## ascites = 1 % (freq) 20.4 (21) <0.001
## spiders = 1 % (freq) 48.5 (50) <0.001
## edema % (freq) <0.001
## 0 72.3 (99)
## 0.5 16.1 (22)
## 1 11.7 (16)
## stage % (freq) <0.001
## 1 0.8 ( 1)
## 2 13.5 (18)
## 3 29.3 (39)
## 4 56.4 (75)
## digits
print(catTable, digits = 5)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## exact
print(catTable, exact = TRUE)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.387 exact
## ascites = 1 (%) 21 (20.4) <0.001 exact
## spiders = 1 (%) 50 (48.5) <0.001 exact
## edema (%) NA exact
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) NA exact
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## Partially exact
print(catTable, exact = exactVars)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001 exact
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) NA exact
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## quote
print(catTable, quote = TRUE)
## "Stratified by status:sex"
## "" "0:m" "1:m" "2:m" "0:f"
## "n" "17" "3" "24" "215"
## "time (mean (sd))" "2462.18 (1217.33)" "1147.67 (785.78)" "1584.88 (1120.46)" "2322.95 (977.61)"
## "age (mean (sd))" " 55.69 (10.65)" " 42.16 (11.97)" " 57.42 (10.34)" " 49.02 (10.28)"
## "bili (mean (sd))" " 2.63 (2.62)" " 2.37 (1.15)" " 3.10 (2.25)" " 1.49 (1.83)"
## "chol (mean (sd))" " 367.91 (234.99)" " 415.33 (201.32)" " 352.05 (149.18)" " 323.31 (159.87)"
## "albumin (mean (sd))" " 3.47 (0.43)" " 3.75 (0.28)" " 3.55 (0.50)" " 3.60 (0.35)"
## "copper (mean (sd))" " 128.82 (113.07)" " 215.33 (198.03)" " 158.68 (78.57)" " 62.22 (48.66)"
## "alk.phos (mean (sd))" "2482.25 (3052.94)" " 921.00 (196.50)" "2189.02 (2243.18)" "1514.78 (1481.83)"
## "ast (mean (sd))" " 112.28 (50.94)" " 110.73 (30.99)" " 128.38 (47.39)" " 106.94 (53.06)"
## "trig (mean (sd))" " 131.82 (33.73)" " 165.00 (64.58)" " 129.76 (58.95)" " 110.21 (48.98)"
## "platelet (mean (sd))" " 213.44 (72.17)" " 289.00 (65.18)" " 235.71 (93.92)" " 264.78 (88.83)"
## "protime (mean (sd))" " 10.94 (0.80)" " 10.73 (0.51)" " 10.97 (1.07)" " 10.42 (0.92)"
## "trt = 2 (%)" " 7 (63.6) " " 0 (0.0) " " 8 (36.4) " " 78 (49.7) "
## "ascites = 1 (%)" " 1 (9.1) " " 0 (0.0) " " 2 (9.1) " " 0 (0.0) "
## "spiders = 1 (%)" " 2 (18.2) " " 0 (0.0) " " 2 (9.1) " " 31 (19.7) "
## "edema (%)" " " " " " " " "
## " 0" " 16 (94.1) " " 3 (100.0) " " 17 (70.8) " " 200 (93.0) "
## " 0.5" " 1 ( 5.9) " " 0 ( 0.0) " " 4 (16.7) " " 14 ( 6.5) "
## " 1" " 0 ( 0.0) " " 0 ( 0.0) " " 3 (12.5) " " 1 ( 0.5) "
## "stage (%)" " " " " " " " "
## " 1" " 2 (11.8) " " 0 ( 0.0) " " 1 ( 4.2) " " 17 ( 8.0) "
## " 2" " 3 (17.6) " " 0 ( 0.0) " " 5 (20.8) " " 61 (28.6) "
## " 3" " 5 (29.4) " " 2 (66.7) " " 9 (37.5) " " 92 (43.2) "
## " 4" " 7 (41.2) " " 1 (33.3) " " 9 (37.5) " " 43 (20.2) "
## "Stratified by status:sex"
## "" "1:f" "2:f" "p" "test"
## "n" "22" "137" "" ""
## "time (mean (sd))" "1600.55 (750.70)" "1340.50 (1036.28)" "<0.001" ""
## "age (mean (sd))" " 41.63 (5.67)" " 53.31 (9.63)" "<0.001" ""
## "bili (mean (sd))" " 3.72 (3.80)" " 5.97 (6.16)" "<0.001" ""
## "chol (mean (sd))" " 444.33 (361.62)" " 430.14 (294.85)" " 0.016" ""
## "albumin (mean (sd))" " 3.45 (0.47)" " 3.33 (0.46)" "<0.001" ""
## "copper (mean (sd))" " 106.88 (69.34)" " 130.39 (101.92)" "<0.001" ""
## "alk.phos (mean (sd))" "1650.38 (864.55)" "2680.93 (2762.92)" " 0.001" ""
## "ast (mean (sd))" " 133.75 (37.69)" " 144.82 (60.27)" "<0.001" ""
## "trig (mean (sd))" " 127.73 (72.11)" " 142.93 (83.28)" " 0.007" ""
## "platelet (mean (sd))" " 312.41 (107.56)" " 243.73 (110.52)" " 0.009" ""
## "protime (mean (sd))" " 10.31 (0.53)" " 11.23 (1.04)" "<0.001" ""
## "trt = 2 (%)" " 9 (56.2) " " 52 (50.5) " " 0.340" ""
## "ascites = 1 (%)" " 0 (0.0) " " 21 (20.4) " "<0.001" ""
## "spiders = 1 (%)" " 5 (31.2) " " 50 (48.5) " "<0.001" ""
## "edema (%)" " " " " "<0.001" ""
## " 0" " 19 (86.4) " " 99 (72.3) " "" ""
## " 0.5" " 3 (13.6) " " 22 (16.1) " "" ""
## " 1" " 0 ( 0.0) " " 16 (11.7) " "" ""
## "stage (%)" " " " " "<0.001" ""
## " 1" " 0 ( 0.0) " " 1 ( 0.8) " "" ""
## " 2" " 5 (22.7) " " 18 (13.5) " "" ""
## " 3" " 8 (36.4) " " 39 (29.3) " "" ""
## " 4" " 9 (40.9) " " 75 (56.4) " "" ""
## No test
print(catTable, test = TRUE)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## pDigits
print(catTable, pDigits = 5)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## showAllLevel
print(catTable, showAllLevels = TRUE)
## Stratified by status:sex
## level 0:m 1:m 2:m 0:f
## n 17 3 24 215
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92)
## trt (%) 1 4 (36.4) 3 (100.0) 14 (63.6) 79 (50.3)
## 2 7 (63.6) 0 ( 0.0) 8 (36.4) 78 (49.7)
## ascites (%) 0 10 (90.9) 3 (100.0) 20 (90.9) 157 (100.0)
## 1 1 ( 9.1) 0 ( 0.0) 2 ( 9.1) 0 ( 0.0)
## spiders (%) 0 9 (81.8) 3 (100.0) 20 (90.9) 126 (80.3)
## 1 2 (18.2) 0 ( 0.0) 2 ( 9.1) 31 (19.7)
## edema (%) 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5)
## stage (%) 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2)
## Stratified by status:sex
## 1:f 2:f p test
## n 22 137
## time (mean (sd)) 1600.55 (750.70) 1340.50 (1036.28) <0.001
## age (mean (sd)) 41.63 (5.67) 53.31 (9.63) <0.001
## bili (mean (sd)) 3.72 (3.80) 5.97 (6.16) <0.001
## chol (mean (sd)) 444.33 (361.62) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.45 (0.47) 3.33 (0.46) <0.001
## copper (mean (sd)) 106.88 (69.34) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 1650.38 (864.55) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 133.75 (37.69) 144.82 (60.27) <0.001
## trig (mean (sd)) 127.73 (72.11) 142.93 (83.28) 0.007
## platelet (mean (sd)) 312.41 (107.56) 243.73 (110.52) 0.009
## protime (mean (sd)) 10.31 (0.53) 11.23 (1.04) <0.001
## trt (%) 7 (43.8) 51 (49.5) 0.340
## 9 (56.2) 52 (50.5)
## ascites (%) 16 (100.0) 82 (79.6) <0.001
## 0 ( 0.0) 21 (20.4)
## spiders (%) 11 (68.8) 53 (51.5) <0.001
## 5 (31.2) 50 (48.5)
## edema (%) 19 (86.4) 99 (72.3) <0.001
## 3 (13.6) 22 (16.1)
## 0 ( 0.0) 16 (11.7)
## stage (%) 0 ( 0.0) 1 ( 0.8) <0.001
## 5 (22.7) 18 (13.5)
## 8 (36.4) 39 (29.3)
## 9 (40.9) 75 (56.4)
## explain
print(catTable, explain = FALSE)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time 1340.50 (1036.28) <0.001
## age 53.31 (9.63) <0.001
## bili 5.97 (6.16) <0.001
## chol 430.14 (294.85) 0.016
## albumin 3.33 (0.46) <0.001
## copper 130.39 (101.92) <0.001
## alk.phos 2680.93 (2762.92) 0.001
## ast 144.82 (60.27) <0.001
## trig 142.93 (83.28) 0.007
## platelet 243.73 (110.52) 0.009
## protime 11.23 (1.04) <0.001
## trt = 2 52 (50.5) 0.340
## ascites = 1 21 (20.4) <0.001
## spiders = 1 50 (48.5) <0.001
## edema <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
## CrossTable
print(catTable, CrossTable = TRUE)
## Stratified by status:sex
## 0:m 1:m 2:m 0:f 1:f
## n 17 3 24 215 22
## time (mean (sd)) 2462.18 (1217.33) 1147.67 (785.78) 1584.88 (1120.46) 2322.95 (977.61) 1600.55 (750.70)
## age (mean (sd)) 55.69 (10.65) 42.16 (11.97) 57.42 (10.34) 49.02 (10.28) 41.63 (5.67)
## bili (mean (sd)) 2.63 (2.62) 2.37 (1.15) 3.10 (2.25) 1.49 (1.83) 3.72 (3.80)
## chol (mean (sd)) 367.91 (234.99) 415.33 (201.32) 352.05 (149.18) 323.31 (159.87) 444.33 (361.62)
## albumin (mean (sd)) 3.47 (0.43) 3.75 (0.28) 3.55 (0.50) 3.60 (0.35) 3.45 (0.47)
## copper (mean (sd)) 128.82 (113.07) 215.33 (198.03) 158.68 (78.57) 62.22 (48.66) 106.88 (69.34)
## alk.phos (mean (sd)) 2482.25 (3052.94) 921.00 (196.50) 2189.02 (2243.18) 1514.78 (1481.83) 1650.38 (864.55)
## ast (mean (sd)) 112.28 (50.94) 110.73 (30.99) 128.38 (47.39) 106.94 (53.06) 133.75 (37.69)
## trig (mean (sd)) 131.82 (33.73) 165.00 (64.58) 129.76 (58.95) 110.21 (48.98) 127.73 (72.11)
## platelet (mean (sd)) 213.44 (72.17) 289.00 (65.18) 235.71 (93.92) 264.78 (88.83) 312.41 (107.56)
## protime (mean (sd)) 10.94 (0.80) 10.73 (0.51) 10.97 (1.07) 10.42 (0.92) 10.31 (0.53)
## trt = 2 (%) 7 (63.6) 0 (0.0) 8 (36.4) 78 (49.7) 9 (56.2)
## ascites = 1 (%) 1 (9.1) 0 (0.0) 2 (9.1) 0 (0.0) 0 (0.0)
## spiders = 1 (%) 2 (18.2) 0 (0.0) 2 (9.1) 31 (19.7) 5 (31.2)
## edema (%)
## 0 16 (94.1) 3 (100.0) 17 (70.8) 200 (93.0) 19 (86.4)
## 0.5 1 ( 5.9) 0 ( 0.0) 4 (16.7) 14 ( 6.5) 3 (13.6)
## 1 0 ( 0.0) 0 ( 0.0) 3 (12.5) 1 ( 0.5) 0 ( 0.0)
## stage (%)
## 1 2 (11.8) 0 ( 0.0) 1 ( 4.2) 17 ( 8.0) 0 ( 0.0)
## 2 3 (17.6) 0 ( 0.0) 5 (20.8) 61 (28.6) 5 (22.7)
## 3 5 (29.4) 2 (66.7) 9 (37.5) 92 (43.2) 8 (36.4)
## 4 7 (41.2) 1 (33.3) 9 (37.5) 43 (20.2) 9 (40.9)
## Stratified by status:sex
## 2:f p test
## n 137
## time (mean (sd)) 1340.50 (1036.28) <0.001
## age (mean (sd)) 53.31 (9.63) <0.001
## bili (mean (sd)) 5.97 (6.16) <0.001
## chol (mean (sd)) 430.14 (294.85) 0.016
## albumin (mean (sd)) 3.33 (0.46) <0.001
## copper (mean (sd)) 130.39 (101.92) <0.001
## alk.phos (mean (sd)) 2680.93 (2762.92) 0.001
## ast (mean (sd)) 144.82 (60.27) <0.001
## trig (mean (sd)) 142.93 (83.28) 0.007
## platelet (mean (sd)) 243.73 (110.52) 0.009
## protime (mean (sd)) 11.23 (1.04) <0.001
## trt = 2 (%) 52 (50.5) 0.340
## ascites = 1 (%) 21 (20.4) <0.001
## spiders = 1 (%) 50 (48.5) <0.001
## edema (%) <0.001
## 0 99 (72.3)
## 0.5 22 (16.1)
## 1 16 (11.7)
## stage (%) <0.001
## 1 1 ( 0.8)
## 2 18 (13.5)
## 3 39 (29.3)
## 4 75 (56.4)
### Behaviors on correct data format (stratified, 3-variable)
## Creation
catTable <- CreateTableOne(vars = vars, strata = strataThreeVars, data = dataFrame)
## print method
catTable
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## summary method
summary(catTable)
##
## ### Summary of continuous variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 15 0 0 2412 1422.2 2386 1186 3608 140.0 4459 0.1 -1.3
## age 15 0 0 51 12.1 49 44 61 33.5 70 0.2 -1.0
## bili 15 0 0 2 1.3 2 2 2 0.6 6 1.7 4.4
## chol 15 0 0 360 165.0 317 250 438 168.0 660 0.9 -0.5
## albumin 15 0 0 4 0.4 4 3 4 2.6 4 -1.3 2.4
## copper 15 0 0 166 107.9 158 98 214 13.0 444 1.0 2.1
## alk.phos 15 0 0 2839 3424.6 1056 740 3471 516.0 10397 1.6 1.4
## ast 15 0 0 125 43.6 127 102 141 56.8 206 0.3 -0.3
## trig 15 0 0 132 55.5 118 86 183 55.0 219 0.2 -1.4
## platelet 15 1 7 247 88.7 214 181 329 108.0 394 0.3 -1.2
## protime 15 0 0 11 1.2 11 10 11 9.7 14 1.5 2.0
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 132 0 0.0 2375 1020.6 2361.0 1475.0 3089 198.0 4556 0.17 -0.7
## age 132 0 0.0 48 10.2 48.0 40.7 56 28.9 75 0.27 -0.5
## bili 132 0 0.0 2 2.4 0.9 0.6 1 0.3 22 5.83 45.1
## chol 132 15 11.4 337 158.9 296.0 242.0 390 120.0 1276 2.85 12.2
## albumin 132 0 0.0 4 0.3 3.7 3.4 4 2.8 5 0.07 0.2
## copper 132 1 0.8 66 56.7 52.0 32.0 78 4.0 464 3.40 19.0
## alk.phos 132 0 0.0 1634 1732.6 1177.5 793.2 1690 369.0 12259 4.00 18.8
## ast 132 0 0.0 111 52.1 99.1 73.4 136 28.4 329 1.28 2.1
## trig 132 15 11.4 111 52.3 100.0 74.0 135 44.0 382 1.87 6.0
## platelet 132 0 0.0 287 87.7 278.0 226.5 336 71.0 514 0.27 -0.2
## protime 132 0 0.0 10 0.9 10.3 9.9 11 9.0 17 3.79 25.0
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 5 0 0 1130 1382.6 388 51 2081 41 3090 0.9 -1.63
## age 5 0 0 65 10.5 66 61 71 49 77 -0.7 0.39
## bili 5 0 0 7 7.7 2 1 13 1 18 0.9 -1.80
## chol 5 0 0 253 86.8 206 200 302 175 382 1.0 -0.68
## albumin 5 0 0 3 0.5 3 3 3 2 4 -0.2 0.49
## copper 5 0 0 112 72.7 108 58 140 36 220 0.7 -0.07
## alk.phos 5 0 0 1258 416.4 1516 918 1523 705 1626 -0.7 -2.41
## ast 5 0 0 171 118.8 147 87 239 43 338 0.6 -0.98
## trig 5 1 20 138 67.3 128 102 164 70 229 0.9 1.02
## platelet 5 0 0 193 116.5 145 126 302 62 329 0.3 -2.55
## protime 5 0 0 12 1.2 12 12 13 10 13 -0.8 -0.29
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 18 0 0 1703 1198.6 1300 822 2088 533.0 4191 1.1 0.05
## age 18 0 0 59 9.2 58 51 67 44.5 75 0.2 -1.19
## bili 18 0 0 3 2.6 2 1 5 0.6 9 0.8 -0.76
## chol 18 0 0 383 194.3 361 251 427 178.0 1000 2.0 5.36
## albumin 18 0 0 4 0.3 4 3 4 3.0 4 -0.6 -0.90
## copper 18 0 0 142 82.9 114 82 197 25.0 290 0.5 -1.05
## alk.phos 18 0 0 1823 1260.7 1222 1029 2387 681.0 5719 1.9 4.47
## ast 18 0 0 124 49.0 119 84 169 57.4 222 0.5 -0.87
## trig 18 0 0 138 49.3 127 95 154 83.0 242 1.0 0.09
## platelet 18 0 0 241 86.3 250 190 299 70.0 360 -0.5 -0.74
## protime 18 0 0 11 0.6 11 10 11 9.8 12 -0.2 -0.68
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 123 0 0 1838 1007.4 1741 1084 2391 71.0 4523 0.71 0.2
## age 123 0 0 49 9.7 49 41 56 26.3 69 -0.06 -0.7
## bili 123 0 0 4 4.8 2 1 5 0.4 28 2.64 8.2
## chol 123 10 8 411 298.7 322 260 408 149.0 1775 3.09 9.8
## albumin 123 0 0 3 0.4 3 3 4 2.0 4 -0.62 1.6
## copper 123 0 0 104 85.0 76 50 126 11.0 588 2.47 9.2
## alk.phos 123 0 0 2260 2445.2 1428 958 2280 289.0 13862 2.68 7.4
## ast 123 0 0 130 60.2 121 90 159 26.4 457 1.76 6.5
## trig 123 11 9 127 60.1 108 90 150 33.0 322 1.40 2.0
## platelet 123 3 2 253 98.0 239 184 306 79.0 563 0.71 0.7
## protime 123 0 0 11 1.0 11 10 12 9.2 13 0.65 -0.3
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0 1058 799.0 1217 704 1491 191.0 1765 -0.86 NaN
## age 3 0 0 68 11.1 68 62 73 56.2 78 -0.16 NaN
## bili 3 0 0 3 3.5 1 1 4 0.8 7 1.69 NaN
## chol 3 1 33 197 65.1 197 174 220 151.0 243 NaN NaN
## albumin 3 0 0 3 0.5 3 3 3 2.3 3 -1.71 NaN
## copper 3 0 0 165 186.5 73 58 226 43.0 380 1.68 NaN
## alk.phos 3 0 0 941 195.4 983 856 1048 728.0 1112 -0.92 NaN
## ast 3 0 0 92 58.7 71 59 115 46.5 158 1.40 NaN
## trig 3 1 33 102 74.2 102 75 128 49.0 154 NaN NaN
## platelet 3 0 0 155 58.0 156 126 184 97.0 213 -0.05 NaN
## protime 3 0 0 12 1.2 11 11 12 11.0 13 1.68 NaN
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 16 0 0 668 805.6 341 207 916 77 3222 2.39 6.6
## age 16 0 0 55 8.9 55 48 61 39 71 0.05 -0.5
## bili 16 0 0 11 7.8 11 4 17 1 24 0.18 -1.4
## chol 16 2 12 364 247.7 278 222 382 175 1092 2.30 5.7
## albumin 16 0 0 3 0.5 3 3 3 2 4 0.26 -0.6
## copper 16 1 6 184 125.7 182 130 215 16 558 1.80 5.5
## alk.phos 16 0 0 2522 2043.4 1776 1070 3708 559 6931 1.16 0.1
## ast 16 0 0 140 43.2 136 105 177 74 227 0.29 -0.6
## trig 16 2 12 194 145.2 162 118 188 68 598 2.18 4.5
## platelet 16 0 0 197 94.7 178 138 224 80 401 1.19 1.0
## protime 16 0 0 12 1.1 12 11 12 11 15 2.20 6.1
##
## p-values
## pNormal pNonNormal
## time 2.212e-09 3.079e-09
## age 4.535e-07 2.860e-05
## bili 3.761e-15 1.059e-13
## chol 2.101e-01 7.850e-02
## albumin 5.323e-15 8.993e-11
## copper 4.615e-10 4.233e-10
## alk.phos 1.087e-01 7.650e-02
## ast 3.181e-02 2.190e-02
## trig 6.931e-04 8.213e-03
## platelet 2.232e-04 1.645e-04
## protime 1.554e-08 2.096e-08
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 15 0 0.0 1 9 60.0 60.0
## 2 6 40.0 100.0
##
## ascites 15 0 0.0 0 15 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 15 0 0.0 0 14 93.3 93.3
## 1 1 6.7 100.0
##
## edema 15 0 0.0 0 13 86.7 86.7
## 0.5 1 6.7 93.3
## 1 1 6.7 100.0
##
## stage 15 0 0.0 1 3 20.0 20.0
## 2 3 20.0 40.0
## 3 7 46.7 86.7
## 4 2 13.3 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 132 0 0.0 1 73 55.3 55.3
## 2 59 44.7 100.0
##
## ascites 132 0 0.0 0 132 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 132 0 0.0 0 111 84.1 84.1
## 1 21 15.9 100.0
##
## edema 132 0 0.0 0 123 93.2 93.2
## 0.5 8 6.1 99.2
## 1 1 0.8 100.0
##
## stage 132 0 0.0 1 13 9.8 9.8
## 2 45 34.1 43.9
## 3 59 44.7 88.6
## 4 15 11.4 100.0
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 5 0 0.0 1 3 60.0 60.0
## 2 2 40.0 100.0
##
## ascites 5 0 0.0 0 0 0.0 0.0
## 1 5 100.0 100.0
##
## spiders 5 0 0.0 0 4 80.0 80.0
## 1 1 20.0 100.0
##
## edema 5 0 0.0 0 2 40.0 40.0
## 0.5 0 0.0 40.0
## 1 3 60.0 100.0
##
## stage 5 0 0.0 1 0 0.0 0.0
## 2 0 0.0 0.0
## 3 1 20.0 20.0
## 4 4 80.0 100.0
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 18 0 0.0 1 11 61.1 61.1
## 2 7 38.9 100.0
##
## ascites 18 0 0.0 0 18 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 18 0 0.0 0 16 88.9 88.9
## 1 2 11.1 100.0
##
## edema 18 0 0.0 0 15 83.3 83.3
## 0.5 3 16.7 100.0
## 1 0 0.0 100.0
##
## stage 18 0 0.0 1 0 0.0 0.0
## 2 3 16.7 16.7
## 3 5 27.8 44.4
## 4 10 55.6 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 123 0 0.0 1 51 41.5 41.5
## 2 72 58.5 100.0
##
## ascites 123 0 0.0 0 123 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 123 0 0.0 0 70 56.9 56.9
## 1 53 43.1 100.0
##
## edema 123 0 0.0 0 106 86.2 86.2
## 0.5 13 10.6 96.7
## 1 4 3.3 100.0
##
## stage 123 0 0.0 1 0 0.0 0.0
## 2 14 11.4 11.4
## 3 48 39.0 50.4
## 4 61 49.6 100.0
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.0 1 1 33.3 33.3
## 2 2 66.7 100.0
##
## ascites 3 0 0.0 0 0 0.0 0.0
## 1 3 100.0 100.0
##
## spiders 3 0 0.0 0 2 66.7 66.7
## 1 1 33.3 100.0
##
## edema 3 0 0.0 0 1 33.3 33.3
## 0.5 0 0.0 33.3
## 1 2 66.7 100.0
##
## stage 3 0 0.0 1 0 0.0 0.0
## 2 0 0.0 0.0
## 3 0 0.0 0.0
## 4 3 100.0 100.0
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 16 0 0.0 1 10 62.5 62.5
## 2 6 37.5 100.0
##
## ascites 16 0 0.0 0 0 0.0 0.0
## 1 16 100.0 100.0
##
## spiders 16 0 0.0 0 5 31.2 31.2
## 1 11 68.8 100.0
##
## edema 16 0 0.0 0 3 18.8 18.8
## 0.5 4 25.0 43.8
## 1 9 56.2 100.0
##
## stage 16 0 0.0 1 0 0.0 0.0
## 2 2 12.5 12.5
## 3 0 0.0 12.5
## 4 14 87.5 100.0
##
##
## p-values
## pApprox pExact
## trt NaN 2.142e-01
## ascites NaN 2.124e-36
## spiders NaN NA
## edema NaN NA
## stage NaN NA
## digits
summary(catTable, digits = 5)
##
## ### Summary of continuous variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 15 0 0.0000 2412.3333 1422.1935 2386.000 1186.000 3607.500 140.000 4459.000 0.11514 -1.28856
## age 15 0 0.0000 51.0658 12.1127 49.136 44.234 60.798 33.476 70.073 0.18822 -1.02481
## bili 15 0 0.0000 2.2400 1.3092 1.900 1.550 2.450 0.600 6.000 1.70918 4.35377
## chol 15 0 0.0000 360.3333 164.9847 317.000 250.500 438.000 168.000 660.000 0.86891 -0.45501
## albumin 15 0 0.0000 3.7227 0.4384 3.830 3.470 3.965 2.560 4.300 -1.26772 2.40204
## copper 15 0 0.0000 166.2667 107.9421 158.000 98.000 213.500 13.000 444.000 1.02399 2.05082
## alk.phos 15 0 0.0000 2839.4133 3424.6273 1056.000 740.000 3470.700 516.000 10396.800 1.61265 1.35674
## ast 15 0 0.0000 125.0153 43.6168 127.000 102.300 141.050 56.760 206.400 0.26480 -0.32296
## trig 15 0 0.0000 132.2000 55.5482 118.000 85.500 183.000 55.000 219.000 0.19362 -1.41698
## platelet 15 1 6.6667 246.5714 88.7041 213.500 180.750 329.250 108.000 394.000 0.25147 -1.16574
## protime 15 0 0.0000 11.0667 1.1938 10.600 10.250 11.350 9.700 14.100 1.47431 1.95643
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 132 0 0.00000 2375.1894 1020.61775 2361.000 1475.000 3089.000 198.000 4556.000 0.167853 -0.72608
## age 132 0 0.00000 48.4083 10.22279 47.981 40.676 56.098 28.884 75.012 0.271431 -0.54517
## bili 132 0 0.00000 1.6121 2.39898 0.900 0.600 1.425 0.300 22.500 5.826786 45.13848
## chol 132 15 11.36364 336.9915 158.86242 296.000 242.000 390.000 120.000 1276.000 2.852877 12.22718
## albumin 132 0 0.00000 3.6704 0.33816 3.660 3.440 3.875 2.750 4.640 0.074731 0.20094
## copper 132 1 0.75758 65.5573 56.66177 52.000 32.000 78.500 4.000 464.000 3.395070 18.96074
## alk.phos 132 0 0.00000 1634.4515 1732.64762 1177.500 793.250 1689.750 369.000 12258.800 3.998408 18.78644
## ast 132 0 0.00000 111.3505 52.09675 99.100 73.360 136.250 28.380 328.600 1.277914 2.09790
## trig 132 15 11.36364 110.7009 52.29018 100.000 74.000 135.000 44.000 382.000 1.874578 5.96483
## platelet 132 0 0.00000 287.3636 87.73723 278.000 226.500 336.500 71.000 514.000 0.266767 -0.16977
## protime 132 0 0.00000 10.4159 0.88627 10.300 9.900 10.700 9.000 17.100 3.790505 24.98418
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 5 0 0 1130.200 1382.63578 388.000 51.000 2081.00 41.000 3090.000 0.85580 -1.625552
## age 5 0 0 64.567 10.52400 65.884 60.706 70.56 48.977 76.709 -0.65743 0.388535
## bili 5 0 0 7.140 7.65134 2.500 1.400 12.60 1.300 17.900 0.85610 -1.797767
## chol 5 0 0 253.000 86.81014 206.000 200.000 302.00 175.000 382.000 0.97898 -0.682133
## albumin 5 0 0 2.854 0.53687 2.750 2.740 3.13 2.100 3.550 -0.19680 0.485519
## copper 5 0 0 112.400 72.72414 108.000 58.000 140.00 36.000 220.000 0.71474 -0.069888
## alk.phos 5 0 0 1257.600 416.41962 1516.000 918.000 1523.00 705.000 1626.000 -0.70377 -2.413395
## ast 5 0 0 170.830 118.75143 147.250 86.800 238.70 43.400 338.000 0.57441 -0.984893
## trig 5 1 20 138.500 67.34241 127.500 101.500 164.50 70.000 229.000 0.87597 1.020728
## platelet 5 0 0 192.800 116.54484 145.000 126.000 302.00 62.000 329.000 0.31155 -2.551503
## protime 5 0 0 12.020 1.16490 12.200 11.500 12.90 10.300 13.200 -0.76406 -0.285444
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 18 0 0 1702.7778 1198.55185 1299.500 821.750 2088.5000 533.00 4191.000 1.14049 0.052903
## age 18 0 0 58.5952 9.18409 58.261 51.305 66.6057 44.52 74.524 0.21632 -1.194823
## bili 18 0 0 3.3667 2.60903 2.300 1.250 5.2000 0.60 8.600 0.77784 -0.760092
## chol 18 0 0 382.6111 194.31180 361.000 251.250 426.7500 178.00 1000.000 1.98438 5.357124
## albumin 18 0 0 3.5906 0.33574 3.710 3.385 3.8525 3.00 4.000 -0.60837 -0.901375
## copper 18 0 0 142.4444 82.93741 114.500 81.750 197.0000 25.00 290.000 0.47972 -1.048835
## alk.phos 18 0 0 1822.8889 1260.71921 1222.500 1028.750 2387.0000 681.00 5719.000 1.92275 4.468294
## ast 18 0 0 124.4906 49.03280 118.575 84.275 168.9500 57.35 221.880 0.48276 -0.872198
## trig 18 0 0 138.0000 49.33916 127.000 95.000 153.7500 83.00 242.000 1.00071 0.085859
## platelet 18 0 0 240.9444 86.30416 250.000 189.500 298.7500 70.00 360.000 -0.47422 -0.738498
## protime 18 0 0 10.8167 0.62521 10.900 10.350 11.2750 9.80 12.000 -0.24516 -0.675953
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 123 0 0.0000 1838.2846 1007.36324 1741.000 1083.500 2391.00 71.000 4523.000 0.708350 0.24326
## age 123 0 0.0000 48.7093 9.71164 49.339 41.380 55.63 26.278 69.347 -0.060499 -0.68836
## bili 123 0 0.0000 3.9715 4.83689 2.100 1.000 5.00 0.400 28.000 2.637238 8.21899
## chol 123 10 8.1301 411.1416 298.66715 322.000 260.000 408.00 149.000 1775.000 3.088032 9.84264
## albumin 123 0 0.0000 3.4339 0.38584 3.480 3.205 3.65 1.960 4.240 -0.624972 1.57126
## copper 123 0 0.0000 104.1057 85.01165 76.000 50.000 125.50 11.000 588.000 2.471784 9.17827
## alk.phos 123 0 0.0000 2259.9041 2445.15851 1428.000 958.000 2280.00 289.000 13862.400 2.680596 7.37586
## ast 123 0 0.0000 130.4689 60.15503 120.900 90.450 158.88 26.350 457.250 1.758908 6.53695
## trig 123 11 8.9431 127.4821 60.13543 108.500 89.500 149.75 33.000 322.000 1.399209 2.03784
## platelet 123 3 2.4390 253.0583 97.99025 239.000 184.500 306.00 79.000 563.000 0.713091 0.71525
## protime 123 0 0.0000 10.7862 0.96235 10.600 10.000 11.50 9.200 13.300 0.648440 -0.33995
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0.000 1057.6667 799.00521 1217.000 704.000 1491.000 191.000 1765.000 -0.861681 NaN
## age 3 0 0.000 67.5227 11.11381 67.907 62.064 73.173 56.222 78.439 -0.155382 NaN
## bili 3 0 0.000 3.0667 3.50190 1.300 1.050 4.200 0.800 7.100 1.692412 NaN
## chol 3 1 33.333 197.0000 65.05382 197.000 174.000 220.000 151.000 243.000 NaN NaN
## albumin 3 0 0.000 2.7933 0.45391 3.030 2.650 3.055 2.270 3.080 -1.708437 NaN
## copper 3 0 0.000 165.3333 186.51095 73.000 58.000 226.500 43.000 380.000 1.681773 NaN
## alk.phos 3 0 0.000 941.0000 195.41494 983.000 855.500 1047.500 728.000 1112.000 -0.922495 NaN
## ast 3 0 0.000 91.8667 58.65325 71.000 58.750 114.550 46.500 158.100 1.398308 NaN
## trig 3 1 33.333 101.5000 74.24621 101.500 75.250 127.750 49.000 154.000 NaN NaN
## platelet 3 0 0.000 155.3333 58.00287 156.000 126.500 184.500 97.000 213.000 -0.051715 NaN
## protime 3 0 0.000 11.8000 1.21655 11.200 11.100 12.200 11.000 13.200 1.679536 NaN
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 16 0 0.00 668.2500 805.63685 341.000 206.750 915.750 77.000 3222.000 2.389812 6.58466
## age 16 0 0.00 54.9174 8.90951 54.917 48.320 61.364 39.198 70.908 0.048155 -0.53000
## bili 16 0 0.00 10.9688 7.80425 10.600 4.000 17.250 1.200 24.500 0.177903 -1.43003
## chol 16 2 12.50 364.5000 247.72216 278.500 222.000 382.250 175.000 1092.000 2.299491 5.69894
## albumin 16 0 0.00 3.0162 0.45119 3.030 2.630 3.320 2.330 3.900 0.261500 -0.61381
## copper 16 1 6.25 184.1333 125.70650 182.000 130.500 215.000 16.000 558.000 1.797284 5.46664
## alk.phos 16 0 0.00 2522.4125 2043.38875 1775.500 1070.250 3708.050 559.000 6931.200 1.158243 0.10099
## ast 16 0 0.00 140.3644 43.21937 135.975 105.463 176.513 73.530 227.040 0.288487 -0.64845
## trig 16 2 12.50 193.7143 145.18870 161.500 118.000 188.000 68.000 598.000 2.184143 4.54837
## platelet 16 0 0.00 197.3750 94.70648 178.000 138.500 224.000 80.000 401.000 1.194066 0.96941
## protime 16 0 0.00 11.7875 1.09354 11.600 11.075 12.025 10.600 15.200 2.200526 6.14523
##
## p-values
## pNormal pNonNormal
## time 2.212e-09 3.079e-09
## age 4.535e-07 2.860e-05
## bili 3.761e-15 1.059e-13
## chol 2.101e-01 7.850e-02
## albumin 5.323e-15 8.993e-11
## copper 4.615e-10 4.233e-10
## alk.phos 1.087e-01 7.650e-02
## ast 3.181e-02 2.190e-02
## trig 6.931e-04 8.213e-03
## platelet 2.232e-04 1.645e-04
## protime 1.554e-08 2.096e-08
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## sex: m
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 15 0 0.00000 1 9 60.00000 60.00000
## 2 6 40.00000 100.00000
##
## ascites 15 0 0.00000 0 15 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 15 0 0.00000 0 14 93.33333 93.33333
## 1 1 6.66667 100.00000
##
## edema 15 0 0.00000 0 13 86.66667 86.66667
## 0.5 1 6.66667 93.33333
## 1 1 6.66667 100.00000
##
## stage 15 0 0.00000 1 3 20.00000 20.00000
## 2 3 20.00000 40.00000
## 3 7 46.66667 86.66667
## 4 2 13.33333 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 132 0 0.00000 1 73 55.30303 55.30303
## 2 59 44.69697 100.00000
##
## ascites 132 0 0.00000 0 132 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 132 0 0.00000 0 111 84.09091 84.09091
## 1 21 15.90909 100.00000
##
## edema 132 0 0.00000 0 123 93.18182 93.18182
## 0.5 8 6.06061 99.24242
## 1 1 0.75758 100.00000
##
## stage 132 0 0.00000 1 13 9.84848 9.84848
## 2 45 34.09091 43.93939
## 3 59 44.69697 88.63636
## 4 15 11.36364 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 0
## NULL
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 0
## var n miss p.miss level freq percent cum.percent
## trt 5 0 0.00000 1 3 60.00000 60.00000
## 2 2 40.00000 100.00000
##
## ascites 5 0 0.00000 0 0 0.00000 0.00000
## 1 5 100.00000 100.00000
##
## spiders 5 0 0.00000 0 4 80.00000 80.00000
## 1 1 20.00000 100.00000
##
## edema 5 0 0.00000 0 2 40.00000 40.00000
## 0.5 0 0.00000 40.00000
## 1 3 60.00000 100.00000
##
## stage 5 0 0.00000 1 0 0.00000 0.00000
## 2 0 0.00000 0.00000
## 3 1 20.00000 20.00000
## 4 4 80.00000 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 18 0 0.00000 1 11 61.11111 61.11111
## 2 7 38.88889 100.00000
##
## ascites 18 0 0.00000 0 18 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 18 0 0.00000 0 16 88.88889 88.88889
## 1 2 11.11111 100.00000
##
## edema 18 0 0.00000 0 15 83.33333 83.33333
## 0.5 3 16.66667 100.00000
## 1 0 0.00000 100.00000
##
## stage 18 0 0.00000 1 0 0.00000 0.00000
## 2 3 16.66667 16.66667
## 3 5 27.77778 44.44444
## 4 10 55.55556 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 0
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 123 0 0.00000 1 51 41.46341 41.46341
## 2 72 58.53659 100.00000
##
## ascites 123 0 0.00000 0 123 100.00000 100.00000
## 1 0 0.00000 100.00000
##
## spiders 123 0 0.00000 0 70 56.91057 56.91057
## 1 53 43.08943 100.00000
##
## edema 123 0 0.00000 0 106 86.17886 86.17886
## 0.5 13 10.56911 96.74797
## 1 4 3.25203 100.00000
##
## stage 123 0 0.00000 1 0 0.00000 0.00000
## 2 14 11.38211 11.38211
## 3 48 39.02439 50.40650
## 4 61 49.59350 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: m
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.00000 1 1 33.33333 33.33333
## 2 2 66.66667 100.00000
##
## ascites 3 0 0.00000 0 0 0.00000 0.00000
## 1 3 100.00000 100.00000
##
## spiders 3 0 0.00000 0 2 66.66667 66.66667
## 1 1 33.33333 100.00000
##
## edema 3 0 0.00000 0 1 33.33333 33.33333
## 0.5 0 0.00000 33.33333
## 1 2 66.66667 100.00000
##
## stage 3 0 0.00000 1 0 0.00000 0.00000
## 2 0 0.00000 0.00000
## 3 0 0.00000 0.00000
## 4 3 100.00000 100.00000
##
## ---------------------------------------------------------------------------------------
## sex: f
## ascites: 1
## hepato: 1
## var n miss p.miss level freq percent cum.percent
## trt 16 0 0.00000 1 10 62.50000 62.50000
## 2 6 37.50000 100.00000
##
## ascites 16 0 0.00000 0 0 0.00000 0.00000
## 1 16 100.00000 100.00000
##
## spiders 16 0 0.00000 0 5 31.25000 31.25000
## 1 11 68.75000 100.00000
##
## edema 16 0 0.00000 0 3 18.75000 18.75000
## 0.5 4 25.00000 43.75000
## 1 9 56.25000 100.00000
##
## stage 16 0 0.00000 1 0 0.00000 0.00000
## 2 2 12.50000 12.50000
## 3 0 0.00000 12.50000
## 4 14 87.50000 100.00000
##
##
## p-values
## pApprox pExact
## trt NaN 2.142e-01
## ascites NaN 2.124e-36
## spiders NaN NA
## edema NaN NA
## stage NaN NA
## print method by default
print(catTable)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## format
print(catTable, format = "fp")
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
print(catTable, format = "f")
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 6 59 - 2 7
## ascites = 1 0 0 - 5 0
## spiders = 1 1 21 - 1 2
## edema -
## 0 13 123 - 2 15
## 0.5 1 8 - 0 3
## 1 1 1 - 3 0
## stage -
## 1 3 13 - 0 0
## 2 3 45 - 0 3
## 3 7 59 - 1 5
## 4 2 15 - 4 10
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 72 2 6 NaN
## ascites = 1 0 3 16 NaN
## spiders = 1 53 1 11 NaN
## edema NaN
## 0 106 1 3
## 0.5 13 0 4
## 1 4 2 9
## stage NaN
## 1 0 0 0
## 2 14 0 2
## 3 48 0 0
## 4 61 3 14
print(catTable, format = "p")
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 40.0 44.7 - 40.0 38.9
## ascites = 1 (%) 0.0 0.0 - 100.0 0.0
## spiders = 1 (%) 6.7 15.9 - 20.0 11.1
## edema (%) -
## 0 86.7 93.2 - 40.0 83.3
## 0.5 6.7 6.1 - 0.0 16.7
## 1 6.7 0.8 - 60.0 0.0
## stage (%) -
## 1 20.0 9.8 - 0.0 0.0
## 2 20.0 34.1 - 0.0 16.7
## 3 46.7 44.7 - 20.0 27.8
## 4 13.3 11.4 - 80.0 55.6
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 58.5 66.7 37.5 NaN
## ascites = 1 (%) 0.0 100.0 100.0 NaN
## spiders = 1 (%) 43.1 33.3 68.8 NaN
## edema (%) NaN
## 0 86.2 33.3 18.8
## 0.5 10.6 0.0 25.0
## 1 3.3 66.7 56.2
## stage (%) NaN
## 1 0.0 0.0 0.0
## 2 11.4 0.0 12.5
## 3 39.0 0.0 0.0
## 4 49.6 100.0 87.5
print(catTable, format = "pf")
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 % (freq) 40.0 (6) 44.7 (59) - 40.0 (2) 38.9 (7)
## ascites = 1 % (freq) 0.0 (0) 0.0 (0) - 100.0 (5) 0.0 (0)
## spiders = 1 % (freq) 6.7 (1) 15.9 (21) - 20.0 (1) 11.1 (2)
## edema % (freq) -
## 0 86.7 (13) 93.2 (123) - 40.0 (2) 83.3 (15)
## 0.5 6.7 ( 1) 6.1 ( 8) - 0.0 (0) 16.7 ( 3)
## 1 6.7 ( 1) 0.8 ( 1) - 60.0 (3) 0.0 ( 0)
## stage % (freq) -
## 1 20.0 (3) 9.8 (13) - 0.0 (0) 0.0 ( 0)
## 2 20.0 (3) 34.1 (45) - 0.0 (0) 16.7 ( 3)
## 3 46.7 (7) 44.7 (59) - 20.0 (1) 27.8 ( 5)
## 4 13.3 (2) 11.4 (15) - 80.0 (4) 55.6 (10)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 % (freq) 58.5 (72) 66.7 (2) 37.5 (6) NaN
## ascites = 1 % (freq) 0.0 (0) 100.0 (3) 100.0 (16) NaN
## spiders = 1 % (freq) 43.1 (53) 33.3 (1) 68.8 (11) NaN
## edema % (freq) NaN
## 0 86.2 (106) 33.3 (1) 18.8 (3)
## 0.5 10.6 ( 13) 0.0 (0) 25.0 (4)
## 1 3.3 ( 4) 66.7 (2) 56.2 (9)
## stage % (freq) NaN
## 1 0.0 ( 0) 0.0 (0) 0.0 ( 0)
## 2 11.4 (14) 0.0 (0) 12.5 ( 2)
## 3 39.0 (48) 0.0 (0) 0.0 ( 0)
## 4 49.6 (61) 100.0 (3) 87.5 (14)
## digits
print(catTable, digits = 5)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## exact
print(catTable, exact = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) 0.214 exact
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) <0.001 exact
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NA exact
## edema (%) NA exact
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NA exact
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## Partially exact
print(catTable, exact = exactVars)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) <0.001 exact
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NA exact
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## quote
print(catTable, quote = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## "Stratified by sex:ascites:hepato"
## "" "m:0:0" "f:0:0" "m:1:0" "f:1:0" "m:0:1"
## "n" "15" "132" "0" "5" "18"
## "time (mean (sd))" "2412.33 (1422.19)" "2375.19 (1020.62)" "-" "1130.20 (1382.64)" "1702.78 (1198.55)"
## "age (mean (sd))" " 51.07 (12.11)" " 48.41 (10.22)" "-" " 64.57 (10.52)" " 58.60 (9.18)"
## "bili (mean (sd))" " 2.24 (1.31)" " 1.61 (2.40)" "-" " 7.14 (7.65)" " 3.37 (2.61)"
## "chol (mean (sd))" " 360.33 (164.98)" " 336.99 (158.86)" "-" " 253.00 (86.81)" " 382.61 (194.31)"
## "albumin (mean (sd))" " 3.72 (0.44)" " 3.67 (0.34)" "-" " 2.85 (0.54)" " 3.59 (0.34)"
## "copper (mean (sd))" " 166.27 (107.94)" " 65.56 (56.66)" "-" " 112.40 (72.72)" " 142.44 (82.94)"
## "alk.phos (mean (sd))" "2839.41 (3424.63)" "1634.45 (1732.65)" "-" "1257.60 (416.42)" "1822.89 (1260.72)"
## "ast (mean (sd))" " 125.02 (43.62)" " 111.35 (52.10)" "-" " 170.83 (118.75)" " 124.49 (49.03)"
## "trig (mean (sd))" " 132.20 (55.55)" " 110.70 (52.29)" "-" " 138.50 (67.34)" " 138.00 (49.34)"
## "platelet (mean (sd))" " 246.57 (88.70)" " 287.36 (87.74)" "-" " 192.80 (116.54)" " 240.94 (86.30)"
## "protime (mean (sd))" " 11.07 (1.19)" " 10.42 (0.89)" "-" " 12.02 (1.16)" " 10.82 (0.63)"
## "trt = 2 (%)" " 6 (40.0) " " 59 (44.7) " "-" " 2 (40.0) " " 7 (38.9) "
## "ascites = 1 (%)" " 0 (0.0) " " 0 (0.0) " "-" " 5 (100.0) " " 0 (0.0) "
## "spiders = 1 (%)" " 1 (6.7) " " 21 (15.9) " "-" " 1 (20.0) " " 2 (11.1) "
## "edema (%)" " " " " "-" " " " "
## " 0" " 13 (86.7) " " 123 (93.2) " "-" " 2 (40.0) " " 15 (83.3) "
## " 0.5" " 1 ( 6.7) " " 8 ( 6.1) " "-" " 0 ( 0.0) " " 3 (16.7) "
## " 1" " 1 ( 6.7) " " 1 ( 0.8) " "-" " 3 (60.0) " " 0 ( 0.0) "
## "stage (%)" " " " " "-" " " " "
## " 1" " 3 (20.0) " " 13 ( 9.8) " "-" " 0 ( 0.0) " " 0 ( 0.0) "
## " 2" " 3 (20.0) " " 45 (34.1) " "-" " 0 ( 0.0) " " 3 (16.7) "
## " 3" " 7 (46.7) " " 59 (44.7) " "-" " 1 (20.0) " " 5 (27.8) "
## " 4" " 2 (13.3) " " 15 (11.4) " "-" " 4 (80.0) " " 10 (55.6) "
## "Stratified by sex:ascites:hepato"
## "" "f:0:1" "m:1:1" "f:1:1" "p" "test"
## "n" "123" "3" " 16" "" ""
## "time (mean (sd))" "1838.28 (1007.36)" "1057.67 (799.01)" " 668.25 (805.64)" "<0.001" ""
## "age (mean (sd))" " 48.71 (9.71)" " 67.52 (11.11)" " 54.92 (8.91)" "<0.001" ""
## "bili (mean (sd))" " 3.97 (4.84)" " 3.07 (3.50)" " 10.97 (7.80)" "<0.001" ""
## "chol (mean (sd))" " 411.14 (298.67)" " 197.00 (65.05)" " 364.50 (247.72)" " 0.210" ""
## "albumin (mean (sd))" " 3.43 (0.39)" " 2.79 (0.45)" " 3.02 (0.45)" "<0.001" ""
## "copper (mean (sd))" " 104.11 (85.01)" " 165.33 (186.51)" " 184.13 (125.71)" "<0.001" ""
## "alk.phos (mean (sd))" "2259.90 (2445.16)" " 941.00 (195.41)" "2522.41 (2043.39)" " 0.109" ""
## "ast (mean (sd))" " 130.47 (60.16)" " 91.87 (58.65)" " 140.36 (43.22)" " 0.032" ""
## "trig (mean (sd))" " 127.48 (60.14)" " 101.50 (74.25)" " 193.71 (145.19)" " 0.001" ""
## "platelet (mean (sd))" " 253.06 (97.99)" " 155.33 (58.00)" " 197.38 (94.71)" "<0.001" ""
## "protime (mean (sd))" " 10.79 (0.96)" " 11.80 (1.22)" " 11.79 (1.09)" "<0.001" ""
## "trt = 2 (%)" " 72 (58.5) " " 2 (66.7) " " 6 (37.5) " " NaN" ""
## "ascites = 1 (%)" " 0 (0.0) " " 3 (100.0) " " 16 (100.0) " " NaN" ""
## "spiders = 1 (%)" " 53 (43.1) " " 1 (33.3) " " 11 (68.8) " " NaN" ""
## "edema (%)" " " " " " " " NaN" ""
## " 0" " 106 (86.2) " " 1 (33.3) " " 3 (18.8) " "" ""
## " 0.5" " 13 (10.6) " " 0 ( 0.0) " " 4 (25.0) " "" ""
## " 1" " 4 ( 3.3) " " 2 (66.7) " " 9 (56.2) " "" ""
## "stage (%)" " " " " " " " NaN" ""
## " 1" " 0 ( 0.0) " " 0 ( 0.0) " " 0 ( 0.0) " "" ""
## " 2" " 14 (11.4) " " 0 ( 0.0) " " 2 (12.5) " "" ""
## " 3" " 48 (39.0) " " 0 ( 0.0) " " 0 ( 0.0) " "" ""
## " 4" " 61 (49.6) " " 3 (100.0) " " 14 (87.5) " "" ""
## No test
print(catTable, test = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## pDigits
print(catTable, pDigits = 5)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
## showAllLevel
print(catTable, showAllLevels = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## level m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt (%) 1 9 (60.0) 73 (55.3) - 3 (60.0) 11 (61.1)
## 2 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites (%) 0 15 (100.0) 132 (100.0) - 0 ( 0.0) 18 (100.0)
## 1 0 ( 0.0) 0 ( 0.0) - 5 (100.0) 0 ( 0.0)
## spiders (%) 0 14 (93.3) 111 (84.1) - 4 (80.0) 16 (88.9)
## 1 1 ( 6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt (%) 51 (41.5) 1 (33.3) 10 (62.5) NaN
## 72 (58.5) 2 (66.7) 6 (37.5)
## ascites (%) 123 (100.0) 0 ( 0.0) 0 ( 0.0) NaN
## 0 ( 0.0) 3 (100.0) 16 (100.0)
## spiders (%) 70 (56.9) 2 (66.7) 5 (31.2) NaN
## 53 (43.1) 1 (33.3) 11 (68.8)
## edema (%) 106 (86.2) 1 (33.3) 3 (18.8) NaN
## 13 (10.6) 0 ( 0.0) 4 (25.0)
## 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) 0 ( 0.0) 0 ( 0.0) 0 ( 0.0) NaN
## 14 (11.4) 0 ( 0.0) 2 (12.5)
## 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 61 (49.6) 3 (100.0) 14 (87.5)
## explain
print(catTable, explain = FALSE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1 f:0:1
## n 15 132 0 5 18 123
## time 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55) 1838.28 (1007.36)
## age 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18) 48.71 (9.71)
## bili 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61) 3.97 (4.84)
## chol 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31) 411.14 (298.67)
## albumin 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34) 3.43 (0.39)
## copper 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94) 104.11 (85.01)
## alk.phos 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72) 2259.90 (2445.16)
## ast 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03) 130.47 (60.16)
## trig 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34) 127.48 (60.14)
## platelet 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30) 253.06 (97.99)
## protime 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63) 10.79 (0.96)
## trt = 2 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9) 72 (58.5)
## ascites = 1 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0) 0 (0.0)
## spiders = 1 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1) 53 (43.1)
## edema -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3) 106 (86.2)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7) 13 (10.6)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0) 4 ( 3.3)
## stage -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7) 14 (11.4)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8) 48 (39.0)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6) 61 (49.6)
## Stratified by sex:ascites:hepato
## m:1:1 f:1:1 p test
## n 3 16
## time 1057.67 (799.01) 668.25 (805.64) <0.001
## age 67.52 (11.11) 54.92 (8.91) <0.001
## bili 3.07 (3.50) 10.97 (7.80) <0.001
## chol 197.00 (65.05) 364.50 (247.72) 0.210
## albumin 2.79 (0.45) 3.02 (0.45) <0.001
## copper 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast 91.87 (58.65) 140.36 (43.22) 0.032
## trig 101.50 (74.25) 193.71 (145.19) 0.001
## platelet 155.33 (58.00) 197.38 (94.71) <0.001
## protime 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 2 (66.7) 6 (37.5) NaN
## ascites = 1 3 (100.0) 16 (100.0) NaN
## spiders = 1 1 (33.3) 11 (68.8) NaN
## edema NaN
## 0 1 (33.3) 3 (18.8)
## 0.5 0 ( 0.0) 4 (25.0)
## 1 2 (66.7) 9 (56.2)
## stage NaN
## 1 0 ( 0.0) 0 ( 0.0)
## 2 0 ( 0.0) 2 (12.5)
## 3 0 ( 0.0) 0 ( 0.0)
## 4 3 (100.0) 14 (87.5)
## CrossTable
print(catTable, CrossTable = TRUE)
## Warning: no non-missing arguments to max; returning -Inf
## Stratified by sex:ascites:hepato
## m:0:0 f:0:0 m:1:0 f:1:0 m:0:1
## n 15 132 0 5 18
## time (mean (sd)) 2412.33 (1422.19) 2375.19 (1020.62) - 1130.20 (1382.64) 1702.78 (1198.55)
## age (mean (sd)) 51.07 (12.11) 48.41 (10.22) - 64.57 (10.52) 58.60 (9.18)
## bili (mean (sd)) 2.24 (1.31) 1.61 (2.40) - 7.14 (7.65) 3.37 (2.61)
## chol (mean (sd)) 360.33 (164.98) 336.99 (158.86) - 253.00 (86.81) 382.61 (194.31)
## albumin (mean (sd)) 3.72 (0.44) 3.67 (0.34) - 2.85 (0.54) 3.59 (0.34)
## copper (mean (sd)) 166.27 (107.94) 65.56 (56.66) - 112.40 (72.72) 142.44 (82.94)
## alk.phos (mean (sd)) 2839.41 (3424.63) 1634.45 (1732.65) - 1257.60 (416.42) 1822.89 (1260.72)
## ast (mean (sd)) 125.02 (43.62) 111.35 (52.10) - 170.83 (118.75) 124.49 (49.03)
## trig (mean (sd)) 132.20 (55.55) 110.70 (52.29) - 138.50 (67.34) 138.00 (49.34)
## platelet (mean (sd)) 246.57 (88.70) 287.36 (87.74) - 192.80 (116.54) 240.94 (86.30)
## protime (mean (sd)) 11.07 (1.19) 10.42 (0.89) - 12.02 (1.16) 10.82 (0.63)
## trt = 2 (%) 6 (40.0) 59 (44.7) - 2 (40.0) 7 (38.9)
## ascites = 1 (%) 0 (0.0) 0 (0.0) - 5 (100.0) 0 (0.0)
## spiders = 1 (%) 1 (6.7) 21 (15.9) - 1 (20.0) 2 (11.1)
## edema (%) -
## 0 13 (86.7) 123 (93.2) - 2 (40.0) 15 (83.3)
## 0.5 1 ( 6.7) 8 ( 6.1) - 0 ( 0.0) 3 (16.7)
## 1 1 ( 6.7) 1 ( 0.8) - 3 (60.0) 0 ( 0.0)
## stage (%) -
## 1 3 (20.0) 13 ( 9.8) - 0 ( 0.0) 0 ( 0.0)
## 2 3 (20.0) 45 (34.1) - 0 ( 0.0) 3 (16.7)
## 3 7 (46.7) 59 (44.7) - 1 (20.0) 5 (27.8)
## 4 2 (13.3) 15 (11.4) - 4 (80.0) 10 (55.6)
## Stratified by sex:ascites:hepato
## f:0:1 m:1:1 f:1:1 p test
## n 123 3 16
## time (mean (sd)) 1838.28 (1007.36) 1057.67 (799.01) 668.25 (805.64) <0.001
## age (mean (sd)) 48.71 (9.71) 67.52 (11.11) 54.92 (8.91) <0.001
## bili (mean (sd)) 3.97 (4.84) 3.07 (3.50) 10.97 (7.80) <0.001
## chol (mean (sd)) 411.14 (298.67) 197.00 (65.05) 364.50 (247.72) 0.210
## albumin (mean (sd)) 3.43 (0.39) 2.79 (0.45) 3.02 (0.45) <0.001
## copper (mean (sd)) 104.11 (85.01) 165.33 (186.51) 184.13 (125.71) <0.001
## alk.phos (mean (sd)) 2259.90 (2445.16) 941.00 (195.41) 2522.41 (2043.39) 0.109
## ast (mean (sd)) 130.47 (60.16) 91.87 (58.65) 140.36 (43.22) 0.032
## trig (mean (sd)) 127.48 (60.14) 101.50 (74.25) 193.71 (145.19) 0.001
## platelet (mean (sd)) 253.06 (97.99) 155.33 (58.00) 197.38 (94.71) <0.001
## protime (mean (sd)) 10.79 (0.96) 11.80 (1.22) 11.79 (1.09) <0.001
## trt = 2 (%) 72 (58.5) 2 (66.7) 6 (37.5) NaN
## ascites = 1 (%) 0 (0.0) 3 (100.0) 16 (100.0) NaN
## spiders = 1 (%) 53 (43.1) 1 (33.3) 11 (68.8) NaN
## edema (%) NaN
## 0 106 (86.2) 1 (33.3) 3 (18.8)
## 0.5 13 (10.6) 0 ( 0.0) 4 (25.0)
## 1 4 ( 3.3) 2 (66.7) 9 (56.2)
## stage (%) NaN
## 1 0 ( 0.0) 0 ( 0.0) 0 ( 0.0)
## 2 14 (11.4) 0 ( 0.0) 2 (12.5)
## 3 48 (39.0) 0 ( 0.0) 0 ( 0.0)
## 4 61 (49.6) 3 (100.0) 14 (87.5)
Behaviors on wrong data format
### Behaviors on wrong data format
## Not a data frame
tableOne <- CreateTableOne(vars = vars, strata = strata, data = "dataFrame")
## Error: The data argument needs to be a data frame (no quote).
## Invalid variables
tableOne <- CreateTableOne(vars = c(vars,"wrong_var1","wrong_var2"), strata = strata, data = dataFrame)
## Warning: The data frame does not have: wrong_var1 wrong_var2 Dropped
tableOne
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## Invalid variables only
tableOne <- CreateTableOne(vars = c("wrong_var1","wrong_var2"), strata = strata, data = dataFrame)
## Warning: The data frame does not have: wrong_var1 wrong_var2 Dropped
## Error: No valid variables.
## Duplication
tableOne <- CreateTableOne(vars = c(vars,"time","age"), strata = strata, data = dataFrame)
## Warning: The data frame does not have: time.1 age.1 Dropped
tableOne
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## No stratifying variables
tableOne <- CreateTableOne(vars = vars, strata = "status3", data = dataFrame)
## Warning: The data frame does not have: status3 Dropped
## Error: None of the stratifying variables are present in the data frame.
## Only mean in the object
tableOne <- CreateTableOne(vars = vars, strata = strata, data = dataFrame, funcNames = "mean")
## Error: unused argument (funcNames = "mean")
tableOne
## Stratified by status
## 0 1 2 p test
## n 232 25 161
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## bili (mean (sd)) 1.58 (1.91) 3.56 (3.60) 5.54 (5.84) <0.001
## chol (mean (sd)) 326.54 (165.80) 439.50 (335.54) 415.75 (275.03) 0.003
## albumin (mean (sd)) 3.59 (0.36) 3.49 (0.46) 3.36 (0.47) <0.001
## copper (mean (sd)) 66.61 (57.05) 124.00 (100.08) 135.41 (98.50) <0.001
## alk.phos (mean (sd)) 1578.13 (1633.07) 1535.21 (837.75) 2594.35 (2677.11) <0.001
## ast (mean (sd)) 107.29 (52.79) 130.12 (36.95) 141.93 (58.38) <0.001
## trig (mean (sd)) 111.79 (48.28) 133.94 (70.55) 140.49 (79.26) 0.001
## platelet (mean (sd)) 261.16 (88.61) 309.60 (102.65) 242.49 (107.88) 0.004
## protime (mean (sd)) 10.45 (0.92) 10.36 (0.54) 11.19 (1.05) <0.001
## trt = 2 (%) 85 (50.6) 9 (47.4) 60 (48.0) 0.894
## ascites = 1 (%) 1 (0.6) 0 (0.0) 23 (18.4) <0.001
## spiders = 1 (%) 33 (19.6) 5 (26.3) 52 (41.6) <0.001
## edema (%) <0.001
## 0 216 (93.1) 22 (88.0) 116 (72.0)
## 0.5 15 ( 6.5) 3 (12.0) 26 (16.1)
## 1 1 ( 0.4) 0 ( 0.0) 19 (11.8)
## stage (%) <0.001
## 1 19 ( 8.3) 0 ( 0.0) 2 ( 1.3)
## 2 64 (27.8) 5 (20.0) 23 (14.6)
## 3 97 (42.2) 10 (40.0) 48 (30.6)
## 4 50 (21.7) 10 (40.0) 84 (53.5)
## time (mean (sd)) 2333.16 (994.66) 1546.20 (753.07) 1376.93 (1049.23) <0.001
## age (mean (sd)) 49.51 (10.43) 41.69 (6.33) 53.92 (9.81) <0.001
## Very small strata
tableOne <- CreateTableOne(vars = vars, strata = smallStrata, data = smallDataFrame)
summary(tableOne)
##
## ### Summary of continuous variables ###
##
## edema: 0
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 1 0 0 4500 NA 4500 4500 4500 4500 4500 NaN NaN
## age 1 0 0 56 NA 56 56 56 56 56 NaN NaN
## bili 1 0 0 1 NA 1 1 1 1 1 NaN NaN
## chol 1 0 0 302 NA 302 302 302 302 302 NaN NaN
## albumin 1 0 0 4 NA 4 4 4 4 4 NaN NaN
## copper 1 0 0 54 NA 54 54 54 54 54 NaN NaN
## alk.phos 1 0 0 7395 NA 7395 7395 7395 7395 7395 NaN NaN
## ast 1 0 0 114 NA 114 114 114 114 114 NaN NaN
## trig 1 0 0 88 NA 88 88 88 88 88 NaN NaN
## platelet 1 0 0 221 NA 221 221 221 221 221 NaN NaN
## protime 1 0 0 11 NA 11 11 11 11 11 NaN NaN
## ---------------------------------------------------------------------------------------
## edema: 0.5
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 2 0 0 1468 645.6 1468 1240 1697 1012 1925 NaN NaN
## age 2 0 0 62 10.8 62 59 66 55 70 NaN NaN
## bili 2 0 0 2 0.3 2 1 2 1 2 NaN NaN
## chol 2 0 0 210 48.1 210 193 227 176 244 NaN NaN
## albumin 2 0 0 3 0.7 3 3 3 3 3 NaN NaN
## copper 2 0 0 137 103.2 137 100 174 64 210 NaN NaN
## alk.phos 2 0 0 3319 3963.9 3319 1917 4720 516 6122 NaN NaN
## ast 2 0 0 78 25.1 78 69 87 61 96 NaN NaN
## trig 2 0 0 74 26.2 74 64 83 55 92 NaN NaN
## platelet 2 0 0 167 22.6 167 159 175 151 183 NaN NaN
## protime 2 0 0 11 1.2 11 11 12 10 12 NaN NaN
## ---------------------------------------------------------------------------------------
## edema: 1
## n miss p.miss mean sd median p25 p75 min max skew kurt
## time 3 0 0 556 598.4 400 226 808 51.0 1217 1.1 NaN
## age 3 0 0 62 7.7 59 57 65 56.2 71 1.5 NaN
## bili 3 0 0 9 7.4 13 7 14 0.8 14 -1.6 NaN
## chol 3 1 33 230 43.1 230 215 246 200.0 261 NaN NaN
## albumin 3 0 0 3 0.2 3 2 3 2.3 3 -1.1 NaN
## copper 3 0 0 113 61.1 140 92 148 43.0 156 -1.6 NaN
## alk.phos 3 0 0 1121 525.4 918 823 1318 728.0 1718 1.5 NaN
## ast 3 0 0 119 41.6 138 104 143 71.0 147 -1.6 NaN
## trig 3 1 33 158 20.5 158 150 165 143.0 172 NaN NaN
## platelet 3 0 0 216 76.4 190 173 246 156.0 302 1.4 NaN
## protime 3 0 0 12 0.6 12 11 12 11.0 12 0.5 NaN
##
## p-values
## pNormal pNonNormal
## time NA 0.2128
## age NA 0.8071
## bili NA 0.6514
## chol NA 0.3012
## albumin NA 0.3041
## copper NA 0.5385
## alk.phos NA 0.3425
## ast NA 0.3767
## trig NA 0.2231
## platelet NA 0.3425
## protime NA 0.5013
##
## =======================================================================================
##
## ### Summary of categorical variables ###
##
## edema: 0
## var n miss p.miss level freq percent cum.percent
## trt 1 0 0.0 1 1 100.0 100.0
## 2 0 0.0 100.0
##
## ascites 1 0 0.0 0 1 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 1 0 0.0 0 0 0.0 0.0
## 1 1 100.0 100.0
##
## edema 1 0 0.0 0 1 100.0 100.0
## 0.5 0 0.0 100.0
## 1 0 0.0 100.0
##
## stage 1 0 0.0 3 1 100.0 100.0
## 4 0 0.0 100.0
##
## ---------------------------------------------------------------------------------------
## edema: 0.5
## var n miss p.miss level freq percent cum.percent
## trt 2 0 0.0 1 2 100.0 100.0
## 2 0 0.0 100.0
##
## ascites 2 0 0.0 0 2 100.0 100.0
## 1 0 0.0 100.0
##
## spiders 2 0 0.0 0 1 50.0 50.0
## 1 1 50.0 100.0
##
## edema 2 0 0.0 0 0 0.0 0.0
## 0.5 2 100.0 100.0
## 1 0 0.0 100.0
##
## stage 2 0 0.0 3 0 0.0 0.0
## 4 2 100.0 100.0
##
## ---------------------------------------------------------------------------------------
## edema: 1
## var n miss p.miss level freq percent cum.percent
## trt 3 0 0.0 1 1 33.3 33.3
## 2 2 66.7 100.0
##
## ascites 3 0 0.0 0 0 0.0 0.0
## 1 3 100.0 100.0
##
## spiders 3 0 0.0 0 1 33.3 33.3
## 1 2 66.7 100.0
##
## edema 3 0 0.0 0 0 0.0 0.0
## 0.5 0 0.0 0.0
## 1 3 100.0 100.0
##
## stage 3 0 0.0 3 0 0.0 0.0
## 4 3 100.0 100.0
##
##
## p-values
## pApprox pExact
## trt 0.22313 0.60000
## ascites 0.04979 0.10000
## spiders 0.68729 1.00000
## edema 0.01735 0.01667
## stage 0.04979 0.16667
tableOne
## Stratified by edema
## 0 0.5 1 p test
## n 1 2 3
## time (mean (sd)) 4500.00 (NA) 1468.50 (645.59) 556.00 (598.45) NA
## age (mean (sd)) 56.45 (NA) 62.41 (10.84) 61.85 (7.65) NA
## bili (mean (sd)) 1.10 (NA) 1.60 (0.28) 9.30 (7.42) NA
## chol (mean (sd)) 302.00 (NA) 210.00 (48.08) 230.50 (43.13) NA
## albumin (mean (sd)) 4.14 (NA) 3.01 (0.66) 2.54 (0.24) NA
## copper (mean (sd)) 54.00 (NA) 137.00 (103.24) 113.00 (61.15) NA
## alk.phos (mean (sd)) 7394.80 (NA) 3318.90 (3963.90) 1121.33 (525.39) NA
## ast (mean (sd)) 113.52 (NA) 78.36 (25.08) 118.73 (41.60) NA
## trig (mean (sd)) 88.00 (NA) 73.50 (26.16) 157.50 (20.51) NA
## platelet (mean (sd)) 221.00 (NA) 167.00 (22.63) 216.00 (76.39) NA
## protime (mean (sd)) 10.60 (NA) 11.15 (1.20) 11.57 (0.60) NA
## trt = 2 (%) 0 (0.0) 0 (0.0) 2 (66.7) 0.223
## ascites = 1 (%) 0 (0.0) 0 (0.0) 3 (100.0) 0.050
## spiders = 1 (%) 1 (100.0) 1 (50.0) 2 (66.7) 0.687
## edema (%) 0.017
## 0 1 (100.0) 0 ( 0.0) 0 ( 0.0)
## 0.5 0 ( 0.0) 2 (100.0) 0 ( 0.0)
## 1 0 ( 0.0) 0 ( 0.0) 3 (100.0)
## stage = 4 (%) 0 (0.0) 2 (100.0) 3 (100.0) 0.050
Check environment
## List objects
ls()
## [1] "catTable" "catVars" "contVars" "dataFrame" "exactVars" "matObj"
## [7] "nonNormalVars" "pbc" "pbcseq" "showMessage" "showWarning" "smallDataFrame"
## [13] "smallStrata" "strata" "strataThreeVars" "strataTwoVars" "tableOne" "vars"
## Exported objects
getNamespaceExports("tableone")
## [1] "CreateCatTable" "CreateContTable" "CreateTableOne"
## [4] "ModuleConvertNonNormal" "ModuleConvertNormal" "ModuleCreateStrataNames"
## [7] "ModuleCreateStrataVarAsFactor" "ModuleCreateStrataVarName" "ModuleCreateTableForOneVar"
## [10] "ModuleHandleDefaultOrAlternative" "ModulePickAndFormatPValues" "ModuleQuoteAndPrintMat"
## [13] "ModuleRemoveSpaces" "ModuleReturnDimHeaders" "ModuleReturnFalseIfNoStrata"
## [16] "ModuleReturnStrata" "ModuleReturnVarsExist" "ModuleSasKurtosis"
## [19] "ModuleSasSkewness" "ModuleStopIfNotDataFrame" "ModuleStopIfNoVarsLeft"
## [22] "ModuleTestSafe" "ModuleTryCatchWE" "print.CatTable"
## [25] "print.ContTable" "print.TableOne" "ShowRegTable"
## [28] "summary.CatTable" "summary.ContTable" "summary.TableOne"
## List packages
sessionInfo()
## R version 3.1.0 (2014-04-10)
## Platform: x86_64-apple-darwin10.8.0 (64-bit)
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## attached base packages:
## [1] splines stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] survival_2.37-7 tableone_0.5.0 testthat_0.8.1 devtools_1.5 knitr_1.5 R.utils_1.29.8
## [7] R.oo_1.18.0 R.methodsS3_1.6.1
##
## loaded via a namespace (and not attached):
## [1] class_7.3-10 digest_0.6.4 e1071_1.6-3 evaluate_0.5.3 formatR_0.10 gdata_2.13.3
## [7] gmodels_2.15.4.1 gtools_3.3.1 httr_0.3 MASS_7.3-31 memoise_0.1 parallel_3.1.0
## [13] RCurl_1.95-4.1 stringr_0.6.2 tools_3.1.0 whisker_0.3-2