10 de febrero de 2016
Secuencias
Secuencias
- Una secuencia es una lista ordenada de objetos o eventos
- Secuencia Biológica
- Una molécula de ácido nucleico o proteína
Análisis de Secuencias
- Proceso de aplicar métodos analíticos a una secuencia de ADN, ARN o péptido para entender sus:
- características
- función
- estructura
- evolución
- Metodologías utilizadas
- Alineamiento de secuencias
- Búsquedas en bases de datos
- otras
Análisis de Secuencias
Análisis de Secuencias
- En biología molecular tenemos estos temas de estudio:
- Comparación de secuencias para determinar similaridad, inferir si están relacionadas (si son homólogas)
Análisis de Secuencias
- En biología molecular tenemos estos temas de estudio:
- Identificación de características intrínsecas de la secuencia
- Sitios activos
- Sitios de modificaciones post translacionales
- Estructura de genes
- Frames de lectura (reading frames) o codones, dividir la secuencia de nucleótidos de una molécula de ácido nucleico en un conjunto consecutivo (sin traslape) de tripetas. Estos son: aminoácidos, señales de STOP en la traducción.
- Distribución de intrones, exones y elementos regulatorios
- Identificación de características intrínsecas de la secuencia
Análisis de Secuencias
Análisis de Secuencias
- En biología molecular tenemos estos temas de estudio:
- Identificación de diferencias y variaciones en las secuencias
- Puntos de mutaciones
- Polimorfismo de nucleótidos simples (SNP - Single Nucleotide Polymorphism) para obtener un marcador genético
- Identificación de diferencias y variaciones en las secuencias
Análisis de Secuencias
Análisis de Secuencias
- En biología molecular tenemos estos temas de estudio:
- Revelar la evolución y diversidad genética de las secuencias y organismos
Análisis de Secuencias
Análisis de Secuencias
- En biología molecular tenemos estos temas de estudio:
- Identificar la estructura molecular a partir de una secuencia
Análisis de Secuencias
Nucleótido
- Uno de los componentes estructurales o bloques de construcción del ADN y ARN.
- Consiste de una base (adenine, thymine, guanine, cytosine) más una molécula de azucar y un ácido de fosfórico.
Nucleótido
Aminoácido
- Bloque químico de construcción de las proteinas
- Hay 20 aminoácidos
Consultar información sobre Aminoácidos:
Aminoácido
Aminoácido
Aminoácido
Aminoácido
Aminoácido
Proteina
- Moléculas largas que consisten de una o más caenas de aminoácidos
- Tienen diferentes funciones sobre organismos vivos
- reacciones metabólicas catalizadoras
- replicación del ADN
- responder a estímulos
- transportar moléculas de una ubicación a otra
- Tienen diferentes funciones sobre organismos vivos
- A una cadena lineal de aminoácidos se le conoce como polipéptido
- Los polipéptidos cortos (con 20-30 aminoácidos) ya no se consideran proteinas y se les conoce como péptidos
Péptido
- Son cadenas cortas de aminoácidos
- Se distinguen de las proteínas por su tamaño
- Contienen aprox. 50 o menos aminoácidos
IUPAC
- Formada en 1919 por químicos de la industria y la academia
- International Union of Pure and Applied Chemistry
- Nomenclatura
- Estandarización
- Pesos, medidas, nombres y símbolos
IUPAC
Código de Ácidos Nucleicos-base
- Cuando trabajamos con secuencias utilizamos el código IUPAC
- Representamos con una letra diferentes combinaciones de nuclótidos
- Al alinear secuencias, una base podría sufrir mutaciones y aparecer como A algunas ocasiones y como C en otras. Con este código podemos representar esto con una sola letra
- Nos es muy útil para el macheo inexacto de secuencias
- Incluso representamos gaps
Código de Ácidos Nucleicos-base
Código Estándar de Letras de Aminoácidos
- También tenemos un código IUPAC para los Aminoácidos
- 20 letras
- Es un código estándar
Código Estándar de Letras de Aminoácidos
Conversión del Lenguaje Molecular al Lenguaje Alfanumérico
Unix Shell
- Interfaz de consola de comandos
- Conocida como el shell de Unix
- Intérprete de comandos
- Interfaz para comunicarnos con el núcleo del sistema operativo
- Se pueden crear scripts con múltiples comandos
Unix Shell
- Diferentes shells
- Bourne again shell, bash
- Bourne shell, sh
- CShell, csh, ya no tan utilizado por cuestiones de seguridad
- Korn shell, ksh
- t Shell, tcsh
Unix Shell
Unix Shell
Unix Shell
- Archivos de inicialización generales
- /etc/profile
- /etc/bashrc
Unix Shell
- Archivos de inicialización locales (personales)
- ~/.bash_profile
- Configuración de variables de ambiente de manera individual
- ~/.bash_login
- Configuraciones que se ejecutan solo al momento de login
- ~/.bash_profile
Unix Shell
- Archivos de inicialización locales (personales)
- ~/.profile
- Leido en ausencia de .bash_profile y .bash_login
- Definición de Alias y variables para programas específicos, se carga después de leer /etc/bashrc general
- ~/.bash_logout
- Instrucciones para el proceso de logout
- ~/.profile
Ejercicios de programación para análisis de secuencias
Contar Patrón
- ¿Cuántas veces aparece un patrón en una secuencia?
- Entrada:
- Secuencia
- Patrón
- Salida:
- Número de veces que aparece Patrón en Secuencia
Encontrar Patrón
- ¿Existe un Patrón en la Secuencia?
- Entrada:
- Secuencia
- Patrón
- Salida:
- True si se encuentra Patrón en Secuencia
- False si no se encuentra Patrón en Secuencia
Encontrar Posiciones de Patrón
- ¿En qué posiciones aparece un patrón en una secuencia?
- Entrada:
- Secuencia
- Patrón
- Salida:
- Posiciones en que aparece Patrón en Secuencia
Software de Análisis Bioinformático
Paquetes para Bioinformática
- SeqinR
- Biological Sequences in R
- Herramientas para obtener y analizar secuencias biológicas
- http://seqinr.r-forge.r-project.org/
- Bioconductor
Actividad
- Instalar seqinr en RStudio
- install.packages("seqinr")
- Cargar la librería de seqinr
- library(seqinr)
SeqinR
SeqinR
SeqinR - Formato Fasta
- Formato para almacenar datos biológicos
- ADN o proteínas
- Se utilizó primero con el programa FASTA para alineación de secuencias
- Inicia con una línea de descripción con un caracter ">"
- Continúa con líneas de secuencias
A06852 183 residues MPRLFSYLLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEE PQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSASKDSN LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR LC
SeqinR - Read Fasta
library(seqinr)
## Loading required package: ade4
setwd("/Users/jagonzalez/SpiderOak Hive/work/Courses/Bioinformatics/data")
list.files()
## [1] "biocond1.png" "UnAligSeq24606.txt"
my_fasta1 <- read.fasta("UnAligSeq24606.txt")
head(my_fasta1)
## $`24.6jsd1.Tut` ## [1] "t" "t" "g" "g" "a" "g" "a" "g" "t" "t" "t" "g" "a" "t" "c" "c" "t" ## [18] "g" "g" "c" "t" "c" "a" "g" "g" "a" "t" "g" "a" "a" "c" "g" "c" "t" ## [35] "g" "g" "c" "g" "g" "c" "g" "t" "g" "c" "c" "t" "a" "a" "t" "a" "c" ## [52] "a" "t" "g" "c" "a" "a" "g" "t" "c" "g" "a" "g" "c" "g" "a" "a" "t" ## [69] "g" "g" "a" "t" "t" "a" "a" "g" "a" "g" "c" "t" "t" "g" "c" "t" "c" ## [86] "t" "t" "a" "t" "g" "a" "a" "g" "t" "t" "a" "g" "c" "g" "g" "c" "g" ## [103] "g" "a" "c" "g" "g" "g" "t" "g" "a" "g" "t" "a" "a" "c" "a" "c" "g" ## [120] "t" "g" "g" "g" "t" "a" "a" "c" "c" "t" "g" "c" "c" "c" "a" "t" "a" ## [137] "a" "g" "a" "c" "t" "g" "g" "g" "a" "t" "a" "a" "c" "t" "c" "c" "g" ## [154] "g" "g" "a" "a" "a" "c" "c" "g" "g" "g" "g" "c" "t" "a" "a" "t" "a" ## [171] "c" "c" "g" "g" "a" "t" "a" "a" "c" "a" "t" "t" "t" "t" "g" "a" "a" ## [188] "c" "c" "g" "c" "a" "t" "g" "g" "t" "t" "c" "g" "a" "a" "a" "t" "t" ## [205] "g" "a" "a" "a" "g" "g" "c" "g" "g" "c" "t" "t" "c" "g" "g" "t" "c" ## [222] "g" "t" "c" "a" "c" "t" "t" "a" "t" "g" "g" "a" "t" "g" "g" "a" "c" ## [239] "c" "c" "g" "c" "g" "t" "c" "g" "c" "a" "t" "t" "a" "g" "c" "t" "a" ## [256] "g" "t" "t" "g" "g" "t" "g" "a" "g" "g" "t" "a" "a" "c" "g" "g" "c" ## [273] "t" "c" "a" "c" "c" "a" "a" "g" "g" "c" "a" "a" "c" "g" "a" "t" "g" ## [290] "c" "g" "t" "a" "g" "c" "c" "g" "a" "c" "c" "t" "g" "a" "g" "a" "g" ## [307] "g" "g" "t" "g" "a" "t" "c" "g" "g" "c" "c" "a" "c" "a" "c" "t" "g" ## [324] "g" "g" "a" "c" "t" "g" "a" "g" "a" "c" "a" "c" "g" "g" "c" "c" "c" ## [341] "a" "g" "a" "c" "t" "c" "c" "t" "a" "c" "g" "g" "g" "a" "g" "g" "c" ## [358] "a" "g" "c" "a" "g" "t" "a" "g" "g" "g" "a" "a" "t" "c" "t" "t" "c" ## [375] "c" "g" "c" "a" "a" "t" "g" "g" "a" "c" "g" "a" "a" "a" "g" "t" "c" ## [392] "t" "g" "a" "c" "g" "g" "a" "g" "c" "a" "a" "c" "g" "c" "c" "g" "c" ## [409] "g" "t" "g" "a" "g" "t" "g" "a" "t" "g" "a" "a" "g" "g" "c" "t" "t" ## [426] "t" "c" "g" "g" "g" "t" "c" "g" "t" "a" "a" "a" "a" "c" "t" "c" "t" ## [443] "g" "t" "t" "g" "t" "t" "a" "g" "g" "g" "a" "a" "g" "a" "a" "c" "a" ## [460] "a" "g" "t" "g" "c" "t" "a" "g" "t" "t" "g" "a" "a" "t" "a" "a" "g" ## [477] "c" "t" "g" "g" "c" "a" "c" "c" "t" "t" "g" "a" "c" "g" "g" "t" "a" ## [494] "c" "c" "t" "a" "a" "c" "c" "a" "g" "a" "a" "a" "g" "c" "c" "a" "c" ## [511] "g" "g" "c" "t" "a" "a" "c" "t" "a" "c" "g" "t" "g" "c" "c" "a" "g" ## [528] "c" "a" "g" "c" "c" "g" "c" "g" "g" "t" "a" "a" "t" "a" "c" "g" "t" ## [545] "a" "g" "g" "t" "g" "g" "c" "a" "a" "g" "c" "g" "t" "t" "a" "t" "c" ## [562] "c" "g" "g" "a" "a" "t" "t" "a" "t" "t" "g" "g" "g" "c" "g" "t" "a" ## [579] "a" "a" "g" "a" "a" "c" "g" "c" "g" "c" "a" "g" "g" "t" "g" "g" "t" ## [596] "t" "t" "c" "t" "t" "a" "a" "g" "t" "c" "t" "g" "a" "t" "g" "t" "g" ## [613] "a" "a" "a" "g" "c" "c" "c" "a" "c" "g" "g" "c" "t" "c" "a" "a" "c" ## [630] "c" "g" "t" "g" "g" "a" "g" "g" "g" "t" "c" "a" "t" "t" "g" "g" "a" ## [647] "a" "a" "c" "t" "g" "g" "g" "a" "g" "a" "c" "t" "t" "g" "a" "g" "t" ## [664] "g" "c" "a" "g" "a" "a" "g" "a" "g" "g" "a" "a" "a" "g" "t" "g" "g" ## [681] "a" "a" "t" "t" "c" "c" "a" "t" "g" "t" "g" "t" "a" "g" "c" "g" "g" ## [698] "t" "g" "a" "a" "a" "t" "g" "c" "g" "t" "a" "g" "a" "g" "a" "t" "a" ## [715] "t" "g" "g" "a" "g" "g" "a" "a" "c" "a" "c" "c" "a" "g" "t" "g" "g" ## [732] "c" "c" "c" "a" "g" "g" "c" "g" "a" "c" "t" "t" "t" "c" "t" "g" "g" ## [749] "t" "c" "t" "g" "t" "a" "a" "c" "t" "g" "a" "c" "a" "c" "t" "g" "a" ## [766] "g" "g" "c" "g" "c" "g" "a" "a" "a" "g" "c" "g" "t" "g" "g" "g" "g" ## [783] "a" "g" "c" "a" "a" "a" "c" "a" "g" "g" "a" "t" "t" "a" "g" "a" "t" ## [800] "a" "c" "c" "c" "t" "g" "g" "t" "a" "g" "t" "c" "c" "a" "c" "g" "c" ## [817] "c" "g" "t" "a" "a" "a" "c" "g" "a" "t" "g" "a" "g" "t" "g" "c" "t" ## [834] "a" "a" "g" "t" "g" "t" "t" "a" "g" "a" "g" "g" "g" "t" "t" "t" "c" ## [851] "c" "g" "c" "c" "c" "t" "t" "t" "a" "g" "t" "g" "c" "t" "g" "a" "a" ## [868] "g" "t" "t" "a" "a" "a" "g" "c" "a" "t" "t" "a" "a" "g" "c" "a" "c" ## [885] "t" "c" "c" "g" "c" "g" "t" "g" "t" "g" "g" "a" "g" "t" "a" "c" "g" ## [902] "g" "c" "c" "g" "c" "a" "a" "g" "g" "c" "t" "g" "a" "a" "a" "c" "t" ## [919] "c" "a" "a" "a" "g" "g" "a" "a" "t" "t" "g" "a" "c" "g" "g" "g" "g" ## [936] "g" "c" "c" "c" "g" "c" "a" "c" "a" "a" "g" "c" "g" "g" "t" "g" "g" ## [953] "a" "g" "c" "a" "t" "g" "t" "g" "g" "t" "t" "t" "a" "a" "t" "t" "c" ## [970] "g" "a" "a" "g" "c" "a" "a" "c" "g" "c" "g" "a" "a" "g" "a" "a" "c" ## [987] "c" "t" "t" "a" "c" "c" "a" "g" "g" "t" "c" "t" "t" "g" "a" "c" "a" ## [1004] "t" "c" "c" "t" "c" "t" "g" "a" "c" "a" "a" "c" "c" "c" "t" "a" "g" ## [1021] "a" "g" "a" "t" "a" "g" "g" "g" "c" "t" "t" "c" "t" "c" "c" "t" "t" ## [1038] "c" "g" "g" "g" "a" "g" "c" "a" "g" "a" "g" "t" "g" "a" "c" "a" "g" ## [1055] "g" "t" "g" "g" "t" "g" "c" "a" "t" "g" "g" "t" "t" "g" "t" "c" "g" ## [1072] "t" "c" "a" "g" "c" "t" "c" "g" "t" "g" "t" "c" "g" "t" "g" "a" "g" ## [1089] "a" "t" "g" "t" "t" "g" "g" "g" "t" "t" "a" "a" "g" "t" "c" "c" "c" ## [1106] "g" "c" "a" "a" "c" "g" "a" "g" "c" "g" "c" "a" "a" "c" "c" "c" "t" ## [1123] "t" "g" "a" "t" "c" "t" "t" "a" "g" "t" "t" "g" "c" "c" "a" "t" "c" ## [1140] "a" "t" "t" "w" "a" "g" "t" "t" "g" "g" "g" "c" "a" "c" "t" "c" "t" ## [1157] "a" "a" "g" "g" "t" "g" "a" "c" "t" "g" "c" "c" "g" "g" "t" "g" "a" ## [1174] "c" "a" "a" "a" "c" "c" "g" "g" "a" "g" "g" "a" "a" "g" "g" "t" "g" ## [1191] "g" "g" "g" "a" "t" "g" "a" "c" "g" "t" "c" "a" "a" "a" "t" "c" "a" ## [1208] "t" "c" "a" "t" "g" "c" "c" "c" "c" "t" "t" "a" "t" "g" "a" "c" "c" ## [1225] "t" "g" "g" "g" "c" "t" "a" "c" "a" "c" "a" "c" "g" "t" "g" "c" "t" ## [1242] "a" "c" "a" "a" "t" "g" "g" "a" "c" "g" "g" "t" "a" "c" "a" "a" "a" ## [1259] "g" "a" "g" "c" "t" "g" "c" "a" "a" "g" "a" "c" "c" "g" "c" "g" "a" ## [1276] "g" "g" "t" "g" "g" "a" "g" "c" "t" "a" "a" "t" "c" "t" "c" "a" "t" ## [1293] "a" "a" "a" "a" "c" "c" "g" "t" "t" "c" "t" "c" "a" "g" "t" "t" "c" ## [1310] "g" "g" "a" "t" "t" "g" "t" "a" "g" "g" "c" "t" "g" "c" "a" "a" "c" ## [1327] "t" "c" "g" "c" "c" "t" "a" "c" "a" "t" "g" "a" "a" "g" "c" "t" "g" ## [1344] "g" "a" "a" "t" "c" "g" "c" "t" "a" "g" "t" "a" "a" "t" "c" "g" "c" ## [1361] "g" "g" "a" "t" "c" "a" "g" "c" "a" "t" "g" "c" "c" "g" "c" "g" "g" ## [1378] "t" "g" "a" "a" "t" "a" "c" "g" "t" "t" "c" "c" "c" "g" "g" "g" "c" ## [1395] "c" "t" "t" "g" "t" "a" "c" "a" "c" "a" "c" "c" "g" "c" "c" "c" "g" ## [1412] "t" "c" "a" "c" "a" "c" "c" "a" "c" "g" "a" "g" "a" "g" "t" "t" "t" ## [1429] "g" "t" "a" "a" "c" "a" "c" "c" "c" "g" "a" "a" "g" "t" "c" "g" "g" ## [1446] "t" "g" "g" "g" "g" "t" "a" "a" "c" "c" "t" "t" "t" "t" "t" "g" "g" ## [1463] "a" "g" "c" "c" "a" "g" "c" "c" "g" "c" "c" "t" "a" "a" "g" "g" "t" ## [1480] "g" "g" "g" "a" "c" "a" "g" "a" "t" "g" "a" "t" "t" "g" "g" "g" "g" ## [1497] "t" "g" "a" "a" "g" "t" "c" "g" "t" "a" "a" "c" "a" "a" "g" "g" "t" ## [1514] "a" "g" "c" "c" "g" "t" "a" "t" "c" "g" "g" "a" "a" "g" "g" "t" "g" ## [1531] "c" "g" "g" "c" "t" "g" "g" "a" "t" "c" "a" "c" "c" "t" "c" "c" "t" ## [1548] "t" "t" "c" "t" ## attr(,"name") ## [1] "24.6jsd1.Tut" ## attr(,"Annot") ## [1] ">24.6jsd1.Tut" ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd2.Tut` ## [1] "g" "g" "t" "g" "t" "t" "g" "a" "t" "c" "a" "t" "g" "g" "c" "t" "c" ## [18] "a" "g" "g" "a" "c" "a" "a" "a" "c" "g" "c" "t" "g" "g" "c" "g" "g" ## [35] "c" "g" "t" "g" "c" "t" "t" "a" "a" "t" "a" "c" "a" "t" "g" "c" "a" ## [52] "a" "g" "t" "c" "g" "a" "a" "c" "g" "g" "g" "c" "t" "a" "c" "c" "t" ## [69] "t" "c" "g" "g" "g" "t" "a" "g" "c" "t" "a" "g" "t" "g" "g" "c" "g" ## [86] "g" "a" "c" "g" "g" "g" "t" "g" "a" "g" "t" "a" "a" "c" "a" "c" "g" ## [103] "t" "a" "g" "g" "t" "t" "t" "t" "c" "t" "g" "c" "c" "c" "a" "a" "t" ## [120] "a" "g" "t" "g" "g" "g" "g" "a" "a" "t" "a" "a" "c" "a" "g" "c" "t" ## [137] "c" "g" "a" "a" "a" "g" "a" "g" "t" "t" "g" "c" "t" "a" "a" "t" "a" ## [154] "c" "c" "g" "c" "a" "t" "a" "a" "g" "c" "t" "c" "t" "c" "t" "t" "g" ## [171] "c" "g" "t" "g" "g" "g" "c" "a" "g" "g" "a" "g" "a" "g" "g" "a" "a" ## [188] "a" "c" "c" "c" "c" "a" "g" "g" "a" "g" "c" "a" "a" "t" "t" "c" "t" ## [205] "g" "g" "g" "g" "g" "c" "t" "a" "t" "a" "g" "g" "a" "g" "g" "a" "g" ## [222] "c" "c" "t" "g" "c" "g" "g" "c" "g" "g" "a" "t" "t" "a" "g" "c" "t" ## [239] "a" "g" "a" "t" "g" "g" "t" "g" "g" "g" "g" "t" "a" "a" "a" "g" "g" ## [256] "c" "c" "t" "a" "c" "c" "a" "t" "g" "g" "c" "g" "a" "c" "g" "a" "t" ## [273] "c" "c" "g" "t" "a" "g" "c" "t" "g" "g" "t" "c" "t" "g" "a" "g" "a" ## [290] "g" "g" "a" "c" "g" "g" "c" "c" "a" "g" "c" "c" "a" "c" "a" "c" "t" ## [307] "g" "g" "g" "a" "c" "t" "g" "a" "g" "a" "c" "a" "c" "g" "g" "c" "c" ## [324] "c" "a" "g" "a" "c" "t" "c" "c" "t" "a" "c" "g" "g" "g" "a" "g" "g" ## [341] "c" "a" "g" "c" "a" "g" "t" "a" "a" "g" "g" "a" "a" "t" "a" "t" "t" ## [358] "c" "c" "a" "c" "a" "a" "t" "g" "g" "c" "c" "g" "a" "a" "a" "g" "c" ## [375] "g" "t" "g" "a" "t" "g" "g" "a" "g" "c" "g" "a" "a" "a" "c" "c" "g" ## [392] "c" "g" "t" "g" "c" "g" "g" "g" "a" "g" "g" "a" "a" "g" "c" "c" "t" ## [409] "t" "t" "c" "g" "g" "g" "g" "t" "g" "t" "a" "a" "a" "c" "c" "g" "c" ## [426] "t" "t" "t" "t" "a" "g" "g" "g" "g" "a" "g" "a" "t" "g" "a" "a" "a" ## [443] "c" "g" "c" "c" "a" "c" "c" "g" "t" "a" "a" "g" "g" "t" "g" "g" "c" ## [460] "t" "a" "a" "g" "a" "c" "a" "g" "t" "a" "c" "c" "c" "c" "c" "t" "g" ## [477] "a" "a" "t" "a" "a" "g" "c" "a" "t" "c" "g" "g" "c" "t" "a" "a" "c" ## [494] "t" "a" "c" "g" "t" "g" "c" "c" "a" "g" "c" "a" "g" "c" "c" "g" "c" ## [511] "g" "g" "t" "a" "a" "t" "a" "c" "g" "t" "a" "g" "g" "a" "t" "g" "c" ## [528] "a" "a" "g" "c" "g" "t" "t" "g" "t" "c" "c" "g" "g" "a" "t" "t" "t" ## [545] "a" "c" "t" "g" "g" "g" "c" "g" "t" "a" "a" "a" "g" "c" "g" "c" "g" ## [562] "c" "g" "c" "a" "g" "g" "c" "g" "g" "c" "a" "g" "g" "t" "t" "a" "a" ## [579] "g" "t" "a" "a" "g" "g" "t" "g" "t" "g" "a" "a" "a" "t" "c" "t" "c" ## [596] "c" "c" "t" "g" "c" "t" "c" "a" "a" "c" "g" "g" "g" "g" "a" "g" "g" ## [613] "g" "t" "g" "c" "a" "c" "t" "c" "c" "a" "g" "a" "c" "t" "g" "a" "c" ## [630] "c" "a" "g" "c" "t" "a" "g" "a" "g" "g" "a" "c" "g" "g" "t" "a" "g" ## [647] "a" "g" "g" "g" "t" "g" "g" "t" "g" "g" "a" "a" "t" "t" "g" "c" "t" ## [664] "g" "g" "t" "g" "t" "a" "g" "c" "g" "g" "t" "g" "a" "a" "a" "t" "g" ## [681] "c" "g" "t" "a" "g" "a" "g" "a" "t" "c" "a" "g" "c" "a" "g" "g" "a" ## [698] "a" "c" "a" "c" "c" "c" "g" "t" "g" "g" "c" "g" "a" "a" "g" "g" "c" ## [715] "g" "g" "c" "c" "a" "c" "c" "t" "g" "g" "g" "c" "c" "g" "t" "a" "c" ## [732] "c" "t" "g" "a" "c" "g" "c" "t" "g" "a" "g" "g" "c" "g" "c" "g" "a" ## [749] "a" "g" "g" "c" "t" "a" "g" "g" "g" "g" "a" "g" "c" "g" "a" "a" "c" ## [766] "g" "g" "g" "a" "t" "t" "a" "g" "a" "t" "a" "c" "c" "c" "c" "g" "g" ## [783] "t" "a" "g" "t" "c" "c" "t" "a" "g" "c" "a" "g" "t" "a" "a" "a" "c" ## [800] "g" "a" "t" "g" "t" "c" "c" "a" "c" "t" "a" "g" "g" "t" "g" "t" "g" ## [817] "g" "g" "g" "g" "g" "t" "t" "g" "t" "t" "g" "a" "c" "c" "c" "c" "t" ## [834] "t" "c" "c" "g" "t" "g" "c" "c" "g" "a" "a" "g" "c" "c" "a" "a" "c" ## [851] "g" "c" "a" "t" "t" "a" "a" "g" "t" "g" "g" "a" "c" "c" "g" "c" "c" ## [868] "t" "g" "g" "g" "g" "a" "g" "t" "a" "c" "g" "g" "t" "c" "g" "c" "a" ## [885] "a" "g" "a" "c" "t" "a" "a" "a" "a" "c" "t" "c" "a" "a" "a" "g" "g" ## [902] "a" "a" "t" "t" "g" "a" "c" "g" "g" "g" "g" "a" "c" "c" "c" "g" "c" ## [919] "a" "c" "a" "a" "g" "c" "a" "g" "c" "g" "g" "a" "g" "c" "g" "t" "g" ## [936] "t" "g" "g" "t" "t" "t" "a" "a" "t" "t" "c" "g" "a" "t" "g" "c" "g" ## [953] "a" "c" "g" "c" "g" "a" "a" "g" "a" "a" "c" "c" "t" "t" "a" "c" "c" ## [970] "t" "g" "g" "g" "c" "t" "t" "g" "a" "c" "a" "t" "g" "c" "t" "a" "t" ## [987] "c" "g" "c" "a" "a" "c" "a" "c" "c" "c" "t" "g" "a" "a" "a" "g" "g" ## [1004] "g" "g" "t" "g" "c" "c" "t" "c" "c" "t" "t" "c" "g" "g" "g" "a" "c" ## [1021] "g" "g" "t" "a" "g" "c" "a" "c" "a" "g" "a" "t" "g" "c" "t" "g" "c" ## [1038] "a" "t" "g" "g" "c" "t" "g" "t" "c" "g" "t" "c" "a" "g" "c" "t" "c" ## [1055] "g" "t" "g" "t" "c" "g" "t" "g" "a" "g" "a" "t" "g" "t" "t" "g" "g" ## [1072] "g" "t" "t" "a" "a" "g" "t" "c" "c" "c" "g" "c" "a" "a" "c" "g" "a" ## [1089] "g" "c" "g" "c" "a" "a" "c" "c" "c" "c" "t" "g" "t" "c" "c" "t" "t" ## [1106] "a" "g" "t" "t" "g" "t" "a" "t" "a" "t" "c" "t" "a" "a" "g" "g" "a" ## [1123] "g" "a" "c" "t" "g" "c" "c" "g" "g" "a" "g" "a" "c" "a" "a" "a" "c" ## [1140] "c" "g" "g" "a" "g" "g" "a" "a" "g" "g" "t" "g" "g" "g" "g" "a" "t" ## [1157] "g" "a" "c" "g" "t" "c" "a" "a" "g" "t" "c" "a" "g" "c" "a" "t" "g" ## [1174] "g" "c" "t" "c" "t" "t" "a" "c" "g" "t" "c" "c" "a" "g" "g" "g" "c" ## [1191] "t" "a" "c" "a" "c" "a" "t" "a" "c" "g" "c" "t" "a" "c" "a" "a" "t" ## [1208] "g" "g" "c" "c" "g" "t" "t" "a" "c" "a" "g" "t" "g" "a" "g" "a" "t" ## [1225] "g" "c" "c" "a" "c" "a" "c" "c" "g" "c" "g" "a" "g" "g" "t" "g" "g" ## [1242] "a" "g" "c" "a" "g" "a" "t" "c" "t" "c" "c" "a" "a" "a" "g" "g" "c" ## [1259] "g" "g" "c" "c" "t" "c" "a" "g" "t" "t" "c" "a" "g" "a" "t" "t" "g" ## [1276] "c" "a" "c" "t" "c" "t" "g" "c" "a" "a" "c" "c" "c" "g" "a" "g" "t" ## [1293] "g" "c" "a" "t" "g" "a" "a" "g" "t" "c" "g" "g" "a" "g" "t" "t" "g" ## [1310] "c" "t" "a" "g" "t" "a" "a" "c" "c" "g" "c" "g" "t" "g" "t" "c" "a" ## [1327] "g" "c" "a" "t" "a" "g" "c" "g" "c" "g" "g" "t" "g" "a" "a" "t" "a" ## [1344] "t" "g" "t" "t" "c" "c" "c" "g" "g" "g" "t" "c" "t" "t" "g" "t" "a" ## [1361] "c" "a" "c" "a" "c" "c" "g" "c" "c" "c" "g" "t" "c" "a" "c" "g" "t" ## [1378] "c" "a" "t" "g" "g" "g" "a" "g" "c" "c" "g" "g" "c" "a" "a" "c" "a" ## [1395] "c" "t" "t" "c" "g" "a" "g" "t" "c" "c" "g" "t" "g" "a" "g" "c" "t" ## [1412] "a" "a" "c" "c" "c" "c" "c" "c" "c" "t" "t" "t" "c" "g" "a" "g" "g" ## [1429] "g" "t" "g" "t" "g" "g" "g" "a" "g" "g" "c" "a" "g" "c" "g" "g" "c" ## [1446] "c" "g" "a" "g" "g" "g" "t" "g" "g" "g" "g" "c" "t" "g" "g" "t" "g" ## [1463] "a" "c" "t" "g" "g" "g" "a" "c" "g" "a" "a" "g" "t" "c" "g" "t" "a" ## [1480] "a" "c" "a" "a" "g" "g" "t" ## attr(,"name") ## [1] "24.6jsd2.Tut" ## attr(,"Annot") ## [1] ">24.6jsd2.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd3.Tut` ## [1] "a" "g" "t" "t" "t" "g" "a" "t" "c" "a" "t" "g" "g" "c" "t" "c" "a" ## [18] "g" "a" "t" "t" "g" "a" "a" "c" "g" "c" "t" "g" "g" "c" "g" "g" "c" ## [35] "a" "t" "g" "c" "c" "t" "t" "a" "c" "a" "c" "a" "t" "g" "c" "a" "a" ## [52] "g" "t" "c" "g" "a" "a" "c" "g" "g" "c" "a" "g" "c" "a" "c" "g" "g" ## [69] "g" "g" "a" "a" "g" "g" "g" "g" "c" "a" "a" "c" "t" "c" "t" "t" "t" ## [86] "t" "c" "t" "g" "g" "t" "g" "g" "c" "g" "a" "g" "t" "g" "g" "c" "a" ## [103] "a" "a" "c" "g" "g" "g" "t" "g" "a" "g" "t" "a" "a" "c" "g" "c" "a" ## [120] "t" "c" "g" "g" "a" "a" "c" "g" "t" "a" "c" "c" "c" "a" "g" "t" "a" ## [137] "g" "t" "g" "g" "g" "g" "g" "a" "t" "a" "a" "c" "g" "t" "a" "c" "c" ## [154] "g" "a" "a" "a" "g" "g" "t" "a" "c" "g" "c" "t" "a" "a" "t" "a" "c" ## [171] "c" "g" "c" "a" "t" "a" "c" "g" "a" "c" "c" "t" "g" "a" "g" "g" "g" ## [188] "t" "g" "a" "a" "a" "g" "c" "g" "g" "g" "g" "g" "a" "c" "c" "t" "g" ## [205] "t" "c" "a" "g" "a" "g" "g" "g" "c" "c" "t" "c" "g" "c" "g" "c" "t" ## [222] "a" "t" "t" "g" "g" "a" "g" "c" "g" "g" "c" "c" "g" "a" "t" "g" "t" ## [239] "c" "c" "g" "a" "t" "t" "a" "g" "c" "t" "a" "g" "t" "t" "g" "g" "t" ## [256] "g" "g" "g" "g" "t" "a" "a" "a" "g" "g" "c" "t" "c" "a" "c" "c" "a" ## [273] "a" "g" "g" "c" "t" "g" "t" "g" "a" "t" "c" "g" "g" "t" "a" "g" "c" ## [290] "t" "g" "g" "t" "c" "t" "g" "a" "g" "a" "g" "g" "a" "c" "g" "a" "t" ## [307] "c" "a" "g" "c" "c" "a" "c" "a" "c" "t" "g" "g" "g" "a" "c" "t" "g" ## [324] "a" "g" "a" "c" "a" "c" "g" "g" "c" "c" "c" "a" "g" "a" "c" "t" "c" ## [341] "c" "t" "a" "c" "g" "g" "g" "a" "g" "g" "c" "a" "g" "c" "a" "g" "t" ## [358] "g" "g" "g" "g" "a" "a" "t" "t" "t" "t" "g" "g" "a" "c" "a" "a" "t" ## [375] "g" "g" "g" "c" "g" "c" "a" "a" "g" "c" "c" "t" "g" "a" "t" "c" "c" ## [392] "a" "g" "c" "a" "a" "t" "g" "c" "c" "g" "c" "g" "t" "g" "t" "g" "c" ## [409] "g" "a" "a" "g" "a" "a" "g" "g" "c" "c" "t" "t" "c" "g" "g" "g" "t" ## [426] "t" "g" "t" "a" "a" "a" "g" "c" "a" "c" "t" "t" "t" "t" "g" "t" "c" ## [443] "c" "g" "g" "a" "a" "c" "g" "a" "a" "a" "a" "g" "c" "g" "c" "c" "t" ## [460] "g" "g" "c" "t" "a" "a" "t" "a" "c" "c" "t" "g" "g" "g" "t" "g" "c" ## [477] "g" "a" "t" "g" "a" "c" "g" "g" "t" "a" "c" "c" "g" "g" "a" "a" "g" ## [494] "a" "a" "t" "a" "a" "g" "c" "a" "c" "c" "g" "g" "c" "t" "a" "a" "c" ## [511] "t" "a" "c" "g" "t" "g" "c" "c" "a" "g" "c" "a" "g" "c" "c" "g" "c" ## [528] "g" "g" "t" "a" "a" "t" "a" "c" "g" "t" "a" "g" "g" "g" "g" "g" "c" ## [545] "a" "a" "g" "c" "g" "t" "t" "g" "t" "c" "c" "g" "g" "a" "a" "t" "t" ## [562] "a" "t" "t" "g" "g" "g" "c" "g" "t" "a" "a" "a" "g" "c" "g" "c" "g" ## [579] "c" "g" "c" "a" "g" "g" "c" "g" "g" "t" "t" "t" "t" "g" "t" "a" "a" ## [596] "g" "t" "t" "t" "g" "g" "t" "g" "t" "c" "t" "a" "a" "g" "a" "c" "t" ## [613] "g" "g" "g" "g" "c" "t" "c" "a" "a" "c" "c" "c" "t" "g" "g" "a" "a" ## [630] "c" "g" "c" "a" "c" "c" "g" "a" "a" "a" "a" "c" "t" "g" "c" "a" "a" ## [647] "g" "a" "c" "t" "t" "g" "a" "g" "t" "g" "c" "a" "g" "g" "a" "g" "a" ## [664] "g" "g" "a" "a" "a" "g" "t" "g" "g" "a" "a" "t" "t" "c" "c" "a" "c" ## [681] "g" "t" "g" "t" "a" "g" "c" "g" "g" "t" "g" "a" "a" "a" "t" "g" "c" ## [698] "g" "t" "a" "g" "a" "g" "a" "t" "g" "t" "g" "g" "a" "g" "g" "a" "a" ## [715] "c" "a" "c" "c" "a" "g" "t" "g" "g" "c" "c" "c" "a" "g" "g" "c" "g" ## [732] "a" "c" "t" "t" "t" "c" "t" "g" "g" "a" "c" "t" "g" "t" "a" "a" "c" ## [749] "t" "g" "a" "c" "g" "c" "t" "g" "a" "g" "g" "c" "g" "c" "g" "a" "a" ## [766] "a" "g" "c" "g" "t" "g" "g" "g" "g" "a" "g" "c" "a" "a" "a" "c" "a" ## [783] "g" "g" "a" "t" "t" "a" "g" "a" "t" "a" "c" "c" "c" "t" "g" "g" "t" ## [800] "a" "g" "t" "c" "c" "a" "c" "g" "c" "c" "g" "t" "a" "a" "a" "c" "g" ## [817] "a" "t" "g" "a" "a" "t" "g" "c" "t" "a" "g" "g" "t" "g" "t" "t" "a" ## [834] "t" "t" "g" "g" "t" "t" "t" "c" "c" "a" "t" "g" "c" "c" "t" "t" "a" ## [851] "g" "g" "t" "g" "c" "c" "g" "a" "a" "g" "t" "t" "a" "a" "c" "a" "c" ## [868] "a" "g" "t" "a" "a" "g" "c" "a" "t" "t" "c" "c" "g" "c" "c" "t" "g" ## [885] "g" "g" "g" "a" "g" "t" "a" "c" "g" "g" "c" "c" "g" "c" "a" "a" "g" ## [902] "g" "c" "t" "g" "a" "a" "a" "c" "t" "c" "a" "a" "a" "g" "g" "a" "a" ## [919] "t" "t" "g" "a" "c" "g" "g" "g" "g" "a" "c" "c" "c" "g" "c" "a" "c" ## [936] "a" "a" "g" "c" "a" "g" "t" "g" "g" "a" "g" "t" "a" "t" "g" "t" "g" ## [953] "g" "t" "t" "t" "a" "a" "t" "t" "c" "g" "a" "a" "g" "c" "a" "a" "c" ## [970] "g" "c" "g" "a" "a" "g" "a" "a" "c" "c" "t" "t" "a" "c" "c" "a" "g" ## [987] "g" "t" "c" "t" "t" "g" "a" "c" "a" "t" "c" "c" "c" "g" "a" "t" "g" ## [1004] "a" "a" "a" "g" "c" "a" "t" "t" "a" "g" "a" "g" "a" "t" "a" "g" "t" ## [1021] "g" "c" "c" "c" "c" "t" "c" "t" "t" "c" "g" "g" "a" "g" "c" "a" "t" ## [1038] "t" "g" "g" "a" "g" "a" "c" "a" "g" "g" "t" "g" "g" "t" "g" "c" "a" ## [1055] "t" "g" "g" "t" "t" "g" "t" "c" "g" "t" "c" "a" "g" "c" "t" "c" "g" ## [1072] "t" "g" "t" "c" "g" "t" "g" "a" "g" "a" "t" "g" "t" "t" "g" "g" "g" ## [1089] "t" "t" "a" "a" "g" "t" "c" "c" "c" "g" "c" "a" "a" "c" "g" "a" "g" ## [1106] "c" "g" "c" "a" "a" "c" "c" "c" "t" "t" "g" "a" "t" "c" "t" "t" "a" ## [1123] "g" "t" "t" "g" "c" "c" "a" "g" "c" "a" "c" "g" "t" "g" "a" "g" "g" ## [1140] "t" "g" "g" "g" "c" "a" "c" "t" "c" "t" "a" "a" "g" "a" "t" "g" "a" ## [1157] "c" "t" "g" "c" "c" "g" "g" "t" "g" "a" "c" "a" "a" "a" "c" "c" "g" ## [1174] "g" "a" "g" "g" "a" "a" "g" "g" "t" "g" "g" "t" "t" "a" "t" "g" "a" ## [1191] "c" "g" "t" "c" "a" "a" "a" "t" "c" "a" "t" "c" "a" "t" "g" "c" "c" ## [1208] "c" "c" "t" "t" "a" "t" "g" "a" "c" "c" "t" "g" "g" "g" "c" "t" "a" ## [1225] "c" "a" "c" "a" "c" "g" "t" "a" "c" "t" "a" "c" "a" "a" "t" "g" "g" ## [1242] "c" "c" "g" "g" "t" "a" "c" "a" "a" "c" "g" "g" "g" "a" "a" "g" "c" ## [1259] "g" "a" "a" "g" "g" "a" "g" "c" "g" "a" "t" "c" "c" "g" "g" "a" "g" ## [1276] "c" "c" "a" "c" "c" "c" "c" "c" "a" "g" "c" "a" "a" "a" "g" "c" "c" ## [1293] "g" "g" "t" "c" "t" "c" "a" "g" "t" "t" "c" "g" "g" "a" "t" "t" "g" ## [1310] "c" "a" "g" "g" "c" "t" "g" "c" "a" "a" "c" "t" "c" "g" "c" "c" "t" ## [1327] "g" "c" "a" "t" "g" "a" "a" "g" "t" "c" "g" "g" "a" "a" "t" "t" "g" ## [1344] "c" "t" "a" "g" "t" "a" "a" "t" "c" "g" "c" "g" "g" "a" "t" "c" "a" ## [1361] "g" "c" "a" "t" "g" "c" "c" "g" "c" "g" "g" "t" "g" "a" "a" "t" "a" ## [1378] "c" "g" "t" "t" "c" "c" "c" "g" "g" "g" "t" "c" "t" "t" "g" "t" "a" ## [1395] "c" "a" "c" "a" "c" "c" "g" "c" "c" "c" "g" "t" "c" "a" "c" "a" "c" ## [1412] "c" "a" "c" "g" "a" "g" "a" "g" "c" "t" "t" "a" "c" "a" "a" "c" "a" ## [1429] "c" "c" "c" "g" "a" "a" "g" "t" "c" "g" "g" "t" "g" "g" "g" "g" "t" ## [1446] "a" "a" "c" "c" "c" "g" "c" "a" "a" "g" "g" "g" "a" "g" "c" "c" "a" ## [1463] "g" "c" "c" "g" "c" "c" "g" "a" "a" "g" "g" "t" "g" "g" "g" "g" "t" ## [1480] "a" "g" "a" "t" "g" "a" "t" "t" "g" "g" "g" "g" "t" "g" "a" "a" "g" ## [1497] "t" "c" "g" "t" "a" "a" "c" "a" "a" "g" "g" "t" "a" "a" "c" "c" ## attr(,"name") ## [1] "24.6jsd3.Tut" ## attr(,"Annot") ## [1] ">24.6jsd3.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd4.Tut` ## [1] "g" "a" "g" "t" "t" "t" "g" "a" "t" "c" "a" "t" "g" "g" "c" "t" "c" ## [18] "a" "g" "g" "a" "c" "g" "a" "c" "t" "c" "c" "t" "g" "g" "c" "g" "g" ## [35] "c" "g" "t" "g" "c" "c" "t" "a" "a" "t" "a" "c" "a" "t" "g" "c" "a" ## [52] "a" "g" "t" "c" "g" "a" "g" "c" "g" "a" "a" "t" "c" "t" "g" "a" "g" ## [69] "g" "g" "a" "g" "c" "t" "t" "g" "c" "t" "c" "c" "c" "a" "a" "a" "g" ## [86] "a" "t" "t" "a" "g" "c" "g" "g" "c" "g" "g" "a" "c" "g" "g" "g" "t" ## [103] "g" "a" "g" "t" "a" "a" "c" "a" "c" "g" "t" "g" "g" "g" "c" "a" "a" ## [120] "c" "c" "t" "g" "c" "c" "t" "g" "t" "a" "a" "g" "a" "c" "t" "g" "g" ## [137] "g" "a" "t" "a" "a" "c" "t" "t" "c" "g" "g" "g" "a" "a" "a" "c" "c" ## [154] "g" "g" "a" "g" "c" "t" "a" "a" "t" "a" "c" "c" "g" "g" "a" "t" "a" ## [171] "a" "t" "t" "c" "t" "t" "a" "t" "c" "a" "a" "c" "a" "c" "a" "t" "g" ## [188] "t" "t" "g" "a" "t" "a" "a" "g" "c" "t" "a" "a" "a" "a" "g" "a" "c" ## [205] "g" "g" "c" "g" "t" "a" "a" "g" "c" "t" "g" "t" "c" "a" "c" "t" "t" ## [222] "a" "c" "a" "g" "a" "t" "g" "g" "g" "c" "c" "c" "g" "c" "g" "g" "c" ## [239] "g" "c" "a" "t" "t" "a" "g" "c" "t" "a" "g" "t" "t" "g" "g" "t" "a" ## [256] "a" "g" "g" "t" "a" "a" "t" "g" "g" "c" "t" "t" "a" "c" "c" "a" "a" ## [273] "g" "g" "c" "a" "a" "c" "g" "a" "t" "g" "c" "g" "t" "a" "g" "c" "c" ## [290] "g" "a" "c" "c" "t" "g" "a" "g" "a" "g" "g" "g" "t" "g" "a" "t" "c" ## [307] "g" "g" "c" "c" "a" "c" "a" "c" "t" "g" "g" "g" "a" "c" "t" "g" "a" ## [324] "g" "a" "c" "a" "c" "g" "g" "c" "c" "c" "a" "g" "a" "c" "t" "c" "c" ## [341] "t" "a" "c" "g" "g" "g" "a" "g" "g" "c" "a" "g" "c" "a" "g" "t" "a" ## [358] "g" "g" "g" "a" "a" "t" "c" "t" "t" "c" "c" "g" "c" "a" "a" "t" "g" ## [375] "g" "a" "c" "g" "a" "a" "a" "g" "t" "c" "t" "g" "a" "c" "g" "g" "a" ## [392] "g" "c" "a" "a" "c" "g" "c" "c" "g" "c" "g" "t" "g" "a" "g" "t" "g" ## [409] "a" "t" "g" "a" "a" "g" "g" "t" "t" "t" "t" "c" "g" "g" "a" "t" "c" ## [426] "g" "t" "a" "a" "a" "a" "c" "t" "c" "t" "g" "t" "t" "g" "t" "t" "a" ## [443] "g" "g" "g" "a" "a" "g" "a" "a" "c" "a" "a" "g" "t" "a" "c" "g" "a" ## [460] "g" "a" "g" "t" "a" "a" "c" "t" "g" "c" "t" "c" "g" "t" "a" "c" "c" ## [477] "t" "t" "g" "a" "c" "g" "g" "t" "a" "c" "c" "t" "a" "a" "c" "c" "a" ## [494] "g" "a" "a" "a" "g" "c" "c" "a" "c" "g" "g" "c" "t" "a" "a" "c" "t" ## [511] "a" "c" "g" "t" "g" "c" "c" "a" "g" "c" "a" "g" "c" "c" "g" "c" "g" ## [528] "g" "t" "a" "a" "t" "a" "c" "g" "t" "a" "g" "g" "t" "g" "g" "c" "a" ## [545] "a" "g" "c" "g" "t" "t" "g" "t" "c" "c" "g" "g" "a" "a" "t" "t" "a" ## [562] "t" "t" "g" "g" "g" "c" "g" "t" "a" "a" "a" "g" "c" "g" "c" "g" "c" ## [579] "g" "c" "a" "g" "g" "c" "g" "g" "t" "c" "c" "t" "t" "t" "a" "a" "g" ## [596] "t" "c" "t" "g" "a" "t" "g" "t" "g" "a" "a" "a" "g" "c" "c" "c" "a" ## [613] "c" "g" "g" "c" "t" "c" "a" "a" "c" "c" "g" "t" "g" "g" "a" "g" "g" ## [630] "g" "t" "c" "a" "t" "t" "g" "g" "a" "a" "a" "c" "t" "g" "g" "g" "g" ## [647] "g" "a" "c" "t" "t" "g" "a" "g" "t" "g" "c" "a" "g" "g" "a" "g" "a" ## [664] "g" "a" "a" "g" "a" "g" "t" "g" "g" "a" "a" "t" "t" "c" "c" "a" "c" ## [681] "g" "t" "g" "t" "a" "g" "c" "g" "g" "t" "g" "a" "a" "c" "c" "a" "c" ## [698] "g" "t" "a" "g" "a" "g" "a" "t" "g" "t" "g" "g" "a" "g" "g" "a" "a" ## [715] "c" "a" "c" "c" "a" "g" "t" "g" "g" "c" "g" "a" "a" "g" "g" "c" "g" ## [732] "a" "c" "t" "c" "t" "t" "t" "g" "g" "c" "c" "t" "g" "t" "a" "a" "c" ## [749] "t" "g" "a" "c" "g" "c" "t" "g" "a" "g" "g" "c" "g" "c" "g" "a" "a" ## [766] "a" "g" "c" "g" "t" "g" "g" "g" "g" "a" "g" "c" "a" "a" "a" "c" "a" ## [783] "g" "g" "a" "t" "t" "a" "g" "a" "t" "a" "c" "c" "c" "t" "g" "g" "t" ## [800] "a" "g" "t" "c" "c" "a" "c" "g" "c" "c" "g" "t" "a" "a" "a" "c" "g" ## [817] "a" "t" "g" "a" "g" "t" "g" "c" "t" "a" "a" "g" "t" "g" "t" "t" "a" ## [834] "g" "a" "g" "g" "g" "t" "t" "t" "c" "c" "g" "c" "c" "c" "t" "t" "t" ## [851] "a" "g" "t" "g" "c" "t" "g" "a" "a" "g" "t" "a" "a" "a" "c" "g" "c" ## [868] "a" "t" "t" "a" "a" "g" "c" "a" "c" "t" "c" "c" "g" "c" "c" "t" "g" ## [885] "g" "g" "g" "a" "g" "t" "a" "c" "g" "g" "c" "c" "g" "c" "a" "a" "g" ## [902] "g" "c" "t" "g" "a" "a" "a" "c" "t" "c" "a" "a" "a" "g" "g" "a" "a" ## [919] "t" "t" "g" "a" "c" "g" "g" "g" "g" "a" "c" "c" "c" "g" "c" "a" "c" ## [936] "a" "a" "g" "c" "g" "g" "t" "g" "g" "a" "g" "c" "a" "t" "g" "t" "g" ## [953] "g" "t" "t" "t" "a" "a" "t" "t" "c" "g" "a" "a" "g" "c" "a" "a" "c" ## [970] "g" "c" "g" "a" "a" "g" "a" "a" "c" "c" "t" "t" "a" "c" "c" "a" "g" ## [987] "g" "t" "c" "t" "t" "g" "a" "c" "a" "t" "c" "c" "t" "c" "t" "g" "a" ## [1004] "c" "c" "a" "c" "c" "c" "t" "a" "g" "a" "g" "a" "t" "a" "g" "g" "g" ## [1021] "c" "c" "t" "t" "c" "c" "c" "c" "t" "t" "c" "g" "g" "g" "g" "g" "a" ## [1038] "c" "a" "g" "a" "g" "t" "g" "a" "c" "a" "g" "g" "t" "g" "g" "t" "g" ## [1055] "c" "a" "t" "g" "g" "t" "t" "g" "t" "c" "g" "t" "c" "a" "g" "c" "t" ## [1072] "c" "g" "t" "g" "t" "c" "g" "t" "g" "a" "g" "a" "t" "g" "t" "t" "g" ## [1089] "g" "g" "t" "t" "a" "a" "g" "t" "c" "c" "c" "g" "c" "a" "a" "c" "g" ## [1106] "a" "g" "c" "g" "c" "a" "a" "c" "c" "c" "t" "t" "g" "t" "c" "c" "t" ## [1123] "t" "a" "g" "t" "t" "g" "c" "c" "a" "g" "c" "a" "t" "t" "c" "a" "g" ## [1140] "t" "t" "g" "g" "g" "c" "a" "c" "t" "c" "t" "a" "a" "g" "g" "a" "g" ## [1157] "a" "c" "t" "g" "c" "c" "g" "g" "t" "g" "a" "c" "a" "a" "a" "c" "c" ## [1174] "g" "g" "a" "g" "g" "a" "a" "g" "g" "t" "g" "g" "g" "g" "a" "t" "g" ## [1191] "a" "c" "g" "t" "c" "a" "a" "a" "t" "c" "a" "t" "c" "a" "t" "g" "c" ## [1208] "c" "c" "c" "t" "t" "a" "t" "g" "a" "c" "c" "t" "g" "g" "g" "c" "t" ## [1225] "a" "c" "a" "c" "a" "c" "g" "t" "g" "c" "t" "a" "c" "a" "a" "t" "g" ## [1242] "g" "a" "t" "g" "g" "t" "a" "c" "a" "a" "a" "g" "g" "g" "a" "a" "a" ## [1259] "c" "g" "a" "a" "g" "c" "c" "g" "t" "g" "a" "g" "g" "t" "g" "t" "a" ## [1276] "g" "c" "t" "a" "a" "t" "c" "c" "c" "a" "t" "a" "a" "a" "a" "c" "c" ## [1293] "a" "t" "t" "c" "t" "c" "a" "g" "t" "t" "c" "g" "g" "a" "t" "t" "g" ## [1310] "t" "a" "g" "g" "c" "t" "g" "c" "a" "a" "c" "t" "c" "g" "c" "c" "t" ## [1327] "a" "c" "a" "t" "g" "a" "a" "g" "c" "c" "g" "g" "a" "a" "t" "c" "g" ## [1344] "c" "t" "a" "g" "t" "a" "a" "t" "c" "g" "t" "g" "g" "a" "t" "c" "a" ## [1361] "g" "c" "a" "t" "g" "c" "c" "a" "c" "g" "g" "t" "g" "a" "a" "t" "a" ## [1378] "c" "g" "t" "t" "c" "c" "c" "g" "g" "g" "t" "c" "t" "t" "g" "t" "a" ## [1395] "c" "a" "c" "a" "c" "c" "g" "c" "c" "c" "g" "t" "c" "a" "c" "a" "c" ## [1412] "c" "a" "c" "g" "a" "g" "a" "g" "t" "t" "t" "g" "t" "a" "a" "c" "a" ## [1429] "c" "c" "c" "g" "a" "a" "g" "t" "c" "g" "g" "t" "g" "g" "g" "g" "t" ## [1446] "a" "a" "c" "c" "a" "t" "t" "t" "g" "g" "a" "g" "c" "c" "a" "g" "c" ## [1463] "c" "g" "c" "c" "t" "a" "a" "g" "g" "t" "g" "g" "g" "a" "c" "a" "g" ## [1480] "a" "t" "g" "a" "t" "t" "g" "g" "c" "g" "t" "g" "a" "a" "g" "t" "c" ## [1497] "g" "t" "a" "a" "c" "a" "a" "g" "g" "t" "a" "a" "c" "c" ## attr(,"name") ## [1] "24.6jsd4.Tut" ## attr(,"Annot") ## [1] ">24.6jsd4.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd5.Tut` ## [1] "g" "g" "a" "a" "c" "c" "a" "t" "c" "a" "t" "g" "g" "c" "t" "c" "a" ## [18] "g" "g" "a" "c" "g" "a" "a" "c" "g" "c" "a" "g" "g" "c" "g" "g" "c" ## [35] "g" "t" "g" "c" "t" "t" "a" "a" "c" "a" "c" "a" "t" "g" "c" "a" "a" ## [52] "g" "t" "c" "g" "a" "g" "c" "g" "g" "a" "a" "a" "g" "g" "c" "c" "c" ## [69] "t" "t" "c" "g" "g" "g" "g" "t" "a" "c" "t" "c" "g" "a" "g" "c" "g" ## [86] "g" "c" "g" "a" "a" "c" "g" "g" "g" "t" "g" "a" "g" "t" "a" "a" "c" ## [103] "a" "c" "g" "t" "g" "a" "g" "t" "a" "a" "c" "c" "t" "g" "c" "c" "c" ## [120] "c" "a" "g" "a" "c" "t" "t" "t" "g" "g" "g" "a" "t" "a" "a" "c" "c" ## [137] "c" "t" "c" "g" "g" "a" "a" "a" "c" "g" "g" "g" "g" "g" "c" "t" "a" ## [154] "a" "t" "a" "c" "c" "g" "g" "a" "t" "a" "t" "g" "a" "c" "t" "g" "c" ## [171] "t" "g" "a" "t" "c" "g" "c" "a" "t" "g" "g" "t" "t" "g" "g" "t" "g" ## [188] "g" "t" "g" "g" "a" "a" "a" "g" "t" "t" "t" "t" "t" "c" "g" "g" "t" ## [205] "t" "t" "g" "g" "g" "a" "t" "g" "g" "g" "c" "t" "c" "g" "c" "g" "g" ## [222] "c" "c" "t" "a" "t" "c" "a" "g" "c" "t" "t" "g" "t" "t" "g" "g" "t" ## [239] "g" "g" "g" "g" "t" "g" "a" "t" "g" "g" "c" "c" "t" "a" "c" "c" "a" ## [256] "a" "g" "g" "c" "g" "a" "c" "g" "a" "c" "g" "g" "g" "t" "a" "g" "c" ## [273] "c" "g" "g" "c" "c" "t" "g" "a" "g" "a" "g" "g" "g" "c" "g" "a" "c" ## [290] "c" "g" "g" "c" "c" "a" "c" "a" "c" "t" "g" "g" "g" "g" "c" "t" "g" ## [307] "a" "g" "a" "c" "a" "c" "g" "g" "c" "c" "c" "a" "g" "a" "c" "t" "c" ## [324] "c" "t" "a" "c" "g" "g" "g" "a" "g" "g" "c" "a" "g" "c" "a" "g" "t" ## [341] "g" "g" "g" "g" "a" "a" "t" "a" "t" "t" "g" "c" "a" "c" "a" "a" "t" ## [358] "g" "g" "g" "c" "g" "g" "a" "a" "g" "c" "c" "t" "g" "a" "t" "g" "c" ## [375] "a" "g" "c" "g" "a" "c" "g" "c" "c" "g" "c" "g" "t" "g" "a" "g" "g" ## [392] "g" "a" "t" "g" "a" "c" "g" "g" "c" "c" "t" "t" "c" "g" "g" "g" "t" ## [409] "t" "g" "c" "c" "a" "a" "c" "c" "t" "c" "t" "t" "t" "c" "a" "g" "c" ## [426] "a" "g" "g" "g" "a" "c" "g" "a" "a" "g" "c" "g" "t" "a" "a" "g" "t" ## [443] "g" "a" "c" "g" "g" "t" "a" "c" "c" "t" "g" "c" "a" "g" "a" "a" "g" ## [460] "a" "a" "g" "c" "g" "c" "c" "g" "g" "c" "c" "a" "a" "c" "t" "a" "c" ## [477] "g" "t" "g" "c" "c" "a" "g" "c" "a" "g" "c" "c" "g" "c" "g" "g" "t" ## [494] "a" "a" "g" "a" "c" "g" "t" "a" "g" "g" "g" "c" "g" "c" "g" "a" "g" ## [511] "c" "g" "t" "t" "g" "t" "c" "c" "g" "g" "a" "t" "t" "t" "a" "t" "t" ## [528] "g" "n" "g" "c" "g" "t" "a" "a" "a" "g" "a" "g" "c" "t" "c" "g" "t" ## [545] "a" "g" "g" "c" "g" "g" "c" "t" "t" "g" "t" "c" "g" "c" "g" "t" "c" ## [562] "g" "a" "c" "c" "g" "t" "g" "a" "a" "a" "a" "c" "t" "t" "g" "g" "g" ## [579] "g" "c" "t" "c" "a" "a" "c" "c" "c" "c" "a" "a" "g" "c" "c" "t" "g" ## [596] "c" "g" "g" "t" "c" "g" "a" "t" "a" "c" "g" "g" "g" "c" "a" "g" "a" ## [613] "g" "t" "a" "g" "a" "g" "t" "t" "c" "g" "g" "t" "a" "g" "g" "g" "g" ## [630] "a" "g" "a" "c" "t" "g" "g" "a" "a" "t" "t" "c" "c" "t" "g" "g" "t" ## [647] "g" "t" "a" "g" "c" "g" "g" "t" "g" "a" "a" "a" "t" "g" "c" "g" "c" ## [664] "a" "g" "a" "t" "a" "t" "c" "a" "g" "g" "a" "g" "g" "a" "c" "a" "c" ## [681] "c" "c" "c" "g" "g" "t" "g" "g" "c" "g" "a" "a" "g" "g" "c" "g" "g" ## [698] "g" "t" "c" "t" "c" "t" "g" "g" "g" "c" "c" "g" "a" "t" "a" "c" "t" ## [715] "g" "a" "c" "g" "c" "t" "g" "a" "g" "g" "a" "g" "c" "g" "a" "a" "a" ## [732] "g" "c" "g" "t" "g" "g" "g" "g" "a" "g" "c" "g" "a" "a" "c" "a" "g" ## [749] "g" "a" "t" "t" "a" "g" "a" "t" "a" "c" "c" "c" "t" "g" "g" "t" "a" ## [766] "g" "t" "c" "c" "a" "c" "g" "c" "t" "g" "t" "a" "a" "a" "c" "g" "t" ## [783] "t" "g" "g" "g" "c" "g" "c" "t" "a" "g" "g" "t" "g" "t" "g" "g" "g" ## [800] "g" "g" "g" "c" "c" "t" "c" "t" "c" "c" "g" "g" "t" "t" "c" "t" "c" ## [817] "t" "g" "t" "g" "c" "c" "g" "c" "a" "g" "c" "t" "a" "a" "c" "g" "c" ## [834] "a" "t" "t" "a" "a" "g" "c" "g" "c" "c" "c" "c" "g" "c" "c" "t" "g" ## [851] "g" "g" "g" "a" "g" "t" "a" "c" "g" "g" "c" "c" "g" "c" "a" "a" "g" ## [868] "g" "c" "t" "a" "a" "a" "a" "c" "t" "c" "a" "a" "a" "g" "g" "a" "a" ## [885] "t" "t" "g" "a" "c" "g" "g" "g" "g" "g" "c" "c" "c" "g" "c" "a" "c" ## [902] "a" "a" "g" "c" "g" "g" "c" "g" "g" "a" "g" "c" "a" "t" "g" "c" "g" ## [919] "g" "a" "t" "t" "a" "a" "t" "t" "c" "g" "a" "t" "g" "c" "a" "a" "c" ## [936] "g" "c" "g" "a" "a" "g" "a" "a" "c" "c" "t" "t" "a" "c" "c" "t" "g" ## [953] "g" "g" "t" "t" "t" "g" "a" "c" "a" "t" "g" "g" "c" "c" "g" "c" "a" ## [970] "a" "a" "a" "c" "t" "g" "t" "c" "a" "g" "a" "g" "a" "t" "g" "g" "c" ## [987] "a" "g" "g" "t" "c" "c" "t" "t" "c" "g" "g" "g" "g" "g" "c" "g" "g" ## [1004] "t" "c" "a" "c" "a" "g" "g" "t" "g" "g" "t" "g" "c" "a" "t" "g" "g" ## [1021] "c" "t" "g" "t" "c" "g" "t" "t" "t" "t" "c" "t" "c" "g" "t" "g" "t" ## [1038] "c" "g" "t" "g" "a" "g" "a" "t" "g" "t" "t" "g" "g" "g" "t" "t" "a" ## [1055] "a" "g" "t" "c" "c" "c" "g" "c" "a" "a" "c" "g" "a" "g" "c" "g" "c" ## [1072] "a" "a" "c" "c" "c" "t" "c" "g" "t" "t" "c" "g" "a" "t" "g" "t" "t" ## [1089] "g" "c" "c" "a" "g" "c" "g" "c" "g" "t" "t" "a" "t" "g" "g" "c" "g" ## [1106] "g" "g" "g" "a" "c" "t" "c" "a" "t" "c" "g" "a" "a" "g" "a" "c" "t" ## [1123] "g" "c" "c" "g" "g" "g" "g" "t" "c" "a" "a" "c" "t" "c" "g" "g" "a" ## [1140] "g" "g" "a" "a" "g" "g" "t" "g" "g" "g" "g" "a" "t" "g" "a" "c" "g" ## [1157] "t" "c" "a" "a" "g" "t" "c" "a" "t" "c" "a" "t" "g" "c" "c" "c" "c" ## [1174] "t" "t" "a" "t" "g" "t" "c" "c" "a" "g" "g" "g" "c" "t" "t" "c" "a" ## [1191] "c" "g" "c" "a" "t" "g" "c" "t" "a" "c" "a" "a" "t" "g" "g" "c" "c" ## [1208] "g" "g" "t" "a" "c" "a" "a" "a" "c" "c" "g" "t" "t" "g" "c" "g" "a" ## [1225] "g" "c" "c" "c" "g" "t" "g" "a" "g" "g" "g" "g" "g" "a" "g" "c" "g" ## [1242] "a" "a" "t" "c" "g" "g" "a" "a" "a" "a" "a" "g" "c" "c" "g" "g" "t" ## [1259] "c" "t" "c" "a" "g" "t" "t" "c" "g" "g" "a" "t" "c" "g" "g" "g" "g" ## [1276] "t" "c" "t" "g" "c" "a" "a" "c" "t" "c" "g" "a" "c" "c" "c" "c" "g" ## [1293] "t" "g" "a" "a" "g" "c" "t" "g" "g" "a" "a" "t" "c" "g" "c" "t" "a" ## [1310] "g" "t" "a" "a" "t" "c" "g" "c" "g" "g" "a" "t" "c" "a" "g" "c" "a" ## [1327] "t" "g" "c" "c" "g" "c" "g" "g" "t" "g" "a" "a" "t" "a" "c" "g" "t" ## [1344] "t" "c" "c" "c" "g" "g" "g" "c" "c" "t" "t" "g" "t" "a" "c" "a" "c" ## [1361] "a" "c" "c" "g" "c" "c" "c" "g" "t" "c" "a" "c" "a" "c" "c" "a" "t" ## [1378] "g" "g" "g" "a" "g" "t" "c" "g" "g" "t" "t" "g" "t" "a" "c" "c" "g" ## [1395] "g" "a" "a" "g" "t" "g" "a" "g" "c" "g" "t" "g" "c" "c" "a" "a" "c" ## [1412] "c" "c" "g" "t" "g" "a" "g" "g" "g" "g" "g" "g" "c" "a" "a" "c" "t" ## [1429] "c" "c" "c" "c" "a" "g" "g" "g" "t" "a" "c" "g" "a" "c" "t" "g" "g" ## [1446] "t" "a" "a" "c" "c" "g" "g" "g" "g" "t" "g" "a" "a" "g" "t" "c" "g" ## [1463] "t" "a" ## attr(,"name") ## [1] "24.6jsd5.Tut" ## attr(,"Annot") ## [1] ">24.6jsd5.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd6.Tut` ## [1] "g" "a" "g" "t" "t" "t" "g" "a" "t" "c" "a" "t" "g" "g" "c" "t" "c" ## [18] "a" "g" "g" "a" "c" "g" "a" "a" "c" "g" "c" "t" "g" "g" "c" "g" "g" ## [35] "c" "g" "c" "g" "c" "t" "t" "a" "a" "c" "a" "c" "a" "t" "g" "c" "a" ## [52] "a" "g" "t" "c" "g" "a" "g" "c" "g" "a" "t" "a" "a" "c" "c" "a" "t" ## [69] "g" "g" "c" "t" "t" "c" "g" "g" "c" "c" "a" "t" "g" "g" "g" "g" "a" ## [86] "g" "a" "g" "c" "g" "g" "c" "g" "a" "a" "c" "g" "g" "g" "t" "g" "a" ## [103] "g" "t" "a" "a" "c" "a" "c" "g" "t" "g" "a" "g" "c" "g" "a" "t" "c" ## [120] "t" "g" "c" "c" "c" "t" "c" "g" "a" "c" "a" "c" "t" "g" "g" "g" "a" ## [137] "t" "a" "g" "c" "c" "c" "g" "g" "g" "g" "a" "a" "a" "c" "c" "c" "g" ## [154] "g" "a" "t" "t" "a" "a" "t" "a" "c" "c" "g" "g" "a" "t" "a" "g" "c" ## [171] "c" "t" "c" "t" "c" "g" "a" "g" "c" "c" "c" "a" "c" "g" "g" "g" "c" ## [188] "t" "c" "g" "t" "g" "a" "g" "a" "a" "a" "a" "g" "a" "t" "g" "g" "c" ## [205] "t" "t" "c" "g" "g" "c" "t" "t" "t" "c" "g" "g" "t" "t" "g" "a" "g" ## [222] "g" "a" "g" "g" "a" "g" "c" "t" "t" "g" "c" "g" "g" "c" "g" "g" "a" ## [239] "t" "t" "a" "g" "c" "t" "t" "g" "t" "t" "g" "g" "t" "g" "a" "g" "g" ## [256] "t" "a" "a" "c" "g" "g" "c" "t" "c" "a" "c" "c" "a" "a" "g" "g" "c" ## [273] "g" "a" "c" "g" "a" "t" "c" "c" "g" "t" "a" "g" "c" "t" "g" "g" "t" ## [290] "c" "t" "g" "a" "g" "a" "g" "g" "a" "c" "g" "a" "t" "c" "a" "g" "c" ## [307] "c" "a" "c" "a" "c" "t" "g" "g" "g" "a" "c" "t" "g" "a" "g" "a" "c" ## [324] "a" "c" "g" "g" "c" "c" "c" "a" "g" "a" "c" "t" "c" "c" "t" "a" "c" ## [341] "g" "g" "g" "a" "g" "g" "c" "a" "g" "c" "a" "g" "t" "g" "g" "g" "g" ## [358] "a" "a" "t" "c" "t" "t" "g" "c" "g" "c" "a" "a" "t" "g" "g" "g" "c" ## [375] "g" "a" "a" "a" "g" "c" "c" "t" "g" "a" "c" "g" "c" "a" "g" "c" "g" ## [392] "a" "c" "g" "c" "c" "g" "c" "g" "t" "g" "a" "g" "g" "g" "a" "a" "g" ## [409] "a" "a" "g" "g" "c" "c" "t" "t" "c" "g" "g" "g" "t" "t" "g" "t" "a" ## [426] "a" "a" "c" "c" "t" "c" "t" "t" "t" "c" "a" "g" "g" "a" "g" "g" "g" ## [443] "a" "c" "g" "a" "a" "g" "c" "c" "a" "c" "t" "c" "g" "g" "g" "t" "t" ## [460] "a" "a" "t" "a" "c" "c" "c" "c" "a" "g" "a" "g" "g" "g" "t" "g" "a" ## [477] "c" "g" "g" "t" "a" "c" "c" "t" "c" "c" "a" "g" "a" "a" "g" "a" "a" ## [494] "g" "c" "c" "c" "c" "g" "g" "c" "t" "a" "a" "c" "t" "a" "c" "g" "t" ## [511] "g" "c" "c" "a" "g" "c" "a" "g" "c" "c" "g" "c" "g" "g" "t" "a" "a" ## [528] "t" "a" "c" "g" "t" "a" "g" "g" "g" "g" "g" "c" "a" "a" "g" "c" "g" ## [545] "t" "t" "g" "t" "c" "c" "g" "g" "g" "g" "t" "c" "a" "t" "t" "g" "g" ## [562] "g" "c" "g" "t" "a" "a" "a" "g" "c" "g" "c" "c" "c" "a" "t" "a" "g" ## [579] "g" "c" "g" "g" "c" "c" "a" "g" "a" "t" "a" "a" "g" "t" "c" "c" "g" ## [596] "c" "t" "g" "t" "g" "a" "a" "a" "a" "c" "t" "c" "g" "a" "g" "g" "c" ## [613] "t" "c" "a" "a" "c" "t" "t" "c" "g" "a" "g" "c" "t" "g" "t" "c" "g" ## [630] "g" "t" "g" "g" "a" "a" "a" "c" "t" "a" "t" "c" "t" "g" "g" "c" "t" ## [647] "a" "g" "a" "g" "t" "c" "c" "g" "g" "a" "a" "a" "g" "a" "g" "a" "g" ## [664] "a" "g" "t" "g" "g" "a" "a" "t" "t" "c" "c" "t" "g" "g" "t" "g" "t" ## [681] "a" "g" "c" "g" "g" "t" "g" "a" "a" "a" "t" "g" "c" "g" "c" "a" "g" ## [698] "a" "t" "a" "t" "c" "a" "g" "g" "a" "a" "g" "a" "a" "c" "a" "c" "c" ## [715] "c" "g" "t" "g" "g" "c" "g" "a" "a" "g" "g" "c" "g" "g" "c" "t" "c" ## [732] "t" "c" "t" "g" "g" "g" "a" "c" "g" "g" "t" "a" "c" "t" "g" "a" "c" ## [749] "g" "c" "t" "g" "a" "g" "a" "c" "g" "c" "g" "a" "a" "a" "g" "c" "g" ## [766] "t" "g" "g" "g" "g" "a" "g" "c" "g" "a" "a" "c" "a" "g" "g" "a" "t" ## [783] "t" "a" "g" "a" "t" "a" "c" "c" "c" "t" "g" "g" "t" "a" "g" "t" "c" ## [800] "c" "a" "c" "g" "c" "c" "g" "t" "a" "a" "a" "c" "g" "a" "t" "g" "g" ## [817] "g" "a" "a" "c" "t" "a" "g" "g" "t" "g" "t" "g" "g" "g" "c" "g" "g" ## [834] "t" "g" "t" "c" "g" "a" "c" "t" "c" "c" "g" "t" "c" "t" "g" "t" "g" ## [851] "c" "c" "g" "a" "a" "g" "c" "t" "a" "a" "c" "g" "c" "a" "t" "t" "a" ## [868] "a" "g" "t" "t" "c" "c" "c" "c" "g" "c" "c" "t" "g" "g" "g" "g" "a" ## [885] "g" "t" "a" "c" "g" "g" "c" "c" "g" "c" "a" "a" "g" "g" "c" "t" "a" ## [902] "a" "a" "a" "c" "t" "c" "a" "a" "a" "g" "g" "a" "a" "t" "t" "g" "a" ## [919] "c" "g" "g" "g" "g" "g" "c" "c" "c" "g" "c" "a" "c" "a" "a" "g" "c" ## [936] "a" "g" "c" "g" "g" "a" "g" "c" "a" "t" "g" "t" "g" "g" "t" "t" "c" ## [953] "a" "a" "t" "t" "c" "g" "a" "c" "g" "c" "a" "a" "c" "g" "c" "g" "a" ## [970] "a" "g" "a" "a" "c" "c" "t" "t" "a" "c" "c" "t" "a" "g" "g" "c" "t" ## [987] "t" "g" "a" "c" "a" "t" "g" "c" "a" "c" "t" "g" "g" "a" "a" "t" "a" ## [1004] "g" "c" "g" "t" "a" "g" "a" "a" "a" "t" "a" "c" "g" "c" "t" "a" "g" ## [1021] "c" "c" "c" "t" "t" "c" "g" "g" "g" "g" "c" "t" "a" "g" "t" "g" "c" ## [1038] "a" "c" "a" "g" "g" "t" "g" "g" "t" "g" "c" "a" "t" "g" "g" "c" "t" ## [1055] "g" "t" "c" "g" "t" "c" "a" "g" "c" "t" "c" "g" "t" "g" "t" "c" "g" ## [1072] "t" "g" "a" "g" "a" "t" "g" "t" "t" "g" "g" "g" "t" "t" "a" "a" "g" ## [1089] "t" "c" "c" "c" "g" "c" "a" "a" "c" "g" "a" "g" "c" "g" "c" "a" "a" ## [1106] "c" "c" "c" "c" "t" "g" "t" "c" "c" "t" "a" "t" "g" "t" "c" "g" "c" ## [1123] "c" "a" "g" "c" "g" "a" "g" "t" "a" "a" "t" "g" "t" "c" "g" "g" "g" ## [1140] "g" "a" "c" "t" "c" "a" "t" "a" "g" "g" "a" "g" "a" "c" "t" "g" "c" ## [1157] "c" "g" "g" "t" "g" "a" "c" "a" "a" "c" "c" "a" "g" "g" "a" "g" "g" ## [1174] "a" "a" "g" "g" "t" "g" "g" "g" "g" "a" "t" "g" "a" "t" "g" "t" "c" ## [1191] "a" "a" "g" "t" "c" "a" "t" "c" "a" "t" "g" "c" "c" "c" "c" "t" "t" ## [1208] "a" "t" "g" "c" "c" "t" "a" "g" "g" "g" "c" "t" "a" "c" "a" "c" "a" ## [1225] "c" "g" "t" "g" "c" "t" "a" "c" "a" "t" "t" "g" "g" "c" "c" "g" "g" ## [1242] "t" "a" "c" "a" "a" "a" "g" "g" "g" "c" "t" "g" "c" "a" "a" "a" "c" ## [1259] "c" "c" "g" "c" "g" "a" "g" "g" "g" "g" "g" "a" "g" "c" "g" "a" "a" ## [1276] "t" "c" "c" "c" "a" "a" "a" "a" "a" "g" "c" "c" "g" "g" "t" "c" "c" ## [1293] "c" "g" "g" "t" "t" "c" "g" "g" "a" "t" "t" "g" "g" "a" "g" "g" "c" ## [1310] "t" "g" "a" "a" "a" "c" "t" "c" "g" "c" "c" "t" "c" "c" "a" "t" "g" ## [1327] "a" "a" "g" "g" "c" "g" "g" "a" "g" "t" "t" "g" "c" "t" "a" "g" "t" ## [1344] "a" "a" "t" "c" "g" "c" "g" "g" "a" "t" "c" "a" "g" "c" "a" "a" "t" ## [1361] "g" "c" "c" "g" "c" "g" "g" "t" "g" "a" "a" "t" "a" "c" "g" "t" "t" ## [1378] "c" "c" "c" "g" "g" "g" "c" "c" "t" "t" "g" "t" "a" "c" "a" "c" "a" ## [1395] "c" "c" "g" "c" "c" "c" "g" "t" "c" "a" "c" "a" "c" "c" "a" "t" "g" ## [1412] "g" "a" "a" "g" "c" "c" "g" "g" "t" "a" "t" "c" "a" "c" "c" "c" "g" ## [1429] "a" "a" "g" "c" "c" "g" "g" "t" "g" "g" "c" "c" "t" "a" "a" "c" "c" ## [1446] "c" "g" "c" "a" "a" "g" "g" "g" "a" "g" "g" "g" "a" "g" "c" "c" "g" ## [1463] "t" "c" "g" "a" "a" "g" "g" "t" "g" "g" "g" "a" "t" "t" "g" "g" "t" ## [1480] "g" "a" "c" "t" "g" "g" "g" "g" "t" "g" "a" "a" "g" "t" "c" "g" "t" ## [1497] "a" "a" "c" "a" "a" "g" "g" "t" "a" "a" ## attr(,"name") ## [1] "24.6jsd6.Tut" ## attr(,"Annot") ## [1] ">24.6jsd6.Tut " ## attr(,"class") ## [1] "SeqFastadna"
SeqinR - Read Fasta
library(seqinr)
setwd("/Users/jagonzalez/SpiderOak Hive/work/Courses/Bioinformatics/data")
list.files()
## [1] "biocond1.png" "UnAligSeq24606.txt"
my_fasta <- read.fasta("UnAligSeq24606.txt", as.string=TRUE)
head(my_fasta)
## $`24.6jsd1.Tut` ## [1] "ttggagagtttgatcctggctcaggatgaacgctggcggcgtgcctaatacatgcaagtcgagcgaatggattaagagcttgctcttatgaagttagcggcggacgggtgagtaacacgtgggtaacctgcccataagactgggataactccgggaaaccggggctaataccggataacattttgaaccgcatggttcgaaattgaaaggcggcttcggtcgtcacttatggatggacccgcgtcgcattagctagttggtgaggtaacggctcaccaaggcaacgatgcgtagccgacctgagagggtgatcggccacactgggactgagacacggcccagactcctacgggaggcagcagtagggaatcttccgcaatggacgaaagtctgacggagcaacgccgcgtgagtgatgaaggctttcgggtcgtaaaactctgttgttagggaagaacaagtgctagttgaataagctggcaccttgacggtacctaaccagaaagccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttatccggaattattgggcgtaaagaacgcgcaggtggtttcttaagtctgatgtgaaagcccacggctcaaccgtggagggtcattggaaactgggagacttgagtgcagaagaggaaagtggaattccatgtgtagcggtgaaatgcgtagagatatggaggaacaccagtggcccaggcgactttctggtctgtaactgacactgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaagtgttagagggtttccgccctttagtgctgaagttaaagcattaagcactccgcgtgtggagtacggccgcaaggctgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcctctgacaaccctagagatagggcttctccttcgggagcagagtgacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgatcttagttgccatcattwagttgggcactctaaggtgactgccggtgacaaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggctacacacgtgctacaatggacggtacaaagagctgcaagaccgcgaggtggagctaatctcataaaaccgttctcagttcggattgtaggctgcaactcgcctacatgaagctggaatcgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagtcggtggggtaacctttttggagccagccgcctaaggtgggacagatgattggggtgaagtcgtaacaaggtagccgtatcggaaggtgcggctggatcacctcctttct" ## attr(,"name") ## [1] "24.6jsd1.Tut" ## attr(,"Annot") ## [1] ">24.6jsd1.Tut" ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd2.Tut` ## [1] "ggtgttgatcatggctcaggacaaacgctggcggcgtgcttaatacatgcaagtcgaacgggctaccttcgggtagctagtggcggacgggtgagtaacacgtaggttttctgcccaatagtggggaataacagctcgaaagagttgctaataccgcataagctctcttgcgtgggcaggagaggaaaccccaggagcaattctgggggctataggaggagcctgcggcggattagctagatggtggggtaaaggcctaccatggcgacgatccgtagctggtctgagaggacggccagccacactgggactgagacacggcccagactcctacgggaggcagcagtaaggaatattccacaatggccgaaagcgtgatggagcgaaaccgcgtgcgggaggaagcctttcggggtgtaaaccgcttttaggggagatgaaacgccaccgtaaggtggctaagacagtaccccctgaataagcatcggctaactacgtgccagcagccgcggtaatacgtaggatgcaagcgttgtccggatttactgggcgtaaagcgcgcgcaggcggcaggttaagtaaggtgtgaaatctccctgctcaacggggagggtgcactccagactgaccagctagaggacggtagagggtggtggaattgctggtgtagcggtgaaatgcgtagagatcagcaggaacacccgtggcgaaggcggccacctgggccgtacctgacgctgaggcgcgaaggctaggggagcgaacgggattagataccccggtagtcctagcagtaaacgatgtccactaggtgtggggggttgttgaccccttccgtgccgaagccaacgcattaagtggaccgcctggggagtacggtcgcaagactaaaactcaaaggaattgacggggacccgcacaagcagcggagcgtgtggtttaattcgatgcgacgcgaagaaccttacctgggcttgacatgctatcgcaacaccctgaaaggggtgcctccttcgggacggtagcacagatgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccctgtccttagttgtatatctaaggagactgccggagacaaaccggaggaaggtggggatgacgtcaagtcagcatggctcttacgtccagggctacacatacgctacaatggccgttacagtgagatgccacaccgcgaggtggagcagatctccaaaggcggcctcagttcagattgcactctgcaacccgagtgcatgaagtcggagttgctagtaaccgcgtgtcagcatagcgcggtgaatatgttcccgggtcttgtacacaccgcccgtcacgtcatgggagccggcaacacttcgagtccgtgagctaaccccccctttcgagggtgtgggaggcagcggccgagggtggggctggtgactgggacgaagtcgtaacaaggt" ## attr(,"name") ## [1] "24.6jsd2.Tut" ## attr(,"Annot") ## [1] ">24.6jsd2.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd3.Tut` ## [1] "agtttgatcatggctcagattgaacgctggcggcatgccttacacatgcaagtcgaacggcagcacggggaaggggcaactcttttctggtggcgagtggcaaacgggtgagtaacgcatcggaacgtacccagtagtgggggataacgtaccgaaaggtacgctaataccgcatacgacctgagggtgaaagcgggggacctgtcagagggcctcgcgctattggagcggccgatgtccgattagctagttggtggggtaaaggctcaccaaggctgtgatcggtagctggtctgagaggacgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaattttggacaatgggcgcaagcctgatccagcaatgccgcgtgtgcgaagaaggccttcgggttgtaaagcacttttgtccggaacgaaaagcgcctggctaatacctgggtgcgatgacggtaccggaagaataagcaccggctaactacgtgccagcagccgcggtaatacgtagggggcaagcgttgtccggaattattgggcgtaaagcgcgcgcaggcggttttgtaagtttggtgtctaagactggggctcaaccctggaacgcaccgaaaactgcaagacttgagtgcaggagaggaaagtggaattccacgtgtagcggtgaaatgcgtagagatgtggaggaacaccagtggcccaggcgactttctggactgtaactgacgctgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgaatgctaggtgttattggtttccatgccttaggtgccgaagttaacacagtaagcattccgcctggggagtacggccgcaaggctgaaactcaaaggaattgacggggacccgcacaagcagtggagtatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcccgatgaaagcattagagatagtgcccctcttcggagcattggagacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgatcttagttgccagcacgtgaggtgggcactctaagatgactgccggtgacaaaccggaggaaggtggttatgacgtcaaatcatcatgccccttatgacctgggctacacacgtactacaatggccggtacaacgggaagcgaaggagcgatccggagccacccccagcaaagccggtctcagttcggattgcaggctgcaactcgcctgcatgaagtcggaattgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccacgagagcttacaacacccgaagtcggtggggtaacccgcaagggagccagccgccgaaggtggggtagatgattggggtgaagtcgtaacaaggtaacc" ## attr(,"name") ## [1] "24.6jsd3.Tut" ## attr(,"Annot") ## [1] ">24.6jsd3.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd4.Tut` ## [1] "gagtttgatcatggctcaggacgactcctggcggcgtgcctaatacatgcaagtcgagcgaatctgagggagcttgctcccaaagattagcggcggacgggtgagtaacacgtgggcaacctgcctgtaagactgggataacttcgggaaaccggagctaataccggataattcttatcaacacatgttgataagctaaaagacggcgtaagctgtcacttacagatgggcccgcggcgcattagctagttggtaaggtaatggcttaccaaggcaacgatgcgtagccgacctgagagggtgatcggccacactgggactgagacacggcccagactcctacgggaggcagcagtagggaatcttccgcaatggacgaaagtctgacggagcaacgccgcgtgagtgatgaaggttttcggatcgtaaaactctgttgttagggaagaacaagtacgagagtaactgctcgtaccttgacggtacctaaccagaaagccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttgtccggaattattgggcgtaaagcgcgcgcaggcggtcctttaagtctgatgtgaaagcccacggctcaaccgtggagggtcattggaaactgggggacttgagtgcaggagagaagagtggaattccacgtgtagcggtgaaccacgtagagatgtggaggaacaccagtggcgaaggcgactctttggcctgtaactgacgctgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaagtgttagagggtttccgccctttagtgctgaagtaaacgcattaagcactccgcctggggagtacggccgcaaggctgaaactcaaaggaattgacggggacccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcctctgaccaccctagagatagggccttccccttcgggggacagagtgacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgtccttagttgccagcattcagttgggcactctaaggagactgccggtgacaaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggctacacacgtgctacaatggatggtacaaagggaaacgaagccgtgaggtgtagctaatcccataaaaccattctcagttcggattgtaggctgcaactcgcctacatgaagccggaatcgctagtaatcgtggatcagcatgccacggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagtcggtggggtaaccatttggagccagccgcctaaggtgggacagatgattggcgtgaagtcgtaacaaggtaacc" ## attr(,"name") ## [1] "24.6jsd4.Tut" ## attr(,"Annot") ## [1] ">24.6jsd4.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd5.Tut` ## [1] "ggaaccatcatggctcaggacgaacgcaggcggcgtgcttaacacatgcaagtcgagcggaaaggcccttcggggtactcgagcggcgaacgggtgagtaacacgtgagtaacctgccccagactttgggataaccctcggaaacgggggctaataccggatatgactgctgatcgcatggttggtggtggaaagtttttcggtttgggatgggctcgcggcctatcagcttgttggtggggtgatggcctaccaaggcgacgacgggtagccggcctgagagggcgaccggccacactggggctgagacacggcccagactcctacgggaggcagcagtggggaatattgcacaatgggcggaagcctgatgcagcgacgccgcgtgagggatgacggccttcgggttgccaacctctttcagcagggacgaagcgtaagtgacggtacctgcagaagaagcgccggccaactacgtgccagcagccgcggtaagacgtagggcgcgagcgttgtccggatttattgngcgtaaagagctcgtaggcggcttgtcgcgtcgaccgtgaaaacttggggctcaaccccaagcctgcggtcgatacgggcagagtagagttcggtaggggagactggaattcctggtgtagcggtgaaatgcgcagatatcaggaggacaccccggtggcgaaggcgggtctctgggccgatactgacgctgaggagcgaaagcgtggggagcgaacaggattagataccctggtagtccacgctgtaaacgttgggcgctaggtgtggggggcctctccggttctctgtgccgcagctaacgcattaagcgccccgcctggggagtacggccgcaaggctaaaactcaaaggaattgacgggggcccgcacaagcggcggagcatgcggattaattcgatgcaacgcgaagaaccttacctgggtttgacatggccgcaaaactgtcagagatggcaggtccttcgggggcggtcacaggtggtgcatggctgtcgttttctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaaccctcgttcgatgttgccagcgcgttatggcggggactcatcgaagactgccggggtcaactcggaggaaggtggggatgacgtcaagtcatcatgccccttatgtccagggcttcacgcatgctacaatggccggtacaaaccgttgcgagcccgtgagggggagcgaatcggaaaaagccggtctcagttcggatcggggtctgcaactcgaccccgtgaagctggaatcgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtcggttgtaccggaagtgagcgtgccaacccgtgaggggggcaactccccagggtacgactggtaaccggggtgaagtcgta" ## attr(,"name") ## [1] "24.6jsd5.Tut" ## attr(,"Annot") ## [1] ">24.6jsd5.Tut " ## attr(,"class") ## [1] "SeqFastadna" ## ## $`24.6jsd6.Tut` ## [1] "gagtttgatcatggctcaggacgaacgctggcggcgcgcttaacacatgcaagtcgagcgataaccatggcttcggccatggggagagcggcgaacgggtgagtaacacgtgagcgatctgccctcgacactgggatagcccggggaaacccggattaataccggatagcctctcgagcccacgggctcgtgagaaaagatggcttcggctttcggttgaggaggagcttgcggcggattagcttgttggtgaggtaacggctcaccaaggcgacgatccgtagctggtctgagaggacgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaatcttgcgcaatgggcgaaagcctgacgcagcgacgccgcgtgagggaagaaggccttcgggttgtaaacctctttcaggagggacgaagccactcgggttaataccccagagggtgacggtacctccagaagaagccccggctaactacgtgccagcagccgcggtaatacgtagggggcaagcgttgtccggggtcattgggcgtaaagcgcccataggcggccagataagtccgctgtgaaaactcgaggctcaacttcgagctgtcggtggaaactatctggctagagtccggaaagagagagtggaattcctggtgtagcggtgaaatgcgcagatatcaggaagaacacccgtggcgaaggcggctctctgggacggtactgacgctgagacgcgaaagcgtggggagcgaacaggattagataccctggtagtccacgccgtaaacgatgggaactaggtgtgggcggtgtcgactccgtctgtgccgaagctaacgcattaagttccccgcctggggagtacggccgcaaggctaaaactcaaaggaattgacgggggcccgcacaagcagcggagcatgtggttcaattcgacgcaacgcgaagaaccttacctaggcttgacatgcactggaatagcgtagaaatacgctagcccttcggggctagtgcacaggtggtgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccctgtcctatgtcgccagcgagtaatgtcggggactcataggagactgccggtgacaaccaggaggaaggtggggatgatgtcaagtcatcatgccccttatgcctagggctacacacgtgctacattggccggtacaaagggctgcaaacccgcgagggggagcgaatcccaaaaagccggtcccggttcggattggaggctgaaactcgcctccatgaaggcggagttgctagtaatcgcggatcagcaatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatggaagccggtatcacccgaagccggtggcctaacccgcaagggagggagccgtcgaaggtgggattggtgactggggtgaagtcgtaacaaggtaa" ## attr(,"name") ## [1] "24.6jsd6.Tut" ## attr(,"Annot") ## [1] ">24.6jsd6.Tut " ## attr(,"class") ## [1] "SeqFastadna"
SeqinR - Información
str(my_fasta)
## List of 22 ## $ 24.6jsd1.Tut :Class 'SeqFastadna' atomic [1:1] ttggagagtttgatcctggctcaggatgaacgctggcggcgtgcctaatacatgcaagtcgagcgaatggattaagagcttgctcttatgaagttagcggcggacgggtgagtaacacgtgggtaacctgcccataagactgggataactccgggaaaccggggctaataccggataacattttgaaccgcatggttcgaaattgaaaggcggcttcggtcgtcacttatggatggacccgcgtcgcattagctagttggtgaggtaacggctcaccaaggcaacgatgcgtagccgacctgagagggtgatcggccacactgggactgagacacggcccagactcctacgggaggcagcagtagggaatcttccgcaatggacgaaagtctgacggagcaacgccgcgtgagtgatgaaggctttcgggtcgtaaaactctgttgttagggaagaacaagtgctagttgaataagctggcaccttgacggtacctaaccagaaagccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttatccggaattattgggcgtaaagaacgcgcaggtggtttcttaagtctgatgtgaaagcccacggctcaaccgtggagggtcattggaaactgggagacttgagtgcagaagaggaaagtggaattccatgtgtagcggtgaaatgcgtagagatatggaggaacaccagtggcccaggcgactttctggtctgtaactgacactgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaagtgttagagggtttccgccctttagtgctgaagttaaagcattaagcactccgcgtgtggagtacggccgcaaggctgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcctctgacaaccctagagatagggcttctccttcgggagcagagtgacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgatcttagttgccatcattwagttgggcactctaaggtgactgccggtgacaaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggctacacacgtgctacaatggacggtacaaagagctgcaagaccgcgaggtggagctaatctcataaaaccgttctcagttcggattgtaggctgcaactcgcctacatgaagctggaatcgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagtcggtggggtaacctttttggagccagccgcctaaggtgggacagatgattggggtgaagtcgtaacaaggtagccgtatcggaaggtgcggctggatcacctcctttct ## .. ..- attr(*, "name")= chr "24.6jsd1.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd1.Tut" ## $ 24.6jsd2.Tut :Class 'SeqFastadna' atomic [1:1] ggtgttgatcatggctcaggacaaacgctggcggcgtgcttaatacatgcaagtcgaacgggctaccttcgggtagctagtggcggacgggtgagtaacacgtaggttttctgcccaatagtggggaataacagctcgaaagagttgctaataccgcataagctctcttgcgtgggcaggagaggaaaccccaggagcaattctgggggctataggaggagcctgcggcggattagctagatggtggggtaaaggcctaccatggcgacgatccgtagctggtctgagaggacggccagccacactgggactgagacacggcccagactcctacgggaggcagcagtaaggaatattccacaatggccgaaagcgtgatggagcgaaaccgcgtgcgggaggaagcctttcggggtgtaaaccgcttttaggggagatgaaacgccaccgtaaggtggctaagacagtaccccctgaataagcatcggctaactacgtgccagcagccgcggtaatacgtaggatgcaagcgttgtccggatttactgggcgtaaagcgcgcgcaggcggcaggttaagtaaggtgtgaaatctccctgctcaacggggagggtgcactccagactgaccagctagaggacggtagagggtggtggaattgctggtgtagcggtgaaatgcgtagagatcagcaggaacacccgtggcgaaggcggccacctgggccgtacctgacgctgaggcgcgaaggctaggggagcgaacgggattagataccccggtagtcctagcagtaaacgatgtccactaggtgtggggggttgttgaccccttccgtgccgaagccaacgcattaagtggaccgcctggggagtacggtcgcaagactaaaactcaaaggaattgacggggacccgcacaagcagcggagcgtgtggtttaattcgatgcgacgcgaagaaccttacctgggcttgacatgctatcgcaacaccctgaaaggggtgcctccttcgggacggtagcacagatgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccctgtccttagttgtatatctaaggagactgccggagacaaaccggaggaaggtggggatgacgtcaagtcagcatggctcttacgtccagggctacacatacgctacaatggccgttacagtgagatgccacaccgcgaggtggagcagatctccaaaggcggcctcagttcagattgcactctgcaacccgagtgcatgaagtcggagttgctagtaaccgcgtgtcagcatagcgcggtgaatatgttcccgggtcttgtacacaccgcccgtcacgtcatgggagccggcaacacttcgagtccgtgagctaaccccccctttcgagggtgtgggaggcagcggccgagggtggggctggtgactgggacgaagtcgtaacaaggt ## .. ..- attr(*, "name")= chr "24.6jsd2.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd2.Tut " ## $ 24.6jsd3.Tut :Class 'SeqFastadna' atomic [1:1] agtttgatcatggctcagattgaacgctggcggcatgccttacacatgcaagtcgaacggcagcacggggaaggggcaactcttttctggtggcgagtggcaaacgggtgagtaacgcatcggaacgtacccagtagtgggggataacgtaccgaaaggtacgctaataccgcatacgacctgagggtgaaagcgggggacctgtcagagggcctcgcgctattggagcggccgatgtccgattagctagttggtggggtaaaggctcaccaaggctgtgatcggtagctggtctgagaggacgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaattttggacaatgggcgcaagcctgatccagcaatgccgcgtgtgcgaagaaggccttcgggttgtaaagcacttttgtccggaacgaaaagcgcctggctaatacctgggtgcgatgacggtaccggaagaataagcaccggctaactacgtgccagcagccgcggtaatacgtagggggcaagcgttgtccggaattattgggcgtaaagcgcgcgcaggcggttttgtaagtttggtgtctaagactggggctcaaccctggaacgcaccgaaaactgcaagacttgagtgcaggagaggaaagtggaattccacgtgtagcggtgaaatgcgtagagatgtggaggaacaccagtggcccaggcgactttctggactgtaactgacgctgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgaatgctaggtgttattggtttccatgccttaggtgccgaagttaacacagtaagcattccgcctggggagtacggccgcaaggctgaaactcaaaggaattgacggggacccgcacaagcagtggagtatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcccgatgaaagcattagagatagtgcccctcttcggagcattggagacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgatcttagttgccagcacgtgaggtgggcactctaagatgactgccggtgacaaaccggaggaaggtggttatgacgtcaaatcatcatgccccttatgacctgggctacacacgtactacaatggccggtacaacgggaagcgaaggagcgatccggagccacccccagcaaagccggtctcagttcggattgcaggctgcaactcgcctgcatgaagtcggaattgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccacgagagcttacaacacccgaagtcggtggggtaacccgcaagggagccagccgccgaaggtggggtagatgattggggtgaagtcgtaacaaggtaacc ## .. ..- attr(*, "name")= chr "24.6jsd3.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd3.Tut " ## $ 24.6jsd4.Tut :Class 'SeqFastadna' atomic [1:1] gagtttgatcatggctcaggacgactcctggcggcgtgcctaatacatgcaagtcgagcgaatctgagggagcttgctcccaaagattagcggcggacgggtgagtaacacgtgggcaacctgcctgtaagactgggataacttcgggaaaccggagctaataccggataattcttatcaacacatgttgataagctaaaagacggcgtaagctgtcacttacagatgggcccgcggcgcattagctagttggtaaggtaatggcttaccaaggcaacgatgcgtagccgacctgagagggtgatcggccacactgggactgagacacggcccagactcctacgggaggcagcagtagggaatcttccgcaatggacgaaagtctgacggagcaacgccgcgtgagtgatgaaggttttcggatcgtaaaactctgttgttagggaagaacaagtacgagagtaactgctcgtaccttgacggtacctaaccagaaagccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttgtccggaattattgggcgtaaagcgcgcgcaggcggtcctttaagtctgatgtgaaagcccacggctcaaccgtggagggtcattggaaactgggggacttgagtgcaggagagaagagtggaattccacgtgtagcggtgaaccacgtagagatgtggaggaacaccagtggcgaaggcgactctttggcctgtaactgacgctgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaagtgttagagggtttccgccctttagtgctgaagtaaacgcattaagcactccgcctggggagtacggccgcaaggctgaaactcaaaggaattgacggggacccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcctctgaccaccctagagatagggccttccccttcgggggacagagtgacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgtccttagttgccagcattcagttgggcactctaaggagactgccggtgacaaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggctacacacgtgctacaatggatggtacaaagggaaacgaagccgtgaggtgtagctaatcccataaaaccattctcagttcggattgtaggctgcaactcgcctacatgaagccggaatcgctagtaatcgtggatcagcatgccacggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagtcggtggggtaaccatttggagccagccgcctaaggtgggacagatgattggcgtgaagtcgtaacaaggtaacc ## .. ..- attr(*, "name")= chr "24.6jsd4.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd4.Tut " ## $ 24.6jsd5.Tut :Class 'SeqFastadna' atomic [1:1] ggaaccatcatggctcaggacgaacgcaggcggcgtgcttaacacatgcaagtcgagcggaaaggcccttcggggtactcgagcggcgaacgggtgagtaacacgtgagtaacctgccccagactttgggataaccctcggaaacgggggctaataccggatatgactgctgatcgcatggttggtggtggaaagtttttcggtttgggatgggctcgcggcctatcagcttgttggtggggtgatggcctaccaaggcgacgacgggtagccggcctgagagggcgaccggccacactggggctgagacacggcccagactcctacgggaggcagcagtggggaatattgcacaatgggcggaagcctgatgcagcgacgccgcgtgagggatgacggccttcgggttgccaacctctttcagcagggacgaagcgtaagtgacggtacctgcagaagaagcgccggccaactacgtgccagcagccgcggtaagacgtagggcgcgagcgttgtccggatttattgngcgtaaagagctcgtaggcggcttgtcgcgtcgaccgtgaaaacttggggctcaaccccaagcctgcggtcgatacgggcagagtagagttcggtaggggagactggaattcctggtgtagcggtgaaatgcgcagatatcaggaggacaccccggtggcgaaggcgggtctctgggccgatactgacgctgaggagcgaaagcgtggggagcgaacaggattagataccctggtagtccacgctgtaaacgttgggcgctaggtgtggggggcctctccggttctctgtgccgcagctaacgcattaagcgccccgcctggggagtacggccgcaaggctaaaactcaaaggaattgacgggggcccgcacaagcggcggagcatgcggattaattcgatgcaacgcgaagaaccttacctgggtttgacatggccgcaaaactgtcagagatggcaggtccttcgggggcggtcacaggtggtgcatggctgtcgttttctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaaccctcgttcgatgttgccagcgcgttatggcggggactcatcgaagactgccggggtcaactcggaggaaggtggggatgacgtcaagtcatcatgccccttatgtccagggcttcacgcatgctacaatggccggtacaaaccgttgcgagcccgtgagggggagcgaatcggaaaaagccggtctcagttcggatcggggtctgcaactcgaccccgtgaagctggaatcgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtcggttgtaccggaagtgagcgtgccaacccgtgaggggggcaactccccagggtacgactggtaaccggggtgaagtcgta ## .. ..- attr(*, "name")= chr "24.6jsd5.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd5.Tut " ## $ 24.6jsd6.Tut :Class 'SeqFastadna' atomic [1:1] gagtttgatcatggctcaggacgaacgctggcggcgcgcttaacacatgcaagtcgagcgataaccatggcttcggccatggggagagcggcgaacgggtgagtaacacgtgagcgatctgccctcgacactgggatagcccggggaaacccggattaataccggatagcctctcgagcccacgggctcgtgagaaaagatggcttcggctttcggttgaggaggagcttgcggcggattagcttgttggtgaggtaacggctcaccaaggcgacgatccgtagctggtctgagaggacgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaatcttgcgcaatgggcgaaagcctgacgcagcgacgccgcgtgagggaagaaggccttcgggttgtaaacctctttcaggagggacgaagccactcgggttaataccccagagggtgacggtacctccagaagaagccccggctaactacgtgccagcagccgcggtaatacgtagggggcaagcgttgtccggggtcattgggcgtaaagcgcccataggcggccagataagtccgctgtgaaaactcgaggctcaacttcgagctgtcggtggaaactatctggctagagtccggaaagagagagtggaattcctggtgtagcggtgaaatgcgcagatatcaggaagaacacccgtggcgaaggcggctctctgggacggtactgacgctgagacgcgaaagcgtggggagcgaacaggattagataccctggtagtccacgccgtaaacgatgggaactaggtgtgggcggtgtcgactccgtctgtgccgaagctaacgcattaagttccccgcctggggagtacggccgcaaggctaaaactcaaaggaattgacgggggcccgcacaagcagcggagcatgtggttcaattcgacgcaacgcgaagaaccttacctaggcttgacatgcactggaatagcgtagaaatacgctagcccttcggggctagtgcacaggtggtgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccctgtcctatgtcgccagcgagtaatgtcggggactcataggagactgccggtgacaaccaggaggaaggtggggatgatgtcaagtcatcatgccccttatgcctagggctacacacgtgctacattggccggtacaaagggctgcaaacccgcgagggggagcgaatcccaaaaagccggtcccggttcggattggaggctgaaactcgcctccatgaaggcggagttgctagtaatcgcggatcagcaatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatggaagccggtatcacccgaagccggtggcctaacccgcaagggagggagccgtcgaaggtgggattggtgactggggtgaagtcgtaacaaggtaa ## .. ..- attr(*, "name")= chr "24.6jsd6.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd6.Tut " ## $ 24.6jsd7.Tut :Class 'SeqFastadna' atomic [1:1] gagaatgatcatggctcaggacgaacgctggcggcgtgcttaacacatgcaagtggagcgacgaaccggggcttgccccggggcagagccgcgaacgggtgagtaacacgtgggtaacccaccccgatgaccgggacaacccgaggaaactcgggctaataccggatgtgctccttgtcttcgaggacaaggcgtaaagatagcttcggccttcgcatcggaacgggcccgcggcccattagcttgttggtggggtaacggcctaccaaggcgacgatgggtagctggtctgagaggacgatcagccacactgggactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatgggcgaaagcctgacggagcgacactgcttggaggatgaaggttttcggatcgtaaactcctgaacgagggacgaataatgacggtacctcgctaatagcaccggctaactccgtgccagcagccgcggtaataccgagggtgcgagcgttatccggaatcactgggcgtaaagggcgcgtaggcggtttgttaagtccgatgttaaagaccgaggctcaacctcgacacggcgttggatactggcaagttggacggttggagaggaaggtagaattaccagtgtagcggtggaatgcgtagatactggtaggaatacccattgcgaaggcagccttctggacaacacgtgacgctgaggcgcgaaagtgtggggagcaaaccggattagatacccgggtagtggtcaccctaaacgatgcatacttggtgtcggcccgttggggtcggtgccggagctaacgcgttaagtatgccgcctgggaagtacggccgcaaggttgaaactcaaaggaattgacggggacccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcctagggatctcttagagataagagagtgcccttcggggaacctagagacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgctattagttaccaacacttcgggtgggaactctaataggactgcctgtgaaagcaggaggaaggcggggatgacgtctagtcagcatggtccttacgacctgggctacacacgtgctacaatggcaggtataacgcgtcgccaactcgcgagagtgcgctaatcgctaaaagcctgtcccagttcagattgcagtctgcaactcgactgcatgaagttggaatcgctagtaatcgcagatcagcactgctgcggtgaatacgttcccgggtcttgtacacaccgcccgtcaaaccatgggagtaggttgcacccaaagacgtaacgaagcgtcaatgcggcttgtgtttaaggtgtggcttatgactggggttaagtcgtaacaaggtaacc ## .. ..- attr(*, "name")= chr "24.6jsd7.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd7.Tut " ## $ 24.6jsd8.Tut :Class 'SeqFastadna' atomic [1:1] attgaagagtttgatcatggctcagattgaacgctggcggcaggcttaacacatgcaagtcgaacggtagcaggagaaagcttgctttcttgctgacgagtggcggacgggtgagtaatgcttgggaatctggcttatggagggggataacgacgggaaactgtcgctaataccgcgtattatcggaagatgaaagtgcgggactgagaggccgcatgccataggatgagcccaagtgggattaggtagttggtggggtaaaggcctaccaagcctgcgatctctagctggtctgagaggatgaccagccacactggaactgagacacggtccagactcctacgggaggcagcagtggggaatattgcgcaatggggggaaccctgacgcagccatgccgcgtgaatgaagaaggccttcgggttgtaaagttctttcggtattgaggaaggttgatgtgttaatagcacatcaaattgacgttaaatacagaagaagcaccggctaactccgtgccagcagccgcggtaatacggagggtgcgagcgttaatcggaataactgggcgtaaagggcacgcaggcctttatttaagtgaggtgtgaaagccctgggcttaacctaggaattgcatttcagactgggtaactagagtactttagggaggggtagaattccacgtgtagcggtgaaatgcgtagagatgtggaggaataccgaaggcgaaggcagccccttgggaatgtactgacgctcatgtgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgctgtaaacgctgtcgatttgggggttggggtttaactctggcgcccgtagctaacgtgataaatcgaccgcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaacgcgaagaaccttacctactcttgacatcctagaagagctcagagatgagcttgtgccttcgggaacttagagacaggtgctgcatggctgtcgtcagctcgtgttgtgaaatgttgggttaagtcccgcaacgagcgcaacccttatcctttgttgccagcgatacggtcgggaactcaaaggagactgccagtgataaactggaggaaggtggggatgacgtcaagtcatcatggcccttacgagtagggctacacacgtgctacaatggcgtatacagagggaagcgaagctgcgaggtggagcgaatctcataaagtacccgggaagtccggattggagtctgcaactcgactccatgaagtcggaatcgctagtaatcgcgaatcagaatgtcgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtgggttgtaccagaagtagatagcttaaccttttggagggcgtttaccacggtatgattcatgactggggtgaagtaagtaacaaggtaaccgtaggggaacctgcggttggatcacctcctta ## .. ..- attr(*, "name")= chr "24.6jsd8.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd8.Tut " ## $ 24.6jsd9.Tut :Class 'SeqFastadna' atomic [1:1] gagtttgatcctggctcagaacgaacgcgttcggcaggcctaacacatgcaagtcgaacgcacctttcggggtgagtggcagacgggtgagtaacacgtgggaacgtgcctttcggtttgggataacccagggaaacttgggctaataccgcgtacgccctttgggggaaagattgatttgccgaaagatcggcccgcgtctgattagcttgtccgtgaggtaatggctcaccaaggcgacgatcagtagctggtctgagaggatgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaatattggacaatgggcgcaagcctgatccagccatgccgcgtgagtgatgaaggccctagggttgtaaagctctttcacacgcgacgataatgacggtagcgtgagaagaagccccggctaacttcgtgccagcagccgcggtaatacgaagggggctagcgttgttcggaatcactgggcgtaaagggcgcgtaggcggccgatcaagtcgggggtgaaagcctgtggctcaaccacagaattgccttcgatactgtttggcttgagaccggaagaggttagtggaactgcgagtgtagaggtgaaattcgtagatattcgcaagaacaccagtggcgaaggcggctgactggtccggttctgacgctgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgaatgctagccgttcgcaggcttgcctgtcagtggcgcagctaacgctttaagcattccgcctggggagtacggtcgcaagattaaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgcagaaccttaccagcctttgagatgtccggtttgggccctggagacggggtccttcagttcggctggccggaacacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaaccctcgcccttagttgccatcattgggttgggcactctaaggggactgccggtgataagccgagaggaaggtggggatgacgtcaagtcctcatggcccttacgggctgggctacacacgtgctacaatggcggtgacaatgggcagcgaaggggcgacctggagctaatcccaaaaagccgtctcagttcagattgcactctgcaactcgagtgcatgaaggcggaatcgctagtaatcgtggatcagaacgccacggtgaatacgttcccgggctttgtacacaccgcccgtcacaccatgggagttggtcttacccgacggcgctgcgccaacctgccagggcaacttggttggaggcaggcgaccacggtagggtcagcgactggggtgaagtcgtaacaaggtaacc ## .. ..- attr(*, "name")= chr "24.6jsd9.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd9.Tut " ## $ 24.6jsd10.Tut:Class 'SeqFastadna' atomic [1:1] tggcaaagattgaacgctggcggcatgcctaacacatgcaagtcgaacggtaacaggtcttcggatgctgacgagtggcggacgggtgagtaatgcgtaggaatctgtcttttagtgggggacaacccagggaaacttgggctaataccgcatgagccctgagggggaaagcgggggatcttcggacctcgcgctaagggaggagcctacgtctgattagctagttggtagggtaaaggcctaccaaggcgacgatcagtagctggtctgagagcccgaccagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaatttttcgcaatgggggcaaccctgacgaagcaatgccgcgtggatgaagaaggccttcgggttgtaaagtcctttcgtggaggacgaaaaggcgggttctatcacaatctgctgttgacgtgaatccaagaagaagcaccggctaactccgtgccagcagccgcggtaatacggggggtgcaagcgttaatttgaatcactgggcgtaaagggtgcgtaggcggtacgttaggtctgtcgtgaaatccccgggctcaacctgggaatggcggtggaaaccggcggactagagtatgggagagggtggtggaattccaggtgtagcggtgaaatgcgtagagatctggaggaacatcagtggcgaaggcggccacctggcccaatactgacgctgaggcacgggagcgtggggagcaaacaggattagataccctggtagtccacgccctaaacgatgaatactagatgtttggtgccacgcgtactgagaaaacgtagctaacgcgataagtattccgcctgggaagtacggccgcaaggttaaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaacgcgaagaaccttacctgggcttgacatgtccggaattctgcagagatgcgggagtgcccttcggggaatcggaacacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgtccttagttgccagcggttcggccgggcactctagggagactgccggtgacaaaccggaggaaggtggggatgacgtcaagtcctcatggcctttatgtccagggctacacacgtgctacaatggcgcgtacagagggaagccaagccgcgaggtggagcagaccccagaaagcgcgtcgtagttcggattgcagtctgcaactcgactgcatgaagtcggaatcgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtggatggtaccagaagcagctagc ## .. ..- attr(*, "name")= chr "24.6jsd10.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd10.Tut " ## $ 24.6jsd11.Tut:Class 'SeqFastadna' atomic [1:1] gagtttgatcatggctcaggacgaacgctggcggcgtgcttaacacatgcaagtcgaacggtgaaccttcttcgggaggggatcagtggcgaacgggtgagtaacacgtgggcaacctgccctcagctctgggataactccaagaaattggggctaatactggatatgaccgctgaccgcatggtctggtggtggaaagatttatcggctggggatgggcccgcggcctatcagcttgttggtggggtagtggcctaccaaggcgacgacgggtagccggcctgagagggtgaccggccacactgggactgagacacggcccagactcctacgggagcaagcagtggggaatattgcgcaatgggcggaagcctgacgcagcgacgccgcgtgggggatgacggccttcgggttgtaaacctctttcagcagggacgaagcggaagtgacggtacctgcagaagaagcaccggccaactacgtgccagcagccgcggtaatacgaagggggctagcgttgttcggatttactgggcgtaaagcgcacgtaggcggatctttaagtcagaggtgaaatcccaaggctcaaccttggaactgcctttgatactggggatctcgagtccgggagaggtgagtggaactgcgagtgtagaggcgaaaatcgtagatattcgcaagaacaccagtggcgaaggcggctcactggcccggaactgacgctgaggtgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatggatgctagccgttaggcagcttgctgcttagtggcgcagcaaacgctttaagcatcccgcctggggagtacggtcgcaagattaaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgcagaaccttaccagcttttgacatgccttggacggatagcagagatgctttcttctctaaggagccagggacacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaaccctcgcccttagttgccatcattcagttgggcactctagggggactgccggtgataagccgcgaggaaggtggggatgacgtcaagtcctcatggcccttacaagctgggctacacacgtgctacaatggcgactacagtgggatgcaaaagggcgacctctagcgcatctccaaaagtcgtctcagttcggattgcactctgcaactcgagtgcatgaagttggaatcgctagtaatcgtagatcagaacgctacggtgaatacgttccggggccttgtacacaccgcccgtcacaccatgggagttggctttacccgaaggcgtttcgctaaccgcaagggggcagacgaccacggtagggtcagcgactggggtgaagtcgtaacaaggtaa ## .. ..- attr(*, "name")= chr "24.6jsd11.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd11.Tut " ## $ 24.6jsd12.Tut:Class 'SeqFastadna' atomic [1:1] ttttatggagagtttgatcctggctcagggtgaacgctggcggcgtgcttaagacatgcaagtccctcgcggtcttcggaccgagtggcgcacgggtgagtaacacgtaactgacctacccagaagtcacgaataactggccgaaaggtccgctaatacgtgatgtggtgatgcaccgtggtgcatcactaaagatttatcgcttctggatggggttgcgttccatcagctggttggtggggtaaaggcctaccaaggcgacgacggatagccggcctgagagggtggccggccacaggggcactgagacacgggtcccactcctacgggtggcagcagttaggaatcttccacaatgggcgcaagcctgatggagcgacgccgcgtgagggatgaaggttttcggatcgtaaacctctgaatctgggacgaaagagccttagggcagatgacggtaccagagtaatagcaccggctaactccgtgcccccagccgcggtaatacggagggtgcaagcgttacccggaatcactgggcgtaaagggcgtgtaggcggaaatttaagtctggttttaaagaccggggctcaacctcggggatggactggatactggatttcttgacctctggagaggtaactggaattcctggtgtagcggtggaatgcgtagataccaggaggaacaccaatggcgaaggcaagttactggacagaaggtgacgctgaggcgcgaaagtgtggggagcaaaccggattagatacccgggtagtccacaccctaaacgatgtacgttggctaagcgcaggatgctgtgcttggcgaagctaacgcgataaacgtaccgcctgggaagtacggccgcaaggttgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatgctaggaactttggggagatgcagaggtgcccttcggggaacctagacacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgcctttagttgtcagcattcagttggacactctagagggactgcctatgaaagtaggaggaaggcggggatgacgtctagtcagcatggtccttacgtcctgggcgacacacgtgctacaatgggtaggacaacgcgcagcaaacccgcgagggtaagcgaatcgctaaaacctatccccagttcagatcggagtctgcattcgactccgtgaagttggaatcgctagtaatcgcgggtcagcataccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtagattgcagttgaaaccgccgggagcttaacggcaggcgtctagactgtggtttatgactggggtgaagtcgtaacaaggtaactgtaccggaaggtgcggttagatcacctcctttctcgtgaatgaagaaggccttcgggttgtaaagttctttcggtattgaggaaggttgatgtgttaatagcacatcaaattgacgttaaatacagaagaagcaccggctaactccgtgccagcagccgcggtaatacggagggtgcgagcgttaatcggaataactgggcgtaaagggcacgcaggcggttatttaagtgaggtgtgaaagccctgggcttaacctaggaattgcatttcagactgggtaactagagtactttagggaggggtagaattccacgtgtagcggtgaaatgcgtagagatgtggaggaataccgaaggcgaaggcagccccttgggaatgtactgacgctcatgtgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgctgtaaacgctgtcgatttgggggttggggtttaactctggcgcccgtagctaacgtgataaatcgaccgcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaacgcgaagaaccttacctactcttgacatcctaagaagagctcagagatgagcttgtgccttcgggaacttagagacaggtgctgcatggctgtcgtcagctcgtgttgtgaaatgttgggttaagtcccgcaacgagcgcaacccttatcctttgttgccagcgatacggtcgggaactcaaaggagactgccagtgataaactggaggaaggtggggatgacgtcaagtcatcatggcccttacgagtagggctacacacgtgctacaatggcgtatacagagggaagcgaagctgcgaggtggagcgaatctcataaagtacgtctaagtccggattggagtctgcaactcgactccatgaagtcggaatcgctagtaatcgcgaatcagaatgtcgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtgggttgtaccagaagtagatagcttaaccttttggagggcgtttaccacggtatgattcatgactggggtgaagtcgtaacaaggtaaccgtaggggaacctgcggttggatcacctcctta ## .. ..- attr(*, "name")= chr "24.6jsd12.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd12.Tut " ## $ 24.6jsd13.Tut:Class 'SeqFastadna' atomic [1:1] gtttgatcatggctcaggacgaacgctggcggcgtgcttaacacatgcaagtcgagcggaaaggcccacttgtgggtactcgagcggcgaacgggtgagtaacacgtgagtaatctgcccttcactctgggataacgttcagaaatgggtgctaataccggatgtgcacatggtctcgcatggggttgtgtggaaaggtttttctggtgggggatgtgctcgcggcctatcagcttgttggtggggtaatggcttaccaaggctttgacgggtagccggcctgagagggtgaccggccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaatattggacaatgggcggaagcctgatccagcaacgccgcgtgagggatgacggccttcgggttgtaaacctctttcaccattgacgaagctgcatctttttgggtgtggtgacggtaggtggggaagaagcaccggccaactacgtgccagcagccgcggtaatacgtagggtgcgagcgttgtccggaattattgngcgtaaagggctcgtaggcggtttgtcgcgtcgggagtgaaaacactgggcttaactgggtgcttgctttcgatacgggcagactagaggtatgcaggggagaacgggaattcctggtgtagcggtgaaatgcgcagatatcaggaggaaacaccggtggcgaaaggcggtctctgggcatgatctgacgctgaggagcgaaagtgtggggagcgaacaggattagataccctggtagtccacaccgtaaacgttgggcgctaggtgtgggatccattccacgggttccgtgcgacagctaacgcattaagcgccccgcctggggagtacggccgcaaggctaaaactcaaaggaattgacgggggcccgcacaagcggcggagcatgcggattaattcgatgcaacgcgaagaaccttacctgggtttgacatatgccggaaagcatcagagatggtgcccctttttgtcggtgtacaggtggtgcatggctgtcgccagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaaccctcgttccatgtatccagcaggcccttcggggtgctggggactcatgggagactgccggggtcaactcggaggaaggtggggatgacgtcaagtcatcatgccccttatgtccagggcttcacgcatgccacaatggccggtacaaagggctgcgatgccgtgaggtggagcgaatcccaaaaagccggtctcagttcggattggggtctgcaactcgaccccatgaagttggagtcgctagtaatcgcagatcagcaacgctgcggtgaatacgttcccgggccttgtacacaccgcccgtcacgtcacgaaagtcggcaacacccgaagcccatggcccaaccccttttttggggagggagtggtcgaaggtggggctggcgattgggacgaagtcgtaacaaggtaacc ## .. ..- attr(*, "name")= chr "24.6jsd13.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd13.Tut " ## $ 24.6jsd14.Tut:Class 'SeqFastadna' atomic [1:1] agttccatcctggctcaggacgaacgctggcggcgtgcctaatacatgcaagtgggacgcaaggaaacacactgtgcttgcacaccgcgttttcttgagtcgcgaacgggtgagtaacgcgtaggtaacctgcctattagcgggggataactattggaaacgatagctaataccgcataatattaattattgcatgataattgattgaaagatgcaagcgcatcactagtagatggacctgcgttgtattagctagttggtaaggtaagagcttaccaaggcgacgatacatagccgacctgagagggtgatcggccacactgggacagagacacggcccagactcctacgggaggcagcagtagggaatcttcggcaatggacgaaagtctgagcgagcaacgccgcgtgagtgaagaaggctttcggatcgtaaagctctgttgtaagtcaagaacgtgtgtgagagtggaaagttcacacagtgacggtagcttaccagaaagggacggctaactacgtgccagcagccgcggtaatacgtaggtcccgagcgttgtccggatttattgggcgtaaagggagcgcaggcggtcaggaaagtctggagtaaaaggctatggctcaaccattttgtgctctggaaactgtctgacttgagtgcagaaggggagagtggaattccatgtgtagcggtgaaatgcgtagatatatggaggaacaccagtggcgaaagcggctctctggtctgtcactgacgctgaggctcgaaagcgtgggtagcgaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaggtgttaggccctttccggggcttagtgccggagctaacgcaataagcactccgccggggagtacgaccgcaaggttgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcccgatgctattcttagagataggaagttacttcggtacatcggagacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttattgttagttgccattattaagttgggcactctagcgagactgccggtaataaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggctacacacgtgctacaatggtcggtacaacgagttgcgagccggtgacggcaagctaatctctgaaagccgatctcagttcggattggaggctgcaactcgcctccatgaagtcggaatcgctagtaatcgcggatcagcacgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagtcggtgaggtaaccttttaggggccagccgcctaaggtgggatggatgattggggtgaagtcgtaacaaggtagccgta ## .. ..- attr(*, "name")= chr "24.6jsd14.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd14.Tut " ## $ 24.6jsd15.Tut:Class 'SeqFastadna' atomic [1:1] ggttccttcatggctcaggacgaacgctggcggcgtgcctaatacatgcaagtcgagcgaatcttttaaaagcttgctttttgaaagattagcggcggacgggtgagtaacacgtgggcaacctgcctgtaagactgggataacttgcggaaacgtgagctaataccagatagttttttctcctgcatgggagaaagaggaaagatggctccggctatcacttacagatgggcccgcggcgcattagctagttggtgaggtaatggctcaccaaggcaacgatgcgtagccgacctgagagggtgatcggccacactgggactgagacacggcccagactcctacgggaggcagcagtagggaatcttccgcaatggacgaaagtctgacggagcaacgccgcgtgaacgatgaaggttctcggatcgtaaagttctgttgttagggaagaacaagtatcggagtaactgccggtaccttgacggtacctaacgagaaagccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttgtccggatttattgggcgtaaagcgcgcgcaggcggtcctttaagtctgatgtgaaatcttgcggcttaaccgcaagcggtcattggaaactgggggacttgagtacagaagaggaaagtggaattccacgtgtagcggtgaaatgcgtagagatgtggaggaacaccagtggcgaaggcgactttctggtctgtaactgacgctgaggcgcgaaagcgtggggagcgaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaagtgttggggggcttccacccctcagtgctgcagctaacgcattaagcactccgcctggggagtacggtcgcaagactgaaactcaaaggaattcttgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatctcctgacctccctagagatagggccttccccttcgggggacaggatgacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgtccttagttgccagcattcagttgggcactctaaggagactgccgtaaaaaaacggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggctacacacgtgctacaatggatggtacaaagggcagcaaaaccgcgaggtcaagccaatcccataaaaccattctcagttcggattgcaggctgcaactcgcctgcatacagccggaatcgctagtaatcgcagatcagcatgctgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagtcggtggggtaaccgtaaggagccagccgccgaaggtgggacagatgattggggtgaagtcgtaacag ## .. ..- attr(*, "name")= chr "24.6jsd15.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd15.Tut " ## $ 24.6jsd16.Tut:Class 'SeqFastadna' atomic [1:1] aaattgaagagtttgatcatggctcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagaagcttgcttctttgctgacgagtggcggacgggtgagtaatgtctgggaaactgcctgatggagagggataactactggaaacggtagctaataccgcataacgtcgcaagaccaaagagggggaccttcgggcctcttgccatcgttagtgcccagatgggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatgaccagccacactggaactgagacacggtccagactcctacgggaggcagcagtggggaatattgcacaatgggcgcaagcctgatgcagccatgccgcgtgtatgaagaaggccttcgggttgtagggtactttcagcggggaggaagggagtaaagttaatacctttgctcattgacgttacccgcagaagaagcaccggctaactccgtgccagcagccgcggtaatacggagggtgcaagcgttaatcggaattactgggcgtaaagcgcacgcaggcggtttgttaagtcagatgtgaaatccccgggctcaacctgggaactgcatctgatactggcaagcttgagtctcgtagaggggggtagtattccaggtgtagcggtgaaatgcgtagagatctggaggaataccggtggcgaaggcggcccgctggacgaagactgacgctcaggtgcgaaaacgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgtcgacttggaggttgtgcccttgaggcgtggcttccggagctaacgcgttaagtcgaccgcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaacgcgaagaaccttacctggtcttgacatccacggaagttttcagagatgagaatgtgccttcgggaaccgtgagacaggtgctgcatggctgtcgtcagctcgtgttgtgaaatgttgggttaagtcccgcaacgagcgcaacccttatcctttgttgccagcggtccggccgggaactcaaaggagactgccagtgataaactggaggaaggtggggatgacgtcaagtcatcatggcccttacgaccagggctacacacgtgctacaatggcgcatacaaagagaagcgacctcgcgagagcaagcggacctcataaagtgcgtcgtagtccggattggagtctgcaactcgactccatgaagtcgaaatcgctagtaatcgtggatcagaatgccacggtgaatacgttcccgggcgttgtacacaccgcccgtcacaccatgggagtgggttgcaaaagaagtaggtagcttaaccttcgggagggcgcttaccactttgtgattcatgactggggtgaagtcgtaacaaggtaaccgtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgtctgat ## .. ..- attr(*, "name")= chr "24.6jsd16.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd16.Tut " ## $ 24.6jsd17.Tut:Class 'SeqFastadna' atomic [1:1] gatgaacgctggcggcgtgcttaacacatgcaagtcgaacgggatccatcaagcttgcttggtggtgagagtggcgaacgggtgagtaatgcgtgaccgacctgccccatgctcccgaatagctcctggaaacgggtggtaatgccggatgttccacatgatcgcatgtgattgtgggaaagattctatcggcgtgggatggggtcgcgtcctatcagcttgttggtgaggtaacggctcaccaaggcttcgacgggtagccggcctgagagggcgaccggccacattgggactgagatacggcccagactcctacgggaggcagcagtggggaatattgcacaatgggcgcaagcctgatgcagcgacgccgcgtgagggatggaggccttcgggttgtaaacctcttttgtttgggagcaagccttcgggtgagtgtacctttcgaataagcgccggctaactacgtgccagcagccgcggtaatacgtagggcgcaagcgttatccggatttattgggcgtaaagggctcgtaggcggctcgtcgcgtccggtgtgaaagtccatcgcttaacggtggacctgcgccgggtacgggcgggctggagtgcggtaggggagactggaattcccggtgtaacggtggaatgtgtagatatcgggaagcgcaccgatggcgaaggcaggtctctgggccgtcactgacgctgaggagcgaaagcgtggggagcgagcaggattagataccctggtagtccacgccgtaaacggtggacgctggatgtggggcacgttccacgtgttccgtgtcggagctaacgcgttaagcgtcccgcctggggagtacggccgcaaggctaaaactcaaagaaattgacgggggcccgcacaagcggcggagcatgcggattaattcgatgcaacgcgaagaaccttacctgggcttgacatgttcccgacgacgccagagatggcgtttcccttcggggcgggttcacaggtggtgcatggtcgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaaccctcgccccgtgttgccagcacgttatggtgggaactcacgggggaccgccggggttaactcggaggaaggtggggatgacgtcagatcatcatgccccttacgtccagggcttcacgcatgctacaatggccggtacagcgggatgcgacatggcgacatggagcggatccctgaaaaccggtctcagttcggatcggagcctgcaacccggctccgtgaagttggagtcgctagtaatcgcggatcagcaacgccgcggtgaatgcgttcccgggccttgtacacaccgcccgtcaagtcatgaaagtgggcagcacccgaagccggtggcctaaccccttgtgggatggagccgtctaaggtgaggctcgtgattgggactaagtcgtaacaaggtagccgtaccggaaggtgcggctg ## .. ..- attr(*, "name")= chr "24.6jsd17.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd17.Tut " ## $ 24.6jsd18.Tut:Class 'SeqFastadna' atomic [1:1] acatgcaagtcgagcggcaccgggaagtagtttactactttgccggcgagcggcggacgggtgagtaatgtctggggatctgcctgatggagggggataactactggaaacggtagctaataccgcatgacctcgcaagagcaaagtgggggaccttagggcctcaccgcatcggatgaacccagatgggattagctagtaggtggggtaatggctcacctaggcgacgatccctagctggtctgataggatgaccagccacactggagctgagacacggtccagactcctacgggaggcaccagtggggaatattgcacaatgggcgcaagcctgatgcagccatgccgcgtgtgtgaagaaggccttcgggttgtaaagcactttcagcgaggaggaaggggttgagtttaatacgctcaatcattgacgttactcgcagaataagcaccggctaactccgtgccagcagccgcggagatacggagggtgcaagcgttaatcggaattactgggcgtaaagcgcacgcaggcggtttgttaagtcagatgtgaaatccccgcgcttaacgtgggaactgcatttgaaactggcaagctagagtcttgtagaggggggtagaattccaggtgtagcggtgaaatgcgtagagatctggaggaataccggtggcgaaggcggccccctggacaaagactgacgctcaggtgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgctgtaaacgatgtcgacttggaggatgtgcccagaggcgtggcttccggagctaacgcgttaagtcgaccgcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaacgcgaagaaccttacctactcttgacatccacagaatttggcagagatgctaaagtgccttcgggaactgtgagacaggtgctgcatggctgtcgtcagctcgtgttgtgaaatgttgggttaagtcccgcaacgagcgcaacccttatcctttgttgccagcacgtaatggtgggaactcaagggagactgccggtgacaaaccggaggaaggtggggatgacgtcaagtcatcatggcccttacgagtagggctacacacgtgctacaatggcagatacaaagtgaagcgaactcgcgagagccagcggaccacataaagtctgtcgtagtccggattggagtctgcaactcgactccatgaagtcggaatcgctagtaatcgtagatcagaatgctacggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtggggtgcaaaaga ## .. ..- attr(*, "name")= chr "24.6jsd18.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd18.Tut " ## $ 24.6jsd19.Tut:Class 'SeqFastadna' atomic [1:1] tggagagtttgatcctggctcaggatgaacgctggcggcgtgcctaatacatgcaagtcgagcaacggacgagaagcttgcttctctgatgttagcggcggacgggtgagtaacacgtggataacctacctataagactgggataacttcgggaaaccggagctaataccggataatattttgaaccgcatggttcaaaagtgaaagacggtcttgctgtcacttatagatggatcggcgctgcattagctagttggtaaggtaacggcttaccaaggcaacgatgcatagccgacctgagagggtgatcggccacactggaactgagacacggtccagactcctacgggaggcagcagtagggaatcttccgcaatgggcgaaagcgggacggagcaacgccgcgtgagtgatgaggtcttcggatcgtaaaactctgttattagggaagaacatatgtgtaagtaactgtgcacatcttgacggtaccgaatcagaaagccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttatccggaattattgggcgtaaagcgcaagtaggcggttttttaagtctgatgtgaaagcccacggctcaaccgtggagggtcattggaaactggaaaacttgagtgcagaagaggaaagtggaattccatgtgtagcggtgaaatgcgcagagatatggaggaacaccagtggcgaaggcgactttcaggtctgtaactgacgctgatgtgcgaaagcgtggggatcaaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaagtgttagggggtttccgccccttagtgctgcagctaacgcattaagcactccgcctggggagtacgaccgcaaggttgaaactcaaaggaattgacggggacccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaaatcttgacatcctttgacaactctagagatagagccttccccttcgggggacaaagtgacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttaagcttagttgccatcattaagttgggcactctaagttgactgccggtgacaaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgatttgggctacacacgtgctacaatggacaatacaaagggcagcgaaaccgcgaggtcaagcaaatcccataaagttgttctcagttcggattgtagtctgcaactcgactacatgaagctggaatcgctagtaatcgtagatcagcatgctacggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagccggtggagtaaccttttaggagctagccgtcgaaggtgggacaaatgattggggtgaagtcgtaacaaggtagccgtatcggaaggtgcggctggatcacctcctttct ## .. ..- attr(*, "name")= chr "24.6jsd19.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd19.Tut " ## $ 24.6jsd20.Tut:Class 'SeqFastadna' atomic [1:1] tggctcagattgaacgctggcggcaggcctaacacatgcaagtcgagcggcagcacgggtacttgtacctggtggcgagcggcggacgggtgagtaatgcctaggaatctgcctggtagtttgggataacgctcggaaacggacgctaataccgcatacgtcctacgggagaaagcaggggaccttcgggccttgcgctatcagatgagcctaggtcggattagctagttggtgaggtaatggctcaccaaggcgacgatccgtaactggtctgagaggatgatcagtaacactggaactgagacacggtccagactcctacgggaggcagcagtggggaatattggacaatgggcgaaagcctgatccagccatgccgcgtgtgaaaagaaggtcttcggattgtaaagcactttaagttgggaggaagggcagttacctaatacgtgtctgttttgacgttaccgacagaataagcaccggctaactctgtgccagcagccgcggtaatacagagggtgcaagcgttaatcggaattactgggcgtaaagcgcgcgtaggtggtttgttaagttgaatgtgaaatccccgggctcaacctgggaactgcatccaaaactggcaagctagagtatggtagagggtggtggaatttcctgtgtagcggtgaaatgcgtaaatataggaaggaacaccagtggcgaaggcgaccacctggactgatactgacactgaggtgcgaaagcgtggggagcaaacaggattagataccctggtagttcacgccgtaaacgatgtcaactagccgttgggagccttgagctcttagtggcgcagctaacgcattaagttgaccgcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggttgaattcgaagcaacgcgaagaaccttaccaggccttgacatccaatgaactttccagagatggattggtgccttcgggaacattgagacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgtaacgagcccaacccttgtccttagttaccagcacgttaaggtgggcactctaaggagactgccggtgacaaaccggaggaaggtggggatgacgtcaagtcatcatggcccttacggcctgggctacacacgtgctacaatggtcggtacagagggttgccaagcgcgaggtggagctaatctcacaaaaccgatcgtagtccggatcgcagtctgcaactcgactgcgtgaagtcggaatcgctagtaatcgcgaatcagaatgtcgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtgggttgcaccagaagtagctagtctaaccttcggggggacggttaccacggtgtgattcatg ## .. ..- attr(*, "name")= chr "24.6jsd20.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd20.Tut " ## $ 24.6jsd21.Tut:Class 'SeqFastadna' atomic [1:1] gaagagtttgatcctggcttagaactaacgctggcagtgcgtcttaagcatgcaagtcaaacgggatgtagcaatacattcagtggcgaacgggtgagtaacgcgtggatgatctacctatgagatggggataactattaaaaatagtagctaataccgaataaggtcagttaatttgttaattgatgaaaggaagcctttaaagcttcgcttgtagatgagtctgcgtcttattagctagttggtagggtaaatgcctaccaaggcaatgataagtaaccggccttagagggtgaacggtcacactggaactgagatacggtccagactcctacgggaggcagcagctaagaatcttccgcaatgggcgaaagcctgacggagcgacattgcgtgaatgaagaaggtcgaaagattgtaaaattcttttataaatgtaggaataagctttgtaggaaatgacaaagtgatgacgttaatttatgaataagccccggctaattacgtgccagcagccgcggtaatacgtaaggggcgagcgttgttcgggattattgggcgtaaagggtgagtaggcggatatataagtctatgcataaaataccacagctcaactgtggacctatgttggaaactatatgtctagagtctgatagaggaagttagaatttctggtgtaagggtggaatctgttgatatcagaaagaataccggaggcgaaggcgaacttctgggtcaagactgacgctgagtcacgaaagcgtagggagcaaacaggattagataccctggtagtctacgctgtaaacgatgcacacttggtgttaactaaaagttagtaccgaagctaacgtgttaagtgtgccgcctggggagtatgctcgcaagagtgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgatacgcgaggaaccttaccagggcttgacatatataggatatagttagagataattattccccgtttggggtctatatacaggtgctgcatggttgtcgtcagctcgtgctgtgaggtgttgggttaagtcggcaacgagcgcaacccttgttatctgttaccagcatgtaatggtggggactcagataagactgccggtgataagtcggaggaaggtgaggatgacgtcaaatcatcatggcccttatgtcctgggctacacacgtgctacaatggcctgtacaaagcgaagcgaaacagtgatgtgaagcaaaacgcataaagcaggtctcagtccggattgaagtctgaaactcgacttcatgaagttggaatcgctagtatccgtatatcagaatgatacggtgaatacgttctcgggccttgtacacaccgcccgtcacaccacccgagttgaggatacccgaagctattattctaacccgtaagggaggaaggtatttaaggtatgtttagtgaggggggtgaagtcgtaacaaggtagccgtactggaaagtgcggctggatcacctcctt ## .. ..- attr(*, "name")= chr "24.6jsd21.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd21.Tut" ## $ 24.6jsd22.Tut:Class 'SeqFastadna' atomic [1:1] agtttgatcatggctcagaatgaacgaaagcggcatggattaggcatgcaagtcgtgcgcgaaacgtagcaatacgtggagagcggcgaaagggagaggaatacgtgggaacctacctcggggcctggaatagcggcgggaaactgccggtaatgccagataacgtctccggaccaaaggtgtgattccgcctggagatgggcccacgtcctatcagctagttggtgtggtaacggcgcaccaaggctaagacgggtatggggtgtgagagcatgcccccactcactgggactgagacactgcccagacacctacgggtggctgcagtcgagaatcttcggcgatgagttcaagcttgaccgagcgatgccgcgtgcgggatgaaggccctcgggttgtaaaccgctgtcgtaggggaataaaggtcggtgggttctcccaccgatttgaatgatcctaggaggaaggacgggctaagttcgtgccagcagccgcggtaagacgaaccgtccaaacgttattcggaatcagagggcttacagagttcgtaggcggtctggaaagttgggtgtgaaatccctcggctcaaccgaggaactgcgcttgaaactaccagactcgagggggatagaggaaagcggaactgatggtggagcggtgaaatgcgttgatatcatcaggaacaccggtggcgaaggcggctttctgggtcttacctgacgctgaggaacgaaagccaggggagcgaacgggattagataccccggtagtcctggccgtaaacgatgagcactaggtcgtgggcctccacaggccctcggccgtagcgaaagtgttaagcgctccgcctggggagtatggtcgcaaggctgaaactcaaaggaattgacgggggcccgcacaagccacggagcatgtggattaattcgatgcaacgcgaagaaccttacctgggtttgacatgcaccagatatccctagagatagggcttcccttgtggttggtgtgcaggtggtgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaaccctcgttccatgttgccagcacgtaatggtggggactcatgggagactgccggggtcaactcggaggaaggtggggatgacgtcaagtcatcatgccccttatgtccagggcttcacacatgctacaatggccggtacagagggttgcgagaccgtgaggtggagcgaatcccttaaagccggtctcagttcggatcggggtctgcaactcgaccccgtgaagtcggagtcgctagtaatcgcagatcagcaacgctgcggtgaatacgttcccgggccttgtacacaccgcccgtcacgtcacgaaagtcggtaacacccgaagcccatggcccaacccctttttggggagggagtggtcgaaggtgggactggcgattgggacgaagtcgtaacaaggtaac ## .. ..- attr(*, "name")= chr "24.6jsd22.Tut" ## .. ..- attr(*, "Annot")= chr ">24.6jsd22.Tut "
SeqinR - Información
class(my_fasta)
## [1] "list"
length(my_fasta[[1]][1])
## [1] 1
nchar(my_fasta[[1]][1])
## [1] 1551
SeqinR - Primer Segmento
my_fasta[[1]][1]
## [1] "ttggagagtttgatcctggctcaggatgaacgctggcggcgtgcctaatacatgcaagtcgagcgaatggattaagagcttgctcttatgaagttagcggcggacgggtgagtaacacgtgggtaacctgcccataagactgggataactccgggaaaccggggctaataccggataacattttgaaccgcatggttcgaaattgaaaggcggcttcggtcgtcacttatggatggacccgcgtcgcattagctagttggtgaggtaacggctcaccaaggcaacgatgcgtagccgacctgagagggtgatcggccacactgggactgagacacggcccagactcctacgggaggcagcagtagggaatcttccgcaatggacgaaagtctgacggagcaacgccgcgtgagtgatgaaggctttcgggtcgtaaaactctgttgttagggaagaacaagtgctagttgaataagctggcaccttgacggtacctaaccagaaagccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcgttatccggaattattgggcgtaaagaacgcgcaggtggtttcttaagtctgatgtgaaagcccacggctcaaccgtggagggtcattggaaactgggagacttgagtgcagaagaggaaagtggaattccatgtgtagcggtgaaatgcgtagagatatggaggaacaccagtggcccaggcgactttctggtctgtaactgacactgaggcgcgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgagtgctaagtgttagagggtttccgccctttagtgctgaagttaaagcattaagcactccgcgtgtggagtacggccgcaaggctgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgaagcaacgcgaagaaccttaccaggtcttgacatcctctgacaaccctagagatagggcttctccttcgggagcagagtgacaggtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgatcttagttgccatcattwagttgggcactctaaggtgactgccggtgacaaaccggaggaaggtggggatgacgtcaaatcatcatgccccttatgacctgggctacacacgtgctacaatggacggtacaaagagctgcaagaccgcgaggtggagctaatctcataaaaccgttctcagttcggattgtaggctgcaactcgcctacatgaagctggaatcgctagtaatcgcggatcagcatgccgcggtgaatacgttcccgggccttgtacacaccgcccgtcacaccacgagagtttgtaacacccgaagtcggtggggtaacctttttggagccagccgcctaaggtgggacagatgattggggtgaagtcgtaacaaggtagccgtatcggaaggtgcggctggatcacctcctttct"
SeqinR - Tabla
table(my_fasta1[[1]])
## ## a c g t w ## 393 351 476 330 1
SeqinR - Contenido GC
GC(my_fasta1[[1]])
## [1] 0.5335484
SeqinR - Palabras
count(my_fasta1[[1]], 1)
## ## a c g t ## 393 351 476 330
count(my_fasta1[[1]], 2)
## ## aa ac ag at ca cc cg ct ga gc gg gt ta tc tg tt ## 114 96 116 67 85 82 102 82 120 107 142 107 73 66 116 73
count(my_fasta1[[1]], 3)
## ## aaa aac aag aat aca acc acg act aga agc agg agt ata atc atg att caa cac ## 23 33 39 19 25 26 27 18 25 31 31 29 12 15 25 15 23 24 ## cag cat cca ccc ccg cct cga cgc cgg cgt cta ctc ctg ctt gaa gac gag gat ## 20 18 16 16 28 22 15 26 35 26 17 17 26 21 37 24 36 23 ## gca gcc gcg gct gga ggc ggg ggt gta gtc gtg gtt taa tac tag tat tca tcc ## 28 26 27 26 41 30 34 37 25 19 41 22 31 15 20 7 16 14 ## tcg tct tga tgc tgg tgt tta ttc ttg ttt ## 20 16 39 20 42 15 19 15 24 14
SeqinR - Más Comandos
Bioconductor
- Open source & open development project for the analysis of biomedical and genomic data
- Se distribuye como paquetes de R
- Código
- Datos
- Otros (como cursos)
- Programación orientada a objetos
Bioconductor
Bioconductor
Bioconductor - Instalación
- source("https://bioconductor.org/biocLite.R")
- biocLite()
Bioconductor - Tutoriales
library(Biobase)
## Loading required package: BiocGenerics
## Loading required package: parallel
## ## Attaching package: 'BiocGenerics'
## The following objects are masked from 'package:parallel': ## ## clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, ## clusterExport, clusterMap, parApply, parCapply, parLapply, ## parLapplyLB, parRapply, parSapply, parSapplyLB
## The following object is masked from 'package:ade4': ## ## score
## The following object is masked from 'package:stats': ## ## xtabs
## The following objects are masked from 'package:base': ## ## anyDuplicated, append, as.data.frame, as.vector, cbind, ## colnames, do.call, duplicated, eval, evalq, Filter, Find, get, ## intersect, is.unsorted, lapply, Map, mapply, match, mget, ## order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, ## rbind, Reduce, rep.int, rownames, sapply, setdiff, sort, ## table, tapply, union, unique, unlist, unsplit
## Welcome to Bioconductor
##
## Vignettes contain introductory material; view with
## 'browseVignettes()'. To cite Bioconductor, see
## 'citation("Biobase")', and for packages 'citation("pkgname")'.
Bioconductor - Tutoriales
- openVignette()