Mixed Effect Rancangan Percobaan
Restika (H051241055)
2026-10-08
================================================================
ANALISIS RANCANGAN ACAK KELOMPOK (RAK)
DENGAN MIXED EFFECT MODEL
Data : 20 Genotype x 6 Environment x 3 Replication
Respon : Yield
Fixed Effect :
1. Genotype
2. Environment
3. Genotype x Environment
Random Effect :
Replication yang tersarang dalam Environment
Model:
Y_ijk = mu + G_i + E_j + (GE)_ij + B_k(j) + e_ijk
================================================================
================================================================
2. LOAD PACKAGE
================================================================
library(readxl)
library(lme4)## Loading required package: Matrixlibrary(lmerTest)##
## Attaching package: 'lmerTest'## The following object is masked from 'package:lme4':
##
## lmer## The following object is masked from 'package:stats':
##
## steplibrary(emmeans)## Welcome to emmeans.
## Caution: You lose important information if you filter this package's results.
## See '? untidy'library(multcomp)## Loading required package: mvtnorm## Loading required package: survival## Loading required package: TH.data## Loading required package: MASS##
## Attaching package: 'TH.data'## The following object is masked from 'package:MASS':
##
## geyserlibrary(performance)================================================================
3. IMPORT DATA
================================================================
data <- read_excel(
"D:/STATISTIKA/SEM 5/Pemodelan Statistika/Pekan 1-8/Tugas Artikel Mixed Effect/Dataset.xlsx",
sheet = "Y + BM"
)================================================================
4. MELIHAT STRUKTUR DATA
================================================================
head(data)## # A tibble: 6 × 5
## Genotype Environment Replications Yield Biomass
## <chr> <chr> <dbl> <dbl> <dbl>
## 1 R1 - 1 E1 1 3.47 635
## 2 R1 - 1 E1 2 5 1093
## 3 R1 - 1 E1 3 4.23 1061
## 4 R1 - 20 E1 1 4.8 956.
## 5 R1 - 20 E1 2 3.67 876.
## 6 R1 - 20 E1 3 4.23 789str(data)## tibble [360 × 5] (S3: tbl_df/tbl/data.frame)
## $ Genotype : chr [1:360] "R1 - 1" "R1 - 1" "R1 - 1" "R1 - 20" ...
## $ Environment : chr [1:360] "E1" "E1" "E1" "E1" ...
## $ Replications: num [1:360] 1 2 3 1 2 3 1 2 3 1 ...
## $ Yield : num [1:360] 3.47 5 4.23 4.8 3.67 ...
## $ Biomass : num [1:360] 635 1093 1061 956 876 ...dim(data)## [1] 360 5summary(data)## Genotype Environment Replications Yield
## Length :360 Length :360 Min. :1 Min. : 1.133
## N.unique : 20 N.unique : 6 1st Qu.:1 1st Qu.: 4.000
## N.blank : 0 N.blank : 0 Median :2 Median : 5.367
## Min.nchar: 3 Min.nchar: 2 Mean :2 Mean : 5.781
## Max.nchar: 7 Max.nchar: 2 3rd Qu.:3 3rd Qu.: 7.117
## Max. :3 Max. :18.467
## Biomass
## Min. : 66.0
## 1st Qu.: 360.0
## Median : 641.8
## Mean : 658.8
## 3rd Qu.: 908.8
## Max. :1637.5================================================================
5. MENGUBAH VARIABEL MENJADI FACTOR
================================================================
data$Genotype <- factor(data$Genotype)
data$Environment <- factor(data$Environment)
data$Replications <- factor(data$Replications)
# Melihat jumlah level
nlevels(data$Genotype)## [1] 20nlevels(data$Environment)## [1] 6nlevels(data$Replications)## [1] 3================================================================
6. PEMERIKSAAN STRUKTUR RANCANGAN
================================================================
# Jumlah replication pada setiap environment
table(
data$Environment,
data$Replications
)##
## 1 2 3
## E1 20 20 20
## E2 20 20 20
## E3 20 20 20
## E4 20 20 20
## E5 20 20 20
## E6 20 20 20# Jumlah observasi setiap kombinasi Genotype x Environment
table(
data$Genotype,
data$Environment
)##
## E1 E2 E3 E4 E5 E6
## R1 - 1 3 3 3 3 3 3
## R1 - 20 3 3 3 3 3 3
## R2 - 10 3 3 3 3 3 3
## R2 - 15 3 3 3 3 3 3
## R3 - 1 3 3 3 3 3 3
## R3 - 10 3 3 3 3 3 3
## R3 - 14 3 3 3 3 3 3
## R3 - 17 3 3 3 3 3 3
## R3 - 19 3 3 3 3 3 3
## R3 - 4 3 3 3 3 3 3
## R3 - 7 3 3 3 3 3 3
## R3 - 9 3 3 3 3 3 3
## R4 - 1 3 3 3 3 3 3
## R4 - 14 3 3 3 3 3 3
## R4 - 6 3 3 3 3 3 3
## R4 - 8 3 3 3 3 3 3
## SC1 3 3 3 3 3 3
## SC2 3 3 3 3 3 3
## SC3 3 3 3 3 3 3
## SC4 3 3 3 3 3 3# Jumlah observasi
nrow(data)## [1] 360================================================================
7. CEK MISSING VALUE
================================================================
colSums(is.na(data))## Genotype Environment Replications Yield Biomass
## 0 0 0 0 0================================================================
8. STATISTIK DESKRIPTIF YIELD
================================================================
summary(data$Yield)## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 1.133 4.000 5.367 5.781 7.117 18.467# Rata-rata Yield keseluruhan
mean(data$Yield)## [1] 5.780851# Rata-rata Yield berdasarkan Genotype
aggregate(
Yield ~ Genotype,
data = data,
FUN = mean
)## Genotype Yield
## 1 R1 - 1 5.783352
## 2 R1 - 20 5.338911
## 3 R2 - 10 8.005575
## 4 R2 - 15 5.461127
## 5 R3 - 1 5.694461
## 6 R3 - 10 8.627804
## 7 R3 - 14 3.961125
## 8 R3 - 17 5.609276
## 9 R3 - 19 6.238911
## 10 R3 - 4 4.896313
## 11 R3 - 7 6.577799
## 12 R3 - 9 5.729648
## 13 R4 - 1 6.994461
## 14 R4 - 14 5.587982
## 15 R4 - 6 5.629649
## 16 R4 - 8 4.941678
## 17 SC1 5.800014
## 18 SC2 5.287054
## 19 SC3 4.946312
## 20 SC4 4.505570# Rata-rata Yield berdasarkan Environment
aggregate(
Yield ~ Environment,
data = data,
FUN = mean
)## Environment Yield
## 1 E1 5.740000
## 2 E2 4.940858
## 3 E3 6.221142
## 4 E4 7.573333
## 5 E5 4.902247
## 6 E6 5.307527# Rata-rata Yield berdasarkan Genotype dan Environment
aggregate(
Yield ~ Genotype + Environment,
data = data,
FUN = mean
)## Genotype Environment Yield
## 1 R1 - 1 E1 4.233333
## 2 R1 - 20 E1 4.233333
## 3 R2 - 10 E1 8.900000
## 4 R2 - 15 E1 7.266667
## 5 R3 - 1 E1 7.066667
## 6 R3 - 10 E1 6.866667
## 7 R3 - 14 E1 3.800000
## 8 R3 - 17 E1 6.022222
## 9 R3 - 19 E1 5.433333
## 10 R3 - 4 E1 5.711111
## 11 R3 - 7 E1 3.666667
## 12 R3 - 9 E1 4.866667
## 13 R4 - 1 E1 7.600000
## 14 R4 - 14 E1 3.266667
## 15 R4 - 6 E1 7.300000
## 16 R4 - 8 E1 8.800000
## 17 SC1 E1 6.800000
## 18 SC2 E1 2.733333
## 19 SC3 E1 4.600000
## 20 SC4 E1 5.633333
## 21 R1 - 1 E2 4.366689
## 22 R1 - 20 E2 5.266693
## 23 R2 - 10 E2 4.333355
## 24 R2 - 15 E2 2.433346
## 25 R3 - 1 E2 3.466684
## 26 R3 - 10 E2 6.533366
## 27 R3 - 14 E2 5.000025
## 28 R3 - 17 E2 4.233354
## 29 R3 - 19 E2 2.766681
## 30 R3 - 4 E2 6.400032
## 31 R3 - 7 E2 7.066702
## 32 R3 - 9 E2 4.766691
## 33 R4 - 1 E2 7.266703
## 34 R4 - 14 E2 6.050030
## 35 R4 - 6 E2 6.400032
## 36 R4 - 8 E2 5.033359
## 37 SC1 E2 4.133354
## 38 SC2 E2 5.200026
## 39 SC3 E2 5.133359
## 40 SC4 E2 2.966681
## 41 R1 - 1 E3 6.333365
## 42 R1 - 20 E3 8.200041
## 43 R2 - 10 E3 6.066697
## 44 R2 - 15 E3 6.833368
## 45 R3 - 1 E3 8.666710
## 46 R3 - 10 E3 7.766706
## 47 R3 - 14 E3 4.166688
## 48 R3 - 17 E3 7.066702
## 49 R3 - 19 E3 5.133359
## 50 R3 - 4 E3 4.200021
## 51 R3 - 7 E3 10.600053
## 52 R3 - 9 E3 6.444477
## 53 R4 - 1 E3 6.566700
## 54 R4 - 14 E3 8.911156
## 55 R4 - 6 E3 5.066692
## 56 R4 - 8 E3 2.533346
## 57 SC1 E3 3.700019
## 58 SC2 E3 4.466689
## 59 SC3 E3 5.866696
## 60 SC4 E3 5.833362
## 61 R1 - 1 E4 8.033333
## 62 R1 - 20 E4 1.566667
## 63 R2 - 10 E4 15.333333
## 64 R2 - 15 E4 6.766667
## 65 R3 - 1 E4 7.000000
## 66 R3 - 10 E4 13.400000
## 67 R3 - 14 E4 2.733333
## 68 R3 - 17 E4 8.066667
## 69 R3 - 19 E4 5.400000
## 70 R3 - 4 E4 4.133333
## 71 R3 - 7 E4 10.466667
## 72 R3 - 9 E4 7.416667
## 73 R4 - 1 E4 14.000000
## 74 R4 - 14 E4 7.433333
## 75 R4 - 6 E4 3.066667
## 76 R4 - 8 E4 7.716667
## 77 SC1 E4 11.066667
## 78 SC2 E4 8.366667
## 79 SC3 E4 5.700000
## 80 SC4 E4 3.800000
## 81 R1 - 1 E5 9.333380
## 82 R1 - 20 E5 6.933368
## 83 R2 - 10 E5 5.000025
## 84 R2 - 15 E5 7.933373
## 85 R3 - 1 E5 2.633347
## 86 R3 - 10 E5 5.766695
## 87 R3 - 14 E5 4.866691
## 88 R3 - 17 E5 3.366684
## 89 R3 - 19 E5 3.633351
## 90 R3 - 4 E5 6.833367
## 91 R3 - 7 E5 5.466694
## 92 R3 - 9 E5 4.966691
## 93 R4 - 1 E5 2.433346
## 94 R4 - 14 E5 2.933348
## 95 R4 - 6 E5 2.311123
## 96 R4 - 8 E5 2.100010
## 97 SC1 E5 4.800024
## 98 SC2 E5 5.288915
## 99 SC3 E5 5.644473
## 100 SC4 E5 5.800029
## 101 R1 - 1 E6 2.400012
## 102 R1 - 20 E6 5.833362
## 103 R2 - 10 E6 8.400042
## 104 R2 - 15 E6 1.533341
## 105 R3 - 1 E6 5.333360
## 106 R3 - 10 E6 11.433390
## 107 R3 - 14 E6 3.200016
## 108 R3 - 17 E6 4.900024
## 109 R3 - 19 E6 15.066742
## 110 R3 - 4 E6 2.100010
## 111 R3 - 7 E6 2.200011
## 112 R3 - 9 E6 5.916696
## 113 R4 - 1 E6 4.100021
## 114 R4 - 14 E6 4.933358
## 115 R4 - 6 E6 9.633382
## 116 R4 - 8 E6 3.466684
## 117 SC1 E6 4.300021
## 118 SC2 E6 5.666695
## 119 SC3 E6 2.733347
## 120 SC4 E6 3.000015================================================================
9. VISUALISASI AWAL
================================================================
# Boxplot Yield berdasarkan Genotype
boxplot(
Yield ~ Genotype,
data = data,
las = 2,
main = "Distribusi Yield berdasarkan Genotype",
xlab = "Genotype",
ylab = "Yield"
)
# Boxplot Yield berdasarkan Environment
boxplot(
Yield ~ Environment,
data = data,
main = "Distribusi Yield berdasarkan Environment",
xlab = "Environment",
ylab = "Yield"
)
# ================================================================ # 10.
MEMBANGUN MODEL MIXED EFFECT #
================================================================ # #
Model: # # Y_ijk = # mu + G_i + E_j + (GE)_ij + B_k(j) + e_ijk # # G_i =
Fixed effect Genotype # E_j = Fixed effect Environment # GE_ij = Fixed
effect interaksi # B_k(j) = Random effect Replication nested dalam
Environment # e_ijk = Random error # #
================================================================
model_yield <- lmer(
Yield ~ Genotype * Environment +
(1 | Environment:Replications),
data = data,
REML = TRUE
)================================================================
11. RINGKASAN MODEL
================================================================
summary(model_yield)## Linear mixed model fit by REML. t-tests use Satterthwaite's method [
## lmerModLmerTest]
## Formula: Yield ~ Genotype * Environment + (1 | Environment:Replications)
## Data: data
##
## REML criterion at convergence: 770.3
##
## Scaled residuals:
## Min 1Q Median 3Q Max
## -4.4372 -0.1681 -0.0115 0.2045 4.5136
##
## Random effects:
## Groups Name Variance Std.Dev.
## Environment:Replications (Intercept) 0.02313 0.1521
## Residual 0.81877 0.9049
## Number of obs: 360, groups: Environment:Replications, 18
##
## Fixed effects:
## Estimate Std. Error df t value Pr(>|t|)
## (Intercept) 4.233e+00 5.297e-01 2.366e+02 7.991 5.86e-14
## GenotypeR1 - 20 4.811e-14 7.388e-01 2.280e+02 0.000 1.000000
## GenotypeR2 - 10 4.667e+00 7.388e-01 2.280e+02 6.316 1.39e-09
## GenotypeR2 - 15 3.033e+00 7.388e-01 2.280e+02 4.106 5.62e-05
## GenotypeR3 - 1 2.833e+00 7.388e-01 2.280e+02 3.835 0.000163
## GenotypeR3 - 10 2.633e+00 7.388e-01 2.280e+02 3.564 0.000444
## GenotypeR3 - 14 -4.333e-01 7.388e-01 2.280e+02 -0.587 0.558103
## GenotypeR3 - 17 1.789e+00 7.388e-01 2.280e+02 2.421 0.016247
## GenotypeR3 - 19 1.200e+00 7.388e-01 2.280e+02 1.624 0.105710
## GenotypeR3 - 4 1.478e+00 7.388e-01 2.280e+02 2.000 0.046665
## GenotypeR3 - 7 -5.667e-01 7.388e-01 2.280e+02 -0.767 0.443878
## GenotypeR3 - 9 6.333e-01 7.388e-01 2.280e+02 0.857 0.392219
## GenotypeR4 - 1 3.367e+00 7.388e-01 2.280e+02 4.557 8.47e-06
## GenotypeR4 - 14 -9.667e-01 7.388e-01 2.280e+02 -1.308 0.192054
## GenotypeR4 - 6 3.067e+00 7.388e-01 2.280e+02 4.151 4.68e-05
## GenotypeR4 - 8 4.567e+00 7.388e-01 2.280e+02 6.181 2.91e-09
## GenotypeSC1 2.567e+00 7.388e-01 2.280e+02 3.474 0.000613
## GenotypeSC2 -1.500e+00 7.388e-01 2.280e+02 -2.030 0.043489
## GenotypeSC3 3.667e-01 7.388e-01 2.280e+02 0.496 0.620168
## GenotypeSC4 1.400e+00 7.388e-01 2.280e+02 1.895 0.059367
## EnvironmentE2 1.334e-01 7.492e-01 2.366e+02 0.178 0.858873
## EnvironmentE3 2.100e+00 7.492e-01 2.366e+02 2.803 0.005481
## EnvironmentE4 3.800e+00 7.492e-01 2.366e+02 5.072 7.94e-07
## EnvironmentE5 5.100e+00 7.492e-01 2.366e+02 6.808 8.10e-11
## EnvironmentE6 -1.833e+00 7.492e-01 2.366e+02 -2.447 0.015129
## GenotypeR1 - 20:EnvironmentE2 9.000e-01 1.045e+00 2.280e+02 0.861 0.389935
## GenotypeR2 - 10:EnvironmentE2 -4.700e+00 1.045e+00 2.280e+02 -4.498 1.09e-05
## GenotypeR2 - 15:EnvironmentE2 -4.967e+00 1.045e+00 2.280e+02 -4.754 3.54e-06
## GenotypeR3 - 1:EnvironmentE2 -3.733e+00 1.045e+00 2.280e+02 -3.573 0.000430
## GenotypeR3 - 10:EnvironmentE2 -4.667e-01 1.045e+00 2.280e+02 -0.447 0.655567
## GenotypeR3 - 14:EnvironmentE2 1.067e+00 1.045e+00 2.280e+02 1.021 0.308388
## GenotypeR3 - 17:EnvironmentE2 -1.922e+00 1.045e+00 2.280e+02 -1.840 0.067109
## GenotypeR3 - 19:EnvironmentE2 -2.800e+00 1.045e+00 2.280e+02 -2.680 0.007903
## GenotypeR3 - 4:EnvironmentE2 5.556e-01 1.045e+00 2.280e+02 0.532 0.595436
## GenotypeR3 - 7:EnvironmentE2 3.267e+00 1.045e+00 2.280e+02 3.126 0.001999
## GenotypeR3 - 9:EnvironmentE2 -2.333e-01 1.045e+00 2.280e+02 -0.223 0.823488
## GenotypeR4 - 1:EnvironmentE2 -4.667e-01 1.045e+00 2.280e+02 -0.447 0.655570
## GenotypeR4 - 14:EnvironmentE2 2.650e+00 1.045e+00 2.280e+02 2.536 0.011873
## GenotypeR4 - 6:EnvironmentE2 -1.033e+00 1.045e+00 2.280e+02 -0.989 0.323723
## GenotypeR4 - 8:EnvironmentE2 -3.900e+00 1.045e+00 2.280e+02 -3.733 0.000239
## GenotypeSC1:EnvironmentE2 -2.800e+00 1.045e+00 2.280e+02 -2.680 0.007903
## GenotypeSC2:EnvironmentE2 2.333e+00 1.045e+00 2.280e+02 2.233 0.026507
## GenotypeSC3:EnvironmentE2 4.000e-01 1.045e+00 2.280e+02 0.383 0.702198
## GenotypeSC4:EnvironmentE2 -2.800e+00 1.045e+00 2.280e+02 -2.680 0.007903
## GenotypeR1 - 20:EnvironmentE3 1.867e+00 1.045e+00 2.280e+02 1.787 0.075337
## GenotypeR2 - 10:EnvironmentE3 -4.933e+00 1.045e+00 2.280e+02 -4.722 4.09e-06
## GenotypeR2 - 15:EnvironmentE3 -2.533e+00 1.045e+00 2.280e+02 -2.425 0.016104
## GenotypeR3 - 1:EnvironmentE3 -5.000e-01 1.045e+00 2.280e+02 -0.479 0.632732
## GenotypeR3 - 10:EnvironmentE3 -1.200e+00 1.045e+00 2.280e+02 -1.148 0.251969
## GenotypeR3 - 14:EnvironmentE3 -1.733e+00 1.045e+00 2.280e+02 -1.659 0.098500
## GenotypeR3 - 17:EnvironmentE3 -1.056e+00 1.045e+00 2.280e+02 -1.010 0.313446
## GenotypeR3 - 19:EnvironmentE3 -2.400e+00 1.045e+00 2.280e+02 -2.297 0.022526
## GenotypeR3 - 4:EnvironmentE3 -3.611e+00 1.045e+00 2.280e+02 -3.456 0.000653
## GenotypeR3 - 7:EnvironmentE3 4.833e+00 1.045e+00 2.280e+02 4.626 6.25e-06
## GenotypeR3 - 9:EnvironmentE3 -5.222e-01 1.045e+00 2.280e+02 -0.500 0.617691
## GenotypeR4 - 1:EnvironmentE3 -3.133e+00 1.045e+00 2.280e+02 -2.999 0.003011
## GenotypeR4 - 14:EnvironmentE3 3.544e+00 1.045e+00 2.280e+02 3.392 0.000817
## GenotypeR4 - 6:EnvironmentE3 -4.333e+00 1.045e+00 2.280e+02 -4.147 4.75e-05
## GenotypeR4 - 8:EnvironmentE3 -8.367e+00 1.045e+00 2.280e+02 -8.008 5.96e-14
## GenotypeSC1:EnvironmentE3 -5.200e+00 1.045e+00 2.280e+02 -4.977 1.27e-06
## GenotypeSC2:EnvironmentE3 -3.667e-01 1.045e+00 2.280e+02 -0.351 0.725958
## GenotypeSC3:EnvironmentE3 -8.333e-01 1.045e+00 2.280e+02 -0.798 0.425949
## GenotypeSC4:EnvironmentE3 -1.900e+00 1.045e+00 2.280e+02 -1.818 0.070306
## GenotypeR1 - 20:EnvironmentE4 -6.467e+00 1.045e+00 2.280e+02 -6.189 2.78e-09
## GenotypeR2 - 10:EnvironmentE4 2.633e+00 1.045e+00 2.280e+02 2.520 0.012409
## GenotypeR2 - 15:EnvironmentE4 -4.300e+00 1.045e+00 2.280e+02 -4.115 5.40e-05
## GenotypeR3 - 1:EnvironmentE4 -3.867e+00 1.045e+00 2.280e+02 -3.701 0.000270
## GenotypeR3 - 10:EnvironmentE4 2.733e+00 1.045e+00 2.280e+02 2.616 0.009490
## GenotypeR3 - 14:EnvironmentE4 -4.867e+00 1.045e+00 2.280e+02 -4.658 5.43e-06
## GenotypeR3 - 17:EnvironmentE4 -1.756e+00 1.045e+00 2.280e+02 -1.680 0.094286
## GenotypeR3 - 19:EnvironmentE4 -3.833e+00 1.045e+00 2.280e+02 -3.669 0.000303
## GenotypeR3 - 4:EnvironmentE4 -5.378e+00 1.045e+00 2.280e+02 -5.147 5.71e-07
## GenotypeR3 - 7:EnvironmentE4 3.000e+00 1.045e+00 2.280e+02 2.871 0.004474
## GenotypeR3 - 9:EnvironmentE4 -1.250e+00 1.045e+00 2.280e+02 -1.196 0.232801
## GenotypeR4 - 1:EnvironmentE4 2.600e+00 1.045e+00 2.280e+02 2.488 0.013547
## GenotypeR4 - 14:EnvironmentE4 3.667e-01 1.045e+00 2.280e+02 0.351 0.725965
## GenotypeR4 - 6:EnvironmentE4 -8.033e+00 1.045e+00 2.280e+02 -7.689 4.42e-13
## GenotypeR4 - 8:EnvironmentE4 -4.883e+00 1.045e+00 2.280e+02 -4.674 5.06e-06
## GenotypeSC1:EnvironmentE4 4.667e-01 1.045e+00 2.280e+02 0.447 0.655560
## GenotypeSC2:EnvironmentE4 1.833e+00 1.045e+00 2.280e+02 1.755 0.080662
## GenotypeSC3:EnvironmentE4 -2.700e+00 1.045e+00 2.280e+02 -2.584 0.010386
## GenotypeSC4:EnvironmentE4 -5.633e+00 1.045e+00 2.280e+02 -5.392 1.74e-07
## GenotypeR1 - 20:EnvironmentE5 -2.400e+00 1.045e+00 2.280e+02 -2.297 0.022526
## GenotypeR2 - 10:EnvironmentE5 -9.000e+00 1.045e+00 2.280e+02 -8.614 1.18e-15
## GenotypeR2 - 15:EnvironmentE5 -4.433e+00 1.045e+00 2.280e+02 -4.243 3.21e-05
## GenotypeR3 - 1:EnvironmentE5 -9.533e+00 1.045e+00 2.280e+02 -9.124 < 2e-16
## GenotypeR3 - 10:EnvironmentE5 -6.200e+00 1.045e+00 2.280e+02 -5.934 1.09e-08
## GenotypeR3 - 14:EnvironmentE5 -4.033e+00 1.045e+00 2.280e+02 -3.860 0.000148
## GenotypeR3 - 17:EnvironmentE5 -7.756e+00 1.045e+00 2.280e+02 -7.423 2.26e-12
## GenotypeR3 - 19:EnvironmentE5 -6.900e+00 1.045e+00 2.280e+02 -6.604 2.78e-10
## GenotypeR3 - 4:EnvironmentE5 -3.978e+00 1.045e+00 2.280e+02 -3.807 0.000181
## GenotypeR3 - 7:EnvironmentE5 -3.300e+00 1.045e+00 2.280e+02 -3.158 0.001801
## GenotypeR3 - 9:EnvironmentE5 -5.000e+00 1.045e+00 2.280e+02 -4.785 3.07e-06
## GenotypeR4 - 1:EnvironmentE5 -1.027e+01 1.045e+00 2.280e+02 -9.826 < 2e-16
## GenotypeR4 - 14:EnvironmentE5 -5.433e+00 1.045e+00 2.280e+02 -5.200 4.43e-07
## GenotypeR4 - 6:EnvironmentE5 -1.009e+01 1.045e+00 2.280e+02 -9.656 < 2e-16
## GenotypeR4 - 8:EnvironmentE5 -1.180e+01 1.045e+00 2.280e+02 -11.294 < 2e-16
## GenotypeSC1:EnvironmentE5 -7.100e+00 1.045e+00 2.280e+02 -6.795 9.32e-11
## GenotypeSC2:EnvironmentE5 -2.544e+00 1.045e+00 2.280e+02 -2.435 0.015649
## GenotypeSC3:EnvironmentE5 -4.056e+00 1.045e+00 2.280e+02 -3.882 0.000136
## GenotypeSC4:EnvironmentE5 -4.933e+00 1.045e+00 2.280e+02 -4.722 4.09e-06
## GenotypeR1 - 20:EnvironmentE6 3.433e+00 1.045e+00 2.280e+02 3.286 0.001177
## GenotypeR2 - 10:EnvironmentE6 1.333e+00 1.045e+00 2.280e+02 1.276 0.203205
## GenotypeR2 - 15:EnvironmentE6 -3.900e+00 1.045e+00 2.280e+02 -3.733 0.000239
## GenotypeR3 - 1:EnvironmentE6 1.000e-01 1.045e+00 2.280e+02 0.096 0.923825
## GenotypeR3 - 10:EnvironmentE6 6.400e+00 1.045e+00 2.280e+02 6.125 3.93e-09
## GenotypeR3 - 14:EnvironmentE6 1.233e+00 1.045e+00 2.280e+02 1.180 0.239069
## GenotypeR3 - 17:EnvironmentE6 7.111e-01 1.045e+00 2.280e+02 0.681 0.496813
## GenotypeR3 - 19:EnvironmentE6 1.147e+01 1.045e+00 2.280e+02 10.975 < 2e-16
## GenotypeR3 - 4:EnvironmentE6 -1.778e+00 1.045e+00 2.280e+02 -1.701 0.090216
## GenotypeR3 - 7:EnvironmentE6 3.667e-01 1.045e+00 2.280e+02 0.351 0.725965
## GenotypeR3 - 9:EnvironmentE6 2.883e+00 1.045e+00 2.280e+02 2.760 0.006257
## GenotypeR4 - 1:EnvironmentE6 -1.667e+00 1.045e+00 2.280e+02 -1.595 0.112068
## GenotypeR4 - 14:EnvironmentE6 3.500e+00 1.045e+00 2.280e+02 3.350 0.000946
## GenotypeR4 - 6:EnvironmentE6 4.167e+00 1.045e+00 2.280e+02 3.988 8.98e-05
## GenotypeR4 - 8:EnvironmentE6 -3.500e+00 1.045e+00 2.280e+02 -3.350 0.000946
## GenotypeSC1:EnvironmentE6 -6.667e-01 1.045e+00 2.280e+02 -0.638 0.524084
## GenotypeSC2:EnvironmentE6 4.767e+00 1.045e+00 2.280e+02 4.562 8.27e-06
## GenotypeSC3:EnvironmentE6 -3.333e-02 1.045e+00 2.280e+02 -0.032 0.974579
## GenotypeSC4:EnvironmentE6 -8.000e-01 1.045e+00 2.280e+02 -0.766 0.444669
##
## (Intercept) ***
## GenotypeR1 - 20
## GenotypeR2 - 10 ***
## GenotypeR2 - 15 ***
## GenotypeR3 - 1 ***
## GenotypeR3 - 10 ***
## GenotypeR3 - 14
## GenotypeR3 - 17 *
## GenotypeR3 - 19
## GenotypeR3 - 4 *
## GenotypeR3 - 7
## GenotypeR3 - 9
## GenotypeR4 - 1 ***
## GenotypeR4 - 14
## GenotypeR4 - 6 ***
## GenotypeR4 - 8 ***
## GenotypeSC1 ***
## GenotypeSC2 *
## GenotypeSC3
## GenotypeSC4 .
## EnvironmentE2
## EnvironmentE3 **
## EnvironmentE4 ***
## EnvironmentE5 ***
## EnvironmentE6 *
## GenotypeR1 - 20:EnvironmentE2
## GenotypeR2 - 10:EnvironmentE2 ***
## GenotypeR2 - 15:EnvironmentE2 ***
## GenotypeR3 - 1:EnvironmentE2 ***
## GenotypeR3 - 10:EnvironmentE2
## GenotypeR3 - 14:EnvironmentE2
## GenotypeR3 - 17:EnvironmentE2 .
## GenotypeR3 - 19:EnvironmentE2 **
## GenotypeR3 - 4:EnvironmentE2
## GenotypeR3 - 7:EnvironmentE2 **
## GenotypeR3 - 9:EnvironmentE2
## GenotypeR4 - 1:EnvironmentE2
## GenotypeR4 - 14:EnvironmentE2 *
## GenotypeR4 - 6:EnvironmentE2
## GenotypeR4 - 8:EnvironmentE2 ***
## GenotypeSC1:EnvironmentE2 **
## GenotypeSC2:EnvironmentE2 *
## GenotypeSC3:EnvironmentE2
## GenotypeSC4:EnvironmentE2 **
## GenotypeR1 - 20:EnvironmentE3 .
## GenotypeR2 - 10:EnvironmentE3 ***
## GenotypeR2 - 15:EnvironmentE3 *
## GenotypeR3 - 1:EnvironmentE3
## GenotypeR3 - 10:EnvironmentE3
## GenotypeR3 - 14:EnvironmentE3 .
## GenotypeR3 - 17:EnvironmentE3
## GenotypeR3 - 19:EnvironmentE3 *
## GenotypeR3 - 4:EnvironmentE3 ***
## GenotypeR3 - 7:EnvironmentE3 ***
## GenotypeR3 - 9:EnvironmentE3
## GenotypeR4 - 1:EnvironmentE3 **
## GenotypeR4 - 14:EnvironmentE3 ***
## GenotypeR4 - 6:EnvironmentE3 ***
## GenotypeR4 - 8:EnvironmentE3 ***
## GenotypeSC1:EnvironmentE3 ***
## GenotypeSC2:EnvironmentE3
## GenotypeSC3:EnvironmentE3
## GenotypeSC4:EnvironmentE3 .
## GenotypeR1 - 20:EnvironmentE4 ***
## GenotypeR2 - 10:EnvironmentE4 *
## GenotypeR2 - 15:EnvironmentE4 ***
## GenotypeR3 - 1:EnvironmentE4 ***
## GenotypeR3 - 10:EnvironmentE4 **
## GenotypeR3 - 14:EnvironmentE4 ***
## GenotypeR3 - 17:EnvironmentE4 .
## GenotypeR3 - 19:EnvironmentE4 ***
## GenotypeR3 - 4:EnvironmentE4 ***
## GenotypeR3 - 7:EnvironmentE4 **
## GenotypeR3 - 9:EnvironmentE4
## GenotypeR4 - 1:EnvironmentE4 *
## GenotypeR4 - 14:EnvironmentE4
## GenotypeR4 - 6:EnvironmentE4 ***
## GenotypeR4 - 8:EnvironmentE4 ***
## GenotypeSC1:EnvironmentE4
## GenotypeSC2:EnvironmentE4 .
## GenotypeSC3:EnvironmentE4 *
## GenotypeSC4:EnvironmentE4 ***
## GenotypeR1 - 20:EnvironmentE5 *
## GenotypeR2 - 10:EnvironmentE5 ***
## GenotypeR2 - 15:EnvironmentE5 ***
## GenotypeR3 - 1:EnvironmentE5 ***
## GenotypeR3 - 10:EnvironmentE5 ***
## GenotypeR3 - 14:EnvironmentE5 ***
## GenotypeR3 - 17:EnvironmentE5 ***
## GenotypeR3 - 19:EnvironmentE5 ***
## GenotypeR3 - 4:EnvironmentE5 ***
## GenotypeR3 - 7:EnvironmentE5 **
## GenotypeR3 - 9:EnvironmentE5 ***
## GenotypeR4 - 1:EnvironmentE5 ***
## GenotypeR4 - 14:EnvironmentE5 ***
## GenotypeR4 - 6:EnvironmentE5 ***
## GenotypeR4 - 8:EnvironmentE5 ***
## GenotypeSC1:EnvironmentE5 ***
## GenotypeSC2:EnvironmentE5 *
## GenotypeSC3:EnvironmentE5 ***
## GenotypeSC4:EnvironmentE5 ***
## GenotypeR1 - 20:EnvironmentE6 **
## GenotypeR2 - 10:EnvironmentE6
## GenotypeR2 - 15:EnvironmentE6 ***
## GenotypeR3 - 1:EnvironmentE6
## GenotypeR3 - 10:EnvironmentE6 ***
## GenotypeR3 - 14:EnvironmentE6
## GenotypeR3 - 17:EnvironmentE6
## GenotypeR3 - 19:EnvironmentE6 ***
## GenotypeR3 - 4:EnvironmentE6 .
## GenotypeR3 - 7:EnvironmentE6
## GenotypeR3 - 9:EnvironmentE6 **
## GenotypeR4 - 1:EnvironmentE6
## GenotypeR4 - 14:EnvironmentE6 ***
## GenotypeR4 - 6:EnvironmentE6 ***
## GenotypeR4 - 8:EnvironmentE6 ***
## GenotypeSC1:EnvironmentE6
## GenotypeSC2:EnvironmentE6 ***
## GenotypeSC3:EnvironmentE6
## GenotypeSC4:EnvironmentE6
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Correlation matrix not shown by default, as p = 120 > 12.
## Use print(x, correlation=TRUE) or
## vcov(x) if you need it================================================================
12. UJI FIXED EFFECT
================================================================
Menguji:
1. Genotype
2. Environment
3. Genotype x Environment
================================================================
anova(model_yield)## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## Genotype 416.42 21.917 19 228 26.768 < 2.2e-16 ***
## Environment 195.92 39.185 5 12 47.858 1.633e-07 ***
## Genotype:Environment 1819.33 19.151 95 228 23.390 < 2.2e-16 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1================================================================
13. KOMPONEN RANDOM EFFECT
================================================================
VarCorr(model_yield)## Groups Name Std.Dev.
## Environment:Replications (Intercept) 0.15207
## Residual 0.90486# Menampilkan variance dan standard deviation
as.data.frame(
VarCorr(model_yield)
)## grp var1 var2 vcov sdcor
## 1 Environment:Replications (Intercept) <NA> 0.02312672 0.1520747
## 2 Residual <NA> <NA> 0.81877108 0.9048597================================================================
14. MENGHITUNG ICC
================================================================
ICC =
variance random effect /
(variance random effect + variance residual)
================================================================
vc <- as.data.frame(
VarCorr(model_yield)
)
var_random <- vc$vcov[1]
var_residual <- vc$vcov[2]
ICC <- var_random /
(var_random + var_residual)
ICC## [1] 0.02746975# Persentase kontribusi random effect
ICC * 100## [1] 2.746975# Persentase residual
(1 - ICC) * 100## [1] 97.25303================================================================
15. RANDOM EFFECT MASING-MASING BLOCK
================================================================
ranef(model_yield)## $`Environment:Replications`
## (Intercept)
## E1:1 -0.077612164
## E1:2 0.030082234
## E1:3 0.047529930
## E2:1 -0.043017810
## E2:2 0.010228011
## E2:3 0.032789799
## E3:1 0.032087877
## E3:2 -0.042516437
## E3:3 0.010428560
## E4:1 0.143793079
## E4:2 -0.089043413
## E4:3 -0.054749666
## E5:1 0.017848881
## E5:2 0.007019223
## E5:3 -0.024868104
## E6:1 0.069189484
## E6:2 -0.185006664
## E6:3 0.115817180
##
## with conditional variances for "Environment:Replications"================================================================
16. DIAGNOSTIK MODEL
================================================================
# ------------------------------------------------
# 16.1 Residual vs Fitted
# ------------------------------------------------
plot(
model_yield,
main = "Residual vs Fitted"
)
# ------------------------------------------------
# 16.2 Q-Q Plot Residual
# ------------------------------------------------
qqnorm(
residuals(model_yield),
main = "Q-Q Plot Residual"
)
qqline(
residuals(model_yield)
)
# ------------------------------------------------
# 16.3 Q-Q Plot Random Effect
# ------------------------------------------------
random_effect <- ranef(
model_yield
)$`Environment:Replications`[[1]]
qqnorm(
random_effect,
main = "Q-Q Plot Random Effect"
)
qqline(
random_effect
)
# ------------------------------------------------
# 16.4 Pemeriksaan diagnostik otomatis
# ------------------------------------------------
check_model(model_yield)
# ------------------------------------------------
# 16.5 Cek singularity
# ------------------------------------------------
isSingular(
model_yield
)## [1] FALSE# ------------------------------------------------
# 16.6 Cek convergence
# ------------------------------------------------
model_yield@optinfo$conv## $opt
## [1] 0
##
## $lme4
## list()================================================================
17. UJI FIXED EFFECT SECARA LEBIH RINCI
================================================================
# Estimated marginal means Genotype
# TIDAK dijadikan hasil utama jika interaksi signifikan
emm_genotype <- emmeans(
model_yield,
~ Genotype
)## NOTE: Results may be misleading due to involvement in interactionsemm_genotype## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 5.78 0.216 237 5.36 6.21
## R1 - 20 5.34 0.216 237 4.91 5.76
## R2 - 10 8.01 0.216 237 7.58 8.43
## R2 - 15 5.46 0.216 237 5.04 5.89
## R3 - 1 5.69 0.216 237 5.27 6.12
## R3 - 10 8.63 0.216 237 8.20 9.05
## R3 - 14 3.96 0.216 237 3.54 4.39
## R3 - 17 5.61 0.216 237 5.18 6.04
## R3 - 19 6.24 0.216 237 5.81 6.66
## R3 - 4 4.90 0.216 237 4.47 5.32
## R3 - 7 6.58 0.216 237 6.15 7.00
## R3 - 9 5.73 0.216 237 5.30 6.16
## R4 - 1 6.99 0.216 237 6.57 7.42
## R4 - 14 5.59 0.216 237 5.16 6.01
## R4 - 6 5.63 0.216 237 5.20 6.06
## R4 - 8 4.94 0.216 237 4.52 5.37
## SC1 5.80 0.216 237 5.37 6.23
## SC2 5.29 0.216 237 4.86 5.71
## SC3 4.95 0.216 237 4.52 5.37
## SC4 4.51 0.216 237 4.08 4.93
##
## Results are averaged over the levels of: Environment
## Degrees-of-freedom method: kenward-roger
## Confidence level used: 0.95================================================================
18. KARENA INTERAKSI GxE SIGNIFIKAN:
ANALISIS GENOTYPE PADA SETIAP ENVIRONMENT
================================================================
emm_GE <- emmeans(
model_yield,
~ Genotype | Environment
)
emm_GE## Environment = E1:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 4.23 0.53 237 3.190 5.28
## R1 - 20 4.23 0.53 237 3.190 5.28
## R2 - 10 8.90 0.53 237 7.856 9.94
## R2 - 15 7.27 0.53 237 6.223 8.31
## R3 - 1 7.07 0.53 237 6.023 8.11
## R3 - 10 6.87 0.53 237 5.823 7.91
## R3 - 14 3.80 0.53 237 2.756 4.84
## R3 - 17 6.02 0.53 237 4.979 7.07
## R3 - 19 5.43 0.53 237 4.390 6.48
## R3 - 4 5.71 0.53 237 4.667 6.75
## R3 - 7 3.67 0.53 237 2.623 4.71
## R3 - 9 4.87 0.53 237 3.823 5.91
## R4 - 1 7.60 0.53 237 6.556 8.64
## R4 - 14 3.27 0.53 237 2.223 4.31
## R4 - 6 7.30 0.53 237 6.256 8.34
## R4 - 8 8.80 0.53 237 7.756 9.84
## SC1 6.80 0.53 237 5.756 7.84
## SC2 2.73 0.53 237 1.690 3.78
## SC3 4.60 0.53 237 3.556 5.64
## SC4 5.63 0.53 237 4.590 6.68
##
## Environment = E2:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 4.37 0.53 237 3.323 5.41
## R1 - 20 5.27 0.53 237 4.223 6.31
## R2 - 10 4.33 0.53 237 3.290 5.38
## R2 - 15 2.43 0.53 237 1.390 3.48
## R3 - 1 3.47 0.53 237 2.423 4.51
## R3 - 10 6.53 0.53 237 5.490 7.58
## R3 - 14 5.00 0.53 237 3.956 6.04
## R3 - 17 4.23 0.53 237 3.190 5.28
## R3 - 19 2.77 0.53 237 1.723 3.81
## R3 - 4 6.40 0.53 237 5.356 7.44
## R3 - 7 7.07 0.53 237 6.023 8.11
## R3 - 9 4.77 0.53 237 3.723 5.81
## R4 - 1 7.27 0.53 237 6.223 8.31
## R4 - 14 6.05 0.53 237 5.006 7.09
## R4 - 6 6.40 0.53 237 5.356 7.44
## R4 - 8 5.03 0.53 237 3.990 6.08
## SC1 4.13 0.53 237 3.090 5.18
## SC2 5.20 0.53 237 4.156 6.24
## SC3 5.13 0.53 237 4.090 6.18
## SC4 2.97 0.53 237 1.923 4.01
##
## Environment = E3:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 6.33 0.53 237 5.290 7.38
## R1 - 20 8.20 0.53 237 7.156 9.24
## R2 - 10 6.07 0.53 237 5.023 7.11
## R2 - 15 6.83 0.53 237 5.790 7.88
## R3 - 1 8.67 0.53 237 7.623 9.71
## R3 - 10 7.77 0.53 237 6.723 8.81
## R3 - 14 4.17 0.53 237 3.123 5.21
## R3 - 17 7.07 0.53 237 6.023 8.11
## R3 - 19 5.13 0.53 237 4.090 6.18
## R3 - 4 4.20 0.53 237 3.156 5.24
## R3 - 7 10.60 0.53 237 9.556 11.64
## R3 - 9 6.44 0.53 237 5.401 7.49
## R4 - 1 6.57 0.53 237 5.523 7.61
## R4 - 14 8.91 0.53 237 7.868 9.95
## R4 - 6 5.07 0.53 237 4.023 6.11
## R4 - 8 2.53 0.53 237 1.490 3.58
## SC1 3.70 0.53 237 2.656 4.74
## SC2 4.47 0.53 237 3.423 5.51
## SC3 5.87 0.53 237 4.823 6.91
## SC4 5.83 0.53 237 4.790 6.88
##
## Environment = E4:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 8.03 0.53 237 6.990 9.08
## R1 - 20 1.57 0.53 237 0.523 2.61
## R2 - 10 15.33 0.53 237 14.290 16.38
## R2 - 15 6.77 0.53 237 5.723 7.81
## R3 - 1 7.00 0.53 237 5.956 8.04
## R3 - 10 13.40 0.53 237 12.356 14.44
## R3 - 14 2.73 0.53 237 1.690 3.78
## R3 - 17 8.07 0.53 237 7.023 9.11
## R3 - 19 5.40 0.53 237 4.356 6.44
## R3 - 4 4.13 0.53 237 3.090 5.18
## R3 - 7 10.47 0.53 237 9.423 11.51
## R3 - 9 7.42 0.53 237 6.373 8.46
## R4 - 1 14.00 0.53 237 12.956 15.04
## R4 - 14 7.43 0.53 237 6.390 8.48
## R4 - 6 3.07 0.53 237 2.023 4.11
## R4 - 8 7.72 0.53 237 6.673 8.76
## SC1 11.07 0.53 237 10.023 12.11
## SC2 8.37 0.53 237 7.323 9.41
## SC3 5.70 0.53 237 4.656 6.74
## SC4 3.80 0.53 237 2.756 4.84
##
## Environment = E5:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 9.33 0.53 237 8.290 10.38
## R1 - 20 6.93 0.53 237 5.890 7.98
## R2 - 10 5.00 0.53 237 3.956 6.04
## R2 - 15 7.93 0.53 237 6.890 8.98
## R3 - 1 2.63 0.53 237 1.590 3.68
## R3 - 10 5.77 0.53 237 4.723 6.81
## R3 - 14 4.87 0.53 237 3.823 5.91
## R3 - 17 3.37 0.53 237 2.323 4.41
## R3 - 19 3.63 0.53 237 2.590 4.68
## R3 - 4 6.83 0.53 237 5.790 7.88
## R3 - 7 5.47 0.53 237 4.423 6.51
## R3 - 9 4.97 0.53 237 3.923 6.01
## R4 - 1 2.43 0.53 237 1.390 3.48
## R4 - 14 2.93 0.53 237 1.890 3.98
## R4 - 6 2.31 0.53 237 1.267 3.35
## R4 - 8 2.10 0.53 237 1.056 3.14
## SC1 4.80 0.53 237 3.756 5.84
## SC2 5.29 0.53 237 4.245 6.33
## SC3 5.64 0.53 237 4.601 6.69
## SC4 5.80 0.53 237 4.756 6.84
##
## Environment = E6:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 2.40 0.53 237 1.356 3.44
## R1 - 20 5.83 0.53 237 4.790 6.88
## R2 - 10 8.40 0.53 237 7.356 9.44
## R2 - 15 1.53 0.53 237 0.490 2.58
## R3 - 1 5.33 0.53 237 4.290 6.38
## R3 - 10 11.43 0.53 237 10.390 12.48
## R3 - 14 3.20 0.53 237 2.156 4.24
## R3 - 17 4.90 0.53 237 3.856 5.94
## R3 - 19 15.07 0.53 237 14.023 16.11
## R3 - 4 2.10 0.53 237 1.056 3.14
## R3 - 7 2.20 0.53 237 1.156 3.24
## R3 - 9 5.92 0.53 237 4.873 6.96
## R4 - 1 4.10 0.53 237 3.056 5.14
## R4 - 14 4.93 0.53 237 3.890 5.98
## R4 - 6 9.63 0.53 237 8.590 10.68
## R4 - 8 3.47 0.53 237 2.423 4.51
## SC1 4.30 0.53 237 3.256 5.34
## SC2 5.67 0.53 237 4.623 6.71
## SC3 2.73 0.53 237 1.690 3.78
## SC4 3.00 0.53 237 1.956 4.04
##
## Degrees-of-freedom method: kenward-roger
## Confidence level used: 0.95================================================================
19. UJI PERBANDINGAN GENOTYPE
PADA MASING-MASING ENVIRONMENT
================================================================
pairs(
emm_GE,
adjust = "tukey"
)## Environment = E1:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) 0.0000 0.739 228 0.000 1.0000
## (R1 - 1) - (R2 - 10) -4.6667 0.739 228 -6.316 <0.0001
## (R1 - 1) - (R2 - 15) -3.0333 0.739 228 -4.106 0.0084
## (R1 - 1) - (R3 - 1) -2.8333 0.739 228 -3.835 0.0222
## (R1 - 1) - (R3 - 10) -2.6333 0.739 228 -3.564 0.0535
## (R1 - 1) - (R3 - 14) 0.4333 0.739 228 0.587 1.0000
## (R1 - 1) - (R3 - 17) -1.7889 0.739 228 -2.421 0.6449
## (R1 - 1) - (R3 - 19) -1.2000 0.739 228 -1.624 0.9863
## (R1 - 1) - (R3 - 4) -1.4778 0.739 228 -2.000 0.8993
## (R1 - 1) - (R3 - 7) 0.5667 0.739 228 0.767 1.0000
## (R1 - 1) - (R3 - 9) -0.6333 0.739 228 -0.857 1.0000
## (R1 - 1) - (R4 - 1) -3.3667 0.739 228 -4.557 0.0014
## (R1 - 1) - (R4 - 14) 0.9667 0.739 228 1.308 0.9990
## (R1 - 1) - (R4 - 6) -3.0667 0.739 228 -4.151 0.0071
## (R1 - 1) - (R4 - 8) -4.5667 0.739 228 -6.181 <0.0001
## (R1 - 1) - SC1 -2.5667 0.739 228 -3.474 0.0703
## (R1 - 1) - SC2 1.5000 0.739 228 2.030 0.8866
## (R1 - 1) - SC3 -0.3667 0.739 228 -0.496 1.0000
## (R1 - 1) - SC4 -1.4000 0.739 228 -1.895 0.9363
## (R1 - 20) - (R2 - 10) -4.6667 0.739 228 -6.316 <0.0001
## (R1 - 20) - (R2 - 15) -3.0333 0.739 228 -4.106 0.0084
## (R1 - 20) - (R3 - 1) -2.8333 0.739 228 -3.835 0.0222
## (R1 - 20) - (R3 - 10) -2.6333 0.739 228 -3.564 0.0535
## (R1 - 20) - (R3 - 14) 0.4333 0.739 228 0.587 1.0000
## (R1 - 20) - (R3 - 17) -1.7889 0.739 228 -2.421 0.6449
## (R1 - 20) - (R3 - 19) -1.2000 0.739 228 -1.624 0.9863
## (R1 - 20) - (R3 - 4) -1.4778 0.739 228 -2.000 0.8993
## (R1 - 20) - (R3 - 7) 0.5667 0.739 228 0.767 1.0000
## (R1 - 20) - (R3 - 9) -0.6333 0.739 228 -0.857 1.0000
## (R1 - 20) - (R4 - 1) -3.3667 0.739 228 -4.557 0.0014
## (R1 - 20) - (R4 - 14) 0.9667 0.739 228 1.308 0.9990
## (R1 - 20) - (R4 - 6) -3.0667 0.739 228 -4.151 0.0071
## (R1 - 20) - (R4 - 8) -4.5667 0.739 228 -6.181 <0.0001
## (R1 - 20) - SC1 -2.5667 0.739 228 -3.474 0.0703
## (R1 - 20) - SC2 1.5000 0.739 228 2.030 0.8866
## (R1 - 20) - SC3 -0.3667 0.739 228 -0.496 1.0000
## (R1 - 20) - SC4 -1.4000 0.739 228 -1.895 0.9363
## (R2 - 10) - (R2 - 15) 1.6333 0.739 228 2.211 0.7908
## (R2 - 10) - (R3 - 1) 1.8333 0.739 228 2.481 0.5994
## (R2 - 10) - (R3 - 10) 2.0333 0.739 228 2.752 0.3961
## (R2 - 10) - (R3 - 14) 5.1000 0.739 228 6.903 <0.0001
## (R2 - 10) - (R3 - 17) 2.8778 0.739 228 3.895 0.0180
## (R2 - 10) - (R3 - 19) 3.4667 0.739 228 4.692 0.0008
## (R2 - 10) - (R3 - 4) 3.1889 0.739 228 4.316 0.0037
## (R2 - 10) - (R3 - 7) 5.2333 0.739 228 7.083 <0.0001
## (R2 - 10) - (R3 - 9) 4.0333 0.739 228 5.459 <0.0001
## (R2 - 10) - (R4 - 1) 1.3000 0.739 228 1.760 0.9683
## (R2 - 10) - (R4 - 14) 5.6333 0.739 228 7.625 <0.0001
## (R2 - 10) - (R4 - 6) 1.6000 0.739 228 2.166 0.8178
## (R2 - 10) - (R4 - 8) 0.1000 0.739 228 0.135 1.0000
## (R2 - 10) - SC1 2.1000 0.739 228 2.842 0.3348
## (R2 - 10) - SC2 6.1667 0.739 228 8.347 <0.0001
## (R2 - 10) - SC3 4.3000 0.739 228 5.820 <0.0001
## (R2 - 10) - SC4 3.2667 0.739 228 4.421 0.0025
## (R2 - 15) - (R3 - 1) 0.2000 0.739 228 0.271 1.0000
## (R2 - 15) - (R3 - 10) 0.4000 0.739 228 0.541 1.0000
## (R2 - 15) - (R3 - 14) 3.4667 0.739 228 4.692 0.0008
## (R2 - 15) - (R3 - 17) 1.2444 0.739 228 1.684 0.9797
## (R2 - 15) - (R3 - 19) 1.8333 0.739 228 2.481 0.5994
## (R2 - 15) - (R3 - 4) 1.5556 0.739 228 2.105 0.8507
## (R2 - 15) - (R3 - 7) 3.6000 0.739 228 4.873 0.0004
## (R2 - 15) - (R3 - 9) 2.4000 0.739 228 3.248 0.1319
## (R2 - 15) - (R4 - 1) -0.3333 0.739 228 -0.451 1.0000
## (R2 - 15) - (R4 - 14) 4.0000 0.739 228 5.414 <0.0001
## (R2 - 15) - (R4 - 6) -0.0333 0.739 228 -0.045 1.0000
## (R2 - 15) - (R4 - 8) -1.5333 0.739 228 -2.075 0.8658
## (R2 - 15) - SC1 0.4667 0.739 228 0.632 1.0000
## (R2 - 15) - SC2 4.5333 0.739 228 6.136 <0.0001
## (R2 - 15) - SC3 2.6667 0.739 228 3.609 0.0465
## (R2 - 15) - SC4 1.6333 0.739 228 2.211 0.7908
## (R3 - 1) - (R3 - 10) 0.2000 0.739 228 0.271 1.0000
## (R3 - 1) - (R3 - 14) 3.2667 0.739 228 4.421 0.0025
## (R3 - 1) - (R3 - 17) 1.0444 0.739 228 1.414 0.9973
## (R3 - 1) - (R3 - 19) 1.6333 0.739 228 2.211 0.7908
## (R3 - 1) - (R3 - 4) 1.3556 0.739 228 1.835 0.9525
## (R3 - 1) - (R3 - 7) 3.4000 0.739 228 4.602 0.0012
## (R3 - 1) - (R3 - 9) 2.2000 0.739 228 2.978 0.2531
## (R3 - 1) - (R4 - 1) -0.5333 0.739 228 -0.722 1.0000
## (R3 - 1) - (R4 - 14) 3.8000 0.739 228 5.143 0.0001
## (R3 - 1) - (R4 - 6) -0.2333 0.739 228 -0.316 1.0000
## (R3 - 1) - (R4 - 8) -1.7333 0.739 228 -2.346 0.7001
## (R3 - 1) - SC1 0.2667 0.739 228 0.361 1.0000
## (R3 - 1) - SC2 4.3333 0.739 228 5.865 <0.0001
## (R3 - 1) - SC3 2.4667 0.739 228 3.339 0.1035
## (R3 - 1) - SC4 1.4333 0.739 228 1.940 0.9218
## (R3 - 10) - (R3 - 14) 3.0667 0.739 228 4.151 0.0071
## (R3 - 10) - (R3 - 17) 0.8444 0.739 228 1.143 0.9999
## (R3 - 10) - (R3 - 19) 1.4333 0.739 228 1.940 0.9218
## (R3 - 10) - (R3 - 4) 1.1556 0.739 228 1.564 0.9910
## (R3 - 10) - (R3 - 7) 3.2000 0.739 228 4.331 0.0035
## (R3 - 10) - (R3 - 9) 2.0000 0.739 228 2.707 0.4285
## (R3 - 10) - (R4 - 1) -0.7333 0.739 228 -0.993 1.0000
## (R3 - 10) - (R4 - 14) 3.6000 0.739 228 4.873 0.0004
## (R3 - 10) - (R4 - 6) -0.4333 0.739 228 -0.587 1.0000
## (R3 - 10) - (R4 - 8) -1.9333 0.739 228 -2.617 0.4957
## (R3 - 10) - SC1 0.0667 0.739 228 0.090 1.0000
## (R3 - 10) - SC2 4.1333 0.739 228 5.595 <0.0001
## (R3 - 10) - SC3 2.2667 0.739 228 3.068 0.2064
## (R3 - 10) - SC4 1.2333 0.739 228 1.669 0.9815
## (R3 - 14) - (R3 - 17) -2.2222 0.739 228 -3.008 0.2369
## (R3 - 14) - (R3 - 19) -1.6333 0.739 228 -2.211 0.7908
## (R3 - 14) - (R3 - 4) -1.9111 0.739 228 -2.587 0.5186
## (R3 - 14) - (R3 - 7) 0.1333 0.739 228 0.180 1.0000
## (R3 - 14) - (R3 - 9) -1.0667 0.739 228 -1.444 0.9965
## (R3 - 14) - (R4 - 1) -3.8000 0.739 228 -5.143 0.0001
## (R3 - 14) - (R4 - 14) 0.5333 0.739 228 0.722 1.0000
## (R3 - 14) - (R4 - 6) -3.5000 0.739 228 -4.737 0.0007
## (R3 - 14) - (R4 - 8) -5.0000 0.739 228 -6.768 <0.0001
## (R3 - 14) - SC1 -3.0000 0.739 228 -4.061 0.0099
## (R3 - 14) - SC2 1.0667 0.739 228 1.444 0.9965
## (R3 - 14) - SC3 -0.8000 0.739 228 -1.083 0.9999
## (R3 - 14) - SC4 -1.8333 0.739 228 -2.481 0.5994
## (R3 - 17) - (R3 - 19) 0.5889 0.739 228 0.797 1.0000
## (R3 - 17) - (R3 - 4) 0.3111 0.739 228 0.421 1.0000
## (R3 - 17) - (R3 - 7) 2.3556 0.739 228 3.188 0.1540
## (R3 - 17) - (R3 - 9) 1.1556 0.739 228 1.564 0.9910
## (R3 - 17) - (R4 - 1) -1.5778 0.739 228 -2.136 0.8347
## (R3 - 17) - (R4 - 14) 2.7556 0.739 228 3.730 0.0316
## (R3 - 17) - (R4 - 6) -1.2778 0.739 228 -1.729 0.9733
## (R3 - 17) - (R4 - 8) -2.7778 0.739 228 -3.760 0.0286
## (R3 - 17) - SC1 -0.7778 0.739 228 -1.053 1.0000
## (R3 - 17) - SC2 3.2889 0.739 228 4.452 0.0022
## (R3 - 17) - SC3 1.4222 0.739 228 1.925 0.9269
## (R3 - 17) - SC4 0.3889 0.739 228 0.526 1.0000
## (R3 - 19) - (R3 - 4) -0.2778 0.739 228 -0.376 1.0000
## (R3 - 19) - (R3 - 7) 1.7667 0.739 228 2.391 0.6673
## (R3 - 19) - (R3 - 9) 0.5667 0.739 228 0.767 1.0000
## (R3 - 19) - (R4 - 1) -2.1667 0.739 228 -2.933 0.2789
## (R3 - 19) - (R4 - 14) 2.1667 0.739 228 2.933 0.2789
## (R3 - 19) - (R4 - 6) -1.8667 0.739 228 -2.527 0.5648
## (R3 - 19) - (R4 - 8) -3.3667 0.739 228 -4.557 0.0014
## (R3 - 19) - SC1 -1.3667 0.739 228 -1.850 0.9488
## (R3 - 19) - SC2 2.7000 0.739 228 3.655 0.0403
## (R3 - 19) - SC3 0.8333 0.739 228 1.128 0.9999
## (R3 - 19) - SC4 -0.2000 0.739 228 -0.271 1.0000
## (R3 - 4) - (R3 - 7) 2.0444 0.739 228 2.767 0.3856
## (R3 - 4) - (R3 - 9) 0.8444 0.739 228 1.143 0.9999
## (R3 - 4) - (R4 - 1) -1.8889 0.739 228 -2.557 0.5417
## (R3 - 4) - (R4 - 14) 2.4444 0.739 228 3.309 0.1123
## (R3 - 4) - (R4 - 6) -1.5889 0.739 228 -2.151 0.8263
## (R3 - 4) - (R4 - 8) -3.0889 0.739 228 -4.181 0.0063
## (R3 - 4) - SC1 -1.0889 0.739 228 -1.474 0.9955
## (R3 - 4) - SC2 2.9778 0.739 228 4.030 0.0111
## (R3 - 4) - SC3 1.1111 0.739 228 1.504 0.9943
## (R3 - 4) - SC4 0.0778 0.739 228 0.105 1.0000
## (R3 - 7) - (R3 - 9) -1.2000 0.739 228 -1.624 0.9863
## (R3 - 7) - (R4 - 1) -3.9333 0.739 228 -5.324 <0.0001
## (R3 - 7) - (R4 - 14) 0.4000 0.739 228 0.541 1.0000
## (R3 - 7) - (R4 - 6) -3.6333 0.739 228 -4.918 0.0003
## (R3 - 7) - (R4 - 8) -5.1333 0.739 228 -6.948 <0.0001
## (R3 - 7) - SC1 -3.1333 0.739 228 -4.241 0.0050
## (R3 - 7) - SC2 0.9333 0.739 228 1.263 0.9994
## (R3 - 7) - SC3 -0.9333 0.739 228 -1.263 0.9994
## (R3 - 7) - SC4 -1.9667 0.739 228 -2.662 0.4618
## (R3 - 9) - (R4 - 1) -2.7333 0.739 228 -3.700 0.0349
## (R3 - 9) - (R4 - 14) 1.6000 0.739 228 2.166 0.8178
## (R3 - 9) - (R4 - 6) -2.4333 0.739 228 -3.294 0.1170
## (R3 - 9) - (R4 - 8) -3.9333 0.739 228 -5.324 <0.0001
## (R3 - 9) - SC1 -1.9333 0.739 228 -2.617 0.4957
## (R3 - 9) - SC2 2.1333 0.739 228 2.888 0.3061
## (R3 - 9) - SC3 0.2667 0.739 228 0.361 1.0000
## (R3 - 9) - SC4 -0.7667 0.739 228 -1.038 1.0000
## (R4 - 1) - (R4 - 14) 4.3333 0.739 228 5.865 <0.0001
## (R4 - 1) - (R4 - 6) 0.3000 0.739 228 0.406 1.0000
## (R4 - 1) - (R4 - 8) -1.2000 0.739 228 -1.624 0.9863
## (R4 - 1) - SC1 0.8000 0.739 228 1.083 0.9999
## (R4 - 1) - SC2 4.8667 0.739 228 6.587 <0.0001
## (R4 - 1) - SC3 3.0000 0.739 228 4.061 0.0099
## (R4 - 1) - SC4 1.9667 0.739 228 2.662 0.4618
## (R4 - 14) - (R4 - 6) -4.0333 0.739 228 -5.459 <0.0001
## (R4 - 14) - (R4 - 8) -5.5333 0.739 228 -7.489 <0.0001
## (R4 - 14) - SC1 -3.5333 0.739 228 -4.782 0.0005
## (R4 - 14) - SC2 0.5333 0.739 228 0.722 1.0000
## (R4 - 14) - SC3 -1.3333 0.739 228 -1.805 0.9594
## (R4 - 14) - SC4 -2.3667 0.739 228 -3.203 0.1483
## (R4 - 6) - (R4 - 8) -1.5000 0.739 228 -2.030 0.8866
## (R4 - 6) - SC1 0.5000 0.739 228 0.677 1.0000
## (R4 - 6) - SC2 4.5667 0.739 228 6.181 <0.0001
## (R4 - 6) - SC3 2.7000 0.739 228 3.655 0.0403
## (R4 - 6) - SC4 1.6667 0.739 228 2.256 0.7621
## (R4 - 8) - SC1 2.0000 0.739 228 2.707 0.4285
## (R4 - 8) - SC2 6.0667 0.739 228 8.211 <0.0001
## (R4 - 8) - SC3 4.2000 0.739 228 5.685 <0.0001
## (R4 - 8) - SC4 3.1667 0.739 228 4.286 0.0042
## SC1 - SC2 4.0667 0.739 228 5.504 <0.0001
## SC1 - SC3 2.2000 0.739 228 2.978 0.2531
## SC1 - SC4 1.1667 0.739 228 1.579 0.9900
## SC2 - SC3 -1.8667 0.739 228 -2.527 0.5648
## SC2 - SC4 -2.9000 0.739 228 -3.925 0.0162
## SC3 - SC4 -1.0333 0.739 228 -1.399 0.9977
##
## Environment = E2:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) -0.9000 0.739 228 -1.218 0.9996
## (R1 - 1) - (R2 - 10) 0.0333 0.739 228 0.045 1.0000
## (R1 - 1) - (R2 - 15) 1.9333 0.739 228 2.617 0.4957
## (R1 - 1) - (R3 - 1) 0.9000 0.739 228 1.218 0.9996
## (R1 - 1) - (R3 - 10) -2.1667 0.739 228 -2.933 0.2788
## (R1 - 1) - (R3 - 14) -0.6333 0.739 228 -0.857 1.0000
## (R1 - 1) - (R3 - 17) 0.1333 0.739 228 0.180 1.0000
## (R1 - 1) - (R3 - 19) 1.6000 0.739 228 2.166 0.8178
## (R1 - 1) - (R3 - 4) -2.0333 0.739 228 -2.752 0.3961
## (R1 - 1) - (R3 - 7) -2.7000 0.739 228 -3.655 0.0403
## (R1 - 1) - (R3 - 9) -0.4000 0.739 228 -0.541 1.0000
## (R1 - 1) - (R4 - 1) -2.9000 0.739 228 -3.925 0.0162
## (R1 - 1) - (R4 - 14) -1.6833 0.739 228 -2.278 0.7471
## (R1 - 1) - (R4 - 6) -2.0333 0.739 228 -2.752 0.3961
## (R1 - 1) - (R4 - 8) -0.6667 0.739 228 -0.902 1.0000
## (R1 - 1) - SC1 0.2333 0.739 228 0.316 1.0000
## (R1 - 1) - SC2 -0.8333 0.739 228 -1.128 0.9999
## (R1 - 1) - SC3 -0.7667 0.739 228 -1.038 1.0000
## (R1 - 1) - SC4 1.4000 0.739 228 1.895 0.9363
## (R1 - 20) - (R2 - 10) 0.9333 0.739 228 1.263 0.9994
## (R1 - 20) - (R2 - 15) 2.8333 0.739 228 3.835 0.0222
## (R1 - 20) - (R3 - 1) 1.8000 0.739 228 2.436 0.6336
## (R1 - 20) - (R3 - 10) -1.2667 0.739 228 -1.714 0.9756
## (R1 - 20) - (R3 - 14) 0.2667 0.739 228 0.361 1.0000
## (R1 - 20) - (R3 - 17) 1.0333 0.739 228 1.399 0.9977
## (R1 - 20) - (R3 - 19) 2.5000 0.739 228 3.384 0.0912
## (R1 - 20) - (R3 - 4) -1.1333 0.739 228 -1.534 0.9928
## (R1 - 20) - (R3 - 7) -1.8000 0.739 228 -2.436 0.6336
## (R1 - 20) - (R3 - 9) 0.5000 0.739 228 0.677 1.0000
## (R1 - 20) - (R4 - 1) -2.0000 0.739 228 -2.707 0.4285
## (R1 - 20) - (R4 - 14) -0.7833 0.739 228 -1.060 1.0000
## (R1 - 20) - (R4 - 6) -1.1333 0.739 228 -1.534 0.9928
## (R1 - 20) - (R4 - 8) 0.2333 0.739 228 0.316 1.0000
## (R1 - 20) - SC1 1.1333 0.739 228 1.534 0.9928
## (R1 - 20) - SC2 0.0667 0.739 228 0.090 1.0000
## (R1 - 20) - SC3 0.1333 0.739 228 0.180 1.0000
## (R1 - 20) - SC4 2.3000 0.739 228 3.113 0.1855
## (R2 - 10) - (R2 - 15) 1.9000 0.739 228 2.572 0.5301
## (R2 - 10) - (R3 - 1) 0.8667 0.739 228 1.173 0.9998
## (R2 - 10) - (R3 - 10) -2.2000 0.739 228 -2.978 0.2531
## (R2 - 10) - (R3 - 14) -0.6667 0.739 228 -0.902 1.0000
## (R2 - 10) - (R3 - 17) 0.1000 0.739 228 0.135 1.0000
## (R2 - 10) - (R3 - 19) 1.5667 0.739 228 2.121 0.8428
## (R2 - 10) - (R3 - 4) -2.0667 0.739 228 -2.797 0.3648
## (R2 - 10) - (R3 - 7) -2.7333 0.739 228 -3.700 0.0348
## (R2 - 10) - (R3 - 9) -0.4333 0.739 228 -0.587 1.0000
## (R2 - 10) - (R4 - 1) -2.9333 0.739 228 -3.970 0.0138
## (R2 - 10) - (R4 - 14) -1.7167 0.739 228 -2.324 0.7161
## (R2 - 10) - (R4 - 6) -2.0667 0.739 228 -2.797 0.3648
## (R2 - 10) - (R4 - 8) -0.7000 0.739 228 -0.947 1.0000
## (R2 - 10) - SC1 0.2000 0.739 228 0.271 1.0000
## (R2 - 10) - SC2 -0.8667 0.739 228 -1.173 0.9998
## (R2 - 10) - SC3 -0.8000 0.739 228 -1.083 0.9999
## (R2 - 10) - SC4 1.3667 0.739 228 1.850 0.9488
## (R2 - 15) - (R3 - 1) -1.0333 0.739 228 -1.399 0.9977
## (R2 - 15) - (R3 - 10) -4.1000 0.739 228 -5.549 <0.0001
## (R2 - 15) - (R3 - 14) -2.5667 0.739 228 -3.474 0.0703
## (R2 - 15) - (R3 - 17) -1.8000 0.739 228 -2.436 0.6336
## (R2 - 15) - (R3 - 19) -0.3333 0.739 228 -0.451 1.0000
## (R2 - 15) - (R3 - 4) -3.9667 0.739 228 -5.369 <0.0001
## (R2 - 15) - (R3 - 7) -4.6334 0.739 228 -6.271 <0.0001
## (R2 - 15) - (R3 - 9) -2.3333 0.739 228 -3.158 0.1661
## (R2 - 15) - (R4 - 1) -4.8334 0.739 228 -6.542 <0.0001
## (R2 - 15) - (R4 - 14) -3.6167 0.739 228 -4.895 0.0003
## (R2 - 15) - (R4 - 6) -3.9667 0.739 228 -5.369 <0.0001
## (R2 - 15) - (R4 - 8) -2.6000 0.739 228 -3.519 0.0614
## (R2 - 15) - SC1 -1.7000 0.739 228 -2.301 0.7318
## (R2 - 15) - SC2 -2.7667 0.739 228 -3.745 0.0300
## (R2 - 15) - SC3 -2.7000 0.739 228 -3.655 0.0403
## (R2 - 15) - SC4 -0.5333 0.739 228 -0.722 1.0000
## (R3 - 1) - (R3 - 10) -3.0667 0.739 228 -4.151 0.0071
## (R3 - 1) - (R3 - 14) -1.5333 0.739 228 -2.075 0.8658
## (R3 - 1) - (R3 - 17) -0.7667 0.739 228 -1.038 1.0000
## (R3 - 1) - (R3 - 19) 0.7000 0.739 228 0.947 1.0000
## (R3 - 1) - (R3 - 4) -2.9333 0.739 228 -3.970 0.0138
## (R3 - 1) - (R3 - 7) -3.6000 0.739 228 -4.873 0.0004
## (R3 - 1) - (R3 - 9) -1.3000 0.739 228 -1.760 0.9683
## (R3 - 1) - (R4 - 1) -3.8000 0.739 228 -5.143 0.0001
## (R3 - 1) - (R4 - 14) -2.5833 0.739 228 -3.497 0.0657
## (R3 - 1) - (R4 - 6) -2.9333 0.739 228 -3.970 0.0138
## (R3 - 1) - (R4 - 8) -1.5667 0.739 228 -2.121 0.8428
## (R3 - 1) - SC1 -0.6667 0.739 228 -0.902 1.0000
## (R3 - 1) - SC2 -1.7333 0.739 228 -2.346 0.7001
## (R3 - 1) - SC3 -1.6667 0.739 228 -2.256 0.7621
## (R3 - 1) - SC4 0.5000 0.739 228 0.677 1.0000
## (R3 - 10) - (R3 - 14) 1.5333 0.739 228 2.075 0.8658
## (R3 - 10) - (R3 - 17) 2.3000 0.739 228 3.113 0.1855
## (R3 - 10) - (R3 - 19) 3.7667 0.739 228 5.098 0.0001
## (R3 - 10) - (R3 - 4) 0.1333 0.739 228 0.180 1.0000
## (R3 - 10) - (R3 - 7) -0.5333 0.739 228 -0.722 1.0000
## (R3 - 10) - (R3 - 9) 1.7667 0.739 228 2.391 0.6673
## (R3 - 10) - (R4 - 1) -0.7333 0.739 228 -0.993 1.0000
## (R3 - 10) - (R4 - 14) 0.4833 0.739 228 0.654 1.0000
## (R3 - 10) - (R4 - 6) 0.1333 0.739 228 0.180 1.0000
## (R3 - 10) - (R4 - 8) 1.5000 0.739 228 2.030 0.8866
## (R3 - 10) - SC1 2.4000 0.739 228 3.248 0.1319
## (R3 - 10) - SC2 1.3333 0.739 228 1.805 0.9594
## (R3 - 10) - SC3 1.4000 0.739 228 1.895 0.9363
## (R3 - 10) - SC4 3.5667 0.739 228 4.828 0.0004
## (R3 - 14) - (R3 - 17) 0.7667 0.739 228 1.038 1.0000
## (R3 - 14) - (R3 - 19) 2.2333 0.739 228 3.023 0.2290
## (R3 - 14) - (R3 - 4) -1.4000 0.739 228 -1.895 0.9363
## (R3 - 14) - (R3 - 7) -2.0667 0.739 228 -2.797 0.3648
## (R3 - 14) - (R3 - 9) 0.2333 0.739 228 0.316 1.0000
## (R3 - 14) - (R4 - 1) -2.2667 0.739 228 -3.068 0.2064
## (R3 - 14) - (R4 - 14) -1.0500 0.739 228 -1.421 0.9972
## (R3 - 14) - (R4 - 6) -1.4000 0.739 228 -1.895 0.9363
## (R3 - 14) - (R4 - 8) -0.0333 0.739 228 -0.045 1.0000
## (R3 - 14) - SC1 0.8667 0.739 228 1.173 0.9998
## (R3 - 14) - SC2 -0.2000 0.739 228 -0.271 1.0000
## (R3 - 14) - SC3 -0.1333 0.739 228 -0.180 1.0000
## (R3 - 14) - SC4 2.0333 0.739 228 2.752 0.3961
## (R3 - 17) - (R3 - 19) 1.4667 0.739 228 1.985 0.9053
## (R3 - 17) - (R3 - 4) -2.1667 0.739 228 -2.933 0.2788
## (R3 - 17) - (R3 - 7) -2.8333 0.739 228 -3.835 0.0222
## (R3 - 17) - (R3 - 9) -0.5333 0.739 228 -0.722 1.0000
## (R3 - 17) - (R4 - 1) -3.0333 0.739 228 -4.106 0.0084
## (R3 - 17) - (R4 - 14) -1.8167 0.739 228 -2.459 0.6165
## (R3 - 17) - (R4 - 6) -2.1667 0.739 228 -2.933 0.2788
## (R3 - 17) - (R4 - 8) -0.8000 0.739 228 -1.083 0.9999
## (R3 - 17) - SC1 0.1000 0.739 228 0.135 1.0000
## (R3 - 17) - SC2 -0.9667 0.739 228 -1.308 0.9990
## (R3 - 17) - SC3 -0.9000 0.739 228 -1.218 0.9996
## (R3 - 17) - SC4 1.2667 0.739 228 1.714 0.9756
## (R3 - 19) - (R3 - 4) -3.6334 0.739 228 -4.918 0.0003
## (R3 - 19) - (R3 - 7) -4.3000 0.739 228 -5.820 <0.0001
## (R3 - 19) - (R3 - 9) -2.0000 0.739 228 -2.707 0.4285
## (R3 - 19) - (R4 - 1) -4.5000 0.739 228 -6.091 <0.0001
## (R3 - 19) - (R4 - 14) -3.2833 0.739 228 -4.444 0.0022
## (R3 - 19) - (R4 - 6) -3.6334 0.739 228 -4.918 0.0003
## (R3 - 19) - (R4 - 8) -2.2667 0.739 228 -3.068 0.2064
## (R3 - 19) - SC1 -1.3667 0.739 228 -1.850 0.9488
## (R3 - 19) - SC2 -2.4333 0.739 228 -3.294 0.1170
## (R3 - 19) - SC3 -2.3667 0.739 228 -3.203 0.1483
## (R3 - 19) - SC4 -0.2000 0.739 228 -0.271 1.0000
## (R3 - 4) - (R3 - 7) -0.6667 0.739 228 -0.902 1.0000
## (R3 - 4) - (R3 - 9) 1.6333 0.739 228 2.211 0.7908
## (R3 - 4) - (R4 - 1) -0.8667 0.739 228 -1.173 0.9998
## (R3 - 4) - (R4 - 14) 0.3500 0.739 228 0.474 1.0000
## (R3 - 4) - (R4 - 6) 0.0000 0.739 228 0.000 1.0000
## (R3 - 4) - (R4 - 8) 1.3667 0.739 228 1.850 0.9488
## (R3 - 4) - SC1 2.2667 0.739 228 3.068 0.2064
## (R3 - 4) - SC2 1.2000 0.739 228 1.624 0.9863
## (R3 - 4) - SC3 1.2667 0.739 228 1.714 0.9756
## (R3 - 4) - SC4 3.4334 0.739 228 4.647 0.0010
## (R3 - 7) - (R3 - 9) 2.3000 0.739 228 3.113 0.1855
## (R3 - 7) - (R4 - 1) -0.2000 0.739 228 -0.271 1.0000
## (R3 - 7) - (R4 - 14) 1.0167 0.739 228 1.376 0.9981
## (R3 - 7) - (R4 - 6) 0.6667 0.739 228 0.902 1.0000
## (R3 - 7) - (R4 - 8) 2.0333 0.739 228 2.752 0.3961
## (R3 - 7) - SC1 2.9333 0.739 228 3.970 0.0138
## (R3 - 7) - SC2 1.8667 0.739 228 2.527 0.5648
## (R3 - 7) - SC3 1.9333 0.739 228 2.617 0.4957
## (R3 - 7) - SC4 4.1000 0.739 228 5.549 <0.0001
## (R3 - 9) - (R4 - 1) -2.5000 0.739 228 -3.384 0.0912
## (R3 - 9) - (R4 - 14) -1.2833 0.739 228 -1.737 0.9721
## (R3 - 9) - (R4 - 6) -1.6333 0.739 228 -2.211 0.7908
## (R3 - 9) - (R4 - 8) -0.2667 0.739 228 -0.361 1.0000
## (R3 - 9) - SC1 0.6333 0.739 228 0.857 1.0000
## (R3 - 9) - SC2 -0.4333 0.739 228 -0.587 1.0000
## (R3 - 9) - SC3 -0.3667 0.739 228 -0.496 1.0000
## (R3 - 9) - SC4 1.8000 0.739 228 2.436 0.6336
## (R4 - 1) - (R4 - 14) 1.2167 0.739 228 1.647 0.9840
## (R4 - 1) - (R4 - 6) 0.8667 0.739 228 1.173 0.9998
## (R4 - 1) - (R4 - 8) 2.2333 0.739 228 3.023 0.2290
## (R4 - 1) - SC1 3.1333 0.739 228 4.241 0.0050
## (R4 - 1) - SC2 2.0667 0.739 228 2.797 0.3648
## (R4 - 1) - SC3 2.1333 0.739 228 2.888 0.3061
## (R4 - 1) - SC4 4.3000 0.739 228 5.820 <0.0001
## (R4 - 14) - (R4 - 6) -0.3500 0.739 228 -0.474 1.0000
## (R4 - 14) - (R4 - 8) 1.0167 0.739 228 1.376 0.9981
## (R4 - 14) - SC1 1.9167 0.739 228 2.594 0.5129
## (R4 - 14) - SC2 0.8500 0.739 228 1.150 0.9998
## (R4 - 14) - SC3 0.9167 0.739 228 1.241 0.9995
## (R4 - 14) - SC4 3.0833 0.739 228 4.173 0.0065
## (R4 - 6) - (R4 - 8) 1.3667 0.739 228 1.850 0.9488
## (R4 - 6) - SC1 2.2667 0.739 228 3.068 0.2064
## (R4 - 6) - SC2 1.2000 0.739 228 1.624 0.9863
## (R4 - 6) - SC3 1.2667 0.739 228 1.714 0.9756
## (R4 - 6) - SC4 3.4334 0.739 228 4.647 0.0010
## (R4 - 8) - SC1 0.9000 0.739 228 1.218 0.9996
## (R4 - 8) - SC2 -0.1667 0.739 228 -0.226 1.0000
## (R4 - 8) - SC3 -0.1000 0.739 228 -0.135 1.0000
## (R4 - 8) - SC4 2.0667 0.739 228 2.797 0.3648
## SC1 - SC2 -1.0667 0.739 228 -1.444 0.9965
## SC1 - SC3 -1.0000 0.739 228 -1.354 0.9985
## SC1 - SC4 1.1667 0.739 228 1.579 0.9900
## SC2 - SC3 0.0667 0.739 228 0.090 1.0000
## SC2 - SC4 2.2333 0.739 228 3.023 0.2290
## SC3 - SC4 2.1667 0.739 228 2.933 0.2788
##
## Environment = E3:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) -1.8667 0.739 228 -2.527 0.5648
## (R1 - 1) - (R2 - 10) 0.2667 0.739 228 0.361 1.0000
## (R1 - 1) - (R2 - 15) -0.5000 0.739 228 -0.677 1.0000
## (R1 - 1) - (R3 - 1) -2.3333 0.739 228 -3.158 0.1661
## (R1 - 1) - (R3 - 10) -1.4333 0.739 228 -1.940 0.9218
## (R1 - 1) - (R3 - 14) 2.1667 0.739 228 2.933 0.2788
## (R1 - 1) - (R3 - 17) -0.7333 0.739 228 -0.993 1.0000
## (R1 - 1) - (R3 - 19) 1.2000 0.739 228 1.624 0.9863
## (R1 - 1) - (R3 - 4) 2.1333 0.739 228 2.888 0.3061
## (R1 - 1) - (R3 - 7) -4.2667 0.739 228 -5.775 <0.0001
## (R1 - 1) - (R3 - 9) -0.1111 0.739 228 -0.150 1.0000
## (R1 - 1) - (R4 - 1) -0.2333 0.739 228 -0.316 1.0000
## (R1 - 1) - (R4 - 14) -2.5778 0.739 228 -3.489 0.0672
## (R1 - 1) - (R4 - 6) 1.2667 0.739 228 1.714 0.9756
## (R1 - 1) - (R4 - 8) 3.8000 0.739 228 5.143 0.0001
## (R1 - 1) - SC1 2.6333 0.739 228 3.564 0.0535
## (R1 - 1) - SC2 1.8667 0.739 228 2.527 0.5648
## (R1 - 1) - SC3 0.4667 0.739 228 0.632 1.0000
## (R1 - 1) - SC4 0.5000 0.739 228 0.677 1.0000
## (R1 - 20) - (R2 - 10) 2.1333 0.739 228 2.888 0.3061
## (R1 - 20) - (R2 - 15) 1.3667 0.739 228 1.850 0.9488
## (R1 - 20) - (R3 - 1) -0.4667 0.739 228 -0.632 1.0000
## (R1 - 20) - (R3 - 10) 0.4333 0.739 228 0.587 1.0000
## (R1 - 20) - (R3 - 14) 4.0334 0.739 228 5.459 <0.0001
## (R1 - 20) - (R3 - 17) 1.1333 0.739 228 1.534 0.9928
## (R1 - 20) - (R3 - 19) 3.0667 0.739 228 4.151 0.0071
## (R1 - 20) - (R3 - 4) 4.0000 0.739 228 5.414 <0.0001
## (R1 - 20) - (R3 - 7) -2.4000 0.739 228 -3.248 0.1319
## (R1 - 20) - (R3 - 9) 1.7556 0.739 228 2.376 0.6783
## (R1 - 20) - (R4 - 1) 1.6333 0.739 228 2.211 0.7908
## (R1 - 20) - (R4 - 14) -0.7111 0.739 228 -0.963 1.0000
## (R1 - 20) - (R4 - 6) 3.1333 0.739 228 4.241 0.0050
## (R1 - 20) - (R4 - 8) 5.6667 0.739 228 7.670 <0.0001
## (R1 - 20) - SC1 4.5000 0.739 228 6.091 <0.0001
## (R1 - 20) - SC2 3.7334 0.739 228 5.053 0.0002
## (R1 - 20) - SC3 2.3333 0.739 228 3.158 0.1661
## (R1 - 20) - SC4 2.3667 0.739 228 3.203 0.1483
## (R2 - 10) - (R2 - 15) -0.7667 0.739 228 -1.038 1.0000
## (R2 - 10) - (R3 - 1) -2.6000 0.739 228 -3.519 0.0614
## (R2 - 10) - (R3 - 10) -1.7000 0.739 228 -2.301 0.7318
## (R2 - 10) - (R3 - 14) 1.9000 0.739 228 2.572 0.5301
## (R2 - 10) - (R3 - 17) -1.0000 0.739 228 -1.354 0.9985
## (R2 - 10) - (R3 - 19) 0.9333 0.739 228 1.263 0.9994
## (R2 - 10) - (R3 - 4) 1.8667 0.739 228 2.527 0.5648
## (R2 - 10) - (R3 - 7) -4.5334 0.739 228 -6.136 <0.0001
## (R2 - 10) - (R3 - 9) -0.3778 0.739 228 -0.511 1.0000
## (R2 - 10) - (R4 - 1) -0.5000 0.739 228 -0.677 1.0000
## (R2 - 10) - (R4 - 14) -2.8445 0.739 228 -3.850 0.0211
## (R2 - 10) - (R4 - 6) 1.0000 0.739 228 1.354 0.9985
## (R2 - 10) - (R4 - 8) 3.5334 0.739 228 4.782 0.0005
## (R2 - 10) - SC1 2.3667 0.739 228 3.203 0.1483
## (R2 - 10) - SC2 1.6000 0.739 228 2.166 0.8178
## (R2 - 10) - SC3 0.2000 0.739 228 0.271 1.0000
## (R2 - 10) - SC4 0.2333 0.739 228 0.316 1.0000
## (R2 - 15) - (R3 - 1) -1.8333 0.739 228 -2.481 0.5993
## (R2 - 15) - (R3 - 10) -0.9333 0.739 228 -1.263 0.9994
## (R2 - 15) - (R3 - 14) 2.6667 0.739 228 3.609 0.0465
## (R2 - 15) - (R3 - 17) -0.2333 0.739 228 -0.316 1.0000
## (R2 - 15) - (R3 - 19) 1.7000 0.739 228 2.301 0.7318
## (R2 - 15) - (R3 - 4) 2.6333 0.739 228 3.564 0.0535
## (R2 - 15) - (R3 - 7) -3.7667 0.739 228 -5.098 0.0001
## (R2 - 15) - (R3 - 9) 0.3889 0.739 228 0.526 1.0000
## (R2 - 15) - (R4 - 1) 0.2667 0.739 228 0.361 1.0000
## (R2 - 15) - (R4 - 14) -2.0778 0.739 228 -2.812 0.3547
## (R2 - 15) - (R4 - 6) 1.7667 0.739 228 2.391 0.6673
## (R2 - 15) - (R4 - 8) 4.3000 0.739 228 5.820 <0.0001
## (R2 - 15) - SC1 3.1333 0.739 228 4.241 0.0050
## (R2 - 15) - SC2 2.3667 0.739 228 3.203 0.1483
## (R2 - 15) - SC3 0.9667 0.739 228 1.308 0.9990
## (R2 - 15) - SC4 1.0000 0.739 228 1.354 0.9985
## (R3 - 1) - (R3 - 10) 0.9000 0.739 228 1.218 0.9996
## (R3 - 1) - (R3 - 14) 4.5000 0.739 228 6.091 <0.0001
## (R3 - 1) - (R3 - 17) 1.6000 0.739 228 2.166 0.8178
## (R3 - 1) - (R3 - 19) 3.5334 0.739 228 4.782 0.0005
## (R3 - 1) - (R3 - 4) 4.4667 0.739 228 6.046 <0.0001
## (R3 - 1) - (R3 - 7) -1.9333 0.739 228 -2.617 0.4957
## (R3 - 1) - (R3 - 9) 2.2222 0.739 228 3.008 0.2369
## (R3 - 1) - (R4 - 1) 2.1000 0.739 228 2.842 0.3348
## (R3 - 1) - (R4 - 14) -0.2444 0.739 228 -0.331 1.0000
## (R3 - 1) - (R4 - 6) 3.6000 0.739 228 4.873 0.0004
## (R3 - 1) - (R4 - 8) 6.1334 0.739 228 8.302 <0.0001
## (R3 - 1) - SC1 4.9667 0.739 228 6.723 <0.0001
## (R3 - 1) - SC2 4.2000 0.739 228 5.685 <0.0001
## (R3 - 1) - SC3 2.8000 0.739 228 3.790 0.0258
## (R3 - 1) - SC4 2.8333 0.739 228 3.835 0.0222
## (R3 - 10) - (R3 - 14) 3.6000 0.739 228 4.873 0.0004
## (R3 - 10) - (R3 - 17) 0.7000 0.739 228 0.947 1.0000
## (R3 - 10) - (R3 - 19) 2.6333 0.739 228 3.564 0.0535
## (R3 - 10) - (R3 - 4) 3.5667 0.739 228 4.828 0.0004
## (R3 - 10) - (R3 - 7) -2.8333 0.739 228 -3.835 0.0222
## (R3 - 10) - (R3 - 9) 1.3222 0.739 228 1.790 0.9625
## (R3 - 10) - (R4 - 1) 1.2000 0.739 228 1.624 0.9863
## (R3 - 10) - (R4 - 14) -1.1444 0.739 228 -1.549 0.9919
## (R3 - 10) - (R4 - 6) 2.7000 0.739 228 3.655 0.0403
## (R3 - 10) - (R4 - 8) 5.2334 0.739 228 7.083 <0.0001
## (R3 - 10) - SC1 4.0667 0.739 228 5.504 <0.0001
## (R3 - 10) - SC2 3.3000 0.739 228 4.467 0.0020
## (R3 - 10) - SC3 1.9000 0.739 228 2.572 0.5301
## (R3 - 10) - SC4 1.9333 0.739 228 2.617 0.4957
## (R3 - 14) - (R3 - 17) -2.9000 0.739 228 -3.925 0.0162
## (R3 - 14) - (R3 - 19) -0.9667 0.739 228 -1.308 0.9990
## (R3 - 14) - (R3 - 4) -0.0333 0.739 228 -0.045 1.0000
## (R3 - 14) - (R3 - 7) -6.4334 0.739 228 -8.708 <0.0001
## (R3 - 14) - (R3 - 9) -2.2778 0.739 228 -3.083 0.1993
## (R3 - 14) - (R4 - 1) -2.4000 0.739 228 -3.248 0.1319
## (R3 - 14) - (R4 - 14) -4.7445 0.739 228 -6.422 <0.0001
## (R3 - 14) - (R4 - 6) -0.9000 0.739 228 -1.218 0.9996
## (R3 - 14) - (R4 - 8) 1.6333 0.739 228 2.211 0.7908
## (R3 - 14) - SC1 0.4667 0.739 228 0.632 1.0000
## (R3 - 14) - SC2 -0.3000 0.739 228 -0.406 1.0000
## (R3 - 14) - SC3 -1.7000 0.739 228 -2.301 0.7318
## (R3 - 14) - SC4 -1.6667 0.739 228 -2.256 0.7621
## (R3 - 17) - (R3 - 19) 1.9333 0.739 228 2.617 0.4957
## (R3 - 17) - (R3 - 4) 2.8667 0.739 228 3.880 0.0190
## (R3 - 17) - (R3 - 7) -3.5334 0.739 228 -4.782 0.0005
## (R3 - 17) - (R3 - 9) 0.6222 0.739 228 0.842 1.0000
## (R3 - 17) - (R4 - 1) 0.5000 0.739 228 0.677 1.0000
## (R3 - 17) - (R4 - 14) -1.8445 0.739 228 -2.497 0.5878
## (R3 - 17) - (R4 - 6) 2.0000 0.739 228 2.707 0.4285
## (R3 - 17) - (R4 - 8) 4.5334 0.739 228 6.136 <0.0001
## (R3 - 17) - SC1 3.3667 0.739 228 4.557 0.0014
## (R3 - 17) - SC2 2.6000 0.739 228 3.519 0.0614
## (R3 - 17) - SC3 1.2000 0.739 228 1.624 0.9863
## (R3 - 17) - SC4 1.2333 0.739 228 1.669 0.9815
## (R3 - 19) - (R3 - 4) 0.9333 0.739 228 1.263 0.9994
## (R3 - 19) - (R3 - 7) -5.4667 0.739 228 -7.399 <0.0001
## (R3 - 19) - (R3 - 9) -1.3111 0.739 228 -1.775 0.9655
## (R3 - 19) - (R4 - 1) -1.4333 0.739 228 -1.940 0.9218
## (R3 - 19) - (R4 - 14) -3.7778 0.739 228 -5.113 0.0001
## (R3 - 19) - (R4 - 6) 0.0667 0.739 228 0.090 1.0000
## (R3 - 19) - (R4 - 8) 2.6000 0.739 228 3.519 0.0614
## (R3 - 19) - SC1 1.4333 0.739 228 1.940 0.9218
## (R3 - 19) - SC2 0.6667 0.739 228 0.902 1.0000
## (R3 - 19) - SC3 -0.7333 0.739 228 -0.993 1.0000
## (R3 - 19) - SC4 -0.7000 0.739 228 -0.947 1.0000
## (R3 - 4) - (R3 - 7) -6.4000 0.739 228 -8.663 <0.0001
## (R3 - 4) - (R3 - 9) -2.2445 0.739 228 -3.038 0.2213
## (R3 - 4) - (R4 - 1) -2.3667 0.739 228 -3.203 0.1483
## (R3 - 4) - (R4 - 14) -4.7111 0.739 228 -6.377 <0.0001
## (R3 - 4) - (R4 - 6) -0.8667 0.739 228 -1.173 0.9998
## (R3 - 4) - (R4 - 8) 1.6667 0.739 228 2.256 0.7621
## (R3 - 4) - SC1 0.5000 0.739 228 0.677 1.0000
## (R3 - 4) - SC2 -0.2667 0.739 228 -0.361 1.0000
## (R3 - 4) - SC3 -1.6667 0.739 228 -2.256 0.7621
## (R3 - 4) - SC4 -1.6333 0.739 228 -2.211 0.7908
## (R3 - 7) - (R3 - 9) 4.1556 0.739 228 5.625 <0.0001
## (R3 - 7) - (R4 - 1) 4.0334 0.739 228 5.459 <0.0001
## (R3 - 7) - (R4 - 14) 1.6889 0.739 228 2.286 0.7421
## (R3 - 7) - (R4 - 6) 5.5334 0.739 228 7.490 <0.0001
## (R3 - 7) - (R4 - 8) 8.0667 0.739 228 10.918 <0.0001
## (R3 - 7) - SC1 6.9000 0.739 228 9.339 <0.0001
## (R3 - 7) - SC2 6.1334 0.739 228 8.302 <0.0001
## (R3 - 7) - SC3 4.7334 0.739 228 6.407 <0.0001
## (R3 - 7) - SC4 4.7667 0.739 228 6.452 <0.0001
## (R3 - 9) - (R4 - 1) -0.1222 0.739 228 -0.165 1.0000
## (R3 - 9) - (R4 - 14) -2.4667 0.739 228 -3.339 0.1035
## (R3 - 9) - (R4 - 6) 1.3778 0.739 228 1.865 0.9448
## (R3 - 9) - (R4 - 8) 3.9111 0.739 228 5.294 <0.0001
## (R3 - 9) - SC1 2.7445 0.739 228 3.715 0.0332
## (R3 - 9) - SC2 1.9778 0.739 228 2.677 0.4506
## (R3 - 9) - SC3 0.5778 0.739 228 0.782 1.0000
## (R3 - 9) - SC4 0.6111 0.739 228 0.827 1.0000
## (R4 - 1) - (R4 - 14) -2.3445 0.739 228 -3.173 0.1600
## (R4 - 1) - (R4 - 6) 1.5000 0.739 228 2.030 0.8866
## (R4 - 1) - (R4 - 8) 4.0334 0.739 228 5.459 <0.0001
## (R4 - 1) - SC1 2.8667 0.739 228 3.880 0.0190
## (R4 - 1) - SC2 2.1000 0.739 228 2.842 0.3348
## (R4 - 1) - SC3 0.7000 0.739 228 0.947 1.0000
## (R4 - 1) - SC4 0.7333 0.739 228 0.993 1.0000
## (R4 - 14) - (R4 - 6) 3.8445 0.739 228 5.204 <0.0001
## (R4 - 14) - (R4 - 8) 6.3778 0.739 228 8.632 <0.0001
## (R4 - 14) - SC1 5.2111 0.739 228 7.053 <0.0001
## (R4 - 14) - SC2 4.4445 0.739 228 6.016 <0.0001
## (R4 - 14) - SC3 3.0445 0.739 228 4.121 0.0079
## (R4 - 14) - SC4 3.0778 0.739 228 4.166 0.0067
## (R4 - 6) - (R4 - 8) 2.5333 0.739 228 3.429 0.0802
## (R4 - 6) - SC1 1.3667 0.739 228 1.850 0.9488
## (R4 - 6) - SC2 0.6000 0.739 228 0.812 1.0000
## (R4 - 6) - SC3 -0.8000 0.739 228 -1.083 0.9999
## (R4 - 6) - SC4 -0.7667 0.739 228 -1.038 1.0000
## (R4 - 8) - SC1 -1.1667 0.739 228 -1.579 0.9900
## (R4 - 8) - SC2 -1.9333 0.739 228 -2.617 0.4957
## (R4 - 8) - SC3 -3.3333 0.739 228 -4.512 0.0017
## (R4 - 8) - SC4 -3.3000 0.739 228 -4.467 0.0020
## SC1 - SC2 -0.7667 0.739 228 -1.038 1.0000
## SC1 - SC3 -2.1667 0.739 228 -2.933 0.2788
## SC1 - SC4 -2.1333 0.739 228 -2.888 0.3061
## SC2 - SC3 -1.4000 0.739 228 -1.895 0.9363
## SC2 - SC4 -1.3667 0.739 228 -1.850 0.9488
## SC3 - SC4 0.0333 0.739 228 0.045 1.0000
##
## Environment = E4:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) 6.4667 0.739 228 8.753 <0.0001
## (R1 - 1) - (R2 - 10) -7.3000 0.739 228 -9.881 <0.0001
## (R1 - 1) - (R2 - 15) 1.2667 0.739 228 1.714 0.9756
## (R1 - 1) - (R3 - 1) 1.0333 0.739 228 1.399 0.9977
## (R1 - 1) - (R3 - 10) -5.3667 0.739 228 -7.264 <0.0001
## (R1 - 1) - (R3 - 14) 5.3000 0.739 228 7.174 <0.0001
## (R1 - 1) - (R3 - 17) -0.0333 0.739 228 -0.045 1.0000
## (R1 - 1) - (R3 - 19) 2.6333 0.739 228 3.564 0.0535
## (R1 - 1) - (R3 - 4) 3.9000 0.739 228 5.279 <0.0001
## (R1 - 1) - (R3 - 7) -2.4333 0.739 228 -3.294 0.1170
## (R1 - 1) - (R3 - 9) 0.6167 0.739 228 0.835 1.0000
## (R1 - 1) - (R4 - 1) -5.9667 0.739 228 -8.076 <0.0001
## (R1 - 1) - (R4 - 14) 0.6000 0.739 228 0.812 1.0000
## (R1 - 1) - (R4 - 6) 4.9667 0.739 228 6.722 <0.0001
## (R1 - 1) - (R4 - 8) 0.3167 0.739 228 0.429 1.0000
## (R1 - 1) - SC1 -3.0333 0.739 228 -4.106 0.0084
## (R1 - 1) - SC2 -0.3333 0.739 228 -0.451 1.0000
## (R1 - 1) - SC3 2.3333 0.739 228 3.158 0.1661
## (R1 - 1) - SC4 4.2333 0.739 228 5.730 <0.0001
## (R1 - 20) - (R2 - 10) -13.7667 0.739 228 -18.633 <0.0001
## (R1 - 20) - (R2 - 15) -5.2000 0.739 228 -7.038 <0.0001
## (R1 - 20) - (R3 - 1) -5.4333 0.739 228 -7.354 <0.0001
## (R1 - 20) - (R3 - 10) -11.8333 0.739 228 -16.017 <0.0001
## (R1 - 20) - (R3 - 14) -1.1667 0.739 228 -1.579 0.9900
## (R1 - 20) - (R3 - 17) -6.5000 0.739 228 -8.798 <0.0001
## (R1 - 20) - (R3 - 19) -3.8333 0.739 228 -5.188 <0.0001
## (R1 - 20) - (R3 - 4) -2.5667 0.739 228 -3.474 0.0703
## (R1 - 20) - (R3 - 7) -8.9000 0.739 228 -12.046 <0.0001
## (R1 - 20) - (R3 - 9) -5.8500 0.739 228 -7.918 <0.0001
## (R1 - 20) - (R4 - 1) -12.4333 0.739 228 -16.829 <0.0001
## (R1 - 20) - (R4 - 14) -5.8667 0.739 228 -7.941 <0.0001
## (R1 - 20) - (R4 - 6) -1.5000 0.739 228 -2.030 0.8866
## (R1 - 20) - (R4 - 8) -6.1500 0.739 228 -8.324 <0.0001
## (R1 - 20) - SC1 -9.5000 0.739 228 -12.858 <0.0001
## (R1 - 20) - SC2 -6.8000 0.739 228 -9.204 <0.0001
## (R1 - 20) - SC3 -4.1333 0.739 228 -5.595 <0.0001
## (R1 - 20) - SC4 -2.2333 0.739 228 -3.023 0.2290
## (R2 - 10) - (R2 - 15) 8.5667 0.739 228 11.595 <0.0001
## (R2 - 10) - (R3 - 1) 8.3333 0.739 228 11.279 <0.0001
## (R2 - 10) - (R3 - 10) 1.9333 0.739 228 2.617 0.4957
## (R2 - 10) - (R3 - 14) 12.6000 0.739 228 17.054 <0.0001
## (R2 - 10) - (R3 - 17) 7.2667 0.739 228 9.836 <0.0001
## (R2 - 10) - (R3 - 19) 9.9333 0.739 228 13.445 <0.0001
## (R2 - 10) - (R3 - 4) 11.2000 0.739 228 15.159 <0.0001
## (R2 - 10) - (R3 - 7) 4.8667 0.739 228 6.587 <0.0001
## (R2 - 10) - (R3 - 9) 7.9167 0.739 228 10.715 <0.0001
## (R2 - 10) - (R4 - 1) 1.3333 0.739 228 1.805 0.9594
## (R2 - 10) - (R4 - 14) 7.9000 0.739 228 10.693 <0.0001
## (R2 - 10) - (R4 - 6) 12.2667 0.739 228 16.603 <0.0001
## (R2 - 10) - (R4 - 8) 7.6167 0.739 228 10.309 <0.0001
## (R2 - 10) - SC1 4.2667 0.739 228 5.775 <0.0001
## (R2 - 10) - SC2 6.9667 0.739 228 9.430 <0.0001
## (R2 - 10) - SC3 9.6333 0.739 228 13.039 <0.0001
## (R2 - 10) - SC4 11.5333 0.739 228 15.611 <0.0001
## (R2 - 15) - (R3 - 1) -0.2333 0.739 228 -0.316 1.0000
## (R2 - 15) - (R3 - 10) -6.6333 0.739 228 -8.978 <0.0001
## (R2 - 15) - (R3 - 14) 4.0333 0.739 228 5.459 <0.0001
## (R2 - 15) - (R3 - 17) -1.3000 0.739 228 -1.760 0.9683
## (R2 - 15) - (R3 - 19) 1.3667 0.739 228 1.850 0.9488
## (R2 - 15) - (R3 - 4) 2.6333 0.739 228 3.564 0.0535
## (R2 - 15) - (R3 - 7) -3.7000 0.739 228 -5.008 0.0002
## (R2 - 15) - (R3 - 9) -0.6500 0.739 228 -0.880 1.0000
## (R2 - 15) - (R4 - 1) -7.2333 0.739 228 -9.790 <0.0001
## (R2 - 15) - (R4 - 14) -0.6667 0.739 228 -0.902 1.0000
## (R2 - 15) - (R4 - 6) 3.7000 0.739 228 5.008 0.0002
## (R2 - 15) - (R4 - 8) -0.9500 0.739 228 -1.286 0.9992
## (R2 - 15) - SC1 -4.3000 0.739 228 -5.820 <0.0001
## (R2 - 15) - SC2 -1.6000 0.739 228 -2.166 0.8178
## (R2 - 15) - SC3 1.0667 0.739 228 1.444 0.9965
## (R2 - 15) - SC4 2.9667 0.739 228 4.015 0.0117
## (R3 - 1) - (R3 - 10) -6.4000 0.739 228 -8.663 <0.0001
## (R3 - 1) - (R3 - 14) 4.2667 0.739 228 5.775 <0.0001
## (R3 - 1) - (R3 - 17) -1.0667 0.739 228 -1.444 0.9965
## (R3 - 1) - (R3 - 19) 1.6000 0.739 228 2.166 0.8178
## (R3 - 1) - (R3 - 4) 2.8667 0.739 228 3.880 0.0190
## (R3 - 1) - (R3 - 7) -3.4667 0.739 228 -4.692 0.0008
## (R3 - 1) - (R3 - 9) -0.4167 0.739 228 -0.564 1.0000
## (R3 - 1) - (R4 - 1) -7.0000 0.739 228 -9.475 <0.0001
## (R3 - 1) - (R4 - 14) -0.4333 0.739 228 -0.587 1.0000
## (R3 - 1) - (R4 - 6) 3.9333 0.739 228 5.324 <0.0001
## (R3 - 1) - (R4 - 8) -0.7167 0.739 228 -0.970 1.0000
## (R3 - 1) - SC1 -4.0667 0.739 228 -5.504 <0.0001
## (R3 - 1) - SC2 -1.3667 0.739 228 -1.850 0.9488
## (R3 - 1) - SC3 1.3000 0.739 228 1.760 0.9683
## (R3 - 1) - SC4 3.2000 0.739 228 4.331 0.0035
## (R3 - 10) - (R3 - 14) 10.6667 0.739 228 14.438 <0.0001
## (R3 - 10) - (R3 - 17) 5.3333 0.739 228 7.219 <0.0001
## (R3 - 10) - (R3 - 19) 8.0000 0.739 228 10.828 <0.0001
## (R3 - 10) - (R3 - 4) 9.2667 0.739 228 12.543 <0.0001
## (R3 - 10) - (R3 - 7) 2.9333 0.739 228 3.970 0.0138
## (R3 - 10) - (R3 - 9) 5.9833 0.739 228 8.099 <0.0001
## (R3 - 10) - (R4 - 1) -0.6000 0.739 228 -0.812 1.0000
## (R3 - 10) - (R4 - 14) 5.9667 0.739 228 8.076 <0.0001
## (R3 - 10) - (R4 - 6) 10.3333 0.739 228 13.986 <0.0001
## (R3 - 10) - (R4 - 8) 5.6833 0.739 228 7.692 <0.0001
## (R3 - 10) - SC1 2.3333 0.739 228 3.158 0.1661
## (R3 - 10) - SC2 5.0333 0.739 228 6.813 <0.0001
## (R3 - 10) - SC3 7.7000 0.739 228 10.422 <0.0001
## (R3 - 10) - SC4 9.6000 0.739 228 12.994 <0.0001
## (R3 - 14) - (R3 - 17) -5.3333 0.739 228 -7.219 <0.0001
## (R3 - 14) - (R3 - 19) -2.6667 0.739 228 -3.609 0.0465
## (R3 - 14) - (R3 - 4) -1.4000 0.739 228 -1.895 0.9363
## (R3 - 14) - (R3 - 7) -7.7333 0.739 228 -10.467 <0.0001
## (R3 - 14) - (R3 - 9) -4.6833 0.739 228 -6.339 <0.0001
## (R3 - 14) - (R4 - 1) -11.2667 0.739 228 -15.250 <0.0001
## (R3 - 14) - (R4 - 14) -4.7000 0.739 228 -6.362 <0.0001
## (R3 - 14) - (R4 - 6) -0.3333 0.739 228 -0.451 1.0000
## (R3 - 14) - (R4 - 8) -4.9833 0.739 228 -6.745 <0.0001
## (R3 - 14) - SC1 -8.3333 0.739 228 -11.279 <0.0001
## (R3 - 14) - SC2 -5.6333 0.739 228 -7.625 <0.0001
## (R3 - 14) - SC3 -2.9667 0.739 228 -4.015 0.0117
## (R3 - 14) - SC4 -1.0667 0.739 228 -1.444 0.9965
## (R3 - 17) - (R3 - 19) 2.6667 0.739 228 3.609 0.0465
## (R3 - 17) - (R3 - 4) 3.9333 0.739 228 5.324 <0.0001
## (R3 - 17) - (R3 - 7) -2.4000 0.739 228 -3.248 0.1319
## (R3 - 17) - (R3 - 9) 0.6500 0.739 228 0.880 1.0000
## (R3 - 17) - (R4 - 1) -5.9333 0.739 228 -8.031 <0.0001
## (R3 - 17) - (R4 - 14) 0.6333 0.739 228 0.857 1.0000
## (R3 - 17) - (R4 - 6) 5.0000 0.739 228 6.768 <0.0001
## (R3 - 17) - (R4 - 8) 0.3500 0.739 228 0.474 1.0000
## (R3 - 17) - SC1 -3.0000 0.739 228 -4.061 0.0099
## (R3 - 17) - SC2 -0.3000 0.739 228 -0.406 1.0000
## (R3 - 17) - SC3 2.3667 0.739 228 3.203 0.1483
## (R3 - 17) - SC4 4.2667 0.739 228 5.775 <0.0001
## (R3 - 19) - (R3 - 4) 1.2667 0.739 228 1.714 0.9756
## (R3 - 19) - (R3 - 7) -5.0667 0.739 228 -6.858 <0.0001
## (R3 - 19) - (R3 - 9) -2.0167 0.739 228 -2.730 0.4122
## (R3 - 19) - (R4 - 1) -8.6000 0.739 228 -11.640 <0.0001
## (R3 - 19) - (R4 - 14) -2.0333 0.739 228 -2.752 0.3961
## (R3 - 19) - (R4 - 6) 2.3333 0.739 228 3.158 0.1661
## (R3 - 19) - (R4 - 8) -2.3167 0.739 228 -3.136 0.1756
## (R3 - 19) - SC1 -5.6667 0.739 228 -7.670 <0.0001
## (R3 - 19) - SC2 -2.9667 0.739 228 -4.015 0.0117
## (R3 - 19) - SC3 -0.3000 0.739 228 -0.406 1.0000
## (R3 - 19) - SC4 1.6000 0.739 228 2.166 0.8178
## (R3 - 4) - (R3 - 7) -6.3333 0.739 228 -8.572 <0.0001
## (R3 - 4) - (R3 - 9) -3.2833 0.739 228 -4.444 0.0022
## (R3 - 4) - (R4 - 1) -9.8667 0.739 228 -13.355 <0.0001
## (R3 - 4) - (R4 - 14) -3.3000 0.739 228 -4.467 0.0020
## (R3 - 4) - (R4 - 6) 1.0667 0.739 228 1.444 0.9965
## (R3 - 4) - (R4 - 8) -3.5833 0.739 228 -4.850 0.0004
## (R3 - 4) - SC1 -6.9333 0.739 228 -9.384 <0.0001
## (R3 - 4) - SC2 -4.2333 0.739 228 -5.730 <0.0001
## (R3 - 4) - SC3 -1.5667 0.739 228 -2.121 0.8428
## (R3 - 4) - SC4 0.3333 0.739 228 0.451 1.0000
## (R3 - 7) - (R3 - 9) 3.0500 0.739 228 4.128 0.0077
## (R3 - 7) - (R4 - 1) -3.5333 0.739 228 -4.782 0.0005
## (R3 - 7) - (R4 - 14) 3.0333 0.739 228 4.106 0.0084
## (R3 - 7) - (R4 - 6) 7.4000 0.739 228 10.016 <0.0001
## (R3 - 7) - (R4 - 8) 2.7500 0.739 228 3.722 0.0324
## (R3 - 7) - SC1 -0.6000 0.739 228 -0.812 1.0000
## (R3 - 7) - SC2 2.1000 0.739 228 2.842 0.3348
## (R3 - 7) - SC3 4.7667 0.739 228 6.452 <0.0001
## (R3 - 7) - SC4 6.6667 0.739 228 9.023 <0.0001
## (R3 - 9) - (R4 - 1) -6.5833 0.739 228 -8.911 <0.0001
## (R3 - 9) - (R4 - 14) -0.0167 0.739 228 -0.023 1.0000
## (R3 - 9) - (R4 - 6) 4.3500 0.739 228 5.888 <0.0001
## (R3 - 9) - (R4 - 8) -0.3000 0.739 228 -0.406 1.0000
## (R3 - 9) - SC1 -3.6500 0.739 228 -4.940 0.0003
## (R3 - 9) - SC2 -0.9500 0.739 228 -1.286 0.9992
## (R3 - 9) - SC3 1.7167 0.739 228 2.324 0.7161
## (R3 - 9) - SC4 3.6167 0.739 228 4.895 0.0003
## (R4 - 1) - (R4 - 14) 6.5667 0.739 228 8.888 <0.0001
## (R4 - 1) - (R4 - 6) 10.9333 0.739 228 14.798 <0.0001
## (R4 - 1) - (R4 - 8) 6.2833 0.739 228 8.505 <0.0001
## (R4 - 1) - SC1 2.9333 0.739 228 3.970 0.0138
## (R4 - 1) - SC2 5.6333 0.739 228 7.625 <0.0001
## (R4 - 1) - SC3 8.3000 0.739 228 11.234 <0.0001
## (R4 - 1) - SC4 10.2000 0.739 228 13.806 <0.0001
## (R4 - 14) - (R4 - 6) 4.3667 0.739 228 5.910 <0.0001
## (R4 - 14) - (R4 - 8) -0.2833 0.739 228 -0.383 1.0000
## (R4 - 14) - SC1 -3.6333 0.739 228 -4.918 0.0003
## (R4 - 14) - SC2 -0.9333 0.739 228 -1.263 0.9994
## (R4 - 14) - SC3 1.7333 0.739 228 2.346 0.7001
## (R4 - 14) - SC4 3.6333 0.739 228 4.918 0.0003
## (R4 - 6) - (R4 - 8) -4.6500 0.739 228 -6.294 <0.0001
## (R4 - 6) - SC1 -8.0000 0.739 228 -10.828 <0.0001
## (R4 - 6) - SC2 -5.3000 0.739 228 -7.174 <0.0001
## (R4 - 6) - SC3 -2.6333 0.739 228 -3.564 0.0535
## (R4 - 6) - SC4 -0.7333 0.739 228 -0.993 1.0000
## (R4 - 8) - SC1 -3.3500 0.739 228 -4.534 0.0015
## (R4 - 8) - SC2 -0.6500 0.739 228 -0.880 1.0000
## (R4 - 8) - SC3 2.0167 0.739 228 2.730 0.4122
## (R4 - 8) - SC4 3.9167 0.739 228 5.301 <0.0001
## SC1 - SC2 2.7000 0.739 228 3.655 0.0403
## SC1 - SC3 5.3667 0.739 228 7.264 <0.0001
## SC1 - SC4 7.2667 0.739 228 9.836 <0.0001
## SC2 - SC3 2.6667 0.739 228 3.609 0.0465
## SC2 - SC4 4.5667 0.739 228 6.181 <0.0001
## SC3 - SC4 1.9000 0.739 228 2.572 0.5301
##
## Environment = E5:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) 2.4000 0.739 228 3.248 0.1319
## (R1 - 1) - (R2 - 10) 4.3334 0.739 228 5.865 <0.0001
## (R1 - 1) - (R2 - 15) 1.4000 0.739 228 1.895 0.9363
## (R1 - 1) - (R3 - 1) 6.7000 0.739 228 9.069 <0.0001
## (R1 - 1) - (R3 - 10) 3.5667 0.739 228 4.828 0.0004
## (R1 - 1) - (R3 - 14) 4.4667 0.739 228 6.046 <0.0001
## (R1 - 1) - (R3 - 17) 5.9667 0.739 228 8.076 <0.0001
## (R1 - 1) - (R3 - 19) 5.7000 0.739 228 7.715 <0.0001
## (R1 - 1) - (R3 - 4) 2.5000 0.739 228 3.384 0.0912
## (R1 - 1) - (R3 - 7) 3.8667 0.739 228 5.234 <0.0001
## (R1 - 1) - (R3 - 9) 4.3667 0.739 228 5.910 <0.0001
## (R1 - 1) - (R4 - 1) 6.9000 0.739 228 9.339 <0.0001
## (R1 - 1) - (R4 - 14) 6.4000 0.739 228 8.663 <0.0001
## (R1 - 1) - (R4 - 6) 7.0223 0.739 228 9.505 <0.0001
## (R1 - 1) - (R4 - 8) 7.2334 0.739 228 9.791 <0.0001
## (R1 - 1) - SC1 4.5334 0.739 228 6.136 <0.0001
## (R1 - 1) - SC2 4.0445 0.739 228 5.474 <0.0001
## (R1 - 1) - SC3 3.6889 0.739 228 4.993 0.0002
## (R1 - 1) - SC4 3.5334 0.739 228 4.782 0.0005
## (R1 - 20) - (R2 - 10) 1.9333 0.739 228 2.617 0.4957
## (R1 - 20) - (R2 - 15) -1.0000 0.739 228 -1.354 0.9985
## (R1 - 20) - (R3 - 1) 4.3000 0.739 228 5.820 <0.0001
## (R1 - 20) - (R3 - 10) 1.1667 0.739 228 1.579 0.9900
## (R1 - 20) - (R3 - 14) 2.0667 0.739 228 2.797 0.3648
## (R1 - 20) - (R3 - 17) 3.5667 0.739 228 4.828 0.0004
## (R1 - 20) - (R3 - 19) 3.3000 0.739 228 4.467 0.0020
## (R1 - 20) - (R3 - 4) 0.1000 0.739 228 0.135 1.0000
## (R1 - 20) - (R3 - 7) 1.4667 0.739 228 1.985 0.9053
## (R1 - 20) - (R3 - 9) 1.9667 0.739 228 2.662 0.4617
## (R1 - 20) - (R4 - 1) 4.5000 0.739 228 6.091 <0.0001
## (R1 - 20) - (R4 - 14) 4.0000 0.739 228 5.414 <0.0001
## (R1 - 20) - (R4 - 6) 4.6222 0.739 228 6.256 <0.0001
## (R1 - 20) - (R4 - 8) 4.8334 0.739 228 6.542 <0.0001
## (R1 - 20) - SC1 2.1333 0.739 228 2.888 0.3061
## (R1 - 20) - SC2 1.6445 0.739 228 2.226 0.7814
## (R1 - 20) - SC3 1.2889 0.739 228 1.745 0.9709
## (R1 - 20) - SC4 1.1333 0.739 228 1.534 0.9928
## (R2 - 10) - (R2 - 15) -2.9333 0.739 228 -3.970 0.0138
## (R2 - 10) - (R3 - 1) 2.3667 0.739 228 3.203 0.1483
## (R2 - 10) - (R3 - 10) -0.7667 0.739 228 -1.038 1.0000
## (R2 - 10) - (R3 - 14) 0.1333 0.739 228 0.180 1.0000
## (R2 - 10) - (R3 - 17) 1.6333 0.739 228 2.211 0.7908
## (R2 - 10) - (R3 - 19) 1.3667 0.739 228 1.850 0.9488
## (R2 - 10) - (R3 - 4) -1.8333 0.739 228 -2.481 0.5993
## (R2 - 10) - (R3 - 7) -0.4667 0.739 228 -0.632 1.0000
## (R2 - 10) - (R3 - 9) 0.0333 0.739 228 0.045 1.0000
## (R2 - 10) - (R4 - 1) 2.5667 0.739 228 3.474 0.0703
## (R2 - 10) - (R4 - 14) 2.0667 0.739 228 2.797 0.3648
## (R2 - 10) - (R4 - 6) 2.6889 0.739 228 3.639 0.0423
## (R2 - 10) - (R4 - 8) 2.9000 0.739 228 3.925 0.0162
## (R2 - 10) - SC1 0.2000 0.739 228 0.271 1.0000
## (R2 - 10) - SC2 -0.2889 0.739 228 -0.391 1.0000
## (R2 - 10) - SC3 -0.6444 0.739 228 -0.872 1.0000
## (R2 - 10) - SC4 -0.8000 0.739 228 -1.083 0.9999
## (R2 - 15) - (R3 - 1) 5.3000 0.739 228 7.174 <0.0001
## (R2 - 15) - (R3 - 10) 2.1667 0.739 228 2.933 0.2788
## (R2 - 15) - (R3 - 14) 3.0667 0.739 228 4.151 0.0071
## (R2 - 15) - (R3 - 17) 4.5667 0.739 228 6.181 <0.0001
## (R2 - 15) - (R3 - 19) 4.3000 0.739 228 5.820 <0.0001
## (R2 - 15) - (R3 - 4) 1.1000 0.739 228 1.489 0.9950
## (R2 - 15) - (R3 - 7) 2.4667 0.739 228 3.339 0.1035
## (R2 - 15) - (R3 - 9) 2.9667 0.739 228 4.015 0.0117
## (R2 - 15) - (R4 - 1) 5.5000 0.739 228 7.444 <0.0001
## (R2 - 15) - (R4 - 14) 5.0000 0.739 228 6.768 <0.0001
## (R2 - 15) - (R4 - 6) 5.6223 0.739 228 7.610 <0.0001
## (R2 - 15) - (R4 - 8) 5.8334 0.739 228 7.896 <0.0001
## (R2 - 15) - SC1 3.1333 0.739 228 4.241 0.0050
## (R2 - 15) - SC2 2.6445 0.739 228 3.579 0.0511
## (R2 - 15) - SC3 2.2889 0.739 228 3.098 0.1923
## (R2 - 15) - SC4 2.1333 0.739 228 2.888 0.3061
## (R3 - 1) - (R3 - 10) -3.1333 0.739 228 -4.241 0.0050
## (R3 - 1) - (R3 - 14) -2.2333 0.739 228 -3.023 0.2290
## (R3 - 1) - (R3 - 17) -0.7333 0.739 228 -0.993 1.0000
## (R3 - 1) - (R3 - 19) -1.0000 0.739 228 -1.354 0.9985
## (R3 - 1) - (R3 - 4) -4.2000 0.739 228 -5.685 <0.0001
## (R3 - 1) - (R3 - 7) -2.8333 0.739 228 -3.835 0.0222
## (R3 - 1) - (R3 - 9) -2.3333 0.739 228 -3.158 0.1661
## (R3 - 1) - (R4 - 1) 0.2000 0.739 228 0.271 1.0000
## (R3 - 1) - (R4 - 14) -0.3000 0.739 228 -0.406 1.0000
## (R3 - 1) - (R4 - 6) 0.3222 0.739 228 0.436 1.0000
## (R3 - 1) - (R4 - 8) 0.5333 0.739 228 0.722 1.0000
## (R3 - 1) - SC1 -2.1667 0.739 228 -2.933 0.2788
## (R3 - 1) - SC2 -2.6556 0.739 228 -3.594 0.0488
## (R3 - 1) - SC3 -3.0111 0.739 228 -4.076 0.0094
## (R3 - 1) - SC4 -3.1667 0.739 228 -4.286 0.0042
## (R3 - 10) - (R3 - 14) 0.9000 0.739 228 1.218 0.9996
## (R3 - 10) - (R3 - 17) 2.4000 0.739 228 3.248 0.1319
## (R3 - 10) - (R3 - 19) 2.1333 0.739 228 2.888 0.3061
## (R3 - 10) - (R3 - 4) -1.0667 0.739 228 -1.444 0.9965
## (R3 - 10) - (R3 - 7) 0.3000 0.739 228 0.406 1.0000
## (R3 - 10) - (R3 - 9) 0.8000 0.739 228 1.083 0.9999
## (R3 - 10) - (R4 - 1) 3.3333 0.739 228 4.512 0.0017
## (R3 - 10) - (R4 - 14) 2.8333 0.739 228 3.835 0.0222
## (R3 - 10) - (R4 - 6) 3.4556 0.739 228 4.677 0.0008
## (R3 - 10) - (R4 - 8) 3.6667 0.739 228 4.963 0.0002
## (R3 - 10) - SC1 0.9667 0.739 228 1.308 0.9990
## (R3 - 10) - SC2 0.4778 0.739 228 0.647 1.0000
## (R3 - 10) - SC3 0.1222 0.739 228 0.165 1.0000
## (R3 - 10) - SC4 -0.0333 0.739 228 -0.045 1.0000
## (R3 - 14) - (R3 - 17) 1.5000 0.739 228 2.030 0.8866
## (R3 - 14) - (R3 - 19) 1.2333 0.739 228 1.669 0.9815
## (R3 - 14) - (R3 - 4) -1.9667 0.739 228 -2.662 0.4617
## (R3 - 14) - (R3 - 7) -0.6000 0.739 228 -0.812 1.0000
## (R3 - 14) - (R3 - 9) -0.1000 0.739 228 -0.135 1.0000
## (R3 - 14) - (R4 - 1) 2.4333 0.739 228 3.294 0.1170
## (R3 - 14) - (R4 - 14) 1.9333 0.739 228 2.617 0.4957
## (R3 - 14) - (R4 - 6) 2.5556 0.739 228 3.459 0.0734
## (R3 - 14) - (R4 - 8) 2.7667 0.739 228 3.745 0.0300
## (R3 - 14) - SC1 0.0667 0.739 228 0.090 1.0000
## (R3 - 14) - SC2 -0.4222 0.739 228 -0.571 1.0000
## (R3 - 14) - SC3 -0.7778 0.739 228 -1.053 1.0000
## (R3 - 14) - SC4 -0.9333 0.739 228 -1.263 0.9994
## (R3 - 17) - (R3 - 19) -0.2667 0.739 228 -0.361 1.0000
## (R3 - 17) - (R3 - 4) -3.4667 0.739 228 -4.692 0.0008
## (R3 - 17) - (R3 - 7) -2.1000 0.739 228 -2.842 0.3348
## (R3 - 17) - (R3 - 9) -1.6000 0.739 228 -2.166 0.8178
## (R3 - 17) - (R4 - 1) 0.9333 0.739 228 1.263 0.9994
## (R3 - 17) - (R4 - 14) 0.4333 0.739 228 0.587 1.0000
## (R3 - 17) - (R4 - 6) 1.0556 0.739 228 1.429 0.9970
## (R3 - 17) - (R4 - 8) 1.2667 0.739 228 1.714 0.9756
## (R3 - 17) - SC1 -1.4333 0.739 228 -1.940 0.9218
## (R3 - 17) - SC2 -1.9222 0.739 228 -2.602 0.5071
## (R3 - 17) - SC3 -2.2778 0.739 228 -3.083 0.1993
## (R3 - 17) - SC4 -2.4333 0.739 228 -3.294 0.1170
## (R3 - 19) - (R3 - 4) -3.2000 0.739 228 -4.331 0.0035
## (R3 - 19) - (R3 - 7) -1.8333 0.739 228 -2.481 0.5993
## (R3 - 19) - (R3 - 9) -1.3333 0.739 228 -1.805 0.9594
## (R3 - 19) - (R4 - 1) 1.2000 0.739 228 1.624 0.9863
## (R3 - 19) - (R4 - 14) 0.7000 0.739 228 0.947 1.0000
## (R3 - 19) - (R4 - 6) 1.3222 0.739 228 1.790 0.9625
## (R3 - 19) - (R4 - 8) 1.5333 0.739 228 2.075 0.8658
## (R3 - 19) - SC1 -1.1667 0.739 228 -1.579 0.9900
## (R3 - 19) - SC2 -1.6556 0.739 228 -2.241 0.7719
## (R3 - 19) - SC3 -2.0111 0.739 228 -2.722 0.4176
## (R3 - 19) - SC4 -2.1667 0.739 228 -2.933 0.2788
## (R3 - 4) - (R3 - 7) 1.3667 0.739 228 1.850 0.9488
## (R3 - 4) - (R3 - 9) 1.8667 0.739 228 2.527 0.5648
## (R3 - 4) - (R4 - 1) 4.4000 0.739 228 5.956 <0.0001
## (R3 - 4) - (R4 - 14) 3.9000 0.739 228 5.279 <0.0001
## (R3 - 4) - (R4 - 6) 4.5222 0.739 228 6.121 <0.0001
## (R3 - 4) - (R4 - 8) 4.7334 0.739 228 6.407 <0.0001
## (R3 - 4) - SC1 2.0333 0.739 228 2.752 0.3961
## (R3 - 4) - SC2 1.5445 0.739 228 2.090 0.8583
## (R3 - 4) - SC3 1.1889 0.739 228 1.609 0.9876
## (R3 - 4) - SC4 1.0333 0.739 228 1.399 0.9977
## (R3 - 7) - (R3 - 9) 0.5000 0.739 228 0.677 1.0000
## (R3 - 7) - (R4 - 1) 3.0333 0.739 228 4.106 0.0084
## (R3 - 7) - (R4 - 14) 2.5333 0.739 228 3.429 0.0802
## (R3 - 7) - (R4 - 6) 3.1556 0.739 228 4.271 0.0045
## (R3 - 7) - (R4 - 8) 3.3667 0.739 228 4.557 0.0014
## (R3 - 7) - SC1 0.6667 0.739 228 0.902 1.0000
## (R3 - 7) - SC2 0.1778 0.739 228 0.241 1.0000
## (R3 - 7) - SC3 -0.1778 0.739 228 -0.241 1.0000
## (R3 - 7) - SC4 -0.3333 0.739 228 -0.451 1.0000
## (R3 - 9) - (R4 - 1) 2.5333 0.739 228 3.429 0.0802
## (R3 - 9) - (R4 - 14) 2.0333 0.739 228 2.752 0.3961
## (R3 - 9) - (R4 - 6) 2.6556 0.739 228 3.594 0.0488
## (R3 - 9) - (R4 - 8) 2.8667 0.739 228 3.880 0.0190
## (R3 - 9) - SC1 0.1667 0.739 228 0.226 1.0000
## (R3 - 9) - SC2 -0.3222 0.739 228 -0.436 1.0000
## (R3 - 9) - SC3 -0.6778 0.739 228 -0.917 1.0000
## (R3 - 9) - SC4 -0.8333 0.739 228 -1.128 0.9999
## (R4 - 1) - (R4 - 14) -0.5000 0.739 228 -0.677 1.0000
## (R4 - 1) - (R4 - 6) 0.1222 0.739 228 0.165 1.0000
## (R4 - 1) - (R4 - 8) 0.3333 0.739 228 0.451 1.0000
## (R4 - 1) - SC1 -2.3667 0.739 228 -3.203 0.1483
## (R4 - 1) - SC2 -2.8556 0.739 228 -3.865 0.0200
## (R4 - 1) - SC3 -3.2111 0.739 228 -4.346 0.0033
## (R4 - 1) - SC4 -3.3667 0.739 228 -4.557 0.0014
## (R4 - 14) - (R4 - 6) 0.6222 0.739 228 0.842 1.0000
## (R4 - 14) - (R4 - 8) 0.8333 0.739 228 1.128 0.9999
## (R4 - 14) - SC1 -1.8667 0.739 228 -2.527 0.5648
## (R4 - 14) - SC2 -2.3556 0.739 228 -3.188 0.1540
## (R4 - 14) - SC3 -2.7111 0.739 228 -3.670 0.0384
## (R4 - 14) - SC4 -2.8667 0.739 228 -3.880 0.0190
## (R4 - 6) - (R4 - 8) 0.2111 0.739 228 0.286 1.0000
## (R4 - 6) - SC1 -2.4889 0.739 228 -3.369 0.0952
## (R4 - 6) - SC2 -2.9778 0.739 228 -4.030 0.0111
## (R4 - 6) - SC3 -3.3333 0.739 228 -4.512 0.0017
## (R4 - 6) - SC4 -3.4889 0.739 228 -4.722 0.0007
## (R4 - 8) - SC1 -2.7000 0.739 228 -3.655 0.0403
## (R4 - 8) - SC2 -3.1889 0.739 228 -4.316 0.0037
## (R4 - 8) - SC3 -3.5445 0.739 228 -4.797 0.0005
## (R4 - 8) - SC4 -3.7000 0.739 228 -5.008 0.0002
## SC1 - SC2 -0.4889 0.739 228 -0.662 1.0000
## SC1 - SC3 -0.8444 0.739 228 -1.143 0.9999
## SC1 - SC4 -1.0000 0.739 228 -1.354 0.9985
## SC2 - SC3 -0.3556 0.739 228 -0.481 1.0000
## SC2 - SC4 -0.5111 0.739 228 -0.692 1.0000
## SC3 - SC4 -0.1556 0.739 228 -0.211 1.0000
##
## Environment = E6:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) -3.4334 0.739 228 -4.647 0.0010
## (R1 - 1) - (R2 - 10) -6.0000 0.739 228 -8.121 <0.0001
## (R1 - 1) - (R2 - 15) 0.8667 0.739 228 1.173 0.9998
## (R1 - 1) - (R3 - 1) -2.9333 0.739 228 -3.970 0.0138
## (R1 - 1) - (R3 - 10) -9.0334 0.739 228 -12.227 <0.0001
## (R1 - 1) - (R3 - 14) -0.8000 0.739 228 -1.083 0.9999
## (R1 - 1) - (R3 - 17) -2.5000 0.739 228 -3.384 0.0912
## (R1 - 1) - (R3 - 19) -12.6667 0.739 228 -17.145 <0.0001
## (R1 - 1) - (R3 - 4) 0.3000 0.739 228 0.406 1.0000
## (R1 - 1) - (R3 - 7) 0.2000 0.739 228 0.271 1.0000
## (R1 - 1) - (R3 - 9) -3.5167 0.739 228 -4.760 0.0006
## (R1 - 1) - (R4 - 1) -1.7000 0.739 228 -2.301 0.7318
## (R1 - 1) - (R4 - 14) -2.5333 0.739 228 -3.429 0.0802
## (R1 - 1) - (R4 - 6) -7.2334 0.739 228 -9.791 <0.0001
## (R1 - 1) - (R4 - 8) -1.0667 0.739 228 -1.444 0.9965
## (R1 - 1) - SC1 -1.9000 0.739 228 -2.572 0.5301
## (R1 - 1) - SC2 -3.2667 0.739 228 -4.422 0.0025
## (R1 - 1) - SC3 -0.3333 0.739 228 -0.451 1.0000
## (R1 - 1) - SC4 -0.6000 0.739 228 -0.812 1.0000
## (R1 - 20) - (R2 - 10) -2.5667 0.739 228 -3.474 0.0703
## (R1 - 20) - (R2 - 15) 4.3000 0.739 228 5.820 <0.0001
## (R1 - 20) - (R3 - 1) 0.5000 0.739 228 0.677 1.0000
## (R1 - 20) - (R3 - 10) -5.6000 0.739 228 -7.580 <0.0001
## (R1 - 20) - (R3 - 14) 2.6333 0.739 228 3.564 0.0535
## (R1 - 20) - (R3 - 17) 0.9333 0.739 228 1.263 0.9994
## (R1 - 20) - (R3 - 19) -9.2334 0.739 228 -12.498 <0.0001
## (R1 - 20) - (R3 - 4) 3.7334 0.739 228 5.053 0.0002
## (R1 - 20) - (R3 - 7) 3.6334 0.739 228 4.918 0.0003
## (R1 - 20) - (R3 - 9) -0.0833 0.739 228 -0.113 1.0000
## (R1 - 20) - (R4 - 1) 1.7333 0.739 228 2.346 0.7001
## (R1 - 20) - (R4 - 14) 0.9000 0.739 228 1.218 0.9996
## (R1 - 20) - (R4 - 6) -3.8000 0.739 228 -5.143 0.0001
## (R1 - 20) - (R4 - 8) 2.3667 0.739 228 3.203 0.1483
## (R1 - 20) - SC1 1.5333 0.739 228 2.075 0.8658
## (R1 - 20) - SC2 0.1667 0.739 228 0.226 1.0000
## (R1 - 20) - SC3 3.1000 0.739 228 4.196 0.0060
## (R1 - 20) - SC4 2.8333 0.739 228 3.835 0.0222
## (R2 - 10) - (R2 - 15) 6.8667 0.739 228 9.294 <0.0001
## (R2 - 10) - (R3 - 1) 3.0667 0.739 228 4.151 0.0071
## (R2 - 10) - (R3 - 10) -3.0333 0.739 228 -4.106 0.0084
## (R2 - 10) - (R3 - 14) 5.2000 0.739 228 7.038 <0.0001
## (R2 - 10) - (R3 - 17) 3.5000 0.739 228 4.737 0.0007
## (R2 - 10) - (R3 - 19) -6.6667 0.739 228 -9.024 <0.0001
## (R2 - 10) - (R3 - 4) 6.3000 0.739 228 8.527 <0.0001
## (R2 - 10) - (R3 - 7) 6.2000 0.739 228 8.392 <0.0001
## (R2 - 10) - (R3 - 9) 2.4833 0.739 228 3.361 0.0972
## (R2 - 10) - (R4 - 1) 4.3000 0.739 228 5.820 <0.0001
## (R2 - 10) - (R4 - 14) 3.4667 0.739 228 4.692 0.0008
## (R2 - 10) - (R4 - 6) -1.2333 0.739 228 -1.669 0.9815
## (R2 - 10) - (R4 - 8) 4.9334 0.739 228 6.677 <0.0001
## (R2 - 10) - SC1 4.1000 0.739 228 5.549 <0.0001
## (R2 - 10) - SC2 2.7333 0.739 228 3.700 0.0348
## (R2 - 10) - SC3 5.6667 0.739 228 7.670 <0.0001
## (R2 - 10) - SC4 5.4000 0.739 228 7.309 <0.0001
## (R2 - 15) - (R3 - 1) -3.8000 0.739 228 -5.143 0.0001
## (R2 - 15) - (R3 - 10) -9.9000 0.739 228 -13.400 <0.0001
## (R2 - 15) - (R3 - 14) -1.6667 0.739 228 -2.256 0.7621
## (R2 - 15) - (R3 - 17) -3.3667 0.739 228 -4.557 0.0014
## (R2 - 15) - (R3 - 19) -13.5334 0.739 228 -18.318 <0.0001
## (R2 - 15) - (R3 - 4) -0.5667 0.739 228 -0.767 1.0000
## (R2 - 15) - (R3 - 7) -0.6667 0.739 228 -0.902 1.0000
## (R2 - 15) - (R3 - 9) -4.3834 0.739 228 -5.933 <0.0001
## (R2 - 15) - (R4 - 1) -2.5667 0.739 228 -3.474 0.0703
## (R2 - 15) - (R4 - 14) -3.4000 0.739 228 -4.602 0.0012
## (R2 - 15) - (R4 - 6) -8.1000 0.739 228 -10.964 <0.0001
## (R2 - 15) - (R4 - 8) -1.9333 0.739 228 -2.617 0.4957
## (R2 - 15) - SC1 -2.7667 0.739 228 -3.745 0.0300
## (R2 - 15) - SC2 -4.1334 0.739 228 -5.595 <0.0001
## (R2 - 15) - SC3 -1.2000 0.739 228 -1.624 0.9863
## (R2 - 15) - SC4 -1.4667 0.739 228 -1.985 0.9053
## (R3 - 1) - (R3 - 10) -6.1000 0.739 228 -8.257 <0.0001
## (R3 - 1) - (R3 - 14) 2.1333 0.739 228 2.888 0.3061
## (R3 - 1) - (R3 - 17) 0.4333 0.739 228 0.587 1.0000
## (R3 - 1) - (R3 - 19) -9.7334 0.739 228 -13.174 <0.0001
## (R3 - 1) - (R3 - 4) 3.2333 0.739 228 4.376 0.0029
## (R3 - 1) - (R3 - 7) 3.1333 0.739 228 4.241 0.0050
## (R3 - 1) - (R3 - 9) -0.5833 0.739 228 -0.790 1.0000
## (R3 - 1) - (R4 - 1) 1.2333 0.739 228 1.669 0.9815
## (R3 - 1) - (R4 - 14) 0.4000 0.739 228 0.541 1.0000
## (R3 - 1) - (R4 - 6) -4.3000 0.739 228 -5.820 <0.0001
## (R3 - 1) - (R4 - 8) 1.8667 0.739 228 2.527 0.5648
## (R3 - 1) - SC1 1.0333 0.739 228 1.399 0.9977
## (R3 - 1) - SC2 -0.3333 0.739 228 -0.451 1.0000
## (R3 - 1) - SC3 2.6000 0.739 228 3.519 0.0614
## (R3 - 1) - SC4 2.3333 0.739 228 3.158 0.1661
## (R3 - 10) - (R3 - 14) 8.2334 0.739 228 11.144 <0.0001
## (R3 - 10) - (R3 - 17) 6.5334 0.739 228 8.843 <0.0001
## (R3 - 10) - (R3 - 19) -3.6334 0.739 228 -4.918 0.0003
## (R3 - 10) - (R3 - 4) 9.3334 0.739 228 12.633 <0.0001
## (R3 - 10) - (R3 - 7) 9.2334 0.739 228 12.498 <0.0001
## (R3 - 10) - (R3 - 9) 5.5167 0.739 228 7.467 <0.0001
## (R3 - 10) - (R4 - 1) 7.3334 0.739 228 9.926 <0.0001
## (R3 - 10) - (R4 - 14) 6.5000 0.739 228 8.798 <0.0001
## (R3 - 10) - (R4 - 6) 1.8000 0.739 228 2.436 0.6336
## (R3 - 10) - (R4 - 8) 7.9667 0.739 228 10.783 <0.0001
## (R3 - 10) - SC1 7.1334 0.739 228 9.655 <0.0001
## (R3 - 10) - SC2 5.7667 0.739 228 7.805 <0.0001
## (R3 - 10) - SC3 8.7000 0.739 228 11.776 <0.0001
## (R3 - 10) - SC4 8.4334 0.739 228 11.415 <0.0001
## (R3 - 14) - (R3 - 17) -1.7000 0.739 228 -2.301 0.7318
## (R3 - 14) - (R3 - 19) -11.8667 0.739 228 -16.062 <0.0001
## (R3 - 14) - (R3 - 4) 1.1000 0.739 228 1.489 0.9950
## (R3 - 14) - (R3 - 7) 1.0000 0.739 228 1.354 0.9985
## (R3 - 14) - (R3 - 9) -2.7167 0.739 228 -3.677 0.0375
## (R3 - 14) - (R4 - 1) -0.9000 0.739 228 -1.218 0.9996
## (R3 - 14) - (R4 - 14) -1.7333 0.739 228 -2.346 0.7001
## (R3 - 14) - (R4 - 6) -6.4334 0.739 228 -8.708 <0.0001
## (R3 - 14) - (R4 - 8) -0.2667 0.739 228 -0.361 1.0000
## (R3 - 14) - SC1 -1.1000 0.739 228 -1.489 0.9950
## (R3 - 14) - SC2 -2.4667 0.739 228 -3.339 0.1035
## (R3 - 14) - SC3 0.4667 0.739 228 0.632 1.0000
## (R3 - 14) - SC4 0.2000 0.739 228 0.271 1.0000
## (R3 - 17) - (R3 - 19) -10.1667 0.739 228 -13.761 <0.0001
## (R3 - 17) - (R3 - 4) 2.8000 0.739 228 3.790 0.0258
## (R3 - 17) - (R3 - 7) 2.7000 0.739 228 3.655 0.0403
## (R3 - 17) - (R3 - 9) -1.0167 0.739 228 -1.376 0.9981
## (R3 - 17) - (R4 - 1) 0.8000 0.739 228 1.083 0.9999
## (R3 - 17) - (R4 - 14) -0.0333 0.739 228 -0.045 1.0000
## (R3 - 17) - (R4 - 6) -4.7334 0.739 228 -6.407 <0.0001
## (R3 - 17) - (R4 - 8) 1.4333 0.739 228 1.940 0.9218
## (R3 - 17) - SC1 0.6000 0.739 228 0.812 1.0000
## (R3 - 17) - SC2 -0.7667 0.739 228 -1.038 1.0000
## (R3 - 17) - SC3 2.1667 0.739 228 2.933 0.2788
## (R3 - 17) - SC4 1.9000 0.739 228 2.572 0.5301
## (R3 - 19) - (R3 - 4) 12.9667 0.739 228 17.551 <0.0001
## (R3 - 19) - (R3 - 7) 12.8667 0.739 228 17.415 <0.0001
## (R3 - 19) - (R3 - 9) 9.1500 0.739 228 12.385 <0.0001
## (R3 - 19) - (R4 - 1) 10.9667 0.739 228 14.844 <0.0001
## (R3 - 19) - (R4 - 14) 10.1334 0.739 228 13.716 <0.0001
## (R3 - 19) - (R4 - 6) 5.4334 0.739 228 7.354 <0.0001
## (R3 - 19) - (R4 - 8) 11.6001 0.739 228 15.701 <0.0001
## (R3 - 19) - SC1 10.7667 0.739 228 14.573 <0.0001
## (R3 - 19) - SC2 9.4000 0.739 228 12.723 <0.0001
## (R3 - 19) - SC3 12.3334 0.739 228 16.693 <0.0001
## (R3 - 19) - SC4 12.0667 0.739 228 16.333 <0.0001
## (R3 - 4) - (R3 - 7) -0.1000 0.739 228 -0.135 1.0000
## (R3 - 4) - (R3 - 9) -3.8167 0.739 228 -5.166 <0.0001
## (R3 - 4) - (R4 - 1) -2.0000 0.739 228 -2.707 0.4285
## (R3 - 4) - (R4 - 14) -2.8333 0.739 228 -3.835 0.0222
## (R3 - 4) - (R4 - 6) -7.5334 0.739 228 -10.197 <0.0001
## (R3 - 4) - (R4 - 8) -1.3667 0.739 228 -1.850 0.9488
## (R3 - 4) - SC1 -2.2000 0.739 228 -2.978 0.2531
## (R3 - 4) - SC2 -3.5667 0.739 228 -4.828 0.0004
## (R3 - 4) - SC3 -0.6333 0.739 228 -0.857 1.0000
## (R3 - 4) - SC4 -0.9000 0.739 228 -1.218 0.9996
## (R3 - 7) - (R3 - 9) -3.7167 0.739 228 -5.031 0.0002
## (R3 - 7) - (R4 - 1) -1.9000 0.739 228 -2.572 0.5301
## (R3 - 7) - (R4 - 14) -2.7333 0.739 228 -3.700 0.0348
## (R3 - 7) - (R4 - 6) -7.4334 0.739 228 -10.061 <0.0001
## (R3 - 7) - (R4 - 8) -1.2667 0.739 228 -1.714 0.9756
## (R3 - 7) - SC1 -2.1000 0.739 228 -2.842 0.3348
## (R3 - 7) - SC2 -3.4667 0.739 228 -4.692 0.0008
## (R3 - 7) - SC3 -0.5333 0.739 228 -0.722 1.0000
## (R3 - 7) - SC4 -0.8000 0.739 228 -1.083 0.9999
## (R3 - 9) - (R4 - 1) 1.8167 0.739 228 2.459 0.6165
## (R3 - 9) - (R4 - 14) 0.9833 0.739 228 1.331 0.9988
## (R3 - 9) - (R4 - 6) -3.7167 0.739 228 -5.031 0.0002
## (R3 - 9) - (R4 - 8) 2.4500 0.739 228 3.316 0.1101
## (R3 - 9) - SC1 1.6167 0.739 228 2.188 0.8045
## (R3 - 9) - SC2 0.2500 0.739 228 0.338 1.0000
## (R3 - 9) - SC3 3.1833 0.739 228 4.309 0.0039
## (R3 - 9) - SC4 2.9167 0.739 228 3.948 0.0150
## (R4 - 1) - (R4 - 14) -0.8333 0.739 228 -1.128 0.9999
## (R4 - 1) - (R4 - 6) -5.5334 0.739 228 -7.490 <0.0001
## (R4 - 1) - (R4 - 8) 0.6333 0.739 228 0.857 1.0000
## (R4 - 1) - SC1 -0.2000 0.739 228 -0.271 1.0000
## (R4 - 1) - SC2 -1.5667 0.739 228 -2.121 0.8428
## (R4 - 1) - SC3 1.3667 0.739 228 1.850 0.9488
## (R4 - 1) - SC4 1.1000 0.739 228 1.489 0.9950
## (R4 - 14) - (R4 - 6) -4.7000 0.739 228 -6.362 <0.0001
## (R4 - 14) - (R4 - 8) 1.4667 0.739 228 1.985 0.9053
## (R4 - 14) - SC1 0.6333 0.739 228 0.857 1.0000
## (R4 - 14) - SC2 -0.7333 0.739 228 -0.993 1.0000
## (R4 - 14) - SC3 2.2000 0.739 228 2.978 0.2531
## (R4 - 14) - SC4 1.9333 0.739 228 2.617 0.4957
## (R4 - 6) - (R4 - 8) 6.1667 0.739 228 8.347 <0.0001
## (R4 - 6) - SC1 5.3334 0.739 228 7.219 <0.0001
## (R4 - 6) - SC2 3.9667 0.739 228 5.369 <0.0001
## (R4 - 6) - SC3 6.9000 0.739 228 9.339 <0.0001
## (R4 - 6) - SC4 6.6334 0.739 228 8.978 <0.0001
## (R4 - 8) - SC1 -0.8333 0.739 228 -1.128 0.9999
## (R4 - 8) - SC2 -2.2000 0.739 228 -2.978 0.2531
## (R4 - 8) - SC3 0.7333 0.739 228 0.993 1.0000
## (R4 - 8) - SC4 0.4667 0.739 228 0.632 1.0000
## SC1 - SC2 -1.3667 0.739 228 -1.850 0.9488
## SC1 - SC3 1.5667 0.739 228 2.121 0.8428
## SC1 - SC4 1.3000 0.739 228 1.760 0.9683
## SC2 - SC3 2.9333 0.739 228 3.970 0.0138
## SC2 - SC4 2.6667 0.739 228 3.609 0.0465
## SC3 - SC4 -0.2667 0.739 228 -0.361 1.0000
##
## Degrees-of-freedom method: kenward-roger
## P value adjustment: tukey method for comparing a family of 20 estimates================================================================
20. CONFIDENCE INTERVAL
================================================================
confint(
emm_GE
)## Environment = E1:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 4.23 0.53 237 3.190 5.28
## R1 - 20 4.23 0.53 237 3.190 5.28
## R2 - 10 8.90 0.53 237 7.856 9.94
## R2 - 15 7.27 0.53 237 6.223 8.31
## R3 - 1 7.07 0.53 237 6.023 8.11
## R3 - 10 6.87 0.53 237 5.823 7.91
## R3 - 14 3.80 0.53 237 2.756 4.84
## R3 - 17 6.02 0.53 237 4.979 7.07
## R3 - 19 5.43 0.53 237 4.390 6.48
## R3 - 4 5.71 0.53 237 4.667 6.75
## R3 - 7 3.67 0.53 237 2.623 4.71
## R3 - 9 4.87 0.53 237 3.823 5.91
## R4 - 1 7.60 0.53 237 6.556 8.64
## R4 - 14 3.27 0.53 237 2.223 4.31
## R4 - 6 7.30 0.53 237 6.256 8.34
## R4 - 8 8.80 0.53 237 7.756 9.84
## SC1 6.80 0.53 237 5.756 7.84
## SC2 2.73 0.53 237 1.690 3.78
## SC3 4.60 0.53 237 3.556 5.64
## SC4 5.63 0.53 237 4.590 6.68
##
## Environment = E2:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 4.37 0.53 237 3.323 5.41
## R1 - 20 5.27 0.53 237 4.223 6.31
## R2 - 10 4.33 0.53 237 3.290 5.38
## R2 - 15 2.43 0.53 237 1.390 3.48
## R3 - 1 3.47 0.53 237 2.423 4.51
## R3 - 10 6.53 0.53 237 5.490 7.58
## R3 - 14 5.00 0.53 237 3.956 6.04
## R3 - 17 4.23 0.53 237 3.190 5.28
## R3 - 19 2.77 0.53 237 1.723 3.81
## R3 - 4 6.40 0.53 237 5.356 7.44
## R3 - 7 7.07 0.53 237 6.023 8.11
## R3 - 9 4.77 0.53 237 3.723 5.81
## R4 - 1 7.27 0.53 237 6.223 8.31
## R4 - 14 6.05 0.53 237 5.006 7.09
## R4 - 6 6.40 0.53 237 5.356 7.44
## R4 - 8 5.03 0.53 237 3.990 6.08
## SC1 4.13 0.53 237 3.090 5.18
## SC2 5.20 0.53 237 4.156 6.24
## SC3 5.13 0.53 237 4.090 6.18
## SC4 2.97 0.53 237 1.923 4.01
##
## Environment = E3:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 6.33 0.53 237 5.290 7.38
## R1 - 20 8.20 0.53 237 7.156 9.24
## R2 - 10 6.07 0.53 237 5.023 7.11
## R2 - 15 6.83 0.53 237 5.790 7.88
## R3 - 1 8.67 0.53 237 7.623 9.71
## R3 - 10 7.77 0.53 237 6.723 8.81
## R3 - 14 4.17 0.53 237 3.123 5.21
## R3 - 17 7.07 0.53 237 6.023 8.11
## R3 - 19 5.13 0.53 237 4.090 6.18
## R3 - 4 4.20 0.53 237 3.156 5.24
## R3 - 7 10.60 0.53 237 9.556 11.64
## R3 - 9 6.44 0.53 237 5.401 7.49
## R4 - 1 6.57 0.53 237 5.523 7.61
## R4 - 14 8.91 0.53 237 7.868 9.95
## R4 - 6 5.07 0.53 237 4.023 6.11
## R4 - 8 2.53 0.53 237 1.490 3.58
## SC1 3.70 0.53 237 2.656 4.74
## SC2 4.47 0.53 237 3.423 5.51
## SC3 5.87 0.53 237 4.823 6.91
## SC4 5.83 0.53 237 4.790 6.88
##
## Environment = E4:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 8.03 0.53 237 6.990 9.08
## R1 - 20 1.57 0.53 237 0.523 2.61
## R2 - 10 15.33 0.53 237 14.290 16.38
## R2 - 15 6.77 0.53 237 5.723 7.81
## R3 - 1 7.00 0.53 237 5.956 8.04
## R3 - 10 13.40 0.53 237 12.356 14.44
## R3 - 14 2.73 0.53 237 1.690 3.78
## R3 - 17 8.07 0.53 237 7.023 9.11
## R3 - 19 5.40 0.53 237 4.356 6.44
## R3 - 4 4.13 0.53 237 3.090 5.18
## R3 - 7 10.47 0.53 237 9.423 11.51
## R3 - 9 7.42 0.53 237 6.373 8.46
## R4 - 1 14.00 0.53 237 12.956 15.04
## R4 - 14 7.43 0.53 237 6.390 8.48
## R4 - 6 3.07 0.53 237 2.023 4.11
## R4 - 8 7.72 0.53 237 6.673 8.76
## SC1 11.07 0.53 237 10.023 12.11
## SC2 8.37 0.53 237 7.323 9.41
## SC3 5.70 0.53 237 4.656 6.74
## SC4 3.80 0.53 237 2.756 4.84
##
## Environment = E5:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 9.33 0.53 237 8.290 10.38
## R1 - 20 6.93 0.53 237 5.890 7.98
## R2 - 10 5.00 0.53 237 3.956 6.04
## R2 - 15 7.93 0.53 237 6.890 8.98
## R3 - 1 2.63 0.53 237 1.590 3.68
## R3 - 10 5.77 0.53 237 4.723 6.81
## R3 - 14 4.87 0.53 237 3.823 5.91
## R3 - 17 3.37 0.53 237 2.323 4.41
## R3 - 19 3.63 0.53 237 2.590 4.68
## R3 - 4 6.83 0.53 237 5.790 7.88
## R3 - 7 5.47 0.53 237 4.423 6.51
## R3 - 9 4.97 0.53 237 3.923 6.01
## R4 - 1 2.43 0.53 237 1.390 3.48
## R4 - 14 2.93 0.53 237 1.890 3.98
## R4 - 6 2.31 0.53 237 1.267 3.35
## R4 - 8 2.10 0.53 237 1.056 3.14
## SC1 4.80 0.53 237 3.756 5.84
## SC2 5.29 0.53 237 4.245 6.33
## SC3 5.64 0.53 237 4.601 6.69
## SC4 5.80 0.53 237 4.756 6.84
##
## Environment = E6:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 2.40 0.53 237 1.356 3.44
## R1 - 20 5.83 0.53 237 4.790 6.88
## R2 - 10 8.40 0.53 237 7.356 9.44
## R2 - 15 1.53 0.53 237 0.490 2.58
## R3 - 1 5.33 0.53 237 4.290 6.38
## R3 - 10 11.43 0.53 237 10.390 12.48
## R3 - 14 3.20 0.53 237 2.156 4.24
## R3 - 17 4.90 0.53 237 3.856 5.94
## R3 - 19 15.07 0.53 237 14.023 16.11
## R3 - 4 2.10 0.53 237 1.056 3.14
## R3 - 7 2.20 0.53 237 1.156 3.24
## R3 - 9 5.92 0.53 237 4.873 6.96
## R4 - 1 4.10 0.53 237 3.056 5.14
## R4 - 14 4.93 0.53 237 3.890 5.98
## R4 - 6 9.63 0.53 237 8.590 10.68
## R4 - 8 3.47 0.53 237 2.423 4.51
## SC1 4.30 0.53 237 3.256 5.34
## SC2 5.67 0.53 237 4.623 6.71
## SC3 2.73 0.53 237 1.690 3.78
## SC4 3.00 0.53 237 1.956 4.04
##
## Degrees-of-freedom method: kenward-roger
## Confidence level used: 0.95================================================================
21. KELOMPOK HURUF GENOTYPE
PADA MASING-MASING ENVIRONMENT
================================================================
cld_GE <- cld(
emm_GE,
Letters = letters,
adjust = "tukey"
)## Note: adjust = "tukey" was changed to "sidak"
## because "tukey" is only appropriate for one set of pairwise comparisonscld_GE## Environment = E1:
## Genotype emmean SE df lower.CL upper.CL .group
## SC2 2.73 0.53 237 1.1184 4.35 a
## R4 - 14 3.27 0.53 237 1.6517 4.88 ab
## R3 - 7 3.67 0.53 237 2.0517 5.28 abc
## R3 - 14 3.80 0.53 237 2.1851 5.41 abc
## R1 - 1 4.23 0.53 237 2.6184 5.85 abcd
## R1 - 20 4.23 0.53 237 2.6184 5.85 abcd
## SC3 4.60 0.53 237 2.9851 6.21 abcde
## R3 - 9 4.87 0.53 237 3.2517 6.48 abcdef
## R3 - 19 5.43 0.53 237 3.8184 7.05 bcdefg
## SC4 5.63 0.53 237 4.0184 7.25 bcdefg
## R3 - 4 5.71 0.53 237 4.0962 7.33 bcdefg
## R3 - 17 6.02 0.53 237 4.4073 7.64 cdefg
## SC1 6.80 0.53 237 5.1851 8.41 defgh
## R3 - 10 6.87 0.53 237 5.2517 8.48 defgh
## R3 - 1 7.07 0.53 237 5.4517 8.68 efgh
## R2 - 15 7.27 0.53 237 5.6517 8.88 fgh
## R4 - 6 7.30 0.53 237 5.6851 8.91 fgh
## R4 - 1 7.60 0.53 237 5.9851 9.21 gh
## R4 - 8 8.80 0.53 237 7.1851 10.41 h
## R2 - 10 8.90 0.53 237 7.2851 10.51 h
##
## Environment = E2:
## Genotype emmean SE df lower.CL upper.CL .group
## R2 - 15 2.43 0.53 237 0.8184 4.05 a
## R3 - 19 2.77 0.53 237 1.1518 4.38 ab
## SC4 2.97 0.53 237 1.3518 4.58 ab
## R3 - 1 3.47 0.53 237 1.8518 5.08 abc
## SC1 4.13 0.53 237 2.5184 5.75 abcd
## R3 - 17 4.23 0.53 237 2.6184 5.85 abcd
## R2 - 10 4.33 0.53 237 2.7184 5.95 abcd
## R1 - 1 4.37 0.53 237 2.7518 5.98 abcd
## R3 - 9 4.77 0.53 237 3.1518 6.38 abcde
## R3 - 14 5.00 0.53 237 3.3851 6.61 abcde
## R4 - 8 5.03 0.53 237 3.4184 6.65 abcde
## SC3 5.13 0.53 237 3.5184 6.75 bcde
## SC2 5.20 0.53 237 3.5851 6.81 bcde
## R1 - 20 5.27 0.53 237 3.6518 6.88 bcde
## R4 - 14 6.05 0.53 237 4.4351 7.66 cde
## R3 - 4 6.40 0.53 237 4.7851 8.01 de
## R4 - 6 6.40 0.53 237 4.7851 8.01 de
## R3 - 10 6.53 0.53 237 4.9184 8.15 de
## R3 - 7 7.07 0.53 237 5.4518 8.68 e
## R4 - 1 7.27 0.53 237 5.6518 8.88 e
##
## Environment = E3:
## Genotype emmean SE df lower.CL upper.CL .group
## R4 - 8 2.53 0.53 237 0.9184 4.15 a
## SC1 3.70 0.53 237 2.0851 5.31 ab
## R3 - 14 4.17 0.53 237 2.5518 5.78 abc
## R3 - 4 4.20 0.53 237 2.5851 5.81 abcd
## SC2 4.47 0.53 237 2.8518 6.08 abcde
## R4 - 6 5.07 0.53 237 3.4518 6.68 abcde
## R3 - 19 5.13 0.53 237 3.5184 6.75 abcdef
## SC4 5.83 0.53 237 4.2184 7.45 bcdefg
## SC3 5.87 0.53 237 4.2518 7.48 bcdefg
## R2 - 10 6.07 0.53 237 4.4518 7.68 bcdefgh
## R1 - 1 6.33 0.53 237 4.7184 7.95 bcdefghi
## R3 - 9 6.44 0.53 237 4.8295 8.06 cdefghi
## R4 - 1 6.57 0.53 237 4.9518 8.18 cdefghi
## R2 - 15 6.83 0.53 237 5.2184 8.45 defghi
## R3 - 17 7.07 0.53 237 5.4518 8.68 efghi
## R3 - 10 7.77 0.53 237 6.1518 9.38 fghi
## R1 - 20 8.20 0.53 237 6.5851 9.81 ghij
## R3 - 1 8.67 0.53 237 7.0518 10.28 hij
## R4 - 14 8.91 0.53 237 7.2962 10.53 ij
## R3 - 7 10.60 0.53 237 8.9851 12.21 j
##
## Environment = E4:
## Genotype emmean SE df lower.CL upper.CL .group
## R1 - 20 1.57 0.53 237 -0.0483 3.18 a
## R3 - 14 2.73 0.53 237 1.1184 4.35 a
## R4 - 6 3.07 0.53 237 1.4517 4.68 ab
## SC4 3.80 0.53 237 2.1851 5.41 ab
## R3 - 4 4.13 0.53 237 2.5184 5.75 abc
## R3 - 19 5.40 0.53 237 3.7851 7.01 bcd
## SC3 5.70 0.53 237 4.0851 7.31 bcde
## R2 - 15 6.77 0.53 237 5.1517 8.38 cdef
## R3 - 1 7.00 0.53 237 5.3851 8.61 def
## R3 - 9 7.42 0.53 237 5.8017 9.03 def
## R4 - 14 7.43 0.53 237 5.8184 9.05 def
## R4 - 8 7.72 0.53 237 6.1017 9.33 def
## R1 - 1 8.03 0.53 237 6.4184 9.65 defg
## R3 - 17 8.07 0.53 237 6.4517 9.68 efg
## SC2 8.37 0.53 237 6.7517 9.98 fg
## R3 - 7 10.47 0.53 237 8.8517 12.08 gh
## SC1 11.07 0.53 237 9.4517 12.68 hi
## R3 - 10 13.40 0.53 237 11.7851 15.01 ij
## R4 - 1 14.00 0.53 237 12.3851 15.61 j
## R2 - 10 15.33 0.53 237 13.7184 16.95 j
##
## Environment = E5:
## Genotype emmean SE df lower.CL upper.CL .group
## R4 - 8 2.10 0.53 237 0.4851 3.71 a
## R4 - 6 2.31 0.53 237 0.6962 3.93 ab
## R4 - 1 2.43 0.53 237 0.8184 4.05 abc
## R3 - 1 2.63 0.53 237 1.0184 4.25 abc
## R4 - 14 2.93 0.53 237 1.3184 4.55 abcd
## R3 - 17 3.37 0.53 237 1.7518 4.98 abcde
## R3 - 19 3.63 0.53 237 2.0184 5.25 abcde
## SC1 4.80 0.53 237 3.1851 6.41 bcdef
## R3 - 14 4.87 0.53 237 3.2518 6.48 bcdef
## R3 - 9 4.97 0.53 237 3.3518 6.58 cdef
## R2 - 10 5.00 0.53 237 3.3851 6.61 cdef
## SC2 5.29 0.53 237 3.6740 6.90 defg
## R3 - 7 5.47 0.53 237 3.8518 7.08 defg
## SC3 5.64 0.53 237 4.0295 7.26 efg
## R3 - 10 5.77 0.53 237 4.1518 7.38 efg
## SC4 5.80 0.53 237 4.1851 7.41 efg
## R3 - 4 6.83 0.53 237 5.2184 8.45 fgh
## R1 - 20 6.93 0.53 237 5.3184 8.55 fgh
## R2 - 15 7.93 0.53 237 6.3184 9.55 gh
## R1 - 1 9.33 0.53 237 7.7185 10.95 h
##
## Environment = E6:
## Genotype emmean SE df lower.CL upper.CL .group
## R2 - 15 1.53 0.53 237 -0.0816 3.15 a
## R3 - 4 2.10 0.53 237 0.4851 3.71 ab
## R3 - 7 2.20 0.53 237 0.5851 3.81 ab
## R1 - 1 2.40 0.53 237 0.7851 4.01 abc
## SC3 2.73 0.53 237 1.1184 4.35 abcd
## SC4 3.00 0.53 237 1.3851 4.61 abcd
## R3 - 14 3.20 0.53 237 1.5851 4.81 abcde
## R4 - 8 3.47 0.53 237 1.8518 5.08 abcdef
## R4 - 1 4.10 0.53 237 2.4851 5.71 abcdef
## SC1 4.30 0.53 237 2.6851 5.91 bcdef
## R3 - 17 4.90 0.53 237 3.2851 6.51 cdef
## R4 - 14 4.93 0.53 237 3.3184 6.55 cdef
## R3 - 1 5.33 0.53 237 3.7184 6.95 def
## SC2 5.67 0.53 237 4.0518 7.28 ef
## R1 - 20 5.83 0.53 237 4.2184 7.45 efg
## R3 - 9 5.92 0.53 237 4.3018 7.53 fg
## R2 - 10 8.40 0.53 237 6.7851 10.01 gh
## R4 - 6 9.63 0.53 237 8.0185 11.25 hi
## R3 - 10 11.43 0.53 237 9.8185 13.05 i
## R3 - 19 15.07 0.53 237 13.4518 16.68 j
##
## Degrees-of-freedom method: kenward-roger
## Confidence level used: 0.95
## Conf-level adjustment: sidak method for 20 estimates
## P value adjustment: tukey method for comparing a family of 20 estimates
## significance level used: alpha = 0.05
## NOTE: If two or more means share the same grouping symbol,
## then we cannot show them to be different.
## But we also did not show them to be the same.================================================================
22. GRAFIK INTERAKSI GENOTYPE x ENVIRONMENT
================================================================
emmip(
model_yield,
Environment ~ Genotype,
CIs = TRUE
)
# Alternatif tampilan
emmip(
model_yield,
Genotype ~ Environment,
CIs = TRUE
)
================================================================
23. RATA-RATA OBSERVASI UNTUK GRAFIK
================================================================
mean_GE <- aggregate(
Yield ~ Genotype + Environment,
data = data,
FUN = mean
)
mean_GE## Genotype Environment Yield
## 1 R1 - 1 E1 4.233333
## 2 R1 - 20 E1 4.233333
## 3 R2 - 10 E1 8.900000
## 4 R2 - 15 E1 7.266667
## 5 R3 - 1 E1 7.066667
## 6 R3 - 10 E1 6.866667
## 7 R3 - 14 E1 3.800000
## 8 R3 - 17 E1 6.022222
## 9 R3 - 19 E1 5.433333
## 10 R3 - 4 E1 5.711111
## 11 R3 - 7 E1 3.666667
## 12 R3 - 9 E1 4.866667
## 13 R4 - 1 E1 7.600000
## 14 R4 - 14 E1 3.266667
## 15 R4 - 6 E1 7.300000
## 16 R4 - 8 E1 8.800000
## 17 SC1 E1 6.800000
## 18 SC2 E1 2.733333
## 19 SC3 E1 4.600000
## 20 SC4 E1 5.633333
## 21 R1 - 1 E2 4.366689
## 22 R1 - 20 E2 5.266693
## 23 R2 - 10 E2 4.333355
## 24 R2 - 15 E2 2.433346
## 25 R3 - 1 E2 3.466684
## 26 R3 - 10 E2 6.533366
## 27 R3 - 14 E2 5.000025
## 28 R3 - 17 E2 4.233354
## 29 R3 - 19 E2 2.766681
## 30 R3 - 4 E2 6.400032
## 31 R3 - 7 E2 7.066702
## 32 R3 - 9 E2 4.766691
## 33 R4 - 1 E2 7.266703
## 34 R4 - 14 E2 6.050030
## 35 R4 - 6 E2 6.400032
## 36 R4 - 8 E2 5.033359
## 37 SC1 E2 4.133354
## 38 SC2 E2 5.200026
## 39 SC3 E2 5.133359
## 40 SC4 E2 2.966681
## 41 R1 - 1 E3 6.333365
## 42 R1 - 20 E3 8.200041
## 43 R2 - 10 E3 6.066697
## 44 R2 - 15 E3 6.833368
## 45 R3 - 1 E3 8.666710
## 46 R3 - 10 E3 7.766706
## 47 R3 - 14 E3 4.166688
## 48 R3 - 17 E3 7.066702
## 49 R3 - 19 E3 5.133359
## 50 R3 - 4 E3 4.200021
## 51 R3 - 7 E3 10.600053
## 52 R3 - 9 E3 6.444477
## 53 R4 - 1 E3 6.566700
## 54 R4 - 14 E3 8.911156
## 55 R4 - 6 E3 5.066692
## 56 R4 - 8 E3 2.533346
## 57 SC1 E3 3.700019
## 58 SC2 E3 4.466689
## 59 SC3 E3 5.866696
## 60 SC4 E3 5.833362
## 61 R1 - 1 E4 8.033333
## 62 R1 - 20 E4 1.566667
## 63 R2 - 10 E4 15.333333
## 64 R2 - 15 E4 6.766667
## 65 R3 - 1 E4 7.000000
## 66 R3 - 10 E4 13.400000
## 67 R3 - 14 E4 2.733333
## 68 R3 - 17 E4 8.066667
## 69 R3 - 19 E4 5.400000
## 70 R3 - 4 E4 4.133333
## 71 R3 - 7 E4 10.466667
## 72 R3 - 9 E4 7.416667
## 73 R4 - 1 E4 14.000000
## 74 R4 - 14 E4 7.433333
## 75 R4 - 6 E4 3.066667
## 76 R4 - 8 E4 7.716667
## 77 SC1 E4 11.066667
## 78 SC2 E4 8.366667
## 79 SC3 E4 5.700000
## 80 SC4 E4 3.800000
## 81 R1 - 1 E5 9.333380
## 82 R1 - 20 E5 6.933368
## 83 R2 - 10 E5 5.000025
## 84 R2 - 15 E5 7.933373
## 85 R3 - 1 E5 2.633347
## 86 R3 - 10 E5 5.766695
## 87 R3 - 14 E5 4.866691
## 88 R3 - 17 E5 3.366684
## 89 R3 - 19 E5 3.633351
## 90 R3 - 4 E5 6.833367
## 91 R3 - 7 E5 5.466694
## 92 R3 - 9 E5 4.966691
## 93 R4 - 1 E5 2.433346
## 94 R4 - 14 E5 2.933348
## 95 R4 - 6 E5 2.311123
## 96 R4 - 8 E5 2.100010
## 97 SC1 E5 4.800024
## 98 SC2 E5 5.288915
## 99 SC3 E5 5.644473
## 100 SC4 E5 5.800029
## 101 R1 - 1 E6 2.400012
## 102 R1 - 20 E6 5.833362
## 103 R2 - 10 E6 8.400042
## 104 R2 - 15 E6 1.533341
## 105 R3 - 1 E6 5.333360
## 106 R3 - 10 E6 11.433390
## 107 R3 - 14 E6 3.200016
## 108 R3 - 17 E6 4.900024
## 109 R3 - 19 E6 15.066742
## 110 R3 - 4 E6 2.100010
## 111 R3 - 7 E6 2.200011
## 112 R3 - 9 E6 5.916696
## 113 R4 - 1 E6 4.100021
## 114 R4 - 14 E6 4.933358
## 115 R4 - 6 E6 9.633382
## 116 R4 - 8 E6 3.466684
## 117 SC1 E6 4.300021
## 118 SC2 E6 5.666695
## 119 SC3 E6 2.733347
## 120 SC4 E6 3.000015================================================================
24. MODEL UNTUK BIOMASS
================================================================
Analisis tambahan jika Biomass juga ingin dianalisis
================================================================
model_biomass <- lmer(
Biomass ~ Genotype * Environment +
(1 | Environment:Replications),
data = data,
REML = TRUE
)
# Ringkasan
summary(model_biomass)## Linear mixed model fit by REML. t-tests use Satterthwaite's method [
## lmerModLmerTest]
## Formula: Biomass ~ Genotype * Environment + (1 | Environment:Replications)
## Data: data
##
## REML criterion at convergence: 3081.2
##
## Scaled residuals:
## Min 1Q Median 3Q Max
## -2.9173 -0.3683 0.0200 0.3334 2.4094
##
## Random effects:
## Groups Name Variance Std.Dev.
## Environment:Replications (Intercept) 918.7 30.31
## Residual 12150.9 110.23
## Number of obs: 360, groups: Environment:Replications, 18
##
## Fixed effects:
## Estimate Std. Error df t value Pr(>|t|)
## (Intercept) 929.667 66.004 219.402 14.085 < 2e-16 ***
## GenotypeR1 - 20 -56.333 90.003 228.000 -0.626 0.532005
## GenotypeR2 - 10 596.833 90.003 228.000 6.631 2.38e-10 ***
## GenotypeR2 - 15 -289.833 90.003 228.000 -3.220 0.001468 **
## GenotypeR3 - 1 233.333 90.003 228.000 2.592 0.010144 *
## GenotypeR3 - 10 -50.000 90.003 228.000 -0.556 0.579074
## GenotypeR3 - 14 503.667 90.003 228.000 5.596 6.26e-08 ***
## GenotypeR3 - 17 139.000 90.003 228.000 1.544 0.123882
## GenotypeR3 - 19 -65.333 90.003 228.000 -0.726 0.468645
## GenotypeR3 - 4 223.167 90.003 228.000 2.480 0.013879 *
## GenotypeR3 - 7 69.583 90.003 228.000 0.773 0.440253
## GenotypeR3 - 9 -65.833 90.003 228.000 -0.731 0.465253
## GenotypeR4 - 1 575.333 90.003 228.000 6.392 9.12e-10 ***
## GenotypeR4 - 14 -192.317 90.003 228.000 -2.137 0.033682 *
## GenotypeR4 - 6 150.833 90.003 228.000 1.676 0.095136 .
## GenotypeR4 - 8 581.833 90.003 228.000 6.465 6.10e-10 ***
## GenotypeSC1 339.667 90.003 228.000 3.774 0.000205 ***
## GenotypeSC2 341.583 90.003 228.000 3.795 0.000189 ***
## GenotypeSC3 385.333 90.003 228.000 4.281 2.74e-05 ***
## GenotypeSC4 215.500 90.003 228.000 2.394 0.017459 *
## EnvironmentE2 -167.500 93.344 219.402 -1.794 0.074120 .
## EnvironmentE3 -334.250 93.344 219.402 -3.581 0.000422 ***
## EnvironmentE4 -234.667 93.344 219.402 -2.514 0.012655 *
## EnvironmentE5 -650.667 93.344 219.402 -6.971 3.65e-11 ***
## EnvironmentE6 -788.667 93.344 219.402 -8.449 4.07e-15 ***
## GenotypeR1 - 20:EnvironmentE2 101.917 127.284 228.000 0.801 0.424137
## GenotypeR2 - 10:EnvironmentE2 -168.850 127.284 228.000 -1.327 0.185981
## GenotypeR2 - 15:EnvironmentE2 169.667 127.284 228.000 1.333 0.183870
## GenotypeR3 - 1:EnvironmentE2 -302.667 127.284 228.000 -2.378 0.018238 *
## GenotypeR3 - 10:EnvironmentE2 205.083 127.284 228.000 1.611 0.108514
## GenotypeR3 - 14:EnvironmentE2 -728.833 127.284 228.000 -5.726 3.22e-08 ***
## GenotypeR3 - 17:EnvironmentE2 -358.167 127.284 228.000 -2.814 0.005322 **
## GenotypeR3 - 19:EnvironmentE2 356.167 127.284 228.000 2.798 0.005578 **
## GenotypeR3 - 4:EnvironmentE2 -56.000 127.284 228.000 -0.440 0.660382
## GenotypeR3 - 7:EnvironmentE2 76.417 127.284 228.000 0.600 0.548860
## GenotypeR3 - 9:EnvironmentE2 243.917 127.284 228.000 1.916 0.056575 .
## GenotypeR4 - 1:EnvironmentE2 -8.000 127.284 228.000 -0.063 0.949940
## GenotypeR4 - 14:EnvironmentE2 286.150 127.284 228.000 2.248 0.025525 *
## GenotypeR4 - 6:EnvironmentE2 -299.333 127.284 228.000 -2.352 0.019540 *
## GenotypeR4 - 8:EnvironmentE2 -533.850 127.284 228.000 -4.194 3.92e-05 ***
## GenotypeSC1:EnvironmentE2 -310.167 127.284 228.000 -2.437 0.015584 *
## GenotypeSC2:EnvironmentE2 -576.583 127.284 228.000 -4.530 9.52e-06 ***
## GenotypeSC3:EnvironmentE2 -367.000 127.284 228.000 -2.883 0.004312 **
## GenotypeSC4:EnvironmentE2 -356.000 127.284 228.000 -2.797 0.005600 **
## GenotypeR1 - 20:EnvironmentE3 285.917 127.284 228.000 2.246 0.025644 *
## GenotypeR2 - 10:EnvironmentE3 -525.250 127.284 228.000 -4.127 5.16e-05 ***
## GenotypeR2 - 15:EnvironmentE3 701.917 127.284 228.000 5.515 9.44e-08 ***
## GenotypeR3 - 1:EnvironmentE3 115.250 127.284 228.000 0.905 0.366180
## GenotypeR3 - 10:EnvironmentE3 406.583 127.284 228.000 3.194 0.001600 **
## GenotypeR3 - 14:EnvironmentE3 -267.333 127.284 228.000 -2.100 0.036802 *
## GenotypeR3 - 17:EnvironmentE3 192.167 127.284 228.000 1.510 0.132492
## GenotypeR3 - 19:EnvironmentE3 243.750 127.284 228.000 1.915 0.056743 .
## GenotypeR3 - 4:EnvironmentE3 112.667 127.284 228.000 0.885 0.377003
## GenotypeR3 - 7:EnvironmentE3 348.667 127.284 228.000 2.739 0.006644 **
## GenotypeR3 - 9:EnvironmentE3 241.083 127.284 228.000 1.894 0.059483 .
## GenotypeR4 - 1:EnvironmentE3 -621.417 127.284 228.000 -4.882 1.97e-06 ***
## GenotypeR4 - 14:EnvironmentE3 615.233 127.284 228.000 4.834 2.46e-06 ***
## GenotypeR4 - 6:EnvironmentE3 -284.750 127.284 228.000 -2.237 0.026246 *
## GenotypeR4 - 8:EnvironmentE3 -343.250 127.284 228.000 -2.697 0.007525 **
## GenotypeSC1:EnvironmentE3 -156.417 127.284 228.000 -1.229 0.220384
## GenotypeSC2:EnvironmentE3 -282.667 127.284 228.000 -2.221 0.027351 *
## GenotypeSC3:EnvironmentE3 105.750 127.284 228.000 0.831 0.406945
## GenotypeSC4:EnvironmentE3 10.583 127.284 228.000 0.083 0.933807
## GenotypeR1 - 20:EnvironmentE4 -408.667 127.284 228.000 -3.211 0.001515 **
## GenotypeR2 - 10:EnvironmentE4 -690.833 127.284 228.000 -5.427 1.46e-07 ***
## GenotypeR2 - 15:EnvironmentE4 508.833 127.284 228.000 3.998 8.64e-05 ***
## GenotypeR3 - 1:EnvironmentE4 -114.583 127.284 228.000 -0.900 0.368954
## GenotypeR3 - 10:EnvironmentE4 -444.500 127.284 228.000 -3.492 0.000575 ***
## GenotypeR3 - 14:EnvironmentE4 -792.667 127.284 228.000 -6.228 2.26e-09 ***
## GenotypeR3 - 17:EnvironmentE4 -594.000 127.284 228.000 -4.667 5.22e-06 ***
## GenotypeR3 - 19:EnvironmentE4 -298.667 127.284 228.000 -2.346 0.019810 *
## GenotypeR3 - 4:EnvironmentE4 -363.500 127.284 228.000 -2.856 0.004689 **
## GenotypeR3 - 7:EnvironmentE4 -367.583 127.284 228.000 -2.888 0.004251 **
## GenotypeR3 - 9:EnvironmentE4 -282.667 127.284 228.000 -2.221 0.027351 *
## GenotypeR4 - 1:EnvironmentE4 -585.333 127.284 228.000 -4.599 7.05e-06 ***
## GenotypeR4 - 14:EnvironmentE4 -61.850 127.284 228.000 -0.486 0.627490
## GenotypeR4 - 6:EnvironmentE4 -555.833 127.284 228.000 -4.367 1.91e-05 ***
## GenotypeR4 - 8:EnvironmentE4 -769.833 127.284 228.000 -6.048 5.94e-09 ***
## GenotypeSC1:EnvironmentE4 -550.667 127.284 228.000 -4.326 2.27e-05 ***
## GenotypeSC2:EnvironmentE4 -617.583 127.284 228.000 -4.852 2.27e-06 ***
## GenotypeSC3:EnvironmentE4 -547.833 127.284 228.000 -4.304 2.49e-05 ***
## GenotypeSC4:EnvironmentE4 -58.333 127.284 228.000 -0.458 0.647179
## GenotypeR1 - 20:EnvironmentE5 222.833 127.284 228.000 1.751 0.081346 .
## GenotypeR2 - 10:EnvironmentE5 -618.833 127.284 228.000 -4.862 2.17e-06 ***
## GenotypeR2 - 15:EnvironmentE5 554.833 127.284 228.000 4.359 1.98e-05 ***
## GenotypeR3 - 1:EnvironmentE5 -145.167 127.284 228.000 -1.140 0.255277
## GenotypeR3 - 10:EnvironmentE5 -6.000 127.284 228.000 -0.047 0.962444
## GenotypeR3 - 14:EnvironmentE5 -424.167 127.284 228.000 -3.332 0.001004 **
## GenotypeR3 - 17:EnvironmentE5 25.500 127.284 228.000 0.200 0.841394
## GenotypeR3 - 19:EnvironmentE5 -69.167 127.284 228.000 -0.543 0.587382
## GenotypeR3 - 4:EnvironmentE5 -31.917 127.284 228.000 -0.251 0.802232
## GenotypeR3 - 7:EnvironmentE5 223.917 127.284 228.000 1.759 0.079887 .
## GenotypeR3 - 9:EnvironmentE5 228.833 127.284 228.000 1.798 0.073529 .
## GenotypeR4 - 1:EnvironmentE5 -258.833 127.284 228.000 -2.034 0.043159 *
## GenotypeR4 - 14:EnvironmentE5 151.817 127.284 228.000 1.193 0.234211
## GenotypeR4 - 6:EnvironmentE5 9.167 127.284 228.000 0.072 0.942651
## GenotypeR4 - 8:EnvironmentE5 -705.667 127.284 228.000 -5.544 8.15e-08 ***
## GenotypeSC1:EnvironmentE5 -182.667 127.284 228.000 -1.435 0.152626
## GenotypeSC2:EnvironmentE5 -345.583 127.284 228.000 -2.715 0.007134 **
## GenotypeSC3:EnvironmentE5 -356.333 127.284 228.000 -2.800 0.005557 **
## GenotypeSC4:EnvironmentE5 -24.333 127.284 228.000 -0.191 0.848560
## GenotypeR1 - 20:EnvironmentE6 372.083 127.284 228.000 2.923 0.003813 **
## GenotypeR2 - 10:EnvironmentE6 -63.833 127.284 228.000 -0.502 0.616501
## GenotypeR2 - 15:EnvironmentE6 356.333 127.284 228.000 2.800 0.005557 **
## GenotypeR3 - 1:EnvironmentE6 -48.833 127.284 228.000 -0.384 0.701591
## GenotypeR3 - 10:EnvironmentE6 476.833 127.284 228.000 3.746 0.000227 ***
## GenotypeR3 - 14:EnvironmentE6 -404.833 127.284 228.000 -3.181 0.001674 **
## GenotypeR3 - 17:EnvironmentE6 27.833 127.284 228.000 0.219 0.827102
## GenotypeR3 - 19:EnvironmentE6 750.833 127.284 228.000 5.899 1.31e-08 ***
## GenotypeR3 - 4:EnvironmentE6 315.833 127.284 228.000 2.481 0.013812 *
## GenotypeR3 - 7:EnvironmentE6 -95.583 127.284 228.000 -0.751 0.453460
## GenotypeR3 - 9:EnvironmentE6 174.833 127.284 228.000 1.374 0.170925
## GenotypeR4 - 1:EnvironmentE6 -429.333 127.284 228.000 -3.373 0.000873 ***
## GenotypeR4 - 14:EnvironmentE6 242.817 127.284 228.000 1.908 0.057690 .
## GenotypeR4 - 6:EnvironmentE6 229.667 127.284 228.000 1.804 0.072494 .
## GenotypeR4 - 8:EnvironmentE6 -361.083 127.284 228.000 -2.837 0.004967 **
## GenotypeSC1:EnvironmentE6 -298.667 127.284 228.000 -2.346 0.019810 *
## GenotypeSC2:EnvironmentE6 -377.583 127.284 228.000 -2.966 0.003333 **
## GenotypeSC3:EnvironmentE6 -387.333 127.284 228.000 -3.043 0.002616 **
## GenotypeSC4:EnvironmentE6 -210.500 127.284 228.000 -1.654 0.099548 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Correlation matrix not shown by default, as p = 120 > 12.
## Use print(x, correlation=TRUE) or
## vcov(x) if you need it# Uji fixed effect
anova(model_biomass)## Type III Analysis of Variance Table with Satterthwaite's method
## Sum Sq Mean Sq NumDF DenDF F value Pr(>F)
## Genotype 2259939 118944 19 228 9.7889 < 2.2e-16 ***
## Environment 11154242 2230848 5 12 183.5951 6.656e-11 ***
## Genotype:Environment 12141752 127808 95 228 10.5184 < 2.2e-16 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1# Random effect
VarCorr(model_biomass)## Groups Name Std.Dev.
## Environment:Replications (Intercept) 30.31
## Residual 110.23# Singularity
isSingular(model_biomass)## [1] FALSE================================================================
25. EMMEANS BIOMASS
================================================================
emm_biomass <- emmeans(
model_biomass,
~ Genotype | Environment
)
emm_biomass## Environment = E1:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 930 66 219 799.58 1060
## R1 - 20 873 66 219 743.25 1003
## R2 - 10 1526 66 219 1396.42 1657
## R2 - 15 640 66 219 509.75 770
## R3 - 1 1163 66 219 1032.92 1293
## R3 - 10 880 66 219 749.58 1010
## R3 - 14 1433 66 219 1303.25 1563
## R3 - 17 1069 66 219 938.58 1199
## R3 - 19 864 66 219 734.25 994
## R3 - 4 1153 66 219 1022.75 1283
## R3 - 7 999 66 219 869.17 1129
## R3 - 9 864 66 219 733.75 994
## R4 - 1 1505 66 219 1374.92 1635
## R4 - 14 737 66 219 607.27 867
## R4 - 6 1080 66 219 950.42 1211
## R4 - 8 1512 66 219 1381.42 1642
## SC1 1269 66 219 1139.25 1399
## SC2 1271 66 219 1141.17 1401
## SC3 1315 66 219 1184.92 1445
## SC4 1145 66 219 1015.08 1275
##
## Environment = E2:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 762 66 219 632.08 892
## R1 - 20 808 66 219 677.67 938
## R2 - 10 1190 66 219 1060.07 1320
## R2 - 15 642 66 219 511.92 772
## R3 - 1 693 66 219 562.75 823
## R3 - 10 917 66 219 787.17 1047
## R3 - 14 537 66 219 406.92 667
## R3 - 17 543 66 219 412.92 673
## R3 - 19 1053 66 219 922.92 1183
## R3 - 4 929 66 219 799.25 1059
## R3 - 7 908 66 219 778.08 1038
## R3 - 9 940 66 219 810.17 1070
## R4 - 1 1330 66 219 1199.42 1460
## R4 - 14 856 66 219 725.92 986
## R4 - 6 614 66 219 483.58 744
## R4 - 8 810 66 219 680.07 940
## SC1 792 66 219 661.58 922
## SC2 527 66 219 397.08 657
## SC3 780 66 219 650.42 911
## SC4 622 66 219 491.58 752
##
## Environment = E3:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 595 66 219 465.33 725
## R1 - 20 825 66 219 694.92 955
## R2 - 10 667 66 219 536.92 797
## R2 - 15 1008 66 219 877.42 1138
## R3 - 1 944 66 219 813.92 1074
## R3 - 10 952 66 219 821.92 1082
## R3 - 14 832 66 219 701.67 962
## R3 - 17 927 66 219 796.50 1057
## R3 - 19 774 66 219 643.75 904
## R3 - 4 931 66 219 801.17 1061
## R3 - 7 1014 66 219 883.58 1144
## R3 - 9 771 66 219 640.58 901
## R4 - 1 549 66 219 419.25 679
## R4 - 14 1018 66 219 888.25 1148
## R4 - 6 462 66 219 331.42 592
## R4 - 8 834 66 219 703.92 964
## SC1 779 66 219 648.58 909
## SC2 654 66 219 524.25 784
## SC3 1086 66 219 956.42 1217
## SC4 822 66 219 691.42 952
##
## Environment = E4:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 695 66 219 564.92 825
## R1 - 20 230 66 219 99.92 360
## R2 - 10 601 66 219 470.92 731
## R2 - 15 914 66 219 783.92 1044
## R3 - 1 814 66 219 683.67 944
## R3 - 10 200 66 219 70.42 331
## R3 - 14 406 66 219 275.92 536
## R3 - 17 240 66 219 109.92 370
## R3 - 19 331 66 219 200.92 461
## R3 - 4 555 66 219 424.58 685
## R3 - 7 397 66 219 266.92 527
## R3 - 9 346 66 219 216.42 477
## R4 - 1 685 66 219 554.92 815
## R4 - 14 441 66 219 310.75 571
## R4 - 6 290 66 219 159.92 420
## R4 - 8 507 66 219 376.92 637
## SC1 484 66 219 353.92 614
## SC2 419 66 219 288.92 549
## SC3 532 66 219 402.42 663
## SC4 852 66 219 722.08 982
##
## Environment = E5:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 279 66 219 148.92 409
## R1 - 20 446 66 219 315.42 576
## R2 - 10 257 66 219 126.92 387
## R2 - 15 544 66 219 413.92 674
## R3 - 1 367 66 219 237.08 497
## R3 - 10 223 66 219 92.92 353
## R3 - 14 358 66 219 228.42 489
## R3 - 17 444 66 219 313.42 574
## R3 - 19 144 66 219 14.42 275
## R3 - 4 470 66 219 340.17 600
## R3 - 7 572 66 219 442.42 703
## R3 - 9 442 66 219 311.92 572
## R4 - 1 596 66 219 465.42 726
## R4 - 14 238 66 219 108.42 369
## R4 - 6 439 66 219 308.92 569
## R4 - 8 155 66 219 25.08 285
## SC1 436 66 219 305.92 566
## SC2 275 66 219 144.92 405
## SC3 308 66 219 177.92 438
## SC4 470 66 219 340.08 600
##
## Environment = E6:
## Genotype emmean SE df lower.CL upper.CL
## R1 - 1 141 66 219 10.92 271
## R1 - 20 457 66 219 326.67 587
## R2 - 10 674 66 219 543.92 804
## R2 - 15 208 66 219 77.42 338
## R3 - 1 326 66 219 195.42 456
## R3 - 10 568 66 219 437.75 698
## R3 - 14 240 66 219 109.75 370
## R3 - 17 308 66 219 177.75 438
## R3 - 19 826 66 219 696.42 957
## R3 - 4 680 66 219 549.92 810
## R3 - 7 115 66 219 -15.08 245
## R3 - 9 250 66 219 119.92 380
## R4 - 1 287 66 219 156.92 417
## R4 - 14 192 66 219 61.42 322
## R4 - 6 522 66 219 391.42 652
## R4 - 8 362 66 219 231.67 492
## SC1 182 66 219 51.92 312
## SC2 105 66 219 -25.08 235
## SC3 139 66 219 8.92 269
## SC4 146 66 219 15.92 276
##
## Degrees-of-freedom method: kenward-roger
## Confidence level used: 0.95================================================================
26. POST-HOC BIOMASS
================================================================
pairs(
emm_biomass,
adjust = "tukey"
)## Environment = E1:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) 56.3333 90 228 0.626 1.0000
## (R1 - 1) - (R2 - 10) -596.8333 90 228 -6.631 <0.0001
## (R1 - 1) - (R2 - 15) 289.8333 90 228 3.220 0.1420
## (R1 - 1) - (R3 - 1) -233.3333 90 228 -2.592 0.5142
## (R1 - 1) - (R3 - 10) 50.0000 90 228 0.556 1.0000
## (R1 - 1) - (R3 - 14) -503.6667 90 228 -5.596 <0.0001
## (R1 - 1) - (R3 - 17) -139.0000 90 228 -1.544 0.9922
## (R1 - 1) - (R3 - 19) 65.3333 90 228 0.726 1.0000
## (R1 - 1) - (R3 - 4) -223.1667 90 228 -2.480 0.6008
## (R1 - 1) - (R3 - 7) -69.5833 90 228 -0.773 1.0000
## (R1 - 1) - (R3 - 9) 65.8333 90 228 0.731 1.0000
## (R1 - 1) - (R4 - 1) -575.3333 90 228 -6.392 <0.0001
## (R1 - 1) - (R4 - 14) 192.3167 90 228 2.137 0.8340
## (R1 - 1) - (R4 - 6) -150.8333 90 228 -1.676 0.9807
## (R1 - 1) - (R4 - 8) -581.8333 90 228 -6.465 <0.0001
## (R1 - 1) - SC1 -339.6667 90 228 -3.774 0.0273
## (R1 - 1) - SC2 -341.5833 90 228 -3.795 0.0254
## (R1 - 1) - SC3 -385.3333 90 228 -4.281 0.0043
## (R1 - 1) - SC4 -215.5000 90 228 -2.394 0.6650
## (R1 - 20) - (R2 - 10) -653.1667 90 228 -7.257 <0.0001
## (R1 - 20) - (R2 - 15) 233.5000 90 228 2.594 0.5128
## (R1 - 20) - (R3 - 1) -289.6667 90 228 -3.218 0.1426
## (R1 - 20) - (R3 - 10) -6.3333 90 228 -0.070 1.0000
## (R1 - 20) - (R3 - 14) -560.0000 90 228 -6.222 <0.0001
## (R1 - 20) - (R3 - 17) -195.3333 90 228 -2.170 0.8151
## (R1 - 20) - (R3 - 19) 9.0000 90 228 0.100 1.0000
## (R1 - 20) - (R3 - 4) -279.5000 90 228 -3.105 0.1889
## (R1 - 20) - (R3 - 7) -125.9167 90 228 -1.399 0.9977
## (R1 - 20) - (R3 - 9) 9.5000 90 228 0.106 1.0000
## (R1 - 20) - (R4 - 1) -631.6667 90 228 -7.018 <0.0001
## (R1 - 20) - (R4 - 14) 135.9833 90 228 1.511 0.9940
## (R1 - 20) - (R4 - 6) -207.1667 90 228 -2.302 0.7313
## (R1 - 20) - (R4 - 8) -638.1667 90 228 -7.090 <0.0001
## (R1 - 20) - SC1 -396.0000 90 228 -4.400 0.0027
## (R1 - 20) - SC2 -397.9167 90 228 -4.421 0.0025
## (R1 - 20) - SC3 -441.6667 90 228 -4.907 0.0003
## (R1 - 20) - SC4 -271.8333 90 228 -3.020 0.2303
## (R2 - 10) - (R2 - 15) 886.6667 90 228 9.851 <0.0001
## (R2 - 10) - (R3 - 1) 363.5000 90 228 4.039 0.0108
## (R2 - 10) - (R3 - 10) 646.8333 90 228 7.187 <0.0001
## (R2 - 10) - (R3 - 14) 93.1667 90 228 1.035 1.0000
## (R2 - 10) - (R3 - 17) 457.8333 90 228 5.087 0.0001
## (R2 - 10) - (R3 - 19) 662.1667 90 228 7.357 <0.0001
## (R2 - 10) - (R3 - 4) 373.6667 90 228 4.152 0.0071
## (R2 - 10) - (R3 - 7) 527.2500 90 228 5.858 <0.0001
## (R2 - 10) - (R3 - 9) 662.6667 90 228 7.363 <0.0001
## (R2 - 10) - (R4 - 1) 21.5000 90 228 0.239 1.0000
## (R2 - 10) - (R4 - 14) 789.1500 90 228 8.768 <0.0001
## (R2 - 10) - (R4 - 6) 446.0000 90 228 4.955 0.0002
## (R2 - 10) - (R4 - 8) 15.0000 90 228 0.167 1.0000
## (R2 - 10) - SC1 257.1667 90 228 2.857 0.3252
## (R2 - 10) - SC2 255.2500 90 228 2.836 0.3390
## (R2 - 10) - SC3 211.5000 90 228 2.350 0.6974
## (R2 - 10) - SC4 381.3333 90 228 4.237 0.0051
## (R2 - 15) - (R3 - 1) -523.1667 90 228 -5.813 <0.0001
## (R2 - 15) - (R3 - 10) -239.8333 90 228 -2.665 0.4597
## (R2 - 15) - (R3 - 14) -793.5000 90 228 -8.816 <0.0001
## (R2 - 15) - (R3 - 17) -428.8333 90 228 -4.765 0.0006
## (R2 - 15) - (R3 - 19) -224.5000 90 228 -2.494 0.5895
## (R2 - 15) - (R3 - 4) -513.0000 90 228 -5.700 <0.0001
## (R2 - 15) - (R3 - 7) -359.4167 90 228 -3.993 0.0127
## (R2 - 15) - (R3 - 9) -224.0000 90 228 -2.489 0.5937
## (R2 - 15) - (R4 - 1) -865.1667 90 228 -9.613 <0.0001
## (R2 - 15) - (R4 - 14) -97.5167 90 228 -1.083 0.9999
## (R2 - 15) - (R4 - 6) -440.6667 90 228 -4.896 0.0003
## (R2 - 15) - (R4 - 8) -871.6667 90 228 -9.685 <0.0001
## (R2 - 15) - SC1 -629.5000 90 228 -6.994 <0.0001
## (R2 - 15) - SC2 -631.4167 90 228 -7.015 <0.0001
## (R2 - 15) - SC3 -675.1667 90 228 -7.502 <0.0001
## (R2 - 15) - SC4 -505.3333 90 228 -5.615 <0.0001
## (R3 - 1) - (R3 - 10) 283.3333 90 228 3.148 0.1703
## (R3 - 1) - (R3 - 14) -270.3333 90 228 -3.004 0.2391
## (R3 - 1) - (R3 - 17) 94.3333 90 228 1.048 1.0000
## (R3 - 1) - (R3 - 19) 298.6667 90 228 3.318 0.1094
## (R3 - 1) - (R3 - 4) 10.1667 90 228 0.113 1.0000
## (R3 - 1) - (R3 - 7) 163.7500 90 228 1.819 0.9561
## (R3 - 1) - (R3 - 9) 299.1667 90 228 3.324 0.1077
## (R3 - 1) - (R4 - 1) -342.0000 90 228 -3.800 0.0250
## (R3 - 1) - (R4 - 14) 425.6500 90 228 4.729 0.0007
## (R3 - 1) - (R4 - 6) 82.5000 90 228 0.917 1.0000
## (R3 - 1) - (R4 - 8) -348.5000 90 228 -3.872 0.0195
## (R3 - 1) - SC1 -106.3333 90 228 -1.181 0.9998
## (R3 - 1) - SC2 -108.2500 90 228 -1.203 0.9997
## (R3 - 1) - SC3 -152.0000 90 228 -1.689 0.9791
## (R3 - 1) - SC4 17.8333 90 228 0.198 1.0000
## (R3 - 10) - (R3 - 14) -553.6667 90 228 -6.152 <0.0001
## (R3 - 10) - (R3 - 17) -189.0000 90 228 -2.100 0.8535
## (R3 - 10) - (R3 - 19) 15.3333 90 228 0.170 1.0000
## (R3 - 10) - (R3 - 4) -273.1667 90 228 -3.035 0.2227
## (R3 - 10) - (R3 - 7) -119.5833 90 228 -1.329 0.9988
## (R3 - 10) - (R3 - 9) 15.8333 90 228 0.176 1.0000
## (R3 - 10) - (R4 - 1) -625.3333 90 228 -6.948 <0.0001
## (R3 - 10) - (R4 - 14) 142.3167 90 228 1.581 0.9898
## (R3 - 10) - (R4 - 6) -200.8333 90 228 -2.231 0.7779
## (R3 - 10) - (R4 - 8) -631.8333 90 228 -7.020 <0.0001
## (R3 - 10) - SC1 -389.6667 90 228 -4.329 0.0036
## (R3 - 10) - SC2 -391.5833 90 228 -4.351 0.0033
## (R3 - 10) - SC3 -435.3333 90 228 -4.837 0.0004
## (R3 - 10) - SC4 -265.5000 90 228 -2.950 0.2688
## (R3 - 14) - (R3 - 17) 364.6667 90 228 4.052 0.0103
## (R3 - 14) - (R3 - 19) 569.0000 90 228 6.322 <0.0001
## (R3 - 14) - (R3 - 4) 280.5000 90 228 3.117 0.1839
## (R3 - 14) - (R3 - 7) 434.0833 90 228 4.823 0.0004
## (R3 - 14) - (R3 - 9) 569.5000 90 228 6.328 <0.0001
## (R3 - 14) - (R4 - 1) -71.6667 90 228 -0.796 1.0000
## (R3 - 14) - (R4 - 14) 695.9833 90 228 7.733 <0.0001
## (R3 - 14) - (R4 - 6) 352.8333 90 228 3.920 0.0165
## (R3 - 14) - (R4 - 8) -78.1667 90 228 -0.868 1.0000
## (R3 - 14) - SC1 164.0000 90 228 1.822 0.9555
## (R3 - 14) - SC2 162.0833 90 228 1.801 0.9602
## (R3 - 14) - SC3 118.3333 90 228 1.315 0.9990
## (R3 - 14) - SC4 288.1667 90 228 3.202 0.1489
## (R3 - 17) - (R3 - 19) 204.3333 90 228 2.270 0.7526
## (R3 - 17) - (R3 - 4) -84.1667 90 228 -0.935 1.0000
## (R3 - 17) - (R3 - 7) 69.4167 90 228 0.771 1.0000
## (R3 - 17) - (R3 - 9) 204.8333 90 228 2.276 0.7489
## (R3 - 17) - (R4 - 1) -436.3333 90 228 -4.848 0.0004
## (R3 - 17) - (R4 - 14) 331.3167 90 228 3.681 0.0370
## (R3 - 17) - (R4 - 6) -11.8333 90 228 -0.131 1.0000
## (R3 - 17) - (R4 - 8) -442.8333 90 228 -4.920 0.0003
## (R3 - 17) - SC1 -200.6667 90 228 -2.230 0.7791
## (R3 - 17) - SC2 -202.5833 90 228 -2.251 0.7654
## (R3 - 17) - SC3 -246.3333 90 228 -2.737 0.4069
## (R3 - 17) - SC4 -76.5000 90 228 -0.850 1.0000
## (R3 - 19) - (R3 - 4) -288.5000 90 228 -3.205 0.1475
## (R3 - 19) - (R3 - 7) -134.9167 90 228 -1.499 0.9945
## (R3 - 19) - (R3 - 9) 0.5000 90 228 0.006 1.0000
## (R3 - 19) - (R4 - 1) -640.6667 90 228 -7.118 <0.0001
## (R3 - 19) - (R4 - 14) 126.9833 90 228 1.411 0.9974
## (R3 - 19) - (R4 - 6) -216.1667 90 228 -2.402 0.6595
## (R3 - 19) - (R4 - 8) -647.1667 90 228 -7.190 <0.0001
## (R3 - 19) - SC1 -405.0000 90 228 -4.500 0.0018
## (R3 - 19) - SC2 -406.9167 90 228 -4.521 0.0016
## (R3 - 19) - SC3 -450.6667 90 228 -5.007 0.0002
## (R3 - 19) - SC4 -280.8333 90 228 -3.120 0.1823
## (R3 - 4) - (R3 - 7) 153.5833 90 228 1.706 0.9767
## (R3 - 4) - (R3 - 9) 289.0000 90 228 3.211 0.1454
## (R3 - 4) - (R4 - 1) -352.1667 90 228 -3.913 0.0169
## (R3 - 4) - (R4 - 14) 415.4833 90 228 4.616 0.0011
## (R3 - 4) - (R4 - 6) 72.3333 90 228 0.804 1.0000
## (R3 - 4) - (R4 - 8) -358.6667 90 228 -3.985 0.0131
## (R3 - 4) - SC1 -116.5000 90 228 -1.294 0.9992
## (R3 - 4) - SC2 -118.4167 90 228 -1.316 0.9990
## (R3 - 4) - SC3 -162.1667 90 228 -1.802 0.9600
## (R3 - 4) - SC4 7.6667 90 228 0.085 1.0000
## (R3 - 7) - (R3 - 9) 135.4167 90 228 1.505 0.9943
## (R3 - 7) - (R4 - 1) -505.7500 90 228 -5.619 <0.0001
## (R3 - 7) - (R4 - 14) 261.9000 90 228 2.910 0.2924
## (R3 - 7) - (R4 - 6) -81.2500 90 228 -0.903 1.0000
## (R3 - 7) - (R4 - 8) -512.2500 90 228 -5.691 <0.0001
## (R3 - 7) - SC1 -270.0833 90 228 -3.001 0.2406
## (R3 - 7) - SC2 -272.0000 90 228 -3.022 0.2294
## (R3 - 7) - SC3 -315.7500 90 228 -3.508 0.0635
## (R3 - 7) - SC4 -145.9167 90 228 -1.621 0.9865
## (R3 - 9) - (R4 - 1) -641.1667 90 228 -7.124 <0.0001
## (R3 - 9) - (R4 - 14) 126.4833 90 228 1.405 0.9975
## (R3 - 9) - (R4 - 6) -216.6667 90 228 -2.407 0.6554
## (R3 - 9) - (R4 - 8) -647.6667 90 228 -7.196 <0.0001
## (R3 - 9) - SC1 -405.5000 90 228 -4.505 0.0017
## (R3 - 9) - SC2 -407.4167 90 228 -4.527 0.0016
## (R3 - 9) - SC3 -451.1667 90 228 -5.013 0.0002
## (R3 - 9) - SC4 -281.3333 90 228 -3.126 0.1799
## (R4 - 1) - (R4 - 14) 767.6500 90 228 8.529 <0.0001
## (R4 - 1) - (R4 - 6) 424.5000 90 228 4.716 0.0007
## (R4 - 1) - (R4 - 8) -6.5000 90 228 -0.072 1.0000
## (R4 - 1) - SC1 235.6667 90 228 2.618 0.4945
## (R4 - 1) - SC2 233.7500 90 228 2.597 0.5107
## (R4 - 1) - SC3 190.0000 90 228 2.111 0.8478
## (R4 - 1) - SC4 359.8333 90 228 3.998 0.0125
## (R4 - 14) - (R4 - 6) -343.1500 90 228 -3.813 0.0239
## (R4 - 14) - (R4 - 8) -774.1500 90 228 -8.601 <0.0001
## (R4 - 14) - SC1 -531.9833 90 228 -5.911 <0.0001
## (R4 - 14) - SC2 -533.9000 90 228 -5.932 <0.0001
## (R4 - 14) - SC3 -577.6500 90 228 -6.418 <0.0001
## (R4 - 14) - SC4 -407.8167 90 228 -4.531 0.0016
## (R4 - 6) - (R4 - 8) -431.0000 90 228 -4.789 0.0005
## (R4 - 6) - SC1 -188.8333 90 228 -2.098 0.8545
## (R4 - 6) - SC2 -190.7500 90 228 -2.119 0.8434
## (R4 - 6) - SC3 -234.5000 90 228 -2.605 0.5043
## (R4 - 6) - SC4 -64.6667 90 228 -0.718 1.0000
## (R4 - 8) - SC1 242.1667 90 228 2.691 0.4405
## (R4 - 8) - SC2 240.2500 90 228 2.669 0.4562
## (R4 - 8) - SC3 196.5000 90 228 2.183 0.8075
## (R4 - 8) - SC4 366.3333 90 228 4.070 0.0096
## SC1 - SC2 -1.9167 90 228 -0.021 1.0000
## SC1 - SC3 -45.6667 90 228 -0.507 1.0000
## SC1 - SC4 124.1667 90 228 1.380 0.9980
## SC2 - SC3 -43.7500 90 228 -0.486 1.0000
## SC2 - SC4 126.0833 90 228 1.401 0.9976
## SC3 - SC4 169.8333 90 228 1.887 0.9386
##
## Environment = E2:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) -45.5833 90 228 -0.506 1.0000
## (R1 - 1) - (R2 - 10) -427.9833 90 228 -4.755 0.0006
## (R1 - 1) - (R2 - 15) 120.1667 90 228 1.335 0.9987
## (R1 - 1) - (R3 - 1) 69.3333 90 228 0.770 1.0000
## (R1 - 1) - (R3 - 10) -155.0833 90 228 -1.723 0.9743
## (R1 - 1) - (R3 - 14) 225.1667 90 228 2.502 0.5838
## (R1 - 1) - (R3 - 17) 219.1667 90 228 2.435 0.6346
## (R1 - 1) - (R3 - 19) -290.8333 90 228 -3.231 0.1379
## (R1 - 1) - (R3 - 4) -167.1667 90 228 -1.857 0.9468
## (R1 - 1) - (R3 - 7) -146.0000 90 228 -1.622 0.9864
## (R1 - 1) - (R3 - 9) -178.0833 90 228 -1.979 0.9078
## (R1 - 1) - (R4 - 1) -567.3333 90 228 -6.303 <0.0001
## (R1 - 1) - (R4 - 14) -93.8333 90 228 -1.043 1.0000
## (R1 - 1) - (R4 - 6) 148.5000 90 228 1.650 0.9837
## (R1 - 1) - (R4 - 8) -47.9833 90 228 -0.533 1.0000
## (R1 - 1) - SC1 -29.5000 90 228 -0.328 1.0000
## (R1 - 1) - SC2 235.0000 90 228 2.611 0.5001
## (R1 - 1) - SC3 -18.3333 90 228 -0.204 1.0000
## (R1 - 1) - SC4 140.5000 90 228 1.561 0.9912
## (R1 - 20) - (R2 - 10) -382.4000 90 228 -4.249 0.0049
## (R1 - 20) - (R2 - 15) 165.7500 90 228 1.842 0.9508
## (R1 - 20) - (R3 - 1) 114.9167 90 228 1.277 0.9993
## (R1 - 20) - (R3 - 10) -109.5000 90 228 -1.217 0.9996
## (R1 - 20) - (R3 - 14) 270.7500 90 228 3.008 0.2367
## (R1 - 20) - (R3 - 17) 264.7500 90 228 2.942 0.2736
## (R1 - 20) - (R3 - 19) -245.2500 90 228 -2.725 0.4156
## (R1 - 20) - (R3 - 4) -121.5833 90 228 -1.351 0.9985
## (R1 - 20) - (R3 - 7) -100.4167 90 228 -1.116 0.9999
## (R1 - 20) - (R3 - 9) -132.5000 90 228 -1.472 0.9956
## (R1 - 20) - (R4 - 1) -521.7500 90 228 -5.797 <0.0001
## (R1 - 20) - (R4 - 14) -48.2500 90 228 -0.536 1.0000
## (R1 - 20) - (R4 - 6) 194.0833 90 228 2.156 0.8231
## (R1 - 20) - (R4 - 8) -2.4000 90 228 -0.027 1.0000
## (R1 - 20) - SC1 16.0833 90 228 0.179 1.0000
## (R1 - 20) - SC2 280.5833 90 228 3.117 0.1835
## (R1 - 20) - SC3 27.2500 90 228 0.303 1.0000
## (R1 - 20) - SC4 186.0833 90 228 2.068 0.8696
## (R2 - 10) - (R2 - 15) 548.1500 90 228 6.090 <0.0001
## (R2 - 10) - (R3 - 1) 497.3167 90 228 5.526 <0.0001
## (R2 - 10) - (R3 - 10) 272.9000 90 228 3.032 0.2242
## (R2 - 10) - (R3 - 14) 653.1500 90 228 7.257 <0.0001
## (R2 - 10) - (R3 - 17) 647.1500 90 228 7.190 <0.0001
## (R2 - 10) - (R3 - 19) 137.1500 90 228 1.524 0.9933
## (R2 - 10) - (R3 - 4) 260.8167 90 228 2.898 0.2997
## (R2 - 10) - (R3 - 7) 281.9833 90 228 3.133 0.1767
## (R2 - 10) - (R3 - 9) 249.9000 90 228 2.777 0.3791
## (R2 - 10) - (R4 - 1) -139.3500 90 228 -1.548 0.9920
## (R2 - 10) - (R4 - 14) 334.1500 90 228 3.713 0.0334
## (R2 - 10) - (R4 - 6) 576.4833 90 228 6.405 <0.0001
## (R2 - 10) - (R4 - 8) 380.0000 90 228 4.222 0.0054
## (R2 - 10) - SC1 398.4833 90 228 4.427 0.0024
## (R2 - 10) - SC2 662.9833 90 228 7.366 <0.0001
## (R2 - 10) - SC3 409.6500 90 228 4.551 0.0014
## (R2 - 10) - SC4 568.4833 90 228 6.316 <0.0001
## (R2 - 15) - (R3 - 1) -50.8333 90 228 -0.565 1.0000
## (R2 - 15) - (R3 - 10) -275.2500 90 228 -3.058 0.2112
## (R2 - 15) - (R3 - 14) 105.0000 90 228 1.167 0.9998
## (R2 - 15) - (R3 - 17) 99.0000 90 228 1.100 0.9999
## (R2 - 15) - (R3 - 19) -411.0000 90 228 -4.566 0.0013
## (R2 - 15) - (R3 - 4) -287.3333 90 228 -3.192 0.1524
## (R2 - 15) - (R3 - 7) -266.1667 90 228 -2.957 0.2646
## (R2 - 15) - (R3 - 9) -298.2500 90 228 -3.314 0.1108
## (R2 - 15) - (R4 - 1) -687.5000 90 228 -7.639 <0.0001
## (R2 - 15) - (R4 - 14) -214.0000 90 228 -2.378 0.6772
## (R2 - 15) - (R4 - 6) 28.3333 90 228 0.315 1.0000
## (R2 - 15) - (R4 - 8) -168.1500 90 228 -1.868 0.9439
## (R2 - 15) - SC1 -149.6667 90 228 -1.663 0.9823
## (R2 - 15) - SC2 114.8333 90 228 1.276 0.9993
## (R2 - 15) - SC3 -138.5000 90 228 -1.539 0.9925
## (R2 - 15) - SC4 20.3333 90 228 0.226 1.0000
## (R3 - 1) - (R3 - 10) -224.4167 90 228 -2.493 0.5902
## (R3 - 1) - (R3 - 14) 155.8333 90 228 1.731 0.9730
## (R3 - 1) - (R3 - 17) 149.8333 90 228 1.665 0.9821
## (R3 - 1) - (R3 - 19) -360.1667 90 228 -4.002 0.0123
## (R3 - 1) - (R3 - 4) -236.5000 90 228 -2.628 0.4875
## (R3 - 1) - (R3 - 7) -215.3333 90 228 -2.393 0.6664
## (R3 - 1) - (R3 - 9) -247.4167 90 228 -2.749 0.3984
## (R3 - 1) - (R4 - 1) -636.6667 90 228 -7.074 <0.0001
## (R3 - 1) - (R4 - 14) -163.1667 90 228 -1.813 0.9576
## (R3 - 1) - (R4 - 6) 79.1667 90 228 0.880 1.0000
## (R3 - 1) - (R4 - 8) -117.3167 90 228 -1.303 0.9991
## (R3 - 1) - SC1 -98.8333 90 228 -1.098 0.9999
## (R3 - 1) - SC2 165.6667 90 228 1.841 0.9511
## (R3 - 1) - SC3 -87.6667 90 228 -0.974 1.0000
## (R3 - 1) - SC4 71.1667 90 228 0.791 1.0000
## (R3 - 10) - (R3 - 14) 380.2500 90 228 4.225 0.0053
## (R3 - 10) - (R3 - 17) 374.2500 90 228 4.158 0.0069
## (R3 - 10) - (R3 - 19) -135.7500 90 228 -1.508 0.9941
## (R3 - 10) - (R3 - 4) -12.0833 90 228 -0.134 1.0000
## (R3 - 10) - (R3 - 7) 9.0833 90 228 0.101 1.0000
## (R3 - 10) - (R3 - 9) -23.0000 90 228 -0.256 1.0000
## (R3 - 10) - (R4 - 1) -412.2500 90 228 -4.580 0.0013
## (R3 - 10) - (R4 - 14) 61.2500 90 228 0.681 1.0000
## (R3 - 10) - (R4 - 6) 303.5833 90 228 3.373 0.0940
## (R3 - 10) - (R4 - 8) 107.1000 90 228 1.190 0.9997
## (R3 - 10) - SC1 125.5833 90 228 1.395 0.9977
## (R3 - 10) - SC2 390.0833 90 228 4.334 0.0035
## (R3 - 10) - SC3 136.7500 90 228 1.519 0.9936
## (R3 - 10) - SC4 295.5833 90 228 3.284 0.1200
## (R3 - 14) - (R3 - 17) -6.0000 90 228 -0.067 1.0000
## (R3 - 14) - (R3 - 19) -516.0000 90 228 -5.733 <0.0001
## (R3 - 14) - (R3 - 4) -392.3333 90 228 -4.359 0.0032
## (R3 - 14) - (R3 - 7) -371.1667 90 228 -4.124 0.0079
## (R3 - 14) - (R3 - 9) -403.2500 90 228 -4.480 0.0019
## (R3 - 14) - (R4 - 1) -792.5000 90 228 -8.805 <0.0001
## (R3 - 14) - (R4 - 14) -319.0000 90 228 -3.544 0.0569
## (R3 - 14) - (R4 - 6) -76.6667 90 228 -0.852 1.0000
## (R3 - 14) - (R4 - 8) -273.1500 90 228 -3.035 0.2228
## (R3 - 14) - SC1 -254.6667 90 228 -2.830 0.3432
## (R3 - 14) - SC2 9.8333 90 228 0.109 1.0000
## (R3 - 14) - SC3 -243.5000 90 228 -2.705 0.4297
## (R3 - 14) - SC4 -84.6667 90 228 -0.941 1.0000
## (R3 - 17) - (R3 - 19) -510.0000 90 228 -5.666 <0.0001
## (R3 - 17) - (R3 - 4) -386.3333 90 228 -4.292 0.0041
## (R3 - 17) - (R3 - 7) -365.1667 90 228 -4.057 0.0101
## (R3 - 17) - (R3 - 9) -397.2500 90 228 -4.414 0.0025
## (R3 - 17) - (R4 - 1) -786.5000 90 228 -8.739 <0.0001
## (R3 - 17) - (R4 - 14) -313.0000 90 228 -3.478 0.0695
## (R3 - 17) - (R4 - 6) -70.6667 90 228 -0.785 1.0000
## (R3 - 17) - (R4 - 8) -267.1500 90 228 -2.968 0.2584
## (R3 - 17) - SC1 -248.6667 90 228 -2.763 0.3886
## (R3 - 17) - SC2 15.8333 90 228 0.176 1.0000
## (R3 - 17) - SC3 -237.5000 90 228 -2.639 0.4791
## (R3 - 17) - SC4 -78.6667 90 228 -0.874 1.0000
## (R3 - 19) - (R3 - 4) 123.6667 90 228 1.374 0.9981
## (R3 - 19) - (R3 - 7) 144.8333 90 228 1.609 0.9876
## (R3 - 19) - (R3 - 9) 112.7500 90 228 1.253 0.9995
## (R3 - 19) - (R4 - 1) -276.5000 90 228 -3.072 0.2045
## (R3 - 19) - (R4 - 14) 197.0000 90 228 2.189 0.8042
## (R3 - 19) - (R4 - 6) 439.3333 90 228 4.881 0.0003
## (R3 - 19) - (R4 - 8) 242.8500 90 228 2.698 0.4349
## (R3 - 19) - SC1 261.3333 90 228 2.904 0.2962
## (R3 - 19) - SC2 525.8333 90 228 5.842 <0.0001
## (R3 - 19) - SC3 272.5000 90 228 3.028 0.2265
## (R3 - 19) - SC4 431.3333 90 228 4.792 0.0005
## (R3 - 4) - (R3 - 7) 21.1667 90 228 0.235 1.0000
## (R3 - 4) - (R3 - 9) -10.9167 90 228 -0.121 1.0000
## (R3 - 4) - (R4 - 1) -400.1667 90 228 -4.446 0.0022
## (R3 - 4) - (R4 - 14) 73.3333 90 228 0.815 1.0000
## (R3 - 4) - (R4 - 6) 315.6667 90 228 3.507 0.0636
## (R3 - 4) - (R4 - 8) 119.1833 90 228 1.324 0.9989
## (R3 - 4) - SC1 137.6667 90 228 1.530 0.9930
## (R3 - 4) - SC2 402.1667 90 228 4.468 0.0020
## (R3 - 4) - SC3 148.8333 90 228 1.654 0.9833
## (R3 - 4) - SC4 307.6667 90 228 3.418 0.0826
## (R3 - 7) - (R3 - 9) -32.0833 90 228 -0.356 1.0000
## (R3 - 7) - (R4 - 1) -421.3333 90 228 -4.681 0.0008
## (R3 - 7) - (R4 - 14) 52.1667 90 228 0.580 1.0000
## (R3 - 7) - (R4 - 6) 294.5000 90 228 3.272 0.1239
## (R3 - 7) - (R4 - 8) 98.0167 90 228 1.089 0.9999
## (R3 - 7) - SC1 116.5000 90 228 1.294 0.9992
## (R3 - 7) - SC2 381.0000 90 228 4.233 0.0052
## (R3 - 7) - SC3 127.6667 90 228 1.418 0.9972
## (R3 - 7) - SC4 286.5000 90 228 3.183 0.1560
## (R3 - 9) - (R4 - 1) -389.2500 90 228 -4.325 0.0036
## (R3 - 9) - (R4 - 14) 84.2500 90 228 0.936 1.0000
## (R3 - 9) - (R4 - 6) 326.5833 90 228 3.629 0.0438
## (R3 - 9) - (R4 - 8) 130.1000 90 228 1.446 0.9965
## (R3 - 9) - SC1 148.5833 90 228 1.651 0.9836
## (R3 - 9) - SC2 413.0833 90 228 4.590 0.0012
## (R3 - 9) - SC3 159.7500 90 228 1.775 0.9654
## (R3 - 9) - SC4 318.5833 90 228 3.540 0.0577
## (R4 - 1) - (R4 - 14) 473.5000 90 228 5.261 <0.0001
## (R4 - 1) - (R4 - 6) 715.8333 90 228 7.953 <0.0001
## (R4 - 1) - (R4 - 8) 519.3500 90 228 5.770 <0.0001
## (R4 - 1) - SC1 537.8333 90 228 5.976 <0.0001
## (R4 - 1) - SC2 802.3333 90 228 8.914 <0.0001
## (R4 - 1) - SC3 549.0000 90 228 6.100 <0.0001
## (R4 - 1) - SC4 707.8333 90 228 7.865 <0.0001
## (R4 - 14) - (R4 - 6) 242.3333 90 228 2.692 0.4391
## (R4 - 14) - (R4 - 8) 45.8500 90 228 0.509 1.0000
## (R4 - 14) - SC1 64.3333 90 228 0.715 1.0000
## (R4 - 14) - SC2 328.8333 90 228 3.654 0.0404
## (R4 - 14) - SC3 75.5000 90 228 0.839 1.0000
## (R4 - 14) - SC4 234.3333 90 228 2.604 0.5057
## (R4 - 6) - (R4 - 8) -196.4833 90 228 -2.183 0.8076
## (R4 - 6) - SC1 -178.0000 90 228 -1.978 0.9082
## (R4 - 6) - SC2 86.5000 90 228 0.961 1.0000
## (R4 - 6) - SC3 -166.8333 90 228 -1.854 0.9478
## (R4 - 6) - SC4 -8.0000 90 228 -0.089 1.0000
## (R4 - 8) - SC1 18.4833 90 228 0.205 1.0000
## (R4 - 8) - SC2 282.9833 90 228 3.144 0.1720
## (R4 - 8) - SC3 29.6500 90 228 0.329 1.0000
## (R4 - 8) - SC4 188.4833 90 228 2.094 0.8565
## SC1 - SC2 264.5000 90 228 2.939 0.2753
## SC1 - SC3 11.1667 90 228 0.124 1.0000
## SC1 - SC4 170.0000 90 228 1.889 0.9381
## SC2 - SC3 -253.3333 90 228 -2.815 0.3531
## SC2 - SC4 -94.5000 90 228 -1.050 1.0000
## SC3 - SC4 158.8333 90 228 1.765 0.9673
##
## Environment = E3:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) -229.5833 90 228 -2.551 0.5461
## (R1 - 1) - (R2 - 10) -71.5833 90 228 -0.795 1.0000
## (R1 - 1) - (R2 - 15) -412.0833 90 228 -4.579 0.0013
## (R1 - 1) - (R3 - 1) -348.5833 90 228 -3.873 0.0194
## (R1 - 1) - (R3 - 10) -356.5833 90 228 -3.962 0.0142
## (R1 - 1) - (R3 - 14) -236.3333 90 228 -2.626 0.4889
## (R1 - 1) - (R3 - 17) -331.1667 90 228 -3.679 0.0372
## (R1 - 1) - (R3 - 19) -178.4167 90 228 -1.982 0.9064
## (R1 - 1) - (R3 - 4) -335.8333 90 228 -3.731 0.0314
## (R1 - 1) - (R3 - 7) -418.2500 90 228 -4.647 0.0010
## (R1 - 1) - (R3 - 9) -175.2500 90 228 -1.947 0.9194
## (R1 - 1) - (R4 - 1) 46.0833 90 228 0.512 1.0000
## (R1 - 1) - (R4 - 14) -422.9167 90 228 -4.699 0.0008
## (R1 - 1) - (R4 - 6) 133.9167 90 228 1.488 0.9950
## (R1 - 1) - (R4 - 8) -238.5833 90 228 -2.651 0.4701
## (R1 - 1) - SC1 -183.2500 90 228 -2.036 0.8841
## (R1 - 1) - SC2 -58.9167 90 228 -0.655 1.0000
## (R1 - 1) - SC3 -491.0833 90 228 -5.456 <0.0001
## (R1 - 1) - SC4 -226.0833 90 228 -2.512 0.5760
## (R1 - 20) - (R2 - 10) 158.0000 90 228 1.755 0.9690
## (R1 - 20) - (R2 - 15) -182.5000 90 228 -2.028 0.8877
## (R1 - 20) - (R3 - 1) -119.0000 90 228 -1.322 0.9989
## (R1 - 20) - (R3 - 10) -127.0000 90 228 -1.411 0.9974
## (R1 - 20) - (R3 - 14) -6.7500 90 228 -0.075 1.0000
## (R1 - 20) - (R3 - 17) -101.5833 90 228 -1.129 0.9999
## (R1 - 20) - (R3 - 19) 51.1667 90 228 0.568 1.0000
## (R1 - 20) - (R3 - 4) -106.2500 90 228 -1.181 0.9998
## (R1 - 20) - (R3 - 7) -188.6667 90 228 -2.096 0.8554
## (R1 - 20) - (R3 - 9) 54.3333 90 228 0.604 1.0000
## (R1 - 20) - (R4 - 1) 275.6667 90 228 3.063 0.2089
## (R1 - 20) - (R4 - 14) -193.3333 90 228 -2.148 0.8278
## (R1 - 20) - (R4 - 6) 363.5000 90 228 4.039 0.0108
## (R1 - 20) - (R4 - 8) -9.0000 90 228 -0.100 1.0000
## (R1 - 20) - SC1 46.3333 90 228 0.515 1.0000
## (R1 - 20) - SC2 170.6667 90 228 1.896 0.9359
## (R1 - 20) - SC3 -261.5000 90 228 -2.905 0.2951
## (R1 - 20) - SC4 3.5000 90 228 0.039 1.0000
## (R2 - 10) - (R2 - 15) -340.5000 90 228 -3.783 0.0264
## (R2 - 10) - (R3 - 1) -277.0000 90 228 -3.078 0.2018
## (R2 - 10) - (R3 - 10) -285.0000 90 228 -3.167 0.1627
## (R2 - 10) - (R3 - 14) -164.7500 90 228 -1.830 0.9535
## (R2 - 10) - (R3 - 17) -259.5833 90 228 -2.884 0.3082
## (R2 - 10) - (R3 - 19) -106.8333 90 228 -1.187 0.9997
## (R2 - 10) - (R3 - 4) -264.2500 90 228 -2.936 0.2769
## (R2 - 10) - (R3 - 7) -346.6667 90 228 -3.852 0.0209
## (R2 - 10) - (R3 - 9) -103.6667 90 228 -1.152 0.9998
## (R2 - 10) - (R4 - 1) 117.6667 90 228 1.307 0.9990
## (R2 - 10) - (R4 - 14) -351.3333 90 228 -3.904 0.0175
## (R2 - 10) - (R4 - 6) 205.5000 90 228 2.283 0.7439
## (R2 - 10) - (R4 - 8) -167.0000 90 228 -1.855 0.9473
## (R2 - 10) - SC1 -111.6667 90 228 -1.241 0.9995
## (R2 - 10) - SC2 12.6667 90 228 0.141 1.0000
## (R2 - 10) - SC3 -419.5000 90 228 -4.661 0.0009
## (R2 - 10) - SC4 -154.5000 90 228 -1.717 0.9753
## (R2 - 15) - (R3 - 1) 63.5000 90 228 0.706 1.0000
## (R2 - 15) - (R3 - 10) 55.5000 90 228 0.617 1.0000
## (R2 - 15) - (R3 - 14) 175.7500 90 228 1.953 0.9174
## (R2 - 15) - (R3 - 17) 80.9167 90 228 0.899 1.0000
## (R2 - 15) - (R3 - 19) 233.6667 90 228 2.596 0.5114
## (R2 - 15) - (R3 - 4) 76.2500 90 228 0.847 1.0000
## (R2 - 15) - (R3 - 7) -6.1667 90 228 -0.069 1.0000
## (R2 - 15) - (R3 - 9) 236.8333 90 228 2.631 0.4847
## (R2 - 15) - (R4 - 1) 458.1667 90 228 5.091 0.0001
## (R2 - 15) - (R4 - 14) -10.8333 90 228 -0.120 1.0000
## (R2 - 15) - (R4 - 6) 546.0000 90 228 6.066 <0.0001
## (R2 - 15) - (R4 - 8) 173.5000 90 228 1.928 0.9260
## (R2 - 15) - SC1 228.8333 90 228 2.542 0.5525
## (R2 - 15) - SC2 353.1667 90 228 3.924 0.0163
## (R2 - 15) - SC3 -79.0000 90 228 -0.878 1.0000
## (R2 - 15) - SC4 186.0000 90 228 2.067 0.8700
## (R3 - 1) - (R3 - 10) -8.0000 90 228 -0.089 1.0000
## (R3 - 1) - (R3 - 14) 112.2500 90 228 1.247 0.9995
## (R3 - 1) - (R3 - 17) 17.4167 90 228 0.194 1.0000
## (R3 - 1) - (R3 - 19) 170.1667 90 228 1.891 0.9376
## (R3 - 1) - (R3 - 4) 12.7500 90 228 0.142 1.0000
## (R3 - 1) - (R3 - 7) -69.6667 90 228 -0.774 1.0000
## (R3 - 1) - (R3 - 9) 173.3333 90 228 1.926 0.9266
## (R3 - 1) - (R4 - 1) 394.6667 90 228 4.385 0.0028
## (R3 - 1) - (R4 - 14) -74.3333 90 228 -0.826 1.0000
## (R3 - 1) - (R4 - 6) 482.5000 90 228 5.361 <0.0001
## (R3 - 1) - (R4 - 8) 110.0000 90 228 1.222 0.9996
## (R3 - 1) - SC1 165.3333 90 228 1.837 0.9520
## (R3 - 1) - SC2 289.6667 90 228 3.218 0.1426
## (R3 - 1) - SC3 -142.5000 90 228 -1.583 0.9897
## (R3 - 1) - SC4 122.5000 90 228 1.361 0.9984
## (R3 - 10) - (R3 - 14) 120.2500 90 228 1.336 0.9987
## (R3 - 10) - (R3 - 17) 25.4167 90 228 0.282 1.0000
## (R3 - 10) - (R3 - 19) 178.1667 90 228 1.980 0.9075
## (R3 - 10) - (R3 - 4) 20.7500 90 228 0.231 1.0000
## (R3 - 10) - (R3 - 7) -61.6667 90 228 -0.685 1.0000
## (R3 - 10) - (R3 - 9) 181.3333 90 228 2.015 0.8933
## (R3 - 10) - (R4 - 1) 402.6667 90 228 4.474 0.0020
## (R3 - 10) - (R4 - 14) -66.3333 90 228 -0.737 1.0000
## (R3 - 10) - (R4 - 6) 490.5000 90 228 5.450 <0.0001
## (R3 - 10) - (R4 - 8) 118.0000 90 228 1.311 0.9990
## (R3 - 10) - SC1 173.3333 90 228 1.926 0.9266
## (R3 - 10) - SC2 297.6667 90 228 3.307 0.1127
## (R3 - 10) - SC3 -134.5000 90 228 -1.494 0.9947
## (R3 - 10) - SC4 130.5000 90 228 1.450 0.9963
## (R3 - 14) - (R3 - 17) -94.8333 90 228 -1.054 1.0000
## (R3 - 14) - (R3 - 19) 57.9167 90 228 0.643 1.0000
## (R3 - 14) - (R3 - 4) -99.5000 90 228 -1.106 0.9999
## (R3 - 14) - (R3 - 7) -181.9167 90 228 -2.021 0.8905
## (R3 - 14) - (R3 - 9) 61.0833 90 228 0.679 1.0000
## (R3 - 14) - (R4 - 1) 282.4167 90 228 3.138 0.1747
## (R3 - 14) - (R4 - 14) -186.5833 90 228 -2.073 0.8669
## (R3 - 14) - (R4 - 6) 370.2500 90 228 4.114 0.0082
## (R3 - 14) - (R4 - 8) -2.2500 90 228 -0.025 1.0000
## (R3 - 14) - SC1 53.0833 90 228 0.590 1.0000
## (R3 - 14) - SC2 177.4167 90 228 1.971 0.9106
## (R3 - 14) - SC3 -254.7500 90 228 -2.830 0.3426
## (R3 - 14) - SC4 10.2500 90 228 0.114 1.0000
## (R3 - 17) - (R3 - 19) 152.7500 90 228 1.697 0.9780
## (R3 - 17) - (R3 - 4) -4.6667 90 228 -0.052 1.0000
## (R3 - 17) - (R3 - 7) -87.0833 90 228 -0.968 1.0000
## (R3 - 17) - (R3 - 9) 155.9167 90 228 1.732 0.9729
## (R3 - 17) - (R4 - 1) 377.2500 90 228 4.192 0.0061
## (R3 - 17) - (R4 - 14) -91.7500 90 228 -1.019 1.0000
## (R3 - 17) - (R4 - 6) 465.0833 90 228 5.167 <0.0001
## (R3 - 17) - (R4 - 8) 92.5833 90 228 1.029 1.0000
## (R3 - 17) - SC1 147.9167 90 228 1.643 0.9844
## (R3 - 17) - SC2 272.2500 90 228 3.025 0.2279
## (R3 - 17) - SC3 -159.9167 90 228 -1.777 0.9651
## (R3 - 17) - SC4 105.0833 90 228 1.168 0.9998
## (R3 - 19) - (R3 - 4) -157.4167 90 228 -1.749 0.9701
## (R3 - 19) - (R3 - 7) -239.8333 90 228 -2.665 0.4597
## (R3 - 19) - (R3 - 9) 3.1667 90 228 0.035 1.0000
## (R3 - 19) - (R4 - 1) 224.5000 90 228 2.494 0.5895
## (R3 - 19) - (R4 - 14) -244.5000 90 228 -2.717 0.4216
## (R3 - 19) - (R4 - 6) 312.3333 90 228 3.470 0.0711
## (R3 - 19) - (R4 - 8) -60.1667 90 228 -0.668 1.0000
## (R3 - 19) - SC1 -4.8333 90 228 -0.054 1.0000
## (R3 - 19) - SC2 119.5000 90 228 1.328 0.9988
## (R3 - 19) - SC3 -312.6667 90 228 -3.474 0.0703
## (R3 - 19) - SC4 -47.6667 90 228 -0.530 1.0000
## (R3 - 4) - (R3 - 7) -82.4167 90 228 -0.916 1.0000
## (R3 - 4) - (R3 - 9) 160.5833 90 228 1.784 0.9636
## (R3 - 4) - (R4 - 1) 381.9167 90 228 4.243 0.0050
## (R3 - 4) - (R4 - 14) -87.0833 90 228 -0.968 1.0000
## (R3 - 4) - (R4 - 6) 469.7500 90 228 5.219 <0.0001
## (R3 - 4) - (R4 - 8) 97.2500 90 228 1.081 0.9999
## (R3 - 4) - SC1 152.5833 90 228 1.695 0.9783
## (R3 - 4) - SC2 276.9167 90 228 3.077 0.2023
## (R3 - 4) - SC3 -155.2500 90 228 -1.725 0.9740
## (R3 - 4) - SC4 109.7500 90 228 1.219 0.9996
## (R3 - 7) - (R3 - 9) 243.0000 90 228 2.700 0.4337
## (R3 - 7) - (R4 - 1) 464.3333 90 228 5.159 <0.0001
## (R3 - 7) - (R4 - 14) -4.6667 90 228 -0.052 1.0000
## (R3 - 7) - (R4 - 6) 552.1667 90 228 6.135 <0.0001
## (R3 - 7) - (R4 - 8) 179.6667 90 228 1.996 0.9009
## (R3 - 7) - SC1 235.0000 90 228 2.611 0.5001
## (R3 - 7) - SC2 359.3333 90 228 3.992 0.0127
## (R3 - 7) - SC3 -72.8333 90 228 -0.809 1.0000
## (R3 - 7) - SC4 192.1667 90 228 2.135 0.8349
## (R3 - 9) - (R4 - 1) 221.3333 90 228 2.459 0.6163
## (R3 - 9) - (R4 - 14) -247.6667 90 228 -2.752 0.3964
## (R3 - 9) - (R4 - 6) 309.1667 90 228 3.435 0.0788
## (R3 - 9) - (R4 - 8) -63.3333 90 228 -0.704 1.0000
## (R3 - 9) - SC1 -8.0000 90 228 -0.089 1.0000
## (R3 - 9) - SC2 116.3333 90 228 1.293 0.9992
## (R3 - 9) - SC3 -315.8333 90 228 -3.509 0.0633
## (R3 - 9) - SC4 -50.8333 90 228 -0.565 1.0000
## (R4 - 1) - (R4 - 14) -469.0000 90 228 -5.211 <0.0001
## (R4 - 1) - (R4 - 6) 87.8333 90 228 0.976 1.0000
## (R4 - 1) - (R4 - 8) -284.6667 90 228 -3.163 0.1642
## (R4 - 1) - SC1 -229.3333 90 228 -2.548 0.5483
## (R4 - 1) - SC2 -105.0000 90 228 -1.167 0.9998
## (R4 - 1) - SC3 -537.1667 90 228 -5.968 <0.0001
## (R4 - 1) - SC4 -272.1667 90 228 -3.024 0.2284
## (R4 - 14) - (R4 - 6) 556.8333 90 228 6.187 <0.0001
## (R4 - 14) - (R4 - 8) 184.3333 90 228 2.048 0.8786
## (R4 - 14) - SC1 239.6667 90 228 2.663 0.4611
## (R4 - 14) - SC2 364.0000 90 228 4.044 0.0106
## (R4 - 14) - SC3 -68.1667 90 228 -0.757 1.0000
## (R4 - 14) - SC4 196.8333 90 228 2.187 0.8053
## (R4 - 6) - (R4 - 8) -372.5000 90 228 -4.139 0.0074
## (R4 - 6) - SC1 -317.1667 90 228 -3.524 0.0605
## (R4 - 6) - SC2 -192.8333 90 228 -2.143 0.8309
## (R4 - 6) - SC3 -625.0000 90 228 -6.944 <0.0001
## (R4 - 6) - SC4 -360.0000 90 228 -4.000 0.0124
## (R4 - 8) - SC1 55.3333 90 228 0.615 1.0000
## (R4 - 8) - SC2 179.6667 90 228 1.996 0.9009
## (R4 - 8) - SC3 -252.5000 90 228 -2.805 0.3593
## (R4 - 8) - SC4 12.5000 90 228 0.139 1.0000
## SC1 - SC2 124.3333 90 228 1.381 0.9980
## SC1 - SC3 -307.8333 90 228 -3.420 0.0822
## SC1 - SC4 -42.8333 90 228 -0.476 1.0000
## SC2 - SC3 -432.1667 90 228 -4.802 0.0005
## SC2 - SC4 -167.1667 90 228 -1.857 0.9468
## SC3 - SC4 265.0000 90 228 2.944 0.2720
##
## Environment = E4:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) 465.0000 90 228 5.166 <0.0001
## (R1 - 1) - (R2 - 10) 94.0000 90 228 1.044 1.0000
## (R1 - 1) - (R2 - 15) -219.0000 90 228 -2.433 0.6360
## (R1 - 1) - (R3 - 1) -118.7500 90 228 -1.319 0.9989
## (R1 - 1) - (R3 - 10) 494.5000 90 228 5.494 <0.0001
## (R1 - 1) - (R3 - 14) 289.0000 90 228 3.211 0.1454
## (R1 - 1) - (R3 - 17) 455.0000 90 228 5.055 0.0002
## (R1 - 1) - (R3 - 19) 364.0000 90 228 4.044 0.0106
## (R1 - 1) - (R3 - 4) 140.3333 90 228 1.559 0.9913
## (R1 - 1) - (R3 - 7) 298.0000 90 228 3.311 0.1116
## (R1 - 1) - (R3 - 9) 348.5000 90 228 3.872 0.0195
## (R1 - 1) - (R4 - 1) 10.0000 90 228 0.111 1.0000
## (R1 - 1) - (R4 - 14) 254.1667 90 228 2.824 0.3469
## (R1 - 1) - (R4 - 6) 405.0000 90 228 4.500 0.0018
## (R1 - 1) - (R4 - 8) 188.0000 90 228 2.089 0.8591
## (R1 - 1) - SC1 211.0000 90 228 2.344 0.7014
## (R1 - 1) - SC2 276.0000 90 228 3.067 0.2071
## (R1 - 1) - SC3 162.5000 90 228 1.805 0.9592
## (R1 - 1) - SC4 -157.1667 90 228 -1.746 0.9706
## (R1 - 20) - (R2 - 10) -371.0000 90 228 -4.122 0.0079
## (R1 - 20) - (R2 - 15) -684.0000 90 228 -7.600 <0.0001
## (R1 - 20) - (R3 - 1) -583.7500 90 228 -6.486 <0.0001
## (R1 - 20) - (R3 - 10) 29.5000 90 228 0.328 1.0000
## (R1 - 20) - (R3 - 14) -176.0000 90 228 -1.955 0.9164
## (R1 - 20) - (R3 - 17) -10.0000 90 228 -0.111 1.0000
## (R1 - 20) - (R3 - 19) -101.0000 90 228 -1.122 0.9999
## (R1 - 20) - (R3 - 4) -324.6667 90 228 -3.607 0.0468
## (R1 - 20) - (R3 - 7) -167.0000 90 228 -1.855 0.9473
## (R1 - 20) - (R3 - 9) -116.5000 90 228 -1.294 0.9992
## (R1 - 20) - (R4 - 1) -455.0000 90 228 -5.055 0.0002
## (R1 - 20) - (R4 - 14) -210.8333 90 228 -2.343 0.7027
## (R1 - 20) - (R4 - 6) -60.0000 90 228 -0.667 1.0000
## (R1 - 20) - (R4 - 8) -277.0000 90 228 -3.078 0.2018
## (R1 - 20) - SC1 -254.0000 90 228 -2.822 0.3481
## (R1 - 20) - SC2 -189.0000 90 228 -2.100 0.8535
## (R1 - 20) - SC3 -302.5000 90 228 -3.361 0.0973
## (R1 - 20) - SC4 -622.1667 90 228 -6.913 <0.0001
## (R2 - 10) - (R2 - 15) -313.0000 90 228 -3.478 0.0695
## (R2 - 10) - (R3 - 1) -212.7500 90 228 -2.364 0.6874
## (R2 - 10) - (R3 - 10) 400.5000 90 228 4.450 0.0022
## (R2 - 10) - (R3 - 14) 195.0000 90 228 2.167 0.8172
## (R2 - 10) - (R3 - 17) 361.0000 90 228 4.011 0.0119
## (R2 - 10) - (R3 - 19) 270.0000 90 228 3.000 0.2411
## (R2 - 10) - (R3 - 4) 46.3333 90 228 0.515 1.0000
## (R2 - 10) - (R3 - 7) 204.0000 90 228 2.267 0.7551
## (R2 - 10) - (R3 - 9) 254.5000 90 228 2.828 0.3445
## (R2 - 10) - (R4 - 1) -84.0000 90 228 -0.933 1.0000
## (R2 - 10) - (R4 - 14) 160.1667 90 228 1.780 0.9645
## (R2 - 10) - (R4 - 6) 311.0000 90 228 3.455 0.0742
## (R2 - 10) - (R4 - 8) 94.0000 90 228 1.044 1.0000
## (R2 - 10) - SC1 117.0000 90 228 1.300 0.9991
## (R2 - 10) - SC2 182.0000 90 228 2.022 0.8901
## (R2 - 10) - SC3 68.5000 90 228 0.761 1.0000
## (R2 - 10) - SC4 -251.1667 90 228 -2.791 0.3694
## (R2 - 15) - (R3 - 1) 100.2500 90 228 1.114 0.9999
## (R2 - 15) - (R3 - 10) 713.5000 90 228 7.927 <0.0001
## (R2 - 15) - (R3 - 14) 508.0000 90 228 5.644 <0.0001
## (R2 - 15) - (R3 - 17) 674.0000 90 228 7.489 <0.0001
## (R2 - 15) - (R3 - 19) 583.0000 90 228 6.478 <0.0001
## (R2 - 15) - (R3 - 4) 359.3333 90 228 3.992 0.0127
## (R2 - 15) - (R3 - 7) 517.0000 90 228 5.744 <0.0001
## (R2 - 15) - (R3 - 9) 567.5000 90 228 6.305 <0.0001
## (R2 - 15) - (R4 - 1) 229.0000 90 228 2.544 0.5511
## (R2 - 15) - (R4 - 14) 473.1667 90 228 5.257 <0.0001
## (R2 - 15) - (R4 - 6) 624.0000 90 228 6.933 <0.0001
## (R2 - 15) - (R4 - 8) 407.0000 90 228 4.522 0.0016
## (R2 - 15) - SC1 430.0000 90 228 4.778 0.0005
## (R2 - 15) - SC2 495.0000 90 228 5.500 <0.0001
## (R2 - 15) - SC3 381.5000 90 228 4.239 0.0051
## (R2 - 15) - SC4 61.8333 90 228 0.687 1.0000
## (R3 - 1) - (R3 - 10) 613.2500 90 228 6.814 <0.0001
## (R3 - 1) - (R3 - 14) 407.7500 90 228 4.530 0.0016
## (R3 - 1) - (R3 - 17) 573.7500 90 228 6.375 <0.0001
## (R3 - 1) - (R3 - 19) 482.7500 90 228 5.364 <0.0001
## (R3 - 1) - (R3 - 4) 259.0833 90 228 2.879 0.3117
## (R3 - 1) - (R3 - 7) 416.7500 90 228 4.630 0.0010
## (R3 - 1) - (R3 - 9) 467.2500 90 228 5.191 <0.0001
## (R3 - 1) - (R4 - 1) 128.7500 90 228 1.431 0.9969
## (R3 - 1) - (R4 - 14) 372.9167 90 228 4.143 0.0073
## (R3 - 1) - (R4 - 6) 523.7500 90 228 5.819 <0.0001
## (R3 - 1) - (R4 - 8) 306.7500 90 228 3.408 0.0851
## (R3 - 1) - SC1 329.7500 90 228 3.664 0.0391
## (R3 - 1) - SC2 394.7500 90 228 4.386 0.0028
## (R3 - 1) - SC3 281.2500 90 228 3.125 0.1803
## (R3 - 1) - SC4 -38.4167 90 228 -0.427 1.0000
## (R3 - 10) - (R3 - 14) -205.5000 90 228 -2.283 0.7439
## (R3 - 10) - (R3 - 17) -39.5000 90 228 -0.439 1.0000
## (R3 - 10) - (R3 - 19) -130.5000 90 228 -1.450 0.9963
## (R3 - 10) - (R3 - 4) -354.1667 90 228 -3.935 0.0156
## (R3 - 10) - (R3 - 7) -196.5000 90 228 -2.183 0.8075
## (R3 - 10) - (R3 - 9) -146.0000 90 228 -1.622 0.9864
## (R3 - 10) - (R4 - 1) -484.5000 90 228 -5.383 <0.0001
## (R3 - 10) - (R4 - 14) -240.3333 90 228 -2.670 0.4555
## (R3 - 10) - (R4 - 6) -89.5000 90 228 -0.994 1.0000
## (R3 - 10) - (R4 - 8) -306.5000 90 228 -3.405 0.0858
## (R3 - 10) - SC1 -283.5000 90 228 -3.150 0.1696
## (R3 - 10) - SC2 -218.5000 90 228 -2.428 0.6401
## (R3 - 10) - SC3 -332.0000 90 228 -3.689 0.0361
## (R3 - 10) - SC4 -651.6667 90 228 -7.240 <0.0001
## (R3 - 14) - (R3 - 17) 166.0000 90 228 1.844 0.9502
## (R3 - 14) - (R3 - 19) 75.0000 90 228 0.833 1.0000
## (R3 - 14) - (R3 - 4) -148.6667 90 228 -1.652 0.9835
## (R3 - 14) - (R3 - 7) 9.0000 90 228 0.100 1.0000
## (R3 - 14) - (R3 - 9) 59.5000 90 228 0.661 1.0000
## (R3 - 14) - (R4 - 1) -279.0000 90 228 -3.100 0.1915
## (R3 - 14) - (R4 - 14) -34.8333 90 228 -0.387 1.0000
## (R3 - 14) - (R4 - 6) 116.0000 90 228 1.289 0.9992
## (R3 - 14) - (R4 - 8) -101.0000 90 228 -1.122 0.9999
## (R3 - 14) - SC1 -78.0000 90 228 -0.867 1.0000
## (R3 - 14) - SC2 -13.0000 90 228 -0.144 1.0000
## (R3 - 14) - SC3 -126.5000 90 228 -1.406 0.9975
## (R3 - 14) - SC4 -446.1667 90 228 -4.957 0.0002
## (R3 - 17) - (R3 - 19) -91.0000 90 228 -1.011 1.0000
## (R3 - 17) - (R3 - 4) -314.6667 90 228 -3.496 0.0658
## (R3 - 17) - (R3 - 7) -157.0000 90 228 -1.744 0.9709
## (R3 - 17) - (R3 - 9) -106.5000 90 228 -1.183 0.9998
## (R3 - 17) - (R4 - 1) -445.0000 90 228 -4.944 0.0003
## (R3 - 17) - (R4 - 14) -200.8333 90 228 -2.231 0.7779
## (R3 - 17) - (R4 - 6) -50.0000 90 228 -0.556 1.0000
## (R3 - 17) - (R4 - 8) -267.0000 90 228 -2.967 0.2594
## (R3 - 17) - SC1 -244.0000 90 228 -2.711 0.4256
## (R3 - 17) - SC2 -179.0000 90 228 -1.989 0.9038
## (R3 - 17) - SC3 -292.5000 90 228 -3.250 0.1314
## (R3 - 17) - SC4 -612.1667 90 228 -6.802 <0.0001
## (R3 - 19) - (R3 - 4) -223.6667 90 228 -2.485 0.5966
## (R3 - 19) - (R3 - 7) -66.0000 90 228 -0.733 1.0000
## (R3 - 19) - (R3 - 9) -15.5000 90 228 -0.172 1.0000
## (R3 - 19) - (R4 - 1) -354.0000 90 228 -3.933 0.0158
## (R3 - 19) - (R4 - 14) -109.8333 90 228 -1.220 0.9996
## (R3 - 19) - (R4 - 6) 41.0000 90 228 0.456 1.0000
## (R3 - 19) - (R4 - 8) -176.0000 90 228 -1.955 0.9164
## (R3 - 19) - SC1 -153.0000 90 228 -1.700 0.9776
## (R3 - 19) - SC2 -88.0000 90 228 -0.978 1.0000
## (R3 - 19) - SC3 -201.5000 90 228 -2.239 0.7732
## (R3 - 19) - SC4 -521.1667 90 228 -5.791 <0.0001
## (R3 - 4) - (R3 - 7) 157.6667 90 228 1.752 0.9696
## (R3 - 4) - (R3 - 9) 208.1667 90 228 2.313 0.7236
## (R3 - 4) - (R4 - 1) -130.3333 90 228 -1.448 0.9964
## (R3 - 4) - (R4 - 14) 113.8333 90 228 1.265 0.9994
## (R3 - 4) - (R4 - 6) 264.6667 90 228 2.941 0.2742
## (R3 - 4) - (R4 - 8) 47.6667 90 228 0.530 1.0000
## (R3 - 4) - SC1 70.6667 90 228 0.785 1.0000
## (R3 - 4) - SC2 135.6667 90 228 1.507 0.9942
## (R3 - 4) - SC3 22.1667 90 228 0.246 1.0000
## (R3 - 4) - SC4 -297.5000 90 228 -3.305 0.1133
## (R3 - 7) - (R3 - 9) 50.5000 90 228 0.561 1.0000
## (R3 - 7) - (R4 - 1) -288.0000 90 228 -3.200 0.1496
## (R3 - 7) - (R4 - 14) -43.8333 90 228 -0.487 1.0000
## (R3 - 7) - (R4 - 6) 107.0000 90 228 1.189 0.9997
## (R3 - 7) - (R4 - 8) -110.0000 90 228 -1.222 0.9996
## (R3 - 7) - SC1 -87.0000 90 228 -0.967 1.0000
## (R3 - 7) - SC2 -22.0000 90 228 -0.244 1.0000
## (R3 - 7) - SC3 -135.5000 90 228 -1.505 0.9942
## (R3 - 7) - SC4 -455.1667 90 228 -5.057 0.0002
## (R3 - 9) - (R4 - 1) -338.5000 90 228 -3.761 0.0285
## (R3 - 9) - (R4 - 14) -94.3333 90 228 -1.048 1.0000
## (R3 - 9) - (R4 - 6) 56.5000 90 228 0.628 1.0000
## (R3 - 9) - (R4 - 8) -160.5000 90 228 -1.783 0.9638
## (R3 - 9) - SC1 -137.5000 90 228 -1.528 0.9931
## (R3 - 9) - SC2 -72.5000 90 228 -0.806 1.0000
## (R3 - 9) - SC3 -186.0000 90 228 -2.067 0.8700
## (R3 - 9) - SC4 -505.6667 90 228 -5.618 <0.0001
## (R4 - 1) - (R4 - 14) 244.1667 90 228 2.713 0.4243
## (R4 - 1) - (R4 - 6) 395.0000 90 228 4.389 0.0028
## (R4 - 1) - (R4 - 8) 178.0000 90 228 1.978 0.9082
## (R4 - 1) - SC1 201.0000 90 228 2.233 0.7767
## (R4 - 1) - SC2 266.0000 90 228 2.955 0.2657
## (R4 - 1) - SC3 152.5000 90 228 1.694 0.9784
## (R4 - 1) - SC4 -167.1667 90 228 -1.857 0.9468
## (R4 - 14) - (R4 - 6) 150.8333 90 228 1.676 0.9807
## (R4 - 14) - (R4 - 8) -66.1667 90 228 -0.735 1.0000
## (R4 - 14) - SC1 -43.1667 90 228 -0.480 1.0000
## (R4 - 14) - SC2 21.8333 90 228 0.243 1.0000
## (R4 - 14) - SC3 -91.6667 90 228 -1.018 1.0000
## (R4 - 14) - SC4 -411.3333 90 228 -4.570 0.0013
## (R4 - 6) - (R4 - 8) -217.0000 90 228 -2.411 0.6526
## (R4 - 6) - SC1 -194.0000 90 228 -2.155 0.8236
## (R4 - 6) - SC2 -129.0000 90 228 -1.433 0.9968
## (R4 - 6) - SC3 -242.5000 90 228 -2.694 0.4378
## (R4 - 6) - SC4 -562.1667 90 228 -6.246 <0.0001
## (R4 - 8) - SC1 23.0000 90 228 0.256 1.0000
## (R4 - 8) - SC2 88.0000 90 228 0.978 1.0000
## (R4 - 8) - SC3 -25.5000 90 228 -0.283 1.0000
## (R4 - 8) - SC4 -345.1667 90 228 -3.835 0.0222
## SC1 - SC2 65.0000 90 228 0.722 1.0000
## SC1 - SC3 -48.5000 90 228 -0.539 1.0000
## SC1 - SC4 -368.1667 90 228 -4.091 0.0089
## SC2 - SC3 -113.5000 90 228 -1.261 0.9994
## SC2 - SC4 -433.1667 90 228 -4.813 0.0005
## SC3 - SC4 -319.6667 90 228 -3.552 0.0556
##
## Environment = E5:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) -166.5000 90 228 -1.850 0.9487
## (R1 - 1) - (R2 - 10) 22.0000 90 228 0.244 1.0000
## (R1 - 1) - (R2 - 15) -265.0000 90 228 -2.944 0.2720
## (R1 - 1) - (R3 - 1) -88.1667 90 228 -0.980 1.0000
## (R1 - 1) - (R3 - 10) 56.0000 90 228 0.622 1.0000
## (R1 - 1) - (R3 - 14) -79.5000 90 228 -0.883 1.0000
## (R1 - 1) - (R3 - 17) -164.5000 90 228 -1.828 0.9542
## (R1 - 1) - (R3 - 19) 134.5000 90 228 1.494 0.9947
## (R1 - 1) - (R3 - 4) -191.2500 90 228 -2.125 0.8404
## (R1 - 1) - (R3 - 7) -293.5000 90 228 -3.261 0.1276
## (R1 - 1) - (R3 - 9) -163.0000 90 228 -1.811 0.9580
## (R1 - 1) - (R4 - 1) -316.5000 90 228 -3.517 0.0619
## (R1 - 1) - (R4 - 14) 40.5000 90 228 0.450 1.0000
## (R1 - 1) - (R4 - 6) -160.0000 90 228 -1.778 0.9649
## (R1 - 1) - (R4 - 8) 123.8333 90 228 1.376 0.9981
## (R1 - 1) - SC1 -157.0000 90 228 -1.744 0.9709
## (R1 - 1) - SC2 4.0000 90 228 0.044 1.0000
## (R1 - 1) - SC3 -29.0000 90 228 -0.322 1.0000
## (R1 - 1) - SC4 -191.1667 90 228 -2.124 0.8409
## (R1 - 20) - (R2 - 10) 188.5000 90 228 2.094 0.8564
## (R1 - 20) - (R2 - 15) -98.5000 90 228 -1.094 0.9999
## (R1 - 20) - (R3 - 1) 78.3333 90 228 0.870 1.0000
## (R1 - 20) - (R3 - 10) 222.5000 90 228 2.472 0.6065
## (R1 - 20) - (R3 - 14) 87.0000 90 228 0.967 1.0000
## (R1 - 20) - (R3 - 17) 2.0000 90 228 0.022 1.0000
## (R1 - 20) - (R3 - 19) 301.0000 90 228 3.344 0.1019
## (R1 - 20) - (R3 - 4) -24.7500 90 228 -0.275 1.0000
## (R1 - 20) - (R3 - 7) -127.0000 90 228 -1.411 0.9974
## (R1 - 20) - (R3 - 9) 3.5000 90 228 0.039 1.0000
## (R1 - 20) - (R4 - 1) -150.0000 90 228 -1.667 0.9818
## (R1 - 20) - (R4 - 14) 207.0000 90 228 2.300 0.7325
## (R1 - 20) - (R4 - 6) 6.5000 90 228 0.072 1.0000
## (R1 - 20) - (R4 - 8) 290.3333 90 228 3.226 0.1399
## (R1 - 20) - SC1 9.5000 90 228 0.106 1.0000
## (R1 - 20) - SC2 170.5000 90 228 1.894 0.9365
## (R1 - 20) - SC3 137.5000 90 228 1.528 0.9931
## (R1 - 20) - SC4 -24.6667 90 228 -0.274 1.0000
## (R2 - 10) - (R2 - 15) -287.0000 90 228 -3.189 0.1539
## (R2 - 10) - (R3 - 1) -110.1667 90 228 -1.224 0.9996
## (R2 - 10) - (R3 - 10) 34.0000 90 228 0.378 1.0000
## (R2 - 10) - (R3 - 14) -101.5000 90 228 -1.128 0.9999
## (R2 - 10) - (R3 - 17) -186.5000 90 228 -2.072 0.8673
## (R2 - 10) - (R3 - 19) 112.5000 90 228 1.250 0.9995
## (R2 - 10) - (R3 - 4) -213.2500 90 228 -2.369 0.6833
## (R2 - 10) - (R3 - 7) -315.5000 90 228 -3.505 0.0640
## (R2 - 10) - (R3 - 9) -185.0000 90 228 -2.055 0.8752
## (R2 - 10) - (R4 - 1) -338.5000 90 228 -3.761 0.0285
## (R2 - 10) - (R4 - 14) 18.5000 90 228 0.206 1.0000
## (R2 - 10) - (R4 - 6) -182.0000 90 228 -2.022 0.8901
## (R2 - 10) - (R4 - 8) 101.8333 90 228 1.131 0.9999
## (R2 - 10) - SC1 -179.0000 90 228 -1.989 0.9038
## (R2 - 10) - SC2 -18.0000 90 228 -0.200 1.0000
## (R2 - 10) - SC3 -51.0000 90 228 -0.567 1.0000
## (R2 - 10) - SC4 -213.1667 90 228 -2.368 0.6840
## (R2 - 15) - (R3 - 1) 176.8333 90 228 1.965 0.9130
## (R2 - 15) - (R3 - 10) 321.0000 90 228 3.567 0.0531
## (R2 - 15) - (R3 - 14) 185.5000 90 228 2.061 0.8726
## (R2 - 15) - (R3 - 17) 100.5000 90 228 1.117 0.9999
## (R2 - 15) - (R3 - 19) 399.5000 90 228 4.439 0.0023
## (R2 - 15) - (R3 - 4) 73.7500 90 228 0.819 1.0000
## (R2 - 15) - (R3 - 7) -28.5000 90 228 -0.317 1.0000
## (R2 - 15) - (R3 - 9) 102.0000 90 228 1.133 0.9999
## (R2 - 15) - (R4 - 1) -51.5000 90 228 -0.572 1.0000
## (R2 - 15) - (R4 - 14) 305.5000 90 228 3.394 0.0885
## (R2 - 15) - (R4 - 6) 105.0000 90 228 1.167 0.9998
## (R2 - 15) - (R4 - 8) 388.8333 90 228 4.320 0.0037
## (R2 - 15) - SC1 108.0000 90 228 1.200 0.9997
## (R2 - 15) - SC2 269.0000 90 228 2.989 0.2471
## (R2 - 15) - SC3 236.0000 90 228 2.622 0.4917
## (R2 - 15) - SC4 73.8333 90 228 0.820 1.0000
## (R3 - 1) - (R3 - 10) 144.1667 90 228 1.602 0.9882
## (R3 - 1) - (R3 - 14) 8.6667 90 228 0.096 1.0000
## (R3 - 1) - (R3 - 17) -76.3333 90 228 -0.848 1.0000
## (R3 - 1) - (R3 - 19) 222.6667 90 228 2.474 0.6051
## (R3 - 1) - (R3 - 4) -103.0833 90 228 -1.145 0.9998
## (R3 - 1) - (R3 - 7) -205.3333 90 228 -2.281 0.7451
## (R3 - 1) - (R3 - 9) -74.8333 90 228 -0.831 1.0000
## (R3 - 1) - (R4 - 1) -228.3333 90 228 -2.537 0.5568
## (R3 - 1) - (R4 - 14) 128.6667 90 228 1.430 0.9969
## (R3 - 1) - (R4 - 6) -71.8333 90 228 -0.798 1.0000
## (R3 - 1) - (R4 - 8) 212.0000 90 228 2.355 0.6934
## (R3 - 1) - SC1 -68.8333 90 228 -0.765 1.0000
## (R3 - 1) - SC2 92.1667 90 228 1.024 1.0000
## (R3 - 1) - SC3 59.1667 90 228 0.657 1.0000
## (R3 - 1) - SC4 -103.0000 90 228 -1.144 0.9999
## (R3 - 10) - (R3 - 14) -135.5000 90 228 -1.505 0.9942
## (R3 - 10) - (R3 - 17) -220.5000 90 228 -2.450 0.6234
## (R3 - 10) - (R3 - 19) 78.5000 90 228 0.872 1.0000
## (R3 - 10) - (R3 - 4) -247.2500 90 228 -2.747 0.3997
## (R3 - 10) - (R3 - 7) -349.5000 90 228 -3.883 0.0188
## (R3 - 10) - (R3 - 9) -219.0000 90 228 -2.433 0.6360
## (R3 - 10) - (R4 - 1) -372.5000 90 228 -4.139 0.0074
## (R3 - 10) - (R4 - 14) -15.5000 90 228 -0.172 1.0000
## (R3 - 10) - (R4 - 6) -216.0000 90 228 -2.400 0.6609
## (R3 - 10) - (R4 - 8) 67.8333 90 228 0.754 1.0000
## (R3 - 10) - SC1 -213.0000 90 228 -2.367 0.6853
## (R3 - 10) - SC2 -52.0000 90 228 -0.578 1.0000
## (R3 - 10) - SC3 -85.0000 90 228 -0.944 1.0000
## (R3 - 10) - SC4 -247.1667 90 228 -2.746 0.4004
## (R3 - 14) - (R3 - 17) -85.0000 90 228 -0.944 1.0000
## (R3 - 14) - (R3 - 19) 214.0000 90 228 2.378 0.6772
## (R3 - 14) - (R3 - 4) -111.7500 90 228 -1.242 0.9995
## (R3 - 14) - (R3 - 7) -214.0000 90 228 -2.378 0.6772
## (R3 - 14) - (R3 - 9) -83.5000 90 228 -0.928 1.0000
## (R3 - 14) - (R4 - 1) -237.0000 90 228 -2.633 0.4833
## (R3 - 14) - (R4 - 14) 120.0000 90 228 1.333 0.9987
## (R3 - 14) - (R4 - 6) -80.5000 90 228 -0.894 1.0000
## (R3 - 14) - (R4 - 8) 203.3333 90 228 2.259 0.7599
## (R3 - 14) - SC1 -77.5000 90 228 -0.861 1.0000
## (R3 - 14) - SC2 83.5000 90 228 0.928 1.0000
## (R3 - 14) - SC3 50.5000 90 228 0.561 1.0000
## (R3 - 14) - SC4 -111.6667 90 228 -1.241 0.9995
## (R3 - 17) - (R3 - 19) 299.0000 90 228 3.322 0.1083
## (R3 - 17) - (R3 - 4) -26.7500 90 228 -0.297 1.0000
## (R3 - 17) - (R3 - 7) -129.0000 90 228 -1.433 0.9968
## (R3 - 17) - (R3 - 9) 1.5000 90 228 0.017 1.0000
## (R3 - 17) - (R4 - 1) -152.0000 90 228 -1.689 0.9791
## (R3 - 17) - (R4 - 14) 205.0000 90 228 2.278 0.7476
## (R3 - 17) - (R4 - 6) 4.5000 90 228 0.050 1.0000
## (R3 - 17) - (R4 - 8) 288.3333 90 228 3.204 0.1482
## (R3 - 17) - SC1 7.5000 90 228 0.083 1.0000
## (R3 - 17) - SC2 168.5000 90 228 1.872 0.9428
## (R3 - 17) - SC3 135.5000 90 228 1.505 0.9942
## (R3 - 17) - SC4 -26.6667 90 228 -0.296 1.0000
## (R3 - 19) - (R3 - 4) -325.7500 90 228 -3.619 0.0451
## (R3 - 19) - (R3 - 7) -428.0000 90 228 -4.755 0.0006
## (R3 - 19) - (R3 - 9) -297.5000 90 228 -3.305 0.1133
## (R3 - 19) - (R4 - 1) -451.0000 90 228 -5.011 0.0002
## (R3 - 19) - (R4 - 14) -94.0000 90 228 -1.044 1.0000
## (R3 - 19) - (R4 - 6) -294.5000 90 228 -3.272 0.1239
## (R3 - 19) - (R4 - 8) -10.6667 90 228 -0.119 1.0000
## (R3 - 19) - SC1 -291.5000 90 228 -3.239 0.1353
## (R3 - 19) - SC2 -130.5000 90 228 -1.450 0.9963
## (R3 - 19) - SC3 -163.5000 90 228 -1.817 0.9568
## (R3 - 19) - SC4 -325.6667 90 228 -3.618 0.0452
## (R3 - 4) - (R3 - 7) -102.2500 90 228 -1.136 0.9999
## (R3 - 4) - (R3 - 9) 28.2500 90 228 0.314 1.0000
## (R3 - 4) - (R4 - 1) -125.2500 90 228 -1.392 0.9978
## (R3 - 4) - (R4 - 14) 231.7500 90 228 2.575 0.5277
## (R3 - 4) - (R4 - 6) 31.2500 90 228 0.347 1.0000
## (R3 - 4) - (R4 - 8) 315.0833 90 228 3.501 0.0649
## (R3 - 4) - SC1 34.2500 90 228 0.381 1.0000
## (R3 - 4) - SC2 195.2500 90 228 2.169 0.8156
## (R3 - 4) - SC3 162.2500 90 228 1.803 0.9598
## (R3 - 4) - SC4 0.0833 90 228 0.001 1.0000
## (R3 - 7) - (R3 - 9) 130.5000 90 228 1.450 0.9963
## (R3 - 7) - (R4 - 1) -23.0000 90 228 -0.256 1.0000
## (R3 - 7) - (R4 - 14) 334.0000 90 228 3.711 0.0336
## (R3 - 7) - (R4 - 6) 133.5000 90 228 1.483 0.9952
## (R3 - 7) - (R4 - 8) 417.3333 90 228 4.637 0.0010
## (R3 - 7) - SC1 136.5000 90 228 1.517 0.9937
## (R3 - 7) - SC2 297.5000 90 228 3.305 0.1133
## (R3 - 7) - SC3 264.5000 90 228 2.939 0.2753
## (R3 - 7) - SC4 102.3333 90 228 1.137 0.9999
## (R3 - 9) - (R4 - 1) -153.5000 90 228 -1.705 0.9769
## (R3 - 9) - (R4 - 14) 203.5000 90 228 2.261 0.7587
## (R3 - 9) - (R4 - 6) 3.0000 90 228 0.033 1.0000
## (R3 - 9) - (R4 - 8) 286.8333 90 228 3.187 0.1546
## (R3 - 9) - SC1 6.0000 90 228 0.067 1.0000
## (R3 - 9) - SC2 167.0000 90 228 1.855 0.9473
## (R3 - 9) - SC3 134.0000 90 228 1.489 0.9950
## (R3 - 9) - SC4 -28.1667 90 228 -0.313 1.0000
## (R4 - 1) - (R4 - 14) 357.0000 90 228 3.967 0.0140
## (R4 - 1) - (R4 - 6) 156.5000 90 228 1.739 0.9718
## (R4 - 1) - (R4 - 8) 440.3333 90 228 4.892 0.0003
## (R4 - 1) - SC1 159.5000 90 228 1.772 0.9660
## (R4 - 1) - SC2 320.5000 90 228 3.561 0.0541
## (R4 - 1) - SC3 287.5000 90 228 3.194 0.1517
## (R4 - 1) - SC4 125.3333 90 228 1.393 0.9978
## (R4 - 14) - (R4 - 6) -200.5000 90 228 -2.228 0.7803
## (R4 - 14) - (R4 - 8) 83.3333 90 228 0.926 1.0000
## (R4 - 14) - SC1 -197.5000 90 228 -2.194 0.8008
## (R4 - 14) - SC2 -36.5000 90 228 -0.406 1.0000
## (R4 - 14) - SC3 -69.5000 90 228 -0.772 1.0000
## (R4 - 14) - SC4 -231.6667 90 228 -2.574 0.5284
## (R4 - 6) - (R4 - 8) 283.8333 90 228 3.154 0.1680
## (R4 - 6) - SC1 3.0000 90 228 0.033 1.0000
## (R4 - 6) - SC2 164.0000 90 228 1.822 0.9555
## (R4 - 6) - SC3 131.0000 90 228 1.456 0.9962
## (R4 - 6) - SC4 -31.1667 90 228 -0.346 1.0000
## (R4 - 8) - SC1 -280.8333 90 228 -3.120 0.1823
## (R4 - 8) - SC2 -119.8333 90 228 -1.331 0.9988
## (R4 - 8) - SC3 -152.8333 90 228 -1.698 0.9779
## (R4 - 8) - SC4 -315.0000 90 228 -3.500 0.0651
## SC1 - SC2 161.0000 90 228 1.789 0.9627
## SC1 - SC3 128.0000 90 228 1.422 0.9971
## SC1 - SC4 -34.1667 90 228 -0.380 1.0000
## SC2 - SC3 -33.0000 90 228 -0.367 1.0000
## SC2 - SC4 -195.1667 90 228 -2.168 0.8162
## SC3 - SC4 -162.1667 90 228 -1.802 0.9600
##
## Environment = E6:
## contrast estimate SE df t.ratio p.value
## (R1 - 1) - (R1 - 20) -315.7500 90 228 -3.508 0.0635
## (R1 - 1) - (R2 - 10) -533.0000 90 228 -5.922 <0.0001
## (R1 - 1) - (R2 - 15) -66.5000 90 228 -0.739 1.0000
## (R1 - 1) - (R3 - 1) -184.5000 90 228 -2.050 0.8778
## (R1 - 1) - (R3 - 10) -426.8333 90 228 -4.742 0.0006
## (R1 - 1) - (R3 - 14) -98.8333 90 228 -1.098 0.9999
## (R1 - 1) - (R3 - 17) -166.8333 90 228 -1.854 0.9478
## (R1 - 1) - (R3 - 19) -685.5000 90 228 -7.616 <0.0001
## (R1 - 1) - (R3 - 4) -539.0000 90 228 -5.989 <0.0001
## (R1 - 1) - (R3 - 7) 26.0000 90 228 0.289 1.0000
## (R1 - 1) - (R3 - 9) -109.0000 90 228 -1.211 0.9997
## (R1 - 1) - (R4 - 1) -146.0000 90 228 -1.622 0.9864
## (R1 - 1) - (R4 - 14) -50.5000 90 228 -0.561 1.0000
## (R1 - 1) - (R4 - 6) -380.5000 90 228 -4.228 0.0053
## (R1 - 1) - (R4 - 8) -220.7500 90 228 -2.453 0.6213
## (R1 - 1) - SC1 -41.0000 90 228 -0.456 1.0000
## (R1 - 1) - SC2 36.0000 90 228 0.400 1.0000
## (R1 - 1) - SC3 2.0000 90 228 0.022 1.0000
## (R1 - 1) - SC4 -5.0000 90 228 -0.056 1.0000
## (R1 - 20) - (R2 - 10) -217.2500 90 228 -2.414 0.6505
## (R1 - 20) - (R2 - 15) 249.2500 90 228 2.769 0.3841
## (R1 - 20) - (R3 - 1) 131.2500 90 228 1.458 0.9961
## (R1 - 20) - (R3 - 10) -111.0833 90 228 -1.234 0.9996
## (R1 - 20) - (R3 - 14) 216.9167 90 228 2.410 0.6533
## (R1 - 20) - (R3 - 17) 148.9167 90 228 1.655 0.9832
## (R1 - 20) - (R3 - 19) -369.7500 90 228 -4.108 0.0083
## (R1 - 20) - (R3 - 4) -223.2500 90 228 -2.480 0.6001
## (R1 - 20) - (R3 - 7) 341.7500 90 228 3.797 0.0252
## (R1 - 20) - (R3 - 9) 206.7500 90 228 2.297 0.7344
## (R1 - 20) - (R4 - 1) 169.7500 90 228 1.886 0.9389
## (R1 - 20) - (R4 - 14) 265.2500 90 228 2.947 0.2704
## (R1 - 20) - (R4 - 6) -64.7500 90 228 -0.719 1.0000
## (R1 - 20) - (R4 - 8) 95.0000 90 228 1.056 1.0000
## (R1 - 20) - SC1 274.7500 90 228 3.053 0.2139
## (R1 - 20) - SC2 351.7500 90 228 3.908 0.0172
## (R1 - 20) - SC3 317.7500 90 228 3.530 0.0593
## (R1 - 20) - SC4 310.7500 90 228 3.453 0.0748
## (R2 - 10) - (R2 - 15) 466.5000 90 228 5.183 <0.0001
## (R2 - 10) - (R3 - 1) 348.5000 90 228 3.872 0.0195
## (R2 - 10) - (R3 - 10) 106.1667 90 228 1.180 0.9998
## (R2 - 10) - (R3 - 14) 434.1667 90 228 4.824 0.0004
## (R2 - 10) - (R3 - 17) 366.1667 90 228 4.068 0.0097
## (R2 - 10) - (R3 - 19) -152.5000 90 228 -1.694 0.9784
## (R2 - 10) - (R3 - 4) -6.0000 90 228 -0.067 1.0000
## (R2 - 10) - (R3 - 7) 559.0000 90 228 6.211 <0.0001
## (R2 - 10) - (R3 - 9) 424.0000 90 228 4.711 0.0007
## (R2 - 10) - (R4 - 1) 387.0000 90 228 4.300 0.0040
## (R2 - 10) - (R4 - 14) 482.5000 90 228 5.361 <0.0001
## (R2 - 10) - (R4 - 6) 152.5000 90 228 1.694 0.9784
## (R2 - 10) - (R4 - 8) 312.2500 90 228 3.469 0.0713
## (R2 - 10) - SC1 492.0000 90 228 5.466 <0.0001
## (R2 - 10) - SC2 569.0000 90 228 6.322 <0.0001
## (R2 - 10) - SC3 535.0000 90 228 5.944 <0.0001
## (R2 - 10) - SC4 528.0000 90 228 5.866 <0.0001
## (R2 - 15) - (R3 - 1) -118.0000 90 228 -1.311 0.9990
## (R2 - 15) - (R3 - 10) -360.3333 90 228 -4.004 0.0122
## (R2 - 15) - (R3 - 14) -32.3333 90 228 -0.359 1.0000
## (R2 - 15) - (R3 - 17) -100.3333 90 228 -1.115 0.9999
## (R2 - 15) - (R3 - 19) -619.0000 90 228 -6.878 <0.0001
## (R2 - 15) - (R3 - 4) -472.5000 90 228 -5.250 <0.0001
## (R2 - 15) - (R3 - 7) 92.5000 90 228 1.028 1.0000
## (R2 - 15) - (R3 - 9) -42.5000 90 228 -0.472 1.0000
## (R2 - 15) - (R4 - 1) -79.5000 90 228 -0.883 1.0000
## (R2 - 15) - (R4 - 14) 16.0000 90 228 0.178 1.0000
## (R2 - 15) - (R4 - 6) -314.0000 90 228 -3.489 0.0673
## (R2 - 15) - (R4 - 8) -154.2500 90 228 -1.714 0.9757
## (R2 - 15) - SC1 25.5000 90 228 0.283 1.0000
## (R2 - 15) - SC2 102.5000 90 228 1.139 0.9999
## (R2 - 15) - SC3 68.5000 90 228 0.761 1.0000
## (R2 - 15) - SC4 61.5000 90 228 0.683 1.0000
## (R3 - 1) - (R3 - 10) -242.3333 90 228 -2.692 0.4391
## (R3 - 1) - (R3 - 14) 85.6667 90 228 0.952 1.0000
## (R3 - 1) - (R3 - 17) 17.6667 90 228 0.196 1.0000
## (R3 - 1) - (R3 - 19) -501.0000 90 228 -5.566 <0.0001
## (R3 - 1) - (R3 - 4) -354.5000 90 228 -3.939 0.0154
## (R3 - 1) - (R3 - 7) 210.5000 90 228 2.339 0.7053
## (R3 - 1) - (R3 - 9) 75.5000 90 228 0.839 1.0000
## (R3 - 1) - (R4 - 1) 38.5000 90 228 0.428 1.0000
## (R3 - 1) - (R4 - 14) 134.0000 90 228 1.489 0.9950
## (R3 - 1) - (R4 - 6) -196.0000 90 228 -2.178 0.8108
## (R3 - 1) - (R4 - 8) -36.2500 90 228 -0.403 1.0000
## (R3 - 1) - SC1 143.5000 90 228 1.594 0.9888
## (R3 - 1) - SC2 220.5000 90 228 2.450 0.6234
## (R3 - 1) - SC3 186.5000 90 228 2.072 0.8673
## (R3 - 1) - SC4 179.5000 90 228 1.994 0.9016
## (R3 - 10) - (R3 - 14) 328.0000 90 228 3.644 0.0416
## (R3 - 10) - (R3 - 17) 260.0000 90 228 2.889 0.3053
## (R3 - 10) - (R3 - 19) -258.6667 90 228 -2.874 0.3146
## (R3 - 10) - (R3 - 4) -112.1667 90 228 -1.246 0.9995
## (R3 - 10) - (R3 - 7) 452.8333 90 228 5.031 0.0002
## (R3 - 10) - (R3 - 9) 317.8333 90 228 3.531 0.0592
## (R3 - 10) - (R4 - 1) 280.8333 90 228 3.120 0.1823
## (R3 - 10) - (R4 - 14) 376.3333 90 228 4.181 0.0063
## (R3 - 10) - (R4 - 6) 46.3333 90 228 0.515 1.0000
## (R3 - 10) - (R4 - 8) 206.0833 90 228 2.290 0.7395
## (R3 - 10) - SC1 385.8333 90 228 4.287 0.0042
## (R3 - 10) - SC2 462.8333 90 228 5.142 0.0001
## (R3 - 10) - SC3 428.8333 90 228 4.765 0.0006
## (R3 - 10) - SC4 421.8333 90 228 4.687 0.0008
## (R3 - 14) - (R3 - 17) -68.0000 90 228 -0.756 1.0000
## (R3 - 14) - (R3 - 19) -586.6667 90 228 -6.518 <0.0001
## (R3 - 14) - (R3 - 4) -440.1667 90 228 -4.891 0.0003
## (R3 - 14) - (R3 - 7) 124.8333 90 228 1.387 0.9979
## (R3 - 14) - (R3 - 9) -10.1667 90 228 -0.113 1.0000
## (R3 - 14) - (R4 - 1) -47.1667 90 228 -0.524 1.0000
## (R3 - 14) - (R4 - 14) 48.3333 90 228 0.537 1.0000
## (R3 - 14) - (R4 - 6) -281.6667 90 228 -3.130 0.1783
## (R3 - 14) - (R4 - 8) -121.9167 90 228 -1.355 0.9985
## (R3 - 14) - SC1 57.8333 90 228 0.643 1.0000
## (R3 - 14) - SC2 134.8333 90 228 1.498 0.9946
## (R3 - 14) - SC3 100.8333 90 228 1.120 0.9999
## (R3 - 14) - SC4 93.8333 90 228 1.043 1.0000
## (R3 - 17) - (R3 - 19) -518.6667 90 228 -5.763 <0.0001
## (R3 - 17) - (R3 - 4) -372.1667 90 228 -4.135 0.0075
## (R3 - 17) - (R3 - 7) 192.8333 90 228 2.143 0.8309
## (R3 - 17) - (R3 - 9) 57.8333 90 228 0.643 1.0000
## (R3 - 17) - (R4 - 1) 20.8333 90 228 0.231 1.0000
## (R3 - 17) - (R4 - 14) 116.3333 90 228 1.293 0.9992
## (R3 - 17) - (R4 - 6) -213.6667 90 228 -2.374 0.6799
## (R3 - 17) - (R4 - 8) -53.9167 90 228 -0.599 1.0000
## (R3 - 17) - SC1 125.8333 90 228 1.398 0.9977
## (R3 - 17) - SC2 202.8333 90 228 2.254 0.7636
## (R3 - 17) - SC3 168.8333 90 228 1.876 0.9418
## (R3 - 17) - SC4 161.8333 90 228 1.798 0.9608
## (R3 - 19) - (R3 - 4) 146.5000 90 228 1.628 0.9859
## (R3 - 19) - (R3 - 7) 711.5000 90 228 7.905 <0.0001
## (R3 - 19) - (R3 - 9) 576.5000 90 228 6.405 <0.0001
## (R3 - 19) - (R4 - 1) 539.5000 90 228 5.994 <0.0001
## (R3 - 19) - (R4 - 14) 635.0000 90 228 7.055 <0.0001
## (R3 - 19) - (R4 - 6) 305.0000 90 228 3.389 0.0899
## (R3 - 19) - (R4 - 8) 464.7500 90 228 5.164 <0.0001
## (R3 - 19) - SC1 644.5000 90 228 7.161 <0.0001
## (R3 - 19) - SC2 721.5000 90 228 8.016 <0.0001
## (R3 - 19) - SC3 687.5000 90 228 7.639 <0.0001
## (R3 - 19) - SC4 680.5000 90 228 7.561 <0.0001
## (R3 - 4) - (R3 - 7) 565.0000 90 228 6.278 <0.0001
## (R3 - 4) - (R3 - 9) 430.0000 90 228 4.778 0.0005
## (R3 - 4) - (R4 - 1) 393.0000 90 228 4.367 0.0031
## (R3 - 4) - (R4 - 14) 488.5000 90 228 5.428 <0.0001
## (R3 - 4) - (R4 - 6) 158.5000 90 228 1.761 0.9680
## (R3 - 4) - (R4 - 8) 318.2500 90 228 3.536 0.0584
## (R3 - 4) - SC1 498.0000 90 228 5.533 <0.0001
## (R3 - 4) - SC2 575.0000 90 228 6.389 <0.0001
## (R3 - 4) - SC3 541.0000 90 228 6.011 <0.0001
## (R3 - 4) - SC4 534.0000 90 228 5.933 <0.0001
## (R3 - 7) - (R3 - 9) -135.0000 90 228 -1.500 0.9945
## (R3 - 7) - (R4 - 1) -172.0000 90 228 -1.911 0.9314
## (R3 - 7) - (R4 - 14) -76.5000 90 228 -0.850 1.0000
## (R3 - 7) - (R4 - 6) -406.5000 90 228 -4.516 0.0017
## (R3 - 7) - (R4 - 8) -246.7500 90 228 -2.742 0.4036
## (R3 - 7) - SC1 -67.0000 90 228 -0.744 1.0000
## (R3 - 7) - SC2 10.0000 90 228 0.111 1.0000
## (R3 - 7) - SC3 -24.0000 90 228 -0.267 1.0000
## (R3 - 7) - SC4 -31.0000 90 228 -0.344 1.0000
## (R3 - 9) - (R4 - 1) -37.0000 90 228 -0.411 1.0000
## (R3 - 9) - (R4 - 14) 58.5000 90 228 0.650 1.0000
## (R3 - 9) - (R4 - 6) -271.5000 90 228 -3.017 0.2323
## (R3 - 9) - (R4 - 8) -111.7500 90 228 -1.242 0.9995
## (R3 - 9) - SC1 68.0000 90 228 0.756 1.0000
## (R3 - 9) - SC2 145.0000 90 228 1.611 0.9874
## (R3 - 9) - SC3 111.0000 90 228 1.233 0.9996
## (R3 - 9) - SC4 104.0000 90 228 1.156 0.9998
## (R4 - 1) - (R4 - 14) 95.5000 90 228 1.061 1.0000
## (R4 - 1) - (R4 - 6) -234.5000 90 228 -2.605 0.5043
## (R4 - 1) - (R4 - 8) -74.7500 90 228 -0.831 1.0000
## (R4 - 1) - SC1 105.0000 90 228 1.167 0.9998
## (R4 - 1) - SC2 182.0000 90 228 2.022 0.8901
## (R4 - 1) - SC3 148.0000 90 228 1.644 0.9843
## (R4 - 1) - SC4 141.0000 90 228 1.567 0.9908
## (R4 - 14) - (R4 - 6) -330.0000 90 228 -3.667 0.0388
## (R4 - 14) - (R4 - 8) -170.2500 90 228 -1.892 0.9373
## (R4 - 14) - SC1 9.5000 90 228 0.106 1.0000
## (R4 - 14) - SC2 86.5000 90 228 0.961 1.0000
## (R4 - 14) - SC3 52.5000 90 228 0.583 1.0000
## (R4 - 14) - SC4 45.5000 90 228 0.506 1.0000
## (R4 - 6) - (R4 - 8) 159.7500 90 228 1.775 0.9654
## (R4 - 6) - SC1 339.5000 90 228 3.772 0.0274
## (R4 - 6) - SC2 416.5000 90 228 4.628 0.0010
## (R4 - 6) - SC3 382.5000 90 228 4.250 0.0049
## (R4 - 6) - SC4 375.5000 90 228 4.172 0.0065
## (R4 - 8) - SC1 179.7500 90 228 1.997 0.9005
## (R4 - 8) - SC2 256.7500 90 228 2.853 0.3281
## (R4 - 8) - SC3 222.7500 90 228 2.475 0.6043
## (R4 - 8) - SC4 215.7500 90 228 2.397 0.6629
## SC1 - SC2 77.0000 90 228 0.856 1.0000
## SC1 - SC3 43.0000 90 228 0.478 1.0000
## SC1 - SC4 36.0000 90 228 0.400 1.0000
## SC2 - SC3 -34.0000 90 228 -0.378 1.0000
## SC2 - SC4 -41.0000 90 228 -0.456 1.0000
## SC3 - SC4 -7.0000 90 228 -0.078 1.0000
##
## Degrees-of-freedom method: kenward-roger
## P value adjustment: tukey method for comparing a family of 20 estimates================================================================
27. GRAFIK INTERAKSI BIOMASS
================================================================
emmip(
model_biomass,
Environment ~ Genotype,
CIs = TRUE
)
# ================================================================ # 28.
MEMBANDINGKAN MODEL YIELD DAN BIOMASS #
================================================================
summary(model_yield)## Linear mixed model fit by REML. t-tests use Satterthwaite's method [
## lmerModLmerTest]
## Formula: Yield ~ Genotype * Environment + (1 | Environment:Replications)
## Data: data
##
## REML criterion at convergence: 770.3
##
## Scaled residuals:
## Min 1Q Median 3Q Max
## -4.4372 -0.1681 -0.0115 0.2045 4.5136
##
## Random effects:
## Groups Name Variance Std.Dev.
## Environment:Replications (Intercept) 0.02313 0.1521
## Residual 0.81877 0.9049
## Number of obs: 360, groups: Environment:Replications, 18
##
## Fixed effects:
## Estimate Std. Error df t value Pr(>|t|)
## (Intercept) 4.233e+00 5.297e-01 2.366e+02 7.991 5.86e-14
## GenotypeR1 - 20 4.811e-14 7.388e-01 2.280e+02 0.000 1.000000
## GenotypeR2 - 10 4.667e+00 7.388e-01 2.280e+02 6.316 1.39e-09
## GenotypeR2 - 15 3.033e+00 7.388e-01 2.280e+02 4.106 5.62e-05
## GenotypeR3 - 1 2.833e+00 7.388e-01 2.280e+02 3.835 0.000163
## GenotypeR3 - 10 2.633e+00 7.388e-01 2.280e+02 3.564 0.000444
## GenotypeR3 - 14 -4.333e-01 7.388e-01 2.280e+02 -0.587 0.558103
## GenotypeR3 - 17 1.789e+00 7.388e-01 2.280e+02 2.421 0.016247
## GenotypeR3 - 19 1.200e+00 7.388e-01 2.280e+02 1.624 0.105710
## GenotypeR3 - 4 1.478e+00 7.388e-01 2.280e+02 2.000 0.046665
## GenotypeR3 - 7 -5.667e-01 7.388e-01 2.280e+02 -0.767 0.443878
## GenotypeR3 - 9 6.333e-01 7.388e-01 2.280e+02 0.857 0.392219
## GenotypeR4 - 1 3.367e+00 7.388e-01 2.280e+02 4.557 8.47e-06
## GenotypeR4 - 14 -9.667e-01 7.388e-01 2.280e+02 -1.308 0.192054
## GenotypeR4 - 6 3.067e+00 7.388e-01 2.280e+02 4.151 4.68e-05
## GenotypeR4 - 8 4.567e+00 7.388e-01 2.280e+02 6.181 2.91e-09
## GenotypeSC1 2.567e+00 7.388e-01 2.280e+02 3.474 0.000613
## GenotypeSC2 -1.500e+00 7.388e-01 2.280e+02 -2.030 0.043489
## GenotypeSC3 3.667e-01 7.388e-01 2.280e+02 0.496 0.620168
## GenotypeSC4 1.400e+00 7.388e-01 2.280e+02 1.895 0.059367
## EnvironmentE2 1.334e-01 7.492e-01 2.366e+02 0.178 0.858873
## EnvironmentE3 2.100e+00 7.492e-01 2.366e+02 2.803 0.005481
## EnvironmentE4 3.800e+00 7.492e-01 2.366e+02 5.072 7.94e-07
## EnvironmentE5 5.100e+00 7.492e-01 2.366e+02 6.808 8.10e-11
## EnvironmentE6 -1.833e+00 7.492e-01 2.366e+02 -2.447 0.015129
## GenotypeR1 - 20:EnvironmentE2 9.000e-01 1.045e+00 2.280e+02 0.861 0.389935
## GenotypeR2 - 10:EnvironmentE2 -4.700e+00 1.045e+00 2.280e+02 -4.498 1.09e-05
## GenotypeR2 - 15:EnvironmentE2 -4.967e+00 1.045e+00 2.280e+02 -4.754 3.54e-06
## GenotypeR3 - 1:EnvironmentE2 -3.733e+00 1.045e+00 2.280e+02 -3.573 0.000430
## GenotypeR3 - 10:EnvironmentE2 -4.667e-01 1.045e+00 2.280e+02 -0.447 0.655567
## GenotypeR3 - 14:EnvironmentE2 1.067e+00 1.045e+00 2.280e+02 1.021 0.308388
## GenotypeR3 - 17:EnvironmentE2 -1.922e+00 1.045e+00 2.280e+02 -1.840 0.067109
## GenotypeR3 - 19:EnvironmentE2 -2.800e+00 1.045e+00 2.280e+02 -2.680 0.007903
## GenotypeR3 - 4:EnvironmentE2 5.556e-01 1.045e+00 2.280e+02 0.532 0.595436
## GenotypeR3 - 7:EnvironmentE2 3.267e+00 1.045e+00 2.280e+02 3.126 0.001999
## GenotypeR3 - 9:EnvironmentE2 -2.333e-01 1.045e+00 2.280e+02 -0.223 0.823488
## GenotypeR4 - 1:EnvironmentE2 -4.667e-01 1.045e+00 2.280e+02 -0.447 0.655570
## GenotypeR4 - 14:EnvironmentE2 2.650e+00 1.045e+00 2.280e+02 2.536 0.011873
## GenotypeR4 - 6:EnvironmentE2 -1.033e+00 1.045e+00 2.280e+02 -0.989 0.323723
## GenotypeR4 - 8:EnvironmentE2 -3.900e+00 1.045e+00 2.280e+02 -3.733 0.000239
## GenotypeSC1:EnvironmentE2 -2.800e+00 1.045e+00 2.280e+02 -2.680 0.007903
## GenotypeSC2:EnvironmentE2 2.333e+00 1.045e+00 2.280e+02 2.233 0.026507
## GenotypeSC3:EnvironmentE2 4.000e-01 1.045e+00 2.280e+02 0.383 0.702198
## GenotypeSC4:EnvironmentE2 -2.800e+00 1.045e+00 2.280e+02 -2.680 0.007903
## GenotypeR1 - 20:EnvironmentE3 1.867e+00 1.045e+00 2.280e+02 1.787 0.075337
## GenotypeR2 - 10:EnvironmentE3 -4.933e+00 1.045e+00 2.280e+02 -4.722 4.09e-06
## GenotypeR2 - 15:EnvironmentE3 -2.533e+00 1.045e+00 2.280e+02 -2.425 0.016104
## GenotypeR3 - 1:EnvironmentE3 -5.000e-01 1.045e+00 2.280e+02 -0.479 0.632732
## GenotypeR3 - 10:EnvironmentE3 -1.200e+00 1.045e+00 2.280e+02 -1.148 0.251969
## GenotypeR3 - 14:EnvironmentE3 -1.733e+00 1.045e+00 2.280e+02 -1.659 0.098500
## GenotypeR3 - 17:EnvironmentE3 -1.056e+00 1.045e+00 2.280e+02 -1.010 0.313446
## GenotypeR3 - 19:EnvironmentE3 -2.400e+00 1.045e+00 2.280e+02 -2.297 0.022526
## GenotypeR3 - 4:EnvironmentE3 -3.611e+00 1.045e+00 2.280e+02 -3.456 0.000653
## GenotypeR3 - 7:EnvironmentE3 4.833e+00 1.045e+00 2.280e+02 4.626 6.25e-06
## GenotypeR3 - 9:EnvironmentE3 -5.222e-01 1.045e+00 2.280e+02 -0.500 0.617691
## GenotypeR4 - 1:EnvironmentE3 -3.133e+00 1.045e+00 2.280e+02 -2.999 0.003011
## GenotypeR4 - 14:EnvironmentE3 3.544e+00 1.045e+00 2.280e+02 3.392 0.000817
## GenotypeR4 - 6:EnvironmentE3 -4.333e+00 1.045e+00 2.280e+02 -4.147 4.75e-05
## GenotypeR4 - 8:EnvironmentE3 -8.367e+00 1.045e+00 2.280e+02 -8.008 5.96e-14
## GenotypeSC1:EnvironmentE3 -5.200e+00 1.045e+00 2.280e+02 -4.977 1.27e-06
## GenotypeSC2:EnvironmentE3 -3.667e-01 1.045e+00 2.280e+02 -0.351 0.725958
## GenotypeSC3:EnvironmentE3 -8.333e-01 1.045e+00 2.280e+02 -0.798 0.425949
## GenotypeSC4:EnvironmentE3 -1.900e+00 1.045e+00 2.280e+02 -1.818 0.070306
## GenotypeR1 - 20:EnvironmentE4 -6.467e+00 1.045e+00 2.280e+02 -6.189 2.78e-09
## GenotypeR2 - 10:EnvironmentE4 2.633e+00 1.045e+00 2.280e+02 2.520 0.012409
## GenotypeR2 - 15:EnvironmentE4 -4.300e+00 1.045e+00 2.280e+02 -4.115 5.40e-05
## GenotypeR3 - 1:EnvironmentE4 -3.867e+00 1.045e+00 2.280e+02 -3.701 0.000270
## GenotypeR3 - 10:EnvironmentE4 2.733e+00 1.045e+00 2.280e+02 2.616 0.009490
## GenotypeR3 - 14:EnvironmentE4 -4.867e+00 1.045e+00 2.280e+02 -4.658 5.43e-06
## GenotypeR3 - 17:EnvironmentE4 -1.756e+00 1.045e+00 2.280e+02 -1.680 0.094286
## GenotypeR3 - 19:EnvironmentE4 -3.833e+00 1.045e+00 2.280e+02 -3.669 0.000303
## GenotypeR3 - 4:EnvironmentE4 -5.378e+00 1.045e+00 2.280e+02 -5.147 5.71e-07
## GenotypeR3 - 7:EnvironmentE4 3.000e+00 1.045e+00 2.280e+02 2.871 0.004474
## GenotypeR3 - 9:EnvironmentE4 -1.250e+00 1.045e+00 2.280e+02 -1.196 0.232801
## GenotypeR4 - 1:EnvironmentE4 2.600e+00 1.045e+00 2.280e+02 2.488 0.013547
## GenotypeR4 - 14:EnvironmentE4 3.667e-01 1.045e+00 2.280e+02 0.351 0.725965
## GenotypeR4 - 6:EnvironmentE4 -8.033e+00 1.045e+00 2.280e+02 -7.689 4.42e-13
## GenotypeR4 - 8:EnvironmentE4 -4.883e+00 1.045e+00 2.280e+02 -4.674 5.06e-06
## GenotypeSC1:EnvironmentE4 4.667e-01 1.045e+00 2.280e+02 0.447 0.655560
## GenotypeSC2:EnvironmentE4 1.833e+00 1.045e+00 2.280e+02 1.755 0.080662
## GenotypeSC3:EnvironmentE4 -2.700e+00 1.045e+00 2.280e+02 -2.584 0.010386
## GenotypeSC4:EnvironmentE4 -5.633e+00 1.045e+00 2.280e+02 -5.392 1.74e-07
## GenotypeR1 - 20:EnvironmentE5 -2.400e+00 1.045e+00 2.280e+02 -2.297 0.022526
## GenotypeR2 - 10:EnvironmentE5 -9.000e+00 1.045e+00 2.280e+02 -8.614 1.18e-15
## GenotypeR2 - 15:EnvironmentE5 -4.433e+00 1.045e+00 2.280e+02 -4.243 3.21e-05
## GenotypeR3 - 1:EnvironmentE5 -9.533e+00 1.045e+00 2.280e+02 -9.124 < 2e-16
## GenotypeR3 - 10:EnvironmentE5 -6.200e+00 1.045e+00 2.280e+02 -5.934 1.09e-08
## GenotypeR3 - 14:EnvironmentE5 -4.033e+00 1.045e+00 2.280e+02 -3.860 0.000148
## GenotypeR3 - 17:EnvironmentE5 -7.756e+00 1.045e+00 2.280e+02 -7.423 2.26e-12
## GenotypeR3 - 19:EnvironmentE5 -6.900e+00 1.045e+00 2.280e+02 -6.604 2.78e-10
## GenotypeR3 - 4:EnvironmentE5 -3.978e+00 1.045e+00 2.280e+02 -3.807 0.000181
## GenotypeR3 - 7:EnvironmentE5 -3.300e+00 1.045e+00 2.280e+02 -3.158 0.001801
## GenotypeR3 - 9:EnvironmentE5 -5.000e+00 1.045e+00 2.280e+02 -4.785 3.07e-06
## GenotypeR4 - 1:EnvironmentE5 -1.027e+01 1.045e+00 2.280e+02 -9.826 < 2e-16
## GenotypeR4 - 14:EnvironmentE5 -5.433e+00 1.045e+00 2.280e+02 -5.200 4.43e-07
## GenotypeR4 - 6:EnvironmentE5 -1.009e+01 1.045e+00 2.280e+02 -9.656 < 2e-16
## GenotypeR4 - 8:EnvironmentE5 -1.180e+01 1.045e+00 2.280e+02 -11.294 < 2e-16
## GenotypeSC1:EnvironmentE5 -7.100e+00 1.045e+00 2.280e+02 -6.795 9.32e-11
## GenotypeSC2:EnvironmentE5 -2.544e+00 1.045e+00 2.280e+02 -2.435 0.015649
## GenotypeSC3:EnvironmentE5 -4.056e+00 1.045e+00 2.280e+02 -3.882 0.000136
## GenotypeSC4:EnvironmentE5 -4.933e+00 1.045e+00 2.280e+02 -4.722 4.09e-06
## GenotypeR1 - 20:EnvironmentE6 3.433e+00 1.045e+00 2.280e+02 3.286 0.001177
## GenotypeR2 - 10:EnvironmentE6 1.333e+00 1.045e+00 2.280e+02 1.276 0.203205
## GenotypeR2 - 15:EnvironmentE6 -3.900e+00 1.045e+00 2.280e+02 -3.733 0.000239
## GenotypeR3 - 1:EnvironmentE6 1.000e-01 1.045e+00 2.280e+02 0.096 0.923825
## GenotypeR3 - 10:EnvironmentE6 6.400e+00 1.045e+00 2.280e+02 6.125 3.93e-09
## GenotypeR3 - 14:EnvironmentE6 1.233e+00 1.045e+00 2.280e+02 1.180 0.239069
## GenotypeR3 - 17:EnvironmentE6 7.111e-01 1.045e+00 2.280e+02 0.681 0.496813
## GenotypeR3 - 19:EnvironmentE6 1.147e+01 1.045e+00 2.280e+02 10.975 < 2e-16
## GenotypeR3 - 4:EnvironmentE6 -1.778e+00 1.045e+00 2.280e+02 -1.701 0.090216
## GenotypeR3 - 7:EnvironmentE6 3.667e-01 1.045e+00 2.280e+02 0.351 0.725965
## GenotypeR3 - 9:EnvironmentE6 2.883e+00 1.045e+00 2.280e+02 2.760 0.006257
## GenotypeR4 - 1:EnvironmentE6 -1.667e+00 1.045e+00 2.280e+02 -1.595 0.112068
## GenotypeR4 - 14:EnvironmentE6 3.500e+00 1.045e+00 2.280e+02 3.350 0.000946
## GenotypeR4 - 6:EnvironmentE6 4.167e+00 1.045e+00 2.280e+02 3.988 8.98e-05
## GenotypeR4 - 8:EnvironmentE6 -3.500e+00 1.045e+00 2.280e+02 -3.350 0.000946
## GenotypeSC1:EnvironmentE6 -6.667e-01 1.045e+00 2.280e+02 -0.638 0.524084
## GenotypeSC2:EnvironmentE6 4.767e+00 1.045e+00 2.280e+02 4.562 8.27e-06
## GenotypeSC3:EnvironmentE6 -3.333e-02 1.045e+00 2.280e+02 -0.032 0.974579
## GenotypeSC4:EnvironmentE6 -8.000e-01 1.045e+00 2.280e+02 -0.766 0.444669
##
## (Intercept) ***
## GenotypeR1 - 20
## GenotypeR2 - 10 ***
## GenotypeR2 - 15 ***
## GenotypeR3 - 1 ***
## GenotypeR3 - 10 ***
## GenotypeR3 - 14
## GenotypeR3 - 17 *
## GenotypeR3 - 19
## GenotypeR3 - 4 *
## GenotypeR3 - 7
## GenotypeR3 - 9
## GenotypeR4 - 1 ***
## GenotypeR4 - 14
## GenotypeR4 - 6 ***
## GenotypeR4 - 8 ***
## GenotypeSC1 ***
## GenotypeSC2 *
## GenotypeSC3
## GenotypeSC4 .
## EnvironmentE2
## EnvironmentE3 **
## EnvironmentE4 ***
## EnvironmentE5 ***
## EnvironmentE6 *
## GenotypeR1 - 20:EnvironmentE2
## GenotypeR2 - 10:EnvironmentE2 ***
## GenotypeR2 - 15:EnvironmentE2 ***
## GenotypeR3 - 1:EnvironmentE2 ***
## GenotypeR3 - 10:EnvironmentE2
## GenotypeR3 - 14:EnvironmentE2
## GenotypeR3 - 17:EnvironmentE2 .
## GenotypeR3 - 19:EnvironmentE2 **
## GenotypeR3 - 4:EnvironmentE2
## GenotypeR3 - 7:EnvironmentE2 **
## GenotypeR3 - 9:EnvironmentE2
## GenotypeR4 - 1:EnvironmentE2
## GenotypeR4 - 14:EnvironmentE2 *
## GenotypeR4 - 6:EnvironmentE2
## GenotypeR4 - 8:EnvironmentE2 ***
## GenotypeSC1:EnvironmentE2 **
## GenotypeSC2:EnvironmentE2 *
## GenotypeSC3:EnvironmentE2
## GenotypeSC4:EnvironmentE2 **
## GenotypeR1 - 20:EnvironmentE3 .
## GenotypeR2 - 10:EnvironmentE3 ***
## GenotypeR2 - 15:EnvironmentE3 *
## GenotypeR3 - 1:EnvironmentE3
## GenotypeR3 - 10:EnvironmentE3
## GenotypeR3 - 14:EnvironmentE3 .
## GenotypeR3 - 17:EnvironmentE3
## GenotypeR3 - 19:EnvironmentE3 *
## GenotypeR3 - 4:EnvironmentE3 ***
## GenotypeR3 - 7:EnvironmentE3 ***
## GenotypeR3 - 9:EnvironmentE3
## GenotypeR4 - 1:EnvironmentE3 **
## GenotypeR4 - 14:EnvironmentE3 ***
## GenotypeR4 - 6:EnvironmentE3 ***
## GenotypeR4 - 8:EnvironmentE3 ***
## GenotypeSC1:EnvironmentE3 ***
## GenotypeSC2:EnvironmentE3
## GenotypeSC3:EnvironmentE3
## GenotypeSC4:EnvironmentE3 .
## GenotypeR1 - 20:EnvironmentE4 ***
## GenotypeR2 - 10:EnvironmentE4 *
## GenotypeR2 - 15:EnvironmentE4 ***
## GenotypeR3 - 1:EnvironmentE4 ***
## GenotypeR3 - 10:EnvironmentE4 **
## GenotypeR3 - 14:EnvironmentE4 ***
## GenotypeR3 - 17:EnvironmentE4 .
## GenotypeR3 - 19:EnvironmentE4 ***
## GenotypeR3 - 4:EnvironmentE4 ***
## GenotypeR3 - 7:EnvironmentE4 **
## GenotypeR3 - 9:EnvironmentE4
## GenotypeR4 - 1:EnvironmentE4 *
## GenotypeR4 - 14:EnvironmentE4
## GenotypeR4 - 6:EnvironmentE4 ***
## GenotypeR4 - 8:EnvironmentE4 ***
## GenotypeSC1:EnvironmentE4
## GenotypeSC2:EnvironmentE4 .
## GenotypeSC3:EnvironmentE4 *
## GenotypeSC4:EnvironmentE4 ***
## GenotypeR1 - 20:EnvironmentE5 *
## GenotypeR2 - 10:EnvironmentE5 ***
## GenotypeR2 - 15:EnvironmentE5 ***
## GenotypeR3 - 1:EnvironmentE5 ***
## GenotypeR3 - 10:EnvironmentE5 ***
## GenotypeR3 - 14:EnvironmentE5 ***
## GenotypeR3 - 17:EnvironmentE5 ***
## GenotypeR3 - 19:EnvironmentE5 ***
## GenotypeR3 - 4:EnvironmentE5 ***
## GenotypeR3 - 7:EnvironmentE5 **
## GenotypeR3 - 9:EnvironmentE5 ***
## GenotypeR4 - 1:EnvironmentE5 ***
## GenotypeR4 - 14:EnvironmentE5 ***
## GenotypeR4 - 6:EnvironmentE5 ***
## GenotypeR4 - 8:EnvironmentE5 ***
## GenotypeSC1:EnvironmentE5 ***
## GenotypeSC2:EnvironmentE5 *
## GenotypeSC3:EnvironmentE5 ***
## GenotypeSC4:EnvironmentE5 ***
## GenotypeR1 - 20:EnvironmentE6 **
## GenotypeR2 - 10:EnvironmentE6
## GenotypeR2 - 15:EnvironmentE6 ***
## GenotypeR3 - 1:EnvironmentE6
## GenotypeR3 - 10:EnvironmentE6 ***
## GenotypeR3 - 14:EnvironmentE6
## GenotypeR3 - 17:EnvironmentE6
## GenotypeR3 - 19:EnvironmentE6 ***
## GenotypeR3 - 4:EnvironmentE6 .
## GenotypeR3 - 7:EnvironmentE6
## GenotypeR3 - 9:EnvironmentE6 **
## GenotypeR4 - 1:EnvironmentE6
## GenotypeR4 - 14:EnvironmentE6 ***
## GenotypeR4 - 6:EnvironmentE6 ***
## GenotypeR4 - 8:EnvironmentE6 ***
## GenotypeSC1:EnvironmentE6
## GenotypeSC2:EnvironmentE6 ***
## GenotypeSC3:EnvironmentE6
## GenotypeSC4:EnvironmentE6
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Correlation matrix not shown by default, as p = 120 > 12.
## Use print(x, correlation=TRUE) or
## vcov(x) if you need itsummary(model_biomass)## Linear mixed model fit by REML. t-tests use Satterthwaite's method [
## lmerModLmerTest]
## Formula: Biomass ~ Genotype * Environment + (1 | Environment:Replications)
## Data: data
##
## REML criterion at convergence: 3081.2
##
## Scaled residuals:
## Min 1Q Median 3Q Max
## -2.9173 -0.3683 0.0200 0.3334 2.4094
##
## Random effects:
## Groups Name Variance Std.Dev.
## Environment:Replications (Intercept) 918.7 30.31
## Residual 12150.9 110.23
## Number of obs: 360, groups: Environment:Replications, 18
##
## Fixed effects:
## Estimate Std. Error df t value Pr(>|t|)
## (Intercept) 929.667 66.004 219.402 14.085 < 2e-16 ***
## GenotypeR1 - 20 -56.333 90.003 228.000 -0.626 0.532005
## GenotypeR2 - 10 596.833 90.003 228.000 6.631 2.38e-10 ***
## GenotypeR2 - 15 -289.833 90.003 228.000 -3.220 0.001468 **
## GenotypeR3 - 1 233.333 90.003 228.000 2.592 0.010144 *
## GenotypeR3 - 10 -50.000 90.003 228.000 -0.556 0.579074
## GenotypeR3 - 14 503.667 90.003 228.000 5.596 6.26e-08 ***
## GenotypeR3 - 17 139.000 90.003 228.000 1.544 0.123882
## GenotypeR3 - 19 -65.333 90.003 228.000 -0.726 0.468645
## GenotypeR3 - 4 223.167 90.003 228.000 2.480 0.013879 *
## GenotypeR3 - 7 69.583 90.003 228.000 0.773 0.440253
## GenotypeR3 - 9 -65.833 90.003 228.000 -0.731 0.465253
## GenotypeR4 - 1 575.333 90.003 228.000 6.392 9.12e-10 ***
## GenotypeR4 - 14 -192.317 90.003 228.000 -2.137 0.033682 *
## GenotypeR4 - 6 150.833 90.003 228.000 1.676 0.095136 .
## GenotypeR4 - 8 581.833 90.003 228.000 6.465 6.10e-10 ***
## GenotypeSC1 339.667 90.003 228.000 3.774 0.000205 ***
## GenotypeSC2 341.583 90.003 228.000 3.795 0.000189 ***
## GenotypeSC3 385.333 90.003 228.000 4.281 2.74e-05 ***
## GenotypeSC4 215.500 90.003 228.000 2.394 0.017459 *
## EnvironmentE2 -167.500 93.344 219.402 -1.794 0.074120 .
## EnvironmentE3 -334.250 93.344 219.402 -3.581 0.000422 ***
## EnvironmentE4 -234.667 93.344 219.402 -2.514 0.012655 *
## EnvironmentE5 -650.667 93.344 219.402 -6.971 3.65e-11 ***
## EnvironmentE6 -788.667 93.344 219.402 -8.449 4.07e-15 ***
## GenotypeR1 - 20:EnvironmentE2 101.917 127.284 228.000 0.801 0.424137
## GenotypeR2 - 10:EnvironmentE2 -168.850 127.284 228.000 -1.327 0.185981
## GenotypeR2 - 15:EnvironmentE2 169.667 127.284 228.000 1.333 0.183870
## GenotypeR3 - 1:EnvironmentE2 -302.667 127.284 228.000 -2.378 0.018238 *
## GenotypeR3 - 10:EnvironmentE2 205.083 127.284 228.000 1.611 0.108514
## GenotypeR3 - 14:EnvironmentE2 -728.833 127.284 228.000 -5.726 3.22e-08 ***
## GenotypeR3 - 17:EnvironmentE2 -358.167 127.284 228.000 -2.814 0.005322 **
## GenotypeR3 - 19:EnvironmentE2 356.167 127.284 228.000 2.798 0.005578 **
## GenotypeR3 - 4:EnvironmentE2 -56.000 127.284 228.000 -0.440 0.660382
## GenotypeR3 - 7:EnvironmentE2 76.417 127.284 228.000 0.600 0.548860
## GenotypeR3 - 9:EnvironmentE2 243.917 127.284 228.000 1.916 0.056575 .
## GenotypeR4 - 1:EnvironmentE2 -8.000 127.284 228.000 -0.063 0.949940
## GenotypeR4 - 14:EnvironmentE2 286.150 127.284 228.000 2.248 0.025525 *
## GenotypeR4 - 6:EnvironmentE2 -299.333 127.284 228.000 -2.352 0.019540 *
## GenotypeR4 - 8:EnvironmentE2 -533.850 127.284 228.000 -4.194 3.92e-05 ***
## GenotypeSC1:EnvironmentE2 -310.167 127.284 228.000 -2.437 0.015584 *
## GenotypeSC2:EnvironmentE2 -576.583 127.284 228.000 -4.530 9.52e-06 ***
## GenotypeSC3:EnvironmentE2 -367.000 127.284 228.000 -2.883 0.004312 **
## GenotypeSC4:EnvironmentE2 -356.000 127.284 228.000 -2.797 0.005600 **
## GenotypeR1 - 20:EnvironmentE3 285.917 127.284 228.000 2.246 0.025644 *
## GenotypeR2 - 10:EnvironmentE3 -525.250 127.284 228.000 -4.127 5.16e-05 ***
## GenotypeR2 - 15:EnvironmentE3 701.917 127.284 228.000 5.515 9.44e-08 ***
## GenotypeR3 - 1:EnvironmentE3 115.250 127.284 228.000 0.905 0.366180
## GenotypeR3 - 10:EnvironmentE3 406.583 127.284 228.000 3.194 0.001600 **
## GenotypeR3 - 14:EnvironmentE3 -267.333 127.284 228.000 -2.100 0.036802 *
## GenotypeR3 - 17:EnvironmentE3 192.167 127.284 228.000 1.510 0.132492
## GenotypeR3 - 19:EnvironmentE3 243.750 127.284 228.000 1.915 0.056743 .
## GenotypeR3 - 4:EnvironmentE3 112.667 127.284 228.000 0.885 0.377003
## GenotypeR3 - 7:EnvironmentE3 348.667 127.284 228.000 2.739 0.006644 **
## GenotypeR3 - 9:EnvironmentE3 241.083 127.284 228.000 1.894 0.059483 .
## GenotypeR4 - 1:EnvironmentE3 -621.417 127.284 228.000 -4.882 1.97e-06 ***
## GenotypeR4 - 14:EnvironmentE3 615.233 127.284 228.000 4.834 2.46e-06 ***
## GenotypeR4 - 6:EnvironmentE3 -284.750 127.284 228.000 -2.237 0.026246 *
## GenotypeR4 - 8:EnvironmentE3 -343.250 127.284 228.000 -2.697 0.007525 **
## GenotypeSC1:EnvironmentE3 -156.417 127.284 228.000 -1.229 0.220384
## GenotypeSC2:EnvironmentE3 -282.667 127.284 228.000 -2.221 0.027351 *
## GenotypeSC3:EnvironmentE3 105.750 127.284 228.000 0.831 0.406945
## GenotypeSC4:EnvironmentE3 10.583 127.284 228.000 0.083 0.933807
## GenotypeR1 - 20:EnvironmentE4 -408.667 127.284 228.000 -3.211 0.001515 **
## GenotypeR2 - 10:EnvironmentE4 -690.833 127.284 228.000 -5.427 1.46e-07 ***
## GenotypeR2 - 15:EnvironmentE4 508.833 127.284 228.000 3.998 8.64e-05 ***
## GenotypeR3 - 1:EnvironmentE4 -114.583 127.284 228.000 -0.900 0.368954
## GenotypeR3 - 10:EnvironmentE4 -444.500 127.284 228.000 -3.492 0.000575 ***
## GenotypeR3 - 14:EnvironmentE4 -792.667 127.284 228.000 -6.228 2.26e-09 ***
## GenotypeR3 - 17:EnvironmentE4 -594.000 127.284 228.000 -4.667 5.22e-06 ***
## GenotypeR3 - 19:EnvironmentE4 -298.667 127.284 228.000 -2.346 0.019810 *
## GenotypeR3 - 4:EnvironmentE4 -363.500 127.284 228.000 -2.856 0.004689 **
## GenotypeR3 - 7:EnvironmentE4 -367.583 127.284 228.000 -2.888 0.004251 **
## GenotypeR3 - 9:EnvironmentE4 -282.667 127.284 228.000 -2.221 0.027351 *
## GenotypeR4 - 1:EnvironmentE4 -585.333 127.284 228.000 -4.599 7.05e-06 ***
## GenotypeR4 - 14:EnvironmentE4 -61.850 127.284 228.000 -0.486 0.627490
## GenotypeR4 - 6:EnvironmentE4 -555.833 127.284 228.000 -4.367 1.91e-05 ***
## GenotypeR4 - 8:EnvironmentE4 -769.833 127.284 228.000 -6.048 5.94e-09 ***
## GenotypeSC1:EnvironmentE4 -550.667 127.284 228.000 -4.326 2.27e-05 ***
## GenotypeSC2:EnvironmentE4 -617.583 127.284 228.000 -4.852 2.27e-06 ***
## GenotypeSC3:EnvironmentE4 -547.833 127.284 228.000 -4.304 2.49e-05 ***
## GenotypeSC4:EnvironmentE4 -58.333 127.284 228.000 -0.458 0.647179
## GenotypeR1 - 20:EnvironmentE5 222.833 127.284 228.000 1.751 0.081346 .
## GenotypeR2 - 10:EnvironmentE5 -618.833 127.284 228.000 -4.862 2.17e-06 ***
## GenotypeR2 - 15:EnvironmentE5 554.833 127.284 228.000 4.359 1.98e-05 ***
## GenotypeR3 - 1:EnvironmentE5 -145.167 127.284 228.000 -1.140 0.255277
## GenotypeR3 - 10:EnvironmentE5 -6.000 127.284 228.000 -0.047 0.962444
## GenotypeR3 - 14:EnvironmentE5 -424.167 127.284 228.000 -3.332 0.001004 **
## GenotypeR3 - 17:EnvironmentE5 25.500 127.284 228.000 0.200 0.841394
## GenotypeR3 - 19:EnvironmentE5 -69.167 127.284 228.000 -0.543 0.587382
## GenotypeR3 - 4:EnvironmentE5 -31.917 127.284 228.000 -0.251 0.802232
## GenotypeR3 - 7:EnvironmentE5 223.917 127.284 228.000 1.759 0.079887 .
## GenotypeR3 - 9:EnvironmentE5 228.833 127.284 228.000 1.798 0.073529 .
## GenotypeR4 - 1:EnvironmentE5 -258.833 127.284 228.000 -2.034 0.043159 *
## GenotypeR4 - 14:EnvironmentE5 151.817 127.284 228.000 1.193 0.234211
## GenotypeR4 - 6:EnvironmentE5 9.167 127.284 228.000 0.072 0.942651
## GenotypeR4 - 8:EnvironmentE5 -705.667 127.284 228.000 -5.544 8.15e-08 ***
## GenotypeSC1:EnvironmentE5 -182.667 127.284 228.000 -1.435 0.152626
## GenotypeSC2:EnvironmentE5 -345.583 127.284 228.000 -2.715 0.007134 **
## GenotypeSC3:EnvironmentE5 -356.333 127.284 228.000 -2.800 0.005557 **
## GenotypeSC4:EnvironmentE5 -24.333 127.284 228.000 -0.191 0.848560
## GenotypeR1 - 20:EnvironmentE6 372.083 127.284 228.000 2.923 0.003813 **
## GenotypeR2 - 10:EnvironmentE6 -63.833 127.284 228.000 -0.502 0.616501
## GenotypeR2 - 15:EnvironmentE6 356.333 127.284 228.000 2.800 0.005557 **
## GenotypeR3 - 1:EnvironmentE6 -48.833 127.284 228.000 -0.384 0.701591
## GenotypeR3 - 10:EnvironmentE6 476.833 127.284 228.000 3.746 0.000227 ***
## GenotypeR3 - 14:EnvironmentE6 -404.833 127.284 228.000 -3.181 0.001674 **
## GenotypeR3 - 17:EnvironmentE6 27.833 127.284 228.000 0.219 0.827102
## GenotypeR3 - 19:EnvironmentE6 750.833 127.284 228.000 5.899 1.31e-08 ***
## GenotypeR3 - 4:EnvironmentE6 315.833 127.284 228.000 2.481 0.013812 *
## GenotypeR3 - 7:EnvironmentE6 -95.583 127.284 228.000 -0.751 0.453460
## GenotypeR3 - 9:EnvironmentE6 174.833 127.284 228.000 1.374 0.170925
## GenotypeR4 - 1:EnvironmentE6 -429.333 127.284 228.000 -3.373 0.000873 ***
## GenotypeR4 - 14:EnvironmentE6 242.817 127.284 228.000 1.908 0.057690 .
## GenotypeR4 - 6:EnvironmentE6 229.667 127.284 228.000 1.804 0.072494 .
## GenotypeR4 - 8:EnvironmentE6 -361.083 127.284 228.000 -2.837 0.004967 **
## GenotypeSC1:EnvironmentE6 -298.667 127.284 228.000 -2.346 0.019810 *
## GenotypeSC2:EnvironmentE6 -377.583 127.284 228.000 -2.966 0.003333 **
## GenotypeSC3:EnvironmentE6 -387.333 127.284 228.000 -3.043 0.002616 **
## GenotypeSC4:EnvironmentE6 -210.500 127.284 228.000 -1.654 0.099548 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Correlation matrix not shown by default, as p = 120 > 12.
## Use print(x, correlation=TRUE) or
## vcov(x) if you need it