Lab Notebook Guide

200-Level Biology Lab · Complete Reference for Students


How to use this guide

Read this before your first lab and refer back to it throughout the semester. Each section below covers one part of your notebook entry: what belongs there, what good entries look like, and what will cost you points.


1. Overview & purpose of your notebook

Your lab notebook is a scientific record, not a homework assignment. Real researchers keep notebooks because science must be reproducible, transparent, and honest. Treat your notebook as a document that a colleague could pick up and use to understand exactly what you did, what you found, and what you think it means.

How notebook entries are graded

Fall semester: Sections are critically graded in sequence — one section per lab, rotating through Title & Purpose (Lab 1), Background (Lab 2), Procedure (Lab 3), Results (Lab 4), Discussion (Lab 5), and Conclusion (Lab 6). All other sections that week are completion-graded.

Spring semester: All sections of every entry are critically graded.

Weekly completion grading counts toward your participation grade regardless of semester.


2. AI use policy

Permitted with disclosure: AI tools may be used to help you find background sources, check grammar, or understand an unfamiliar concept. If you use AI assistance anywhere in your notebook, note it — for example: “Used AI to locate sources for Background section.”

Not permitted: Using AI to generate or substantially draft any written section of your notebook — particularly the Background, Results interpretation, or Discussion — defeats the purpose of this course. Your Discussion must reflect your reasoning about your specific data. An AI has no idea what Figure 2 in your notebook shows or what prediction you wrote before lab.

How this is assessed: Strong AI-generated writing tends to be fluent but generic — it describes what enzymes do in general, not what your enzyme did in your experiment today. Grading specifically looks for direct reference to your data, your prediction, and your lab section’s results. Writing that could have been produced without running the experiment will not receive full credit regardless of how polished it is.


3. Notebook mechanics

3a. Setting up a new entry

  • Copy the Entry Template for each new experiment.
  • Go to the end of the document: Insert > Break > Section break (next page), then paste the template.
  • Every experiment must include all template sections — even if a section is brief.
  • Multi-week experiments with different goals should be entered as separate entries with different lab numbers. When results from a previous week arrive (e.g., incubated plates), add a new bold date [MM-DD-YY] to that week’s Results section rather than creating a new entry.
  • Link back to earlier entries using Insert > Link > Headings — useful when this week’s results depend on a previous lab.

3b. Title formatting & Table of Contents

  • The entry date and title must use the modified Heading 1 style (Red, Underlined). This makes entries searchable in the Outline tab and populates the Table of Contents automatically.
  • To refresh the TOC after adding a new entry: click the circular arrow at the top left corner of the TOC.
  • Click any TOC entry to jump directly to that lab.

3c. Record-keeping rules

⚠️ Never delete anything. A lab notebook is a permanent record. If you misinterpreted data or made an error, do not remove the original entry.

Instead: add a dated correction [MM-DD-YY] in a new highlight color, and use strikethrough on the incorrect text to show it should not be used — but preserve it for the record.

The same rule applies to protocol changes: do not delete original instructions. Strike through what changed and note the modification in a different color font with your reason.

3d. Weekly maintenance & participation

  • You may download a copy of the digital notebook to work offline, but do not remove the original.
  • Update the online copy weekly. Entries are checked regularly; weekly completion grading counts toward participation.
  • Use the Highlighter to flag important results, changes, conclusions, concerns, and questions.
  • An optional paper copy is fine for in-lab notes — informal, ungraded, never collected. Always date paper entries.

4. Title & Purpose

Critically graded: Lab 1 (Fall) · All entries (Spring)

Title

Create a concise, descriptive title — do not copy the generic title from the protocol. A good title names the organism or system, the key variable or technique, and what is being determined.

Do this: “Spectrophotometric quantification of protein concentration in cell lysates using Bradford assay”

Not this: “Protein Lab” or “Lab 2: Bradford Assay”

Purpose

State what you will do and why — in your own words, in 2–4 sentences. Strong purposes are specific enough that someone could tell your experiment apart from a different experiment in the same field.

Tip: Break long purposes into numbered Goals (Goal 1, Goal 2…) when the experiment has multiple distinct objectives. Each goal should name the technique and what it will achieve.

Do this: “DNA will be extracted and purified from aquatic invertebrate tissue samples (Geneaid kit) for downstream PCR-based species identification. Goal 1: Extract genomic DNA. Goal 2: Purify and concentrate using the Zymo Clean & Concentrator. Goal 3: Assess quality and quantity by NanoDrop.”

Not this: “The purpose of this lab is to learn about DNA extraction.”


5. Background / Theory

Critically graded: Lab 2 (Fall) · All entries (Spring)

The Background explains why this experiment makes scientific sense — what a reader needs to know to understand what you did and what your results mean. It is not a summary of the pre-lab lecture, and it is not a copy of the protocol’s introduction.

Write from sources, not from lecture notes. Your Background should be grounded in cited sources (2 or more credible references). Summarizing what your instructor said in pre-lab is not sufficient — it does not demonstrate that you engaged with the scientific literature, and it produces generic writing that looks the same across the whole class.

What to include

  • The biological concept being investigated — explained with enough depth that the mechanism is clear, not just named.
  • The technique(s) being used — what they measure, how they work, and why they are appropriate for this question.
  • Connection to this experiment — why does this concept matter for understanding what you will do today? Every sentence in your Background should be traceable to something relevant in your experiment.
  • Diagrams — helpful when concepts have spatial or mechanistic structure. You may use figures from the protocol, but describe them in your own words.
  • Citations — all claims must be attributed. Format citations consistently per your course style.

AI note: This is the section most vulnerable to AI generation. AI-produced Background text tends to be accurate but generic — it describes the concept in general, not in the context of your specific experiment. Grading looks for your voice, your source choices, and your connection to what you actually did.


6. Procedure / Methods

Critically graded: Lab 3 (Fall) · All entries (Spring)

Paste in the protocol procedure. Your notebook records what actually happened, not just what was planned. A reader should be able to reproduce your experiment from your Methods section alone.

Recording what actually happened

  • Record actual volumes, concentrations, and conditions used — not the planned values if they differed.
  • Note any deviations from the protocol with a brief reason. Do not delete the original instruction — strike it through and add your change in a different color font.
  • Write in past tense, third person or passive voice: “Samples were incubated at 37°C for 30 minutes” — not “Incubate samples.”
  • Set up your data table or recording structure before you begin collecting data.

Do this: Strike through: “Add 200 µL buffer A.” — New color note: “400 µL buffer A used — original volume insufficient to cover sample [03-15-25]”

Not this: Delete the original step and replace it, or add a note at the end with no indication of what changed.


7. Results

Critically graded: Lab 4 (Fall) · All entries (Spring)

Results are observations and data only — no interpretation, no explanation of why. Save your analysis for the Discussion. A reader should be able to look at your Results section and form their own interpretation before reading yours.

Standards for every figure and table

  • Title/legend: Every figure and table must have a descriptive title that stands alone. A reader should understand what is shown without reading the surrounding text.
  • Labels and units: All axes, columns, and rows must be labeled with units. No unlabeled data.
  • Keys and annotations: If colors, symbols, or abbreviations are used, include a key. Annotate gels, images, and photographs to identify lanes, samples, or structures.
  • Numbering: Number all figures and tables sequentially (Figure 1, Figure 2, Table 1…). Every figure and table must be referenced by number in your Discussion.

What belongs in Results

  • Raw data tables with complete headers and units
  • Graphs with labeled axes, units, and legends — use the appropriate graph type for your data
  • Calculations with formula, substitution, and result shown — units tracked throughout
  • Statistical analyses with the test name, result, and p-value (or equivalent) stated
  • Photographs, gel images, or screenshots — annotated to identify what is shown

Objectivity rule: If your sentence explains why a result occurred, it belongs in the Discussion, not here. Results state what was observed; Discussion explains what it means.


8. Discussion

Critically graded: Lab 5 (Fall) · All entries (Spring) · Highest weight

Your Discussion is where you think in writing — not summarize what you did, and not repeat what was covered in pre-lab. A strong Discussion makes a scientific argument: it uses your specific results as evidence, evaluates whether they supported your prediction, and connects what you found to the biological concept at stake.

Every claim must be grounded in your data. Every figure and table in your Results must be referenced by number at least once.

A Discussion that could have been written before the experiment was run will not receive full credit.

Answer these six questions in every Discussion

1. Brief summary In 2–3 sentences, summarize what you did and what you found. This is your only summary — the rest of the Discussion moves forward from here. One sentence on purpose; one on the key result. Do not restate every procedural step.

2. Prediction evaluation (Required) Return to the prediction you wrote before lab. Was it supported or refuted by your results? Cite the specific figure or table number that confirms or contradicts your prediction and explain why. This question must be answered in every Discussion.

3. Biological concept connection [cite figures/tables] Interpret your results in terms of the biological concept this experiment was designed to investigate. Do not just name the concept — explain what your specific data tells you about how it works, or does not work, in this system.

4. Unexpected or notable results [cite figures/tables] Were there results that surprised you or did not fit the expected pattern? Provide a scientifically plausible explanation. If all results were as expected, explain why that outcome supports the underlying concept.

5. Error analysis Identify one specific source of error or limitation. Explain the direction it would likely push your results (overestimate, underestimate, or introduce variability) and why. “Human error” and “we may have made mistakes” are not acceptable answers.

6. Future directions Propose one specific improvement or follow-up experiment. Name the variable, condition, or technique you would change and what question it would answer.

Strong vs. weak Discussion language

“Figure 1 shows enzyme activity peaked at 37°C, which supports my prediction that activity would decline above body temperature due to denaturation.”

“The results showed what was expected based on the background information about enzymes.”


“The unexpectedly low absorbance in Trial 3 (Table 2) may reflect incomplete mixing of the substrate, which would underestimate true reaction rate.”

“There may have been human error during the experiment that affected our results.”


“A follow-up experiment varying pH in 0.5-unit increments around the optimum would allow us to define the active site’s tolerance more precisely.”

“In the future we could improve our technique and repeat the experiment more carefully.”


9. Conclusion

Critically graded: Lab 6 (Fall) · All entries (Spring)

The Conclusion is brief (5–8 sentences) and synthetic — it does not re-summarize the Discussion. Its purpose is to distill the single most important finding and its significance.

What to include

  • Main finding: State the single most important result and its biological significance in 1–2 sentences. Do not re-list all results.
  • Hypothesis resolution: Clearly state whether the hypothesis was supported or refuted, with a one-sentence justification. Do not repeat your full error analysis.
  • Forward-looking statement: Identify one specific follow-up question or application that arises from your findings.

Common error: Conclusions that simply compress the Discussion add no value. A reader who has read your Discussion should gain new perspective from your Conclusion — a synthesis, not a repetition.


Quick reference: what goes where

Section Belongs here Does not belong here
Title & Purpose Specific technique + organism + variable; numbered goals Generic lab name; vague statements like “learn about DNA”
Background Cited sources; mechanism explained; direct link to this experiment Pre-lab lecture summary; copied protocol text; uncited claims
Procedure What actually happened; actual volumes; strikethrough changes Future tense; planned vs. actual values undifferentiated
Results Data tables, graphs, calculations, stats — all labeled and numbered Interpretation; explanations of why results occurred
Discussion Reasoning from your data; prediction evaluation; error direction Generic biology; pre-lab content; vague “human error”
Conclusion Single key finding; hypothesis resolution; one forward question A compressed re-summary of the Discussion

This document is a reference, not a checklist. The goal is not to answer each prompt mechanically but to develop the habit of scientific thinking: making claims, citing evidence, and acknowledging uncertainty honestly.