LACS figures and score

Table of Content:

• 1. Plot the Secondary Chemical Shift, regression line
• 2. Create a score system to identify the best predictable residues.

Note: * The working directory is:

## [1] "/Users/bill/Dropbox/NMRtools/R"

• The data directory and files are:

## [1] "../data/"

##  [1] "avgCov_BC.csv"          "avgCov.csv"            
##  [3] "CarbonCovTable_BC.csv"  "CarbonCovTable.csv"    
##  [5] "Generated-NA"           "NMRref_cache"          
##  [7] "NMRref_files"           "NMRref.html"           
##  [9] "NMRref.Rmd"             "NMRref2_cache"         
## [11] "NMRref2.Rmd"            "procorr.csv"           
## [13] "RefDB.caStat_RefDB.csv" "RefDB.caStat.csv"      
## [15] "RefDB.cbStat_RefDB.csv" "RefDB.cbStat.csv"      
## [17] "rsconnect"              "testDataSets"          
## [19] "testDataSets1"

1. Plot the Secondary Chemical Shift, regression line

## [1] "A"

## [1] "R"

## [1] "N"

## [1] "D"

## [1] "Q"

## [1] "E"

## [1] "H"

## [1] "I"

## [1] "L"

## [1] "K"

## [1] "M"

## [1] "F"

## [1] "P"

## [1] "S"

## [1] "T"

## [1] "Y"

## [1] "W"

## [1] "V"

2. Create a score system to identify the best predictable residues.

##         dd.b       dd.b
## A 0.38342093 0.38342093
## R 0.63959183 0.63959183
## N 0.16610086 0.16610086
## D 0.52917425 0.52917425
## Q 0.60913434 0.60913434
## E 0.03243072 0.03243072
## H 0.47410668 0.47410668
## I 0.17984941 0.17984941
## L 0.50363853 0.50363853
## K 0.28256631 0.28256631
## M 0.07571180 0.07571180
## F 0.06125988 0.06125988
## P 0.45053695 0.45053695
## S 0.68769925 0.68769925
## T 0.55092505 0.55092505
## Y 0.51097283 0.51097283
## W 0.25859002 0.25859002
## V 0.26431125 0.26431125