Ringkasan analisis: 32 skenario SAE — 2 metode seleksi aux (Backward vs Top-n/10) × 4 model (EBLUP, GLMM-Logit, EB Beta-Binomial, HB Beta) × 4 partisi (All, RSE Natural Break, RSE Equal Size, Cluster-Aux). Baseline: Direct Estimator.


1. Library & Cek Paket

Library

# Load urutan: MASS & car DULU, baru dplyr (cegah masking select/recode)
library(MASS)
library(car)
library(readxl)
library(dplyr)
library(tidyr)
library(ggplot2)
library(scales)
library(patchwork)
library(sae)        # mseFH
library(glmmTMB)    # GLMM binomial
library(classInt)   # Jenks Natural Breaks
library(factoextra)
library(knitr)
library(kableExtra)

# Ikat namespace kritis
select <- dplyr::select
recode <- dplyr::recode

Cek JAGS & saeHB

has_jags <- tryCatch({
  library(rjags); library(saeHB); TRUE
}, error = function(e) {
  message("saeHB/JAGS tidak tersedia — skenario HB Beta akan fallback ke direct.")
  FALSE
})
cat("Status JAGS/saeHB:", ifelse(has_jags, "Tersedia", "Tidak tersedia"), "\n")
## Status JAGS/saeHB: Tersedia

2. Load Data & Persiapan

Load Data

Estimasi_531  <- read_excel("C:/Users/User/Downloads/Hasil_sulawesi_KabKota.xlsx")
Podes_kab2024 <- read_excel("C:/Users/User/Downloads/Podes_kab_lengkap.xlsx")
Data_Penduduk <- read_excel("C:/Users/User/Downloads/Data_Penduduk.xlsx")

Estimasi_531  <- Estimasi_531  %>% mutate(Kako = sprintf("%04d", Kako))
Podes_kab2024 <- Podes_kab2024 %>% mutate(kode_kab = sprintf("%04s", kode_kab))

df_gabungan <- Estimasi_531 %>%
  left_join(Podes_kab2024, by = c("Kako" = "kode_kab")) %>%
  dplyr::select(Kako, Estimasi, RSE, starts_with("X"))

df_gabungan$Kako <- as.numeric(df_gabungan$Kako)
df_final <- df_gabungan %>% left_join(Data_Penduduk, by = "Kako")

cat("Jumlah domain:", nrow(df_final), "\n")
## Jumlah domain: 81
cat("Jumlah variabel:", ncol(df_final), "\n")
## Jumlah variabel: 112

Variabel Rasio

df_final <- df_final %>%
  mutate(
    X6  = X6_jumlah  / Jumlah_Penduduk * 1000,
    X7  = X7_jumlah  / Jumlah_Penduduk * 1000,
    X10 = X10_jumlah / Jumlah_Penduduk * 1000,
    X33 = X33_jumlah / Jumlah_Penduduk * 1000,
    X11 = X11_jumlah / Jumlah_P * 1000,
    X12 = X12_jumlah / Jumlah_P * 1000,
    X27 = X27_jumlah / Jumlah_P * 1000,
    X28 = X28_jumlah / Jumlah_P * 1000,
    X29 = X29_jumlah / Jumlah_P * 1000,
    X30 = X30_jumlah / Jumlah_P * 1000,
    X31 = X31_jumlah / Jumlah_P * 1000,
    X35 = X35_jumlah / Jumlah_P * 1000,
    X36 = X36_jumlah / Jumlah_P * 1000
  )

Pre-filter Kandidat Global

eps_logit <- 1e-4

df_base <- df_final %>%
  mutate(
    vardir  = (RSE / 100 * Estimasi)^2,
    y_prop  = pmax(pmin(Estimasi / 100, 1 - eps_logit), eps_logit),
    y_logit = log(y_prop / (1 - y_prop))
  ) %>%
  as.data.frame()

# ── Kandidat aux: HANYA kolom yang diawali "X" ───────────────────────────
# RSE_direct_col, grup_jenks, cluster_*, dll yang ditambahkan kemudian
# otomatis TIDAK masuk karena tidak berawalan X
kandidat_vars <- names(df_base)[startsWith(names(df_base), "X")]

# ── excl_always: otomatis semua kolom SELAIN X* ──────────────────────────
# Diupdate di setiap fungsi seleksi agar mencakup kolom baru yang
# ditambahkan setelah chunk ini (RSE_direct_col, grup_*, cluster_*)
excl_always <- setdiff(names(df_base), kandidat_vars)

cat("Variabel kandidat (", length(kandidat_vars), "):\n",
    paste(kandidat_vars, collapse = ", "), "\n")
## Variabel kandidat ( 119 ):
##  X1, X2, X8, X9, X13, X14, X15, X16, X17, X18, X19, X21, X22, X23, X24, X25, X26, X32, X37, X38, X39, X40, X41, X43, X44, X45, X1_jumlah, X1_mean, X2_jumlah, X2_mean, X8_jumlah, X8_mean, X9_jumlah, X9_mean, X13_jumlah, X13_mean, X14_jumlah, X14_mean, X15_jumlah, X15_mean, X16_jumlah, X16_mean, X17_jumlah, X17_mean, X18_jumlah, X18_mean, X19_jumlah, X19_mean, X21_jumlah, X21_mean, X22_jumlah, X22_mean, X23_jumlah, X23_mean, X24_jumlah, X24_mean, X25_jumlah, X25_mean, X26_jumlah, X26_mean, X32_jumlah, X32_mean, X34_jumlah, X34_mean, X37_jumlah, X37_mean, X38_jumlah, X38_mean, X39_jumlah, X39_mean, X40_jumlah, X40_mean, X41_jumlah, X41_mean, X43_jumlah, X43_mean, X44_jumlah, X44_mean, X45_jumlah, X45_mean, X6_jumlah, X6_mean, X7_jumlah, X7_mean, X10_jumlah, X10_mean, X11_jumlah, X11_mean, X12_jumlah, X12_mean, X27_jumlah, X27_mean, X28_jumlah, X28_mean, X29_jumlah, X29_mean, X30_jumlah, X30_mean, X31_jumlah, X31_mean, X33_jumlah, X33_mean, X35_jumlah, X35_mean, X36_jumlah, X36_mean, X6, X7, X10, X33, X11, X12, X27, X28, X29, X30, X31, X35, X36
cat("\nTotal dikecualikan:", length(excl_always), "kolom\n")
## 
## Total dikecualikan: 9 kolom

3. Fungsi Pembantu

Seleksi A1: Backward

# Helper: pilih 1 representatif terbaik per grup X (X19, X19_mean, X19_jumlah → 1)
# Pemilihan berdasarkan |cor| tertinggi ke y_col pada data segmen berjalan
pilih_per_grup <- function(df, kandidat, y_col) {
  get_base <- function(x) sub("(_jumlah|_mean)$", "", x)
  bases    <- unique(sapply(kandidat, get_base))
  terpilih <- c()
  for (b in bases) {
    anggota <- kandidat[get_base(kandidat) == b]
    if (length(anggota) == 1) { terpilih <- c(terpilih, anggota); next }
    cor_v   <- sapply(anggota, function(v)
      abs(cor(df[[v]], df[[y_col]], use = "complete.obs")))
    cor_v   <- cor_v[!is.na(cor_v)]
    if (length(cor_v) == 0) { terpilih <- c(terpilih, anggota[1]); next }
    terpilih <- c(terpilih, names(which.max(cor_v)))
  }
  unique(terpilih)
}

seleksi_backward <- function(df, y_col, excl_cols = NULL, r2_cap = 0.8) {
  if (is.null(excl_cols)) excl_cols <- names(df)[!startsWith(names(df), "X")]
  n_domain <- nrow(df)
  max_top  <- max(1L, floor(n_domain / 10L))

  keep <- sapply(df, function(x) length(unique(na.omit(x))) > 1)
  df   <- df[, keep]

  kandidat <- setdiff(names(df), excl_cols)
  kandidat <- kandidat[startsWith(kandidat, "X")]
  if (length(kandidat) == 0) return(character(0))

  # Pilih 1 representatif per grup X (sesuai y_col & data segmen ini)
  kandidat <- pilih_per_grup(df, kandidat, y_col)
  if (length(kandidat) == 0) return(character(0))

  cor_v <- sapply(df[kandidat], function(x)
    abs(cor(x, df[[y_col]], use = "complete.obs")))
  cor_v <- cor_v[!is.na(cor_v)]
  if (length(cor_v) == 0) return(character(0))
  vars  <- names(sort(cor_v, decreasing = TRUE))[1:min(max_top, length(cor_v))]
  vars  <- vars[!is.na(vars)]

  step_m <- try(stepAIC(
    lm(as.formula(paste(y_col, "~", paste(vars, collapse = "+"))), data = df),
    direction = "backward", trace = FALSE), silent = TRUE)
  if (!inherits(step_m, "try-error")) {
    sv <- names(coef(step_m))[-1]
    if (length(sv) > 0) vars <- sv
  }

  repeat {
    if (length(vars) <= 1) break
    m <- try(lm(as.formula(paste(y_col,"~",paste(vars,collapse="+"))),data=df),silent=TRUE)
    if (inherits(m,"try-error")) { vars <- vars[1]; break }
    v <- try(vif(m), silent=TRUE)
    if (inherits(v,"try-error")) break
    v_ok <- v[!is.na(v)]
    if (length(v_ok)==0 || all(v_ok<=10)) break
    vars <- vars[vars != names(which.max(v_ok))]
  }

  if (length(vars) > 1) {
    m <- lm(as.formula(paste(y_col,"~",paste(vars,collapse="+"))),data=df)
    if (summary(m)$r.squared > r2_cap) vars <- vars[1]
  }
  return(vars)
}

Seleksi A2: Top-n/10

seleksi_topn <- function(df, y_col, excl_cols = NULL, r2_cap = 0.8) {
  if (is.null(excl_cols)) excl_cols <- names(df)[!startsWith(names(df), "X")]
  n_domain <- nrow(df)
  max_top  <- min(max(1L, floor(n_domain / 10L)), 8L)

  keep <- sapply(df, function(x) length(unique(na.omit(x))) > 1)
  df   <- df[, keep]

  kandidat <- setdiff(names(df), excl_cols)
  kandidat <- kandidat[startsWith(kandidat, "X")]
  if (length(kandidat) == 0) return(character(0))

  # Pilih 1 representatif per grup X
  kandidat <- pilih_per_grup(df, kandidat, y_col)
  if (length(kandidat) == 0) return(character(0))

  cor_v <- sapply(df[kandidat], function(x)
    abs(cor(x, df[[y_col]], use = "complete.obs")))
  cor_v <- cor_v[!is.na(cor_v)]
  if (length(cor_v) == 0) return(character(0))
  vars  <- names(sort(cor_v, decreasing = TRUE))[1:min(max_top, length(cor_v))]
  vars  <- vars[!is.na(vars)]

  repeat {
    if (length(vars) <= 1) break
    m <- try(lm(as.formula(paste(y_col,"~",paste(vars,collapse="+"))),data=df),silent=TRUE)
    if (inherits(m,"try-error")) { vars <- vars[1]; break }
    v <- try(vif(m), silent=TRUE)
    if (inherits(v,"try-error")) break
    v_ok <- v[!is.na(v)]
    if (length(v_ok)==0 || all(v_ok<=10)) break
    vars <- vars[vars != names(which.max(v_ok))]
  }

  if (length(vars) > 1) {
    m <- lm(as.formula(paste(y_col,"~",paste(vars,collapse="+"))),data=df)
    if (summary(m)$r.squared > r2_cap) vars <- vars[1]
  }
  return(vars)
}

Model: EBLUP

run_eblup <- function(df, vars) {
  df$vardir <- pmax(df$vardir, 1e-10)

  # Trim ke kolom yang dibutuhkan mseFH saja (seperti pola SAE_Lengkap_Fixed2)
  # Kolom ekstra (grup_jenks, cluster_*, RSE_direct_col, dll) dikeluarkan
  # agar mseFH tidak terganggu
  df_m        <- df[, c("Estimasi", "vardir", vars), drop = FALSE]

  # Scale per kolom — lebih aman dari scale() bulk untuk kolom near-constant
  for (v in vars) {
    mu <- mean(df_m[[v]], na.rm = TRUE)
    sd <- sd(df_m[[v]],   na.rm = TRUE)
    df_m[[v]] <- if (is.na(sd) || sd == 0) 0 else (df_m[[v]] - mu) / sd
    df_m[[v]][is.na(df_m[[v]]) | is.nan(df_m[[v]])] <- 0
  }

  form <- as.formula(paste("Estimasi ~", paste(vars, collapse = "+")))
  m    <- try(mseFH(form, vardir = vardir, data = df_m), silent = TRUE)

  if (inherits(m, "try-error") || is.null(m$est) || is.null(m$mse)) {
    df$y_eblup <- df$Estimasi
    df$mse     <- df$vardir
  } else {
    ev  <- as.numeric(m$est$eblup)
    mv  <- as.numeric(m$mse)
    # Per-domain fallback: domain NaN/NA → pakai direct, bukan fallback seluruh segmen
    bad <- is.na(ev) | is.nan(ev) | is.na(mv) | is.nan(mv)
    if (any(bad)) {
      message("  EBLUP: ", sum(bad), " domain NaN → fallback direct per domain")
      ev[bad] <- df$Estimasi[bad]
      mv[bad] <- df$vardir[bad]
    }
    df$y_eblup <- ev
    df$mse     <- mv
  }

  df$mse        <- pmax(df$mse, 0)
  df$RSE_direct <- sqrt(df$vardir) / pmax(df$Estimasi, 1e-6) * 100
  df$RMSE_eblup <- sqrt(df$mse)
  df$RSE_eblup  <- df$RMSE_eblup / pmax(abs(df$y_eblup), 1e-6) * 100
  df
}

Model: GLMM (glmmTMB)

run_glmm <- function(df, vars) {
  eps       <- 1e-4
  df$y_prop <- pmax(pmin(df$Estimasi / 100, 1 - eps), eps)
  se_prop   <- pmax(df$RSE / 100 * df$y_prop, eps)

  # n_eff minimum 5 agar binomial tidak quasi-saturated
  df$n_eff   <- pmax(as.integer(round(df$y_prop * (1 - df$y_prop) / se_prop^2)), 5L)
  df$y_count <- pmin(as.integer(round(df$y_prop * df$n_eff)), df$n_eff - 1L)
  df$y_count <- pmax(df$y_count, 1L)   # hindari 0 dan n_eff (separasi)

  df_m        <- df[, c("Kako", "y_count", "n_eff", vars)]
  df_m[vars]  <- as.data.frame(scale(df_m[vars]))
  df_m[vars][is.nan(as.matrix(df_m[vars]))] <- 0
  df_m$Kako   <- as.factor(df_m$Kako)

  form <- as.formula(paste(
    "cbind(y_count, n_eff - y_count) ~",
    paste(vars, collapse = " + "),
    "+ (1 | Kako)"
  ))

  ctrl <- glmmTMBControl(optCtrl = list(iter.max = 500, eval.max = 800))
  m    <- try(glmmTMB(form, data = df_m, family = binomial, control = ctrl),
              silent = TRUE)

  if (inherits(m, "try-error") || is.null(m)) {
    message("  GLMM fit gagal → fallback direct")
    df$y_glmm   <- df$Estimasi
    df$mse_glmm <- df$vardir
  } else {
    # Prediksi: fixed + random effect (sesuai slide: X_i*beta + v_i_hat)
    df$y_glmm <- plogis(predict(m, type = "link", re.form = NULL)) * 100

    # ── Jackknife MSE (M2i saja) — M1i diabaikan karena g1i GLMM tidak
    #    memiliki bentuk analytik seperti FH, jadi full MSE ≈ M2i
    n_d   <- nrow(df)
    theta <- df$y_glmm   # estimasi penuh

    mse_v <- tryCatch({
      jack_pred <- matrix(NA_real_, nrow = n_d, ncol = n_d)

      for (i in seq_len(n_d)) {
        df_j <- df_m[-i, ]
        m_j  <- try(glmmTMB(form, data = df_j, family = binomial,
                             control = glmmTMBControl(
                               optCtrl = list(iter.max = 300, eval.max = 500))),
                    silent = TRUE)
        if (!inherits(m_j, "try-error")) {
          pj <- try(plogis(predict(m_j, newdata = df_m, type = "link",
                                    re.form = NA,
                                    allow.new.levels = TRUE)) * 100,
                    silent = TRUE)
          if (!inherits(pj, "try-error") && length(pj) == n_d)
            jack_pred[i, ] <- pj
        }
      }

      # M2i = (m-1)/m * sum(theta_i,-l - theta_i)^2
      vapply(seq_len(n_d), function(j) {
        ev <- jack_pred[, j][!is.na(jack_pred[, j])]
        if (length(ev) >= 2) {
          ((length(ev) - 1) / length(ev)) * mean((ev - theta[j])^2)
        } else {
          (df$RSE[j] / 100 * theta[j])^2
        }
      }, numeric(1))

    }, error = function(e) {
      message("  Jackknife crash: ", e$message, " → fallback MSE empiris")
      (df$RSE / 100 * df$y_glmm)^2
    })

    df$mse_glmm <- pmax(mse_v, 0)
  }

  df$RSE_direct <- df$RSE
  df$RMSE_glmm  <- sqrt(df$mse_glmm)
  df$RSE_glmm   <- df$RMSE_glmm / pmax(df$y_glmm, 1e-6) * 100
  df
}

Model: EB Beta-Binomial

#' EB Beta-Binomial dengan covariate:
#' (1) Regresi logit(p) ~ vars → mu_i (domain-specific prior mean)
#' (2) Estimasi phi (precision) via MOM dari {p_i}
#' (3) EB: p_hat_i = (a_i + y_i) / (a_i + b_i + n_eff_i) x 100
#' (4) Var posterior analytik → RSE_eb
run_eb_beta <- function(df, vars) {
  eps       <- 1e-4
  df$y_prop <- pmax(pmin(df$Estimasi / 100, 1 - eps), eps)

  se_prop    <- pmax(df$RSE / 100 * df$y_prop, eps)
  df$n_eff   <- pmax(as.integer(round(df$y_prop * (1 - df$y_prop) / se_prop^2)), 2L)
  df$y_count <- pmin(as.integer(round(df$y_prop * df$n_eff)), df$n_eff)

  df$y_logit_eb <- log(df$y_prop / (1 - df$y_prop))

  df[vars] <- as.data.frame(scale(df[vars]))
  df[vars][is.nan(as.matrix(df[vars]))] <- 0

  # Regresi untuk mu_i (prior mean per domain)
  form_reg <- as.formula(paste("y_logit_eb ~", paste(vars, collapse = "+")))
  reg      <- try(lm(form_reg, data = df), silent = TRUE)
  mu_i     <- if (inherits(reg, "try-error")) {
    df$y_prop
  } else {
    pmax(pmin(plogis(fitted(reg)), 1 - eps), eps)
  }

  # MOM untuk phi (precision)
  p_bar  <- mean(df$y_prop)
  var_p  <- var(df$y_prop)
  phi    <- max((p_bar * (1 - p_bar) / var_p) - 1, 0.01)

  a_i <- mu_i * phi
  b_i <- (1 - mu_i) * phi
  n_i <- df$n_eff
  y_i <- df$y_count

  # EB estimator
  a_post   <- a_i + y_i
  b_post   <- b_i + (n_i - y_i)
  denom    <- a_i + b_i + n_i
  p_hat_eb <- a_post / denom

  df$y_eb_pct <- p_hat_eb * 100

  # Var posterior analytik (Beta conjugate)
  var_post      <- (a_post * b_post) / (denom^2 * (denom + 1))
  df$var_eb_pct <- var_post * 100^2

  df$RSE_direct <- df$RSE
  df$RMSE_eb    <- sqrt(df$var_eb_pct)
  df$RSE_eb     <- df$RMSE_eb / pmax(df$y_eb_pct, 1e-6) * 100
  df
}

Model: HB Beta

# ── Helper: identifikasi kovariat yang CI-nya menyeberang nol ────────────────
# "Tidak aman" := 2.5% < 0 DAN 97.5% > 0  (intercept selalu dikecualikan)
#
# Desain: akses POSISIONAL, bukan berbasis nama kolom/baris.
# saeHB bisa menyimpan rownames sebagai "beta[1]","beta[2]"... (notasi JAGS)
# meski di-print tampak seperti nama variabel — intersect() gagal dalam kasus itu.
#
# Struktur baku saeHB::Beta()$coefficient:
#   Baris 1     = intercept  (di-skip)
#   Baris 2..k+1 = kovariat urutan sesuai formula = urutan var_names
#   Kolom 1=Mean | 2=SD | 3=2.5% | 4=25% | 5=50% | 6=75% | 7=97.5%
#
.vars_cross_ci <- function(coef_mat, var_names) {
  if (is.null(coef_mat) || nrow(coef_mat) < 2L || ncol(coef_mat) < 7L)
    return(character(0))

  # Baris kovariat: lewati baris-1 (intercept), petakan ke var_names
  p    <- min(length(var_names), nrow(coef_mat) - 1L)
  sub  <- coef_mat[1L + seq_len(p), , drop = FALSE]

  # Kolom 3 = 2.5%, kolom 7 = 97.5% — paksa numerik agar aman
  ci_lo <- as.numeric(sub[, 3L])
  ci_hi <- as.numeric(sub[, 7L])

  cross <- which(ci_lo < 0 & ci_hi > 0)
  if (length(cross) == 0L) return(character(0))

  var_names[cross]   # mapping posisional kembali ke nama variabel asli
}

# ── Fungsi utama HB Beta dengan seleksi CI otomatis ─────────────────────────
#
# Algoritma:
#  1. Skala semua vars sekali di awal (per kolom, tahan near-constant).
#  2. Jalankan saeHB::Beta() — output internalnya di-suppress agar tidak duplikat.
#  3. Cetak tabel koefisien kita sendiri (bersih, per iterasi).
#  4. Cek 2.5% & 97.5%: jika ada yang menyeberang nol → hapus SD terbesar.
#  5. Ulangi (2–4) sampai semua CI aman atau tidak ada vars tersisa.
#  6. Pakai hasil run terakhir yang valid untuk output domain.
#
# Catatan penting:
#  - saeHB::Beta() di-wrap capture.output() agar tidak mencetak tabel sendiri
#    (yang menyebabkan output duplikat). Kita cetak sendiri versi yang lebih bersih.
#  - Semua status memakai cat() bukan message() supaya tampil di stdout
#    (ikut copy-paste, tidak tenggelam di stderr/merah RStudio).
#
run_hbbeta <- function(df, vars,
                       has_jags    = get("has_jags", envir = .GlobalEnv),
                       iter.mcmc   = 50000,
                       burn.in     = 2000,
                       thin        = 10,
                       iter.update = 5) {

  # ── Fallback jika JAGS tidak tersedia ──────────────────────────────────────
  if (!has_jags) {
    df$y_hb_pct <- df$Estimasi
    df$sd_hb    <- NA_real_
    df$RSE_hb   <- df$RSE
    return(df)
  }

  # ── Persiapan data ──────────────────────────────────────────────────────────
  eps       <- 1e-4
  df$y_prop <- pmax(pmin(df$Estimasi / 100, 1 - eps), eps)

  # Scale per kolom — lebih aman dari scale() bulk untuk kolom near-constant
  for (v in vars) {
    mu_v <- mean(df[[v]], na.rm = TRUE)
    sd_v <- sd(df[[v]],   na.rm = TRUE)
    df[[v]] <- if (is.na(sd_v) || sd_v == 0) 0 else (df[[v]] - mu_v) / sd_v
    df[[v]][is.na(df[[v]]) | is.nan(df[[v]])] <- 0
  }

  # ── Loop seleksi berbasis CI ────────────────────────────────────────────────
  current_vars <- vars
  hb_last      <- NULL
  max_iter     <- length(vars) + 1L   # batas aman: maks 1 drop per iterasi

  for (iter in seq_len(max_iter)) {

    # Tidak ada vars → fallback langsung
    if (length(current_vars) == 0L) {
      cat("  [HB] Tidak ada variabel tersisa setelah seleksi CI → fallback direct\n")
      df$y_hb_pct <- df$Estimasi
      df$sd_hb    <- NA_real_
      df$RSE_hb   <- df$RSE
      return(df)
    }

    form_hb <- as.formula(paste("y_prop ~", paste(current_vars, collapse = "+")))

    # ── saeHB::Beta() di-wrap capture.output() agar tidak duplikat ─────────
    # Output internal saeHB (cat/print) ditangkap & dibuang;
    # kita cetak sendiri tabel koefisien di bawah.
    capture.output(
      hb_cur <- try(
        saeHB::Beta(
          formula     = form_hb,
          data        = df,
          iter.update = iter.update,
          iter.mcmc   = iter.mcmc,
          thin        = thin,
          burn.in     = burn.in
        ),
        silent = TRUE
      )
    )

    # JAGS crash / konvergensi gagal → fallback
    if (inherits(hb_cur, "try-error") || is.null(hb_cur$Est)) {
      cat("  [HB] Iterasi", iter, "gagal (JAGS error) → fallback direct\n")
      df$y_hb_pct <- df$Estimasi
      df$sd_hb    <- NA_real_
      df$RSE_hb   <- df$RSE
      return(df)
    }

    hb_last  <- hb_cur
    coef_mat <- hb_cur$coefficient

    # saeHB tidak mengembalikan tabel koefisien → lewati cek CI
    if (is.null(coef_mat)) {
      cat("  [HB] Tabel koefisien tidak tersedia → lewati cek CI\n")
      break
    }

    # ── Cetak tabel koefisien kita sendiri (bersih, berlabel iterasi) ───────
    cat(sprintf("\n  [HB Iter %d] Vars aktif (%d): %s\n",
                iter, length(current_vars),
                paste(current_vars, collapse = ", ")))
    print(round(coef_mat, 5))
    cat("\n")

    # ── Cek CI ───────────────────────────────────────────────────────────────
    cross_vars <- .vars_cross_ci(coef_mat, current_vars)

    if (length(cross_vars) == 0L) {
      # ✓ Semua aman
      cat(sprintf("  [HB] ✓ Semua CI aman — selesai pada iterasi %d.\n", iter))
      break
    }

    # ✗ Ada yang menyeberang nol → keluarkan yang SD-nya terbesar
    # SD lookup juga posisional (kolom 2 = SD, baris = 1 + posisi di current_vars)
    pos_cross <- match(cross_vars, current_vars)          # posisi di current_vars
    sd_cross  <- setNames(
      as.numeric(coef_mat[1L + pos_cross, 2L]),
      cross_vars
    )
    to_drop   <- names(which.max(sd_cross))

    cat(sprintf("  [HB] ✗ Iter %d — CI menyeberang nol: [%s]\n",
                iter, paste(cross_vars, collapse = ", ")))
    cat(sprintf("  [HB]   → Keluarkan '%s'  (SD = %.5f, terbesar)\n",
                to_drop, sd_cross[[to_drop]]))

    current_vars <- setdiff(current_vars, to_drop)
    # lanjut ke iterasi berikutnya dengan current_vars − 1
  }

  # ── Tulis hasil ke df ───────────────────────────────────────────────────────
  if (is.null(hb_last) || is.null(hb_last$Est)) {
    cat("  [HB] Tidak ada run valid → fallback direct\n")
    df$y_hb_pct <- df$Estimasi
    df$sd_hb    <- NA_real_
    df$RSE_hb   <- df$RSE
  } else {
    cat("  [HB] ✓ Variabel final:", paste(current_vars, collapse = ", "), "\n")
    df$y_hb_pct <- hb_last$Est$MEAN * 100
    df$sd_hb    <- hb_last$Est$SD
    df$RSE_hb   <- df$sd_hb / pmax(df$y_hb_pct / 100, 1e-6) * 100
  }

  df
}

Fungsi Plot & Evaluasi

# ── Plot RSE line (2 metode) ─────────────────────────────────────────────
plot_rse <- function(data, col1, col2, lab1, lab2, title) {
  miss <- setdiff(c(col1, col2), names(data))
  if (length(miss) > 0) { message("Kolom tidak ada: ", paste(miss)); return(invisible(NULL)) }
  df_plt <- data %>%
    dplyr::select(Kako, all_of(c(col1, col2))) %>%
    pivot_longer(-Kako, names_to = "Metode", values_to = "RSE") %>%
    mutate(Metode = case_when(Metode == col1 ~ lab1, Metode == col2 ~ lab2, TRUE ~ Metode),
           Kako = as.character(Kako)) %>%
    filter(!is.na(RSE))
  ggplot(df_plt, aes(x = Kako, y = RSE, group = Metode, color = Metode)) +
    geom_line(linewidth = 0.8, alpha = 0.85) +
    geom_point(size = 1.6) +
    geom_hline(yintercept = 25, linetype = "dashed", color = "#c0392b", linewidth = 0.9) +
    annotate("text", x = 1, y = 26.5, label = "Batas 25%", color = "#c0392b",
             hjust = 0, size = 3) +
    scale_color_manual(values = c("#2980b9", "#27ae60")) +
    labs(title = title, x = "Kabupaten/Kota", y = "RSE (%)", color = NULL) +
    theme_minimal(base_size = 11) +
    theme(axis.text.x = element_text(angle = 90, vjust = 0.5, size = 6),
          legend.position = "top", plot.title = element_text(face = "bold", size = 12))
}

# ── Plot HB Beta Posterior (dot + CI per domain) ─────────────────────────
plot_hb_posterior <- function(df, title, group_col = NULL) {
  eps   <- 1e-4
  df_p  <- df %>%
    filter(!is.na(y_hb_pct) & !is.na(sd_hb)) %>%
    mutate(
      ci_lo  = pmax((y_hb_pct / 100 - 1.96 * sd_hb) * 100, 0),
      ci_hi  = pmin((y_hb_pct / 100 + 1.96 * sd_hb) * 100, 100),
      Domain = reorder(as.character(Kako), y_hb_pct)
    )
  if (!is.null(group_col) && group_col %in% names(df_p)) {
    df_p$Grup <- df_p[[group_col]]
  } else {
    df_p$Grup <- "Semua Domain"
  }

  p <- ggplot(df_p, aes(x = Domain)) +
    geom_errorbar(aes(ymin = ci_lo, ymax = ci_hi, color = Grup),
                  width = 0.3, alpha = 0.55) +
    geom_point(aes(y = y_hb_pct, color = Grup), size = 2) +
    geom_point(aes(y = Estimasi), color = "#c0392b", size = 1.2, alpha = 0.6, shape = 4) +
    geom_hline(yintercept = mean(df_p$y_hb_pct, na.rm = TRUE),
               linetype = "dashed", color = "#2ecc71", linewidth = 0.8) +
    scale_color_manual(values = c("#2980b9","#e67e22","#8e44ad","#16a085")) +
    labs(title    = title,
         subtitle = "Titik biru = HB | Error bar = 95% CI | Silang merah = Direct | Garis hijau = Rata-rata HB",
         x = "Kabupaten/Kota (urut HB)", y = "Estimasi (%)", color = "Grup") +
    theme_minimal(base_size = 10) +
    theme(axis.text.x  = element_text(angle = 90, vjust = 0.5, size = 5),
          legend.position = "top",
          plot.title      = element_text(face = "bold", size = 12),
          plot.subtitle   = element_text(size = 9))
  p
}

# ── Utilitas evaluasi ────────────────────────────────────────────────────
pct_ok     <- function(x)     round(mean(x < 25, na.rm = TRUE) * 100, 1)
pct_ok_15  <- function(x)     round(mean(x < 15, na.rm = TRUE) * 100, 1)
cv_mean    <- function(x)     round(mean(x, na.rm = TRUE), 2)

tabel_rse <- function(data, var_rse, label) {
  data.frame(
    Skenario      = label,
    `RSE >= 25`   = sum(data[[var_rse]] >= 25, na.rm = TRUE),
    `RSE < 25`    = sum(data[[var_rse]] < 25,  na.rm = TRUE),
    `% < 25%`     = pct_ok(data[[var_rse]]),
    `% < 15%`     = pct_ok_15(data[[var_rse]]),
    `CV Mean`     = cv_mean(data[[var_rse]]),
    check.names   = FALSE
  )
}

metrik <- function(est_model, est_direct, label) {
  data.frame(
    Skenario  = label,
    `RB (%)`  = round(mean((est_model - est_direct) / est_direct, na.rm=TRUE)*100, 3),
    `RMSE`    = round(sqrt(mean((est_model - est_direct)^2, na.rm=TRUE)), 4),
    check.names = FALSE
  )
}

# ── Fungsi utama: jalankan model pada list segmen ────────────────────────
# aux_fn  : seleksi_backward atau seleksi_topn
# model_fn: run_eblup / run_glmm / run_eb_beta / run_hbbeta
# y_col   : "Estimasi" (EBLUP) atau "y_logit" (GLMM/EB/HB)
# Catatan: excl_cols tidak perlu dioper — kedua fungsi seleksi
#          sudah auto-detect kolom non-X secara dinamis
run_on_segments <- function(seg_list, aux_fn, model_fn, y_col,
                             min_n = 4, ...) {
  hasil <- list()
  for (nm in names(seg_list)) {
    df_s <- seg_list[[nm]]
    if (nrow(df_s) < min_n) { message("  Skip ", nm, " (n=", nrow(df_s), ")"); next }
    vars <- tryCatch(
      aux_fn(df_s, y_col = y_col),
      error = function(e) { message("  VarSel error [", nm, "]: ", e$message); character(0) }
    )
    if (length(vars) == 0) {
      message("  Tidak ada var terpilih untuk ", nm, " — skip")
      next
    }
    cat("  [", nm, "]", y_col, "| n =", nrow(df_s),
        "| Vars:", paste(vars, collapse=", "), "\n")
    res <- tryCatch(
      model_fn(df_s, vars, ...),
      error = function(e) {
        message("  Model error [", nm, "]: ", e$message)
        NULL
      }
    )
    if (!is.null(res)) hasil[[nm]] <- res
  }
  if (length(hasil) == 0) return(NULL)
  bind_rows(hasil)
}

4. Pembagian Data

C2 — RSE Natural Break (Jenks)

# RSE_direct_col: hanya untuk pembagian partisi, BUKAN kandidat aux
# Karena nama tidak berawalan "X", otomatis tereksklusi oleh kedua fungsi seleksi
df_base$RSE_direct_col <- sqrt(df_base$vardir) / pmax(df_base$Estimasi, 1e-6) * 100

brk_jenks <- classIntervals(df_base$RSE_direct_col, n = 2, style = "jenks")
df_base$grup_jenks <- cut(df_base$RSE_direct_col,
                          breaks = brk_jenks$brks,
                          labels = c("G1_RSE_Rendah", "G2_RSE_Tinggi"),
                          include.lowest = TRUE)

cat("Cut-off Jenks:", round(brk_jenks$brks[2], 2), "%\n")
## Cut-off Jenks: 53.58 %
table(df_base$grup_jenks)
## 
## G1_RSE_Rendah G2_RSE_Tinggi 
##            62            19

C3 — RSE Equal Size (Median)

med_rse <- median(df_base$RSE_direct_col, na.rm = TRUE)
df_base$grup_equal <- ifelse(df_base$RSE_direct_col <= med_rse,
                              "G1_RSE_Bawah", "G2_RSE_Atas")
cat("Median RSE:", round(med_rse, 2), "%\n")
## Median RSE: 44.36 %
table(df_base$grup_equal)
## 
## G1_RSE_Bawah  G2_RSE_Atas 
##           41           40

C4 — Cluster-Aux (k=2)

# Fungsi helper cluster
make_cluster <- function(df_full, vars_cl, seed = 42) {
  mat <- scale(df_full[, vars_cl, drop = FALSE])
  mat[is.nan(mat)] <- 0
  set.seed(seed)
  km  <- kmeans(mat, centers = 2, nstart = 50, iter.max = 200)
  paste0("Cluster_", km$cluster)
}

# === Global var selection (ALL data) untuk menentukan vars clustering ===

# A1 (Backward) — Normal link
vars_gbk_normal <- seleksi_backward(df_base, y_col = "Estimasi")
cat("Cluster-A1-Normal vars:", paste(vars_gbk_normal, collapse=", "), "\n")
## Cluster-A1-Normal vars: X45, X28
df_base$cluster_bk_normal <- make_cluster(df_base, vars_gbk_normal)

# A2 (TopN) — Normal link
vars_gtn_normal <- seleksi_topn(df_base, y_col = "Estimasi")
cat("Cluster-A2-Normal vars:", paste(vars_gtn_normal, collapse=", "), "\n")
## Cluster-A2-Normal vars: X45, X8, X36_mean, X28, X29_mean, X30_mean, X31_mean
df_base$cluster_tn_normal <- make_cluster(df_base, vars_gtn_normal)

# A1 (Backward) — Logit link
vars_gbk_logit <- seleksi_backward(df_base, y_col = "y_logit")
cat("Cluster-A1-Logit vars:", paste(vars_gbk_logit, collapse=", "), "\n")
## Cluster-A1-Logit vars: X8, X45, X44
df_base$cluster_bk_logit <- make_cluster(df_base, vars_gbk_logit)

# A2 (TopN) — Logit link
vars_gtn_logit <- seleksi_topn(df_base, y_col = "y_logit")
cat("Cluster-A2-Logit vars:", paste(vars_gtn_logit, collapse=", "), "\n")
## Cluster-A2-Logit vars: X8, X45, X44, X39, X36_mean, X30_mean, X28, X1
df_base$cluster_tn_logit <- make_cluster(df_base, vars_gtn_logit)

# Ringkasan cluster
kable(
  data.frame(
    Cluster_Tipe    = c("A1-Normal","A2-Normal","A1-Logit","A2-Logit"),
    Variabel_Global = c(paste(vars_gbk_normal, collapse=", "),
                        paste(vars_gtn_normal, collapse=", "),
                        paste(vars_gbk_logit,  collapse=", "),
                        paste(vars_gtn_logit,  collapse=", "))
  ), caption = "Variabel Global untuk Pembentukan Cluster") %>%
  kable_styling(bootstrap_options = c("striped","hover","condensed"))
Variabel Global untuk Pembentukan Cluster
Cluster_Tipe Variabel_Global
A1-Normal X45, X28
A2-Normal X45, X8, X36_mean, X28, X29_mean, X30_mean, X31_mean
A1-Logit X8, X45, X44
A2-Logit X8, X45, X44, X39, X36_mean, X30_mean, X28, X1

Distribusi Semua Partisi

p1 <- ggplot(df_base, aes(x = RSE_direct_col, fill = grup_jenks)) +
  geom_histogram(bins = 25, color = "white", alpha = 0.85) +
  geom_vline(xintercept = brk_jenks$brks[2], linetype="dashed", color="#c0392b") +
  scale_fill_manual(values = c("#2980b9","#e67e22")) +
  labs(title = "C2: RSE Natural Break (Jenks)", x = "RSE Direct (%)", y = "n", fill=NULL) +
  theme_minimal(base_size = 11) + theme(legend.position = "top")

p2 <- ggplot(df_base, aes(x = RSE_direct_col, fill = grup_equal)) +
  geom_histogram(bins = 25, color = "white", alpha = 0.85) +
  geom_vline(xintercept = med_rse, linetype="dashed", color="#c0392b") +
  scale_fill_manual(values = c("#2980b9","#e67e22")) +
  labs(title = "C3: RSE Equal Size (Median)", x = "RSE Direct (%)", y = "n", fill=NULL) +
  theme_minimal(base_size = 11) + theme(legend.position = "top")

p3 <- ggplot(df_base, aes(x = Estimasi, fill = cluster_bk_normal)) +
  geom_boxplot(alpha = 0.8) +
  scale_fill_manual(values = c("#2980b9","#27ae60")) +
  labs(title = "C4 Cluster (A1-Normal)", x = "Estimasi (%)", fill=NULL) +
  theme_minimal(base_size = 11) + theme(legend.position = "top")

p4 <- ggplot(df_base, aes(x = Estimasi, fill = cluster_bk_logit)) +
  geom_boxplot(alpha = 0.8) +
  scale_fill_manual(values = c("#2980b9","#27ae60")) +
  labs(title = "C4 Cluster (A1-Logit)", x = "Estimasi (%)", fill=NULL) +
  theme_minimal(base_size = 11) + theme(legend.position = "top")

(p1 | p2) / (p3 | p4)


7. EB Beta-Binomial Empirical Bayes

Skenario 17–24 — EB Beta-Binomial. Regresi logit(p) ~ vars menghasilkan μᵢ (prior mean domain-spesifik). Presisi φ diestimasi via Method of Moments. Estimasi EB: p̂ᵢ = (aᵢ + yᵢ) / (aᵢ + bᵢ + nᵢ). MSE dari variansi posterior Beta analytik.

S17 — Backward · All

cat("=== Skenario 17: EB Backward All ===\n")
## === Skenario 17: EB Backward All ===
df_s17 <- run_on_segments(
  seg_list = list("All" = df_base),
  aux_fn   = seleksi_backward, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ All ] y_logit | n = 81 | Vars: X8, X45, X44
summary(df_s17[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct        RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.134   Min.   : 22.9   Min.   :21.0  
##  1st Qu.: 6.18   1st Qu.: 6.668   1st Qu.: 38.3   1st Qu.:31.5  
##  Median : 9.32   Median : 9.905   Median : 44.4   Median :35.3  
##  Mean   :10.08   Mean   : 9.410   Mean   : 47.6   Mean   :37.7  
##  3rd Qu.:13.93   3rd Qu.:12.489   3rd Qu.: 53.5   3rd Qu.:40.7  
##  Max.   :24.05   Max.   :19.161   Max.   :101.7   Max.   :83.7
plot_rse(df_s17,"RSE_direct","RSE_eb","Direct","EB-BK All","S17: EB Beta-Binomial Backward — All")
S17: EB Beta Backward All

S17: EB Beta Backward All

S18 — Backward · RSE-NB

cat("=== Skenario 18: EB Backward RSE-NB ===\n")
## === Skenario 18: EB Backward RSE-NB ===
df_s18 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_jenks),
  aux_fn   = seleksi_backward, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ G1_RSE_Rendah ] y_logit | n = 62 | Vars: X8, X29_mean 
##   [ G2_RSE_Tinggi ] y_logit | n = 19 | Vars: X8
summary(df_s18[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct        RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.106   Min.   : 22.9   Min.   :20.1  
##  1st Qu.: 6.18   1st Qu.: 6.688   1st Qu.: 38.3   1st Qu.:28.7  
##  Median : 9.32   Median : 9.823   Median : 44.4   Median :31.6  
##  Mean   :10.08   Mean   : 9.486   Mean   : 47.6   Mean   :36.3  
##  3rd Qu.:13.93   3rd Qu.:12.608   3rd Qu.: 53.5   3rd Qu.:40.7  
##  Max.   :24.05   Max.   :18.708   Max.   :101.7   Max.   :87.1
plot_rse(df_s18,"RSE_direct","RSE_eb","Direct","EB-BK RSE-NB","S18: EB Beta-Binomial Backward — RSE NB")
S18: EB Beta Backward RSE Natural Break

S18: EB Beta Backward RSE Natural Break

S19 — Backward · RSE-ES

cat("=== Skenario 19: EB Backward RSE-ES ===\n")
## === Skenario 19: EB Backward RSE-ES ===
df_s19 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_equal),
  aux_fn   = seleksi_backward, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ G1_RSE_Bawah ] y_logit | n = 41 | Vars: X19, X29_jumlah 
##   [ G2_RSE_Atas ] y_logit | n = 40 | Vars: X45
summary(df_s19[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct        RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.183   Min.   : 22.9   Min.   :20.1  
##  1st Qu.: 6.18   1st Qu.: 6.204   1st Qu.: 38.3   1st Qu.:27.5  
##  Median : 9.32   Median : 8.313   Median : 44.4   Median :33.4  
##  Mean   :10.08   Mean   : 9.469   Mean   : 47.6   Mean   :35.4  
##  3rd Qu.:13.93   3rd Qu.:13.217   3rd Qu.: 53.5   3rd Qu.:39.9  
##  Max.   :24.05   Max.   :19.118   Max.   :101.7   Max.   :77.3
plot_rse(df_s19,"RSE_direct","RSE_eb","Direct","EB-BK RSE-ES","S19: EB Beta-Binomial Backward — RSE ES")
S19: EB Beta Backward RSE Equal Size

S19: EB Beta Backward RSE Equal Size

S20 — Backward · Cluster

cat("=== Skenario 20: EB Backward Cluster ===\n")
## === Skenario 20: EB Backward Cluster ===
df_s20 <- run_on_segments(
  seg_list = split(df_base, df_base$cluster_bk_logit),
  aux_fn   = seleksi_backward, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ Cluster_1 ] y_logit | n = 10 | Vars: X30 
##   [ Cluster_2 ] y_logit | n = 71 | Vars: X45_mean, X25_jumlah, X33_mean
summary(df_s20[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct         RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.0873   Min.   : 22.9   Min.   :21.4  
##  1st Qu.: 6.18   1st Qu.: 6.5408   1st Qu.: 38.3   1st Qu.:30.4  
##  Median : 9.32   Median : 9.7703   Median : 44.4   Median :33.9  
##  Mean   :10.08   Mean   : 9.4931   Mean   : 47.6   Mean   :36.4  
##  3rd Qu.:13.93   3rd Qu.:12.3782   3rd Qu.: 53.5   3rd Qu.:38.0  
##  Max.   :24.05   Max.   :17.7431   Max.   :101.7   Max.   :95.8
plot_rse(df_s20,"RSE_direct","RSE_eb","Direct","EB-BK Cluster","S20: EB Beta-Binomial Backward — Cluster")
S20: EB Beta Backward Cluster-Aux

S20: EB Beta Backward Cluster-Aux

S21 — Top-n/10 · All

cat("=== Skenario 21: EB TopN All ===\n")
## === Skenario 21: EB TopN All ===
df_s21 <- run_on_segments(
  seg_list = list("All" = df_base),
  aux_fn   = seleksi_topn, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ All ] y_logit | n = 81 | Vars: X8, X45, X44, X39, X36_mean, X30_mean, X28, X1
summary(df_s21[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct        RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.122   Min.   : 22.9   Min.   :21.2  
##  1st Qu.: 6.18   1st Qu.: 6.516   1st Qu.: 38.3   1st Qu.:31.4  
##  Median : 9.32   Median : 9.938   Median : 44.4   Median :35.2  
##  Mean   :10.08   Mean   : 9.458   Mean   : 47.6   Mean   :37.7  
##  3rd Qu.:13.93   3rd Qu.:12.728   3rd Qu.: 53.5   3rd Qu.:41.1  
##  Max.   :24.05   Max.   :18.843   Max.   :101.7   Max.   :82.7
plot_rse(df_s21,"RSE_direct","RSE_eb","Direct","EB-TN All","S21: EB Beta-Binomial Top-n/10 — All")
S21: EB Beta Top-n/10 All

S21: EB Beta Top-n/10 All

S22 — Top-n/10 · RSE-NB

cat("=== Skenario 22: EB TopN RSE-NB ===\n")
## === Skenario 22: EB TopN RSE-NB ===
df_s22 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_jenks),
  aux_fn   = seleksi_topn, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ G1_RSE_Rendah ] y_logit | n = 62 | Vars: X8, X36_mean, X29_mean, X31_mean, X26 
##   [ G2_RSE_Tinggi ] y_logit | n = 19 | Vars: X8
summary(df_s22[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct        RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.106   Min.   : 22.9   Min.   :20.2  
##  1st Qu.: 6.18   1st Qu.: 6.688   1st Qu.: 38.3   1st Qu.:28.7  
##  Median : 9.32   Median : 9.829   Median : 44.4   Median :31.5  
##  Mean   :10.08   Mean   : 9.488   Mean   : 47.6   Mean   :36.3  
##  3rd Qu.:13.93   3rd Qu.:12.589   3rd Qu.: 53.5   3rd Qu.:41.2  
##  Max.   :24.05   Max.   :18.584   Max.   :101.7   Max.   :87.1
plot_rse(df_s22,"RSE_direct","RSE_eb","Direct","EB-TN RSE-NB","S22: EB Beta-Binomial Top-n/10 — RSE NB")
S22: EB Beta Top-n/10 RSE Natural Break

S22: EB Beta Top-n/10 RSE Natural Break

S23 — Top-n/10 · RSE-ES

cat("=== Skenario 23: EB TopN RSE-ES ===\n")
## === Skenario 23: EB TopN RSE-ES ===
df_s23 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_equal),
  aux_fn   = seleksi_topn, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ G1_RSE_Bawah ] y_logit | n = 41 | Vars: X19, X29_jumlah, X10_jumlah, X8 
##   [ G2_RSE_Atas ] y_logit | n = 40 | Vars: X45, X8, X1, X40_jumlah
summary(df_s23[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct        RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.159   Min.   : 22.9   Min.   :19.9  
##  1st Qu.: 6.18   1st Qu.: 6.607   1st Qu.: 38.3   1st Qu.:27.5  
##  Median : 9.32   Median : 8.383   Median : 44.4   Median :32.7  
##  Mean   :10.08   Mean   : 9.541   Mean   : 47.6   Mean   :35.3  
##  3rd Qu.:13.93   3rd Qu.:13.269   3rd Qu.: 53.5   3rd Qu.:40.5  
##  Max.   :24.05   Max.   :19.361   Max.   :101.7   Max.   :76.9
plot_rse(df_s23,"RSE_direct","RSE_eb","Direct","EB-TN RSE-ES","S23: EB Beta-Binomial Top-n/10 — RSE ES")
S23: EB Beta Top-n/10 RSE Equal Size

S23: EB Beta Top-n/10 RSE Equal Size

S24 — Top-n/10 · Cluster

cat("=== Skenario 24: EB TopN Cluster ===\n")
## === Skenario 24: EB TopN Cluster ===
df_s24 <- run_on_segments(
  seg_list = split(df_base, df_base$cluster_tn_logit),
  aux_fn   = seleksi_topn, model_fn = run_eb_beta, y_col = "y_logit"
)
##   [ Cluster_1 ] y_logit | n = 67 | Vars: X45, X25_jumlah, X11_mean, X26_mean, X43_mean, X10_jumlah 
##   [ Cluster_2 ] y_logit | n = 14 | Vars: X30
summary(df_s24[, c("Estimasi","y_eb_pct","RSE_direct","RSE_eb")])
##     Estimasi        y_eb_pct         RSE_direct        RSE_eb    
##  Min.   : 0.08   Min.   : 0.0893   Min.   : 22.9   Min.   :20.8  
##  1st Qu.: 6.18   1st Qu.: 5.9527   1st Qu.: 38.3   1st Qu.:30.4  
##  Median : 9.32   Median : 9.6409   Median : 44.4   Median :33.6  
##  Mean   :10.08   Mean   : 9.4755   Mean   : 47.6   Mean   :36.4  
##  3rd Qu.:13.93   3rd Qu.:12.0506   3rd Qu.: 53.5   3rd Qu.:38.4  
##  Max.   :24.05   Max.   :18.3517   Max.   :101.7   Max.   :95.1
plot_rse(df_s24,"RSE_direct","RSE_eb","Direct","EB-TN Cluster","S24: EB Beta-Binomial Top-n/10 — Cluster")
S24: EB Beta Top-n/10 Cluster-Aux

S24: EB Beta Top-n/10 Cluster-Aux


8. HB Beta-Binomial saeHB

Prasyarat JAGS: Skenario 25–32 memerlukan JAGS terinstal di OS dan paket saeHB. Download: https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/ lalu restart R. Jika JAGS tidak tersedia, otomatis fallback ke direct estimator. Setiap skenario HB menyertakan plot posterior dengan credible interval 95%.

S25 — Backward · All

cat("=== Skenario 25: HB Backward All ===\n")
## === Skenario 25: HB Backward All ===
df_s25 <- run_on_segments(
  seg_list = list("All" = df_base),
  aux_fn   = seleksi_backward, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ All ] y_logit | n = 81 | Vars: X8, X45, X44

## 
##   [HB Iter 1] Vars aktif (3): X8, X45, X44
##              Mean      SD     2.5%     25%     50%     75%   97.5%
## intercept -2.3115 0.03053 -2.37134 -2.3316 -2.3116 -2.2905 -2.2532
## X8         0.3364 0.05335  0.23181  0.3017  0.3356  0.3721  0.4406
## X45       -0.2698 0.04741 -0.36653 -0.3012 -0.2693 -0.2378 -0.1783
## X44        0.1476 0.05178  0.04371  0.1130  0.1473  0.1827  0.2472
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X8, X45, X44
summary(df_s25[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct          RSE            RSE_hb    
##  Min.   : 0.08   Min.   : 2.02   Min.   : 22.9   Min.   :19.7  
##  1st Qu.: 6.18   1st Qu.: 7.55   1st Qu.: 38.3   1st Qu.:22.4  
##  Median : 9.32   Median :10.10   Median : 44.4   Median :24.4  
##  Mean   :10.08   Mean   :10.13   Mean   : 47.6   Mean   :25.7  
##  3rd Qu.:13.93   3rd Qu.:12.68   3rd Qu.: 53.5   3rd Qu.:27.0  
##  Max.   :24.05   Max.   :18.42   Max.   :101.7   Max.   :40.5
plot_rse(df_s25,"RSE","RSE_hb","Direct","HB-BK All","S25: HB Beta Backward — All Domain")
S25: HB Beta Backward RSE

S25: HB Beta Backward RSE

plot_hb_posterior(df_s25, "S25: HB Beta Backward — All Domain")
S25: HB Beta Posterior — All Domain

S25: HB Beta Posterior — All Domain

S26 — Backward · RSE-NB

cat("=== Skenario 26: HB Backward RSE-NB ===\n")
## === Skenario 26: HB Backward RSE-NB ===
df_s26 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_jenks),
  aux_fn   = seleksi_backward, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ G1_RSE_Rendah ] y_logit | n = 62 | Vars: X8, X29_mean

## 
##   [HB Iter 1] Vars aktif (2): X8, X29_mean
##              Mean      SD    2.5%     25%     50%     75%    97.5%
## intercept -2.1093 0.02553 -2.1588 -2.1271 -2.1088 -2.0924 -2.05940
## X8         0.1665 0.03116  0.1069  0.1448  0.1663  0.1877  0.22705
## X29_mean  -0.1383 0.03109 -0.1998 -0.1590 -0.1377 -0.1174 -0.07766
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X8, X29_mean 
##   [ G2_RSE_Tinggi ] y_logit | n = 19 | Vars: X8

## 
##   [HB Iter 1] Vars aktif (1): X8
##              Mean      SD    2.5%     25%     50%     75%   97.5%
## intercept -3.2088 0.08665 -3.3771 -3.2665 -3.2087 -3.1511 -3.0399
## X8         0.5422 0.09757  0.3553  0.4743  0.5413  0.6105  0.7297
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X8
summary(df_s26[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct          RSE            RSE_hb     
##  Min.   : 0.08   Min.   : 1.09   Min.   : 22.9   Min.   : 5.95  
##  1st Qu.: 6.18   1st Qu.: 6.21   1st Qu.: 38.3   1st Qu.: 7.48  
##  Median : 9.32   Median : 9.34   Median : 44.4   Median : 9.58  
##  Mean   :10.08   Mean   :10.09   Mean   : 47.6   Mean   :15.24  
##  3rd Qu.:13.93   3rd Qu.:13.76   3rd Qu.: 53.5   3rd Qu.:13.97  
##  Max.   :24.05   Max.   :23.57   Max.   :101.7   Max.   :51.47
plot_rse(df_s26,"RSE","RSE_hb","Direct","HB-BK RSE-NB","S26: HB Beta Backward — RSE Natural Break")
S26: HB Beta Backward RSE Natural Break

S26: HB Beta Backward RSE Natural Break

plot_hb_posterior(df_s26, "S26: HB Beta Backward — RSE Natural Break", group_col = "grup_jenks")
S26: HB Beta Posterior — RSE Natural Break

S26: HB Beta Posterior — RSE Natural Break

S27 — Backward · RSE-ES

cat("=== Skenario 27: HB Backward RSE-ES ===\n")
## === Skenario 27: HB Backward RSE-ES ===
df_s27 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_equal),
  aux_fn   = seleksi_backward, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ G1_RSE_Bawah ] y_logit | n = 41 | Vars: X19, X29_jumlah

## 
##   [HB Iter 1] Vars aktif (2): X19, X29_jumlah
##               Mean      SD    2.5%     25%     50%     75%   97.5%
## intercept  -1.9542 0.02821 -2.0089 -1.9733 -1.9546 -1.9347 -1.9002
## X19        -0.2278 0.02991 -0.2865 -0.2478 -0.2278 -0.2076 -0.1696
## X29_jumlah -0.2052 0.02893 -0.2617 -0.2250 -0.2051 -0.1854 -0.1499
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X19, X29_jumlah 
##   [ G2_RSE_Atas ] y_logit | n = 40 | Vars: X45

## 
##   [HB Iter 1] Vars aktif (1): X45
##             Mean      SD    2.5%    25%     50%     75%   97.5%
## intercept -2.723 0.04221 -2.8050 -2.751 -2.7225 -2.6951 -2.6397
## X45       -0.471 0.04692 -0.5658 -0.502 -0.4712 -0.4394 -0.3808
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X45
summary(df_s27[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct          RSE            RSE_hb     
##  Min.   : 0.08   Min.   : 2.03   Min.   : 22.9   Min.   : 7.07  
##  1st Qu.: 6.18   1st Qu.: 6.62   1st Qu.: 38.3   1st Qu.: 8.98  
##  Median : 9.32   Median : 8.58   Median : 44.4   Median :19.94  
##  Mean   :10.08   Mean   :10.16   Mean   : 47.6   Mean   :17.43  
##  3rd Qu.:13.93   3rd Qu.:13.26   3rd Qu.: 53.5   3rd Qu.:23.40  
##  Max.   :24.05   Max.   :23.56   Max.   :101.7   Max.   :35.78
plot_rse(df_s27,"RSE","RSE_hb","Direct","HB-BK RSE-ES","S27: HB Beta Backward — RSE Equal Size")
S27: HB Beta Backward RSE Equal Size

S27: HB Beta Backward RSE Equal Size

plot_hb_posterior(df_s27, "S27: HB Beta Backward — RSE Equal Size", group_col = "grup_equal")
S27: HB Beta Posterior — RSE Equal Size

S27: HB Beta Posterior — RSE Equal Size

S28 — Backward · Cluster

cat("=== Skenario 28: HB Backward Cluster ===\n")
## === Skenario 28: HB Backward Cluster ===
df_s28 <- run_on_segments(
  seg_list = split(df_base, df_base$cluster_bk_logit),
  aux_fn   = seleksi_backward, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ Cluster_1 ] y_logit | n = 10 | Vars: X30

## 
##   [HB Iter 1] Vars aktif (1): X30
##              Mean     SD   2.5%     25%     50%     75%  97.5%
## intercept -3.4229 0.1385 -3.688 -3.5178 -3.4242 -3.3282 -3.147
## X30       -0.6121 0.1499 -0.911 -0.7141 -0.6121 -0.5102 -0.322
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X30 
##   [ Cluster_2 ] y_logit | n = 71 | Vars: X45_mean, X25_jumlah, X33_mean

## 
##   [HB Iter 1] Vars aktif (3): X45_mean, X25_jumlah, X33_mean
##               Mean      SD    2.5%     25%     50%     75%    97.5%
## intercept  -2.1941 0.03042 -2.2543 -2.2143 -2.1944 -2.1744 -2.13238
## X45_mean   -0.1492 0.02983 -0.2078 -0.1701 -0.1490 -0.1286 -0.09147
## X25_jumlah -0.1343 0.03066 -0.1932 -0.1548 -0.1342 -0.1135 -0.07427
## X33_mean   -0.1517 0.03207 -0.2141 -0.1733 -0.1513 -0.1301 -0.08945
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X45_mean, X25_jumlah, X33_mean
summary(df_s28[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct           RSE            RSE_hb    
##  Min.   : 0.08   Min.   : 0.695   Min.   : 22.9   Min.   :15.9  
##  1st Qu.: 6.18   1st Qu.: 7.141   1st Qu.: 38.3   1st Qu.:19.1  
##  Median : 9.32   Median : 9.624   Median : 44.4   Median :22.1  
##  Mean   :10.08   Mean   :10.100   Mean   : 47.6   Mean   :24.3  
##  3rd Qu.:13.93   3rd Qu.:12.760   3rd Qu.: 53.5   3rd Qu.:25.9  
##  Max.   :24.05   Max.   :21.564   Max.   :101.7   Max.   :61.8
plot_rse(df_s28,"RSE","RSE_hb","Direct","HB-BK Cluster","S28: HB Beta Backward — Cluster Aux")
S28: HB Beta Backward Cluster-Aux

S28: HB Beta Backward Cluster-Aux

plot_hb_posterior(df_s28, "S28: HB Beta Backward — Cluster Aux",
                  group_col = "cluster_bk_logit")
S28: HB Beta Posterior — Cluster Aux (A1-Logit)

S28: HB Beta Posterior — Cluster Aux (A1-Logit)

S29 — Top-n/10 · All

cat("=== Skenario 29: HB TopN All ===\n")
## === Skenario 29: HB TopN All ===
df_s29 <- run_on_segments(
  seg_list = list("All" = df_base),
  aux_fn   = seleksi_topn, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ All ] y_logit | n = 81 | Vars: X8, X45, X44, X39, X36_mean, X30_mean, X28, X1

## 
##   [HB Iter 1] Vars aktif (8): X8, X45, X44, X39, X36_mean, X30_mean, X28, X1
##               Mean      SD     2.5%      25%      50%      75%    97.5%
## intercept -2.31020 0.03037 -2.36904 -2.33015 -2.31053 -2.28994 -2.25185
## X8         0.27940 0.06539  0.15039  0.23526  0.28188  0.32437  0.40544
## X45       -0.26801 0.05041 -0.36618 -0.30260 -0.26865 -0.23305 -0.17103
## X44        0.32351 0.06986  0.19086  0.27536  0.32254  0.36975  0.46570
## X39       -0.04086 0.04654 -0.13212 -0.07195 -0.04067 -0.01032  0.05194
## X36_mean  -0.20548 0.07312 -0.34828 -0.25517 -0.20643 -0.15610 -0.06113
## X30_mean   0.05908 0.05067 -0.03648  0.02376  0.05757  0.09329  0.15853
## X28        0.11093 0.03863  0.03646  0.08493  0.11064  0.13742  0.18713
## X1         0.03067 0.04442 -0.05703  0.00127  0.03067  0.06068  0.11653
## 
##   [HB] ✗ Iter 1 — CI menyeberang nol: [X39, X30_mean, X1]
##   [HB]   → Keluarkan 'X30_mean'  (SD = 0.05067, terbesar)

## 
##   [HB Iter 2] Vars aktif (7): X8, X45, X44, X39, X36_mean, X28, X1
##               Mean      SD     2.5%      25%     50%      75%    97.5%
## intercept -2.31498 0.02997 -2.37463 -2.33506 -2.3142 -2.29468 -2.25711
## X8         0.26531 0.06534  0.13623  0.22075  0.2663  0.30921  0.39429
## X45       -0.25752 0.04897 -0.35089 -0.29125 -0.2573 -0.22475 -0.16252
## X44        0.29983 0.06886  0.16705  0.25293  0.2987  0.34650  0.43657
## X39       -0.04836 0.04603 -0.13883 -0.07890 -0.0495 -0.01737  0.04467
## X36_mean  -0.15815 0.06755 -0.29109 -0.20454 -0.1570 -0.11255 -0.02528
## X28        0.10670 0.03813  0.03233  0.08133  0.1070  0.13155  0.18140
## X1         0.03928 0.04501 -0.04982  0.00968  0.0394  0.06957  0.12794
## 
##   [HB] ✗ Iter 2 — CI menyeberang nol: [X39, X1]
##   [HB]   → Keluarkan 'X39'  (SD = 0.04603, terbesar)

## 
##   [HB Iter 3] Vars aktif (6): X8, X45, X44, X36_mean, X28, X1
##               Mean      SD     2.5%      25%     50%      75%    97.5%
## intercept -2.30991 0.03041 -2.37063 -2.33057 -2.3099 -2.28992 -2.25058
## X8         0.28581 0.06274  0.16260  0.24451  0.2862  0.32771  0.41236
## X45       -0.25757 0.04721 -0.34978 -0.28900 -0.2577 -0.22535 -0.16600
## X44        0.28485 0.06619  0.15857  0.24067  0.2839  0.33083  0.41566
## X36_mean  -0.16002 0.06715 -0.28902 -0.20552 -0.1605 -0.11461 -0.02755
## X28        0.11069 0.03755  0.03546  0.08549  0.1108  0.13566  0.18353
## X1         0.04206 0.04393 -0.04180  0.01266  0.0409  0.07173  0.12882
## 
##   [HB] ✗ Iter 3 — CI menyeberang nol: [X1]
##   [HB]   → Keluarkan 'X1'  (SD = 0.04393, terbesar)

## 
##   [HB Iter 4] Vars aktif (5): X8, X45, X44, X36_mean, X28
##               Mean      SD     2.5%     25%      50%      75%    97.5%
## intercept -2.31031 0.03000 -2.36969 -2.3302 -2.31035 -2.28995 -2.25229
## X8         0.29216 0.06228  0.17403  0.2493  0.29180  0.33268  0.41704
## X45       -0.25362 0.04908 -0.35216 -0.2862 -0.25277 -0.22124 -0.16014
## X44        0.27493 0.06534  0.14475  0.2315  0.27535  0.31974  0.39951
## X36_mean  -0.12125 0.05973 -0.23697 -0.1619 -0.12134 -0.08119 -0.00526
## X28        0.09883 0.03670  0.02813  0.0734  0.09919  0.12317  0.17107
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 4.
##   [HB] ✓ Variabel final: X8, X45, X44, X36_mean, X28
summary(df_s29[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct          RSE            RSE_hb    
##  Min.   : 0.08   Min.   : 1.84   Min.   : 22.9   Min.   :18.8  
##  1st Qu.: 6.18   1st Qu.: 7.36   1st Qu.: 38.3   1st Qu.:21.9  
##  Median : 9.32   Median : 9.95   Median : 44.4   Median :24.5  
##  Mean   :10.08   Mean   :10.15   Mean   : 47.6   Mean   :25.7  
##  3rd Qu.:13.93   3rd Qu.:12.65   3rd Qu.: 53.5   3rd Qu.:27.4  
##  Max.   :24.05   Max.   :19.97   Max.   :101.7   Max.   :41.7
plot_rse(df_s29,"RSE","RSE_hb","Direct","HB-TN All","S29: HB Beta Top-n/10 — All Domain")
S29: HB Beta Top-n/10 All

S29: HB Beta Top-n/10 All

plot_hb_posterior(df_s29, "S29: HB Beta Top-n/10 — All Domain")
S29: HB Beta Posterior — All Domain

S29: HB Beta Posterior — All Domain

S30 — Top-n/10 · RSE-NB

cat("=== Skenario 30: HB TopN RSE-NB ===\n")
## === Skenario 30: HB TopN RSE-NB ===
df_s30 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_jenks),
  aux_fn   = seleksi_topn, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ G1_RSE_Rendah ] y_logit | n = 62 | Vars: X8, X36_mean, X29_mean, X31_mean, X26

## 
##   [HB Iter 1] Vars aktif (5): X8, X36_mean, X29_mean, X31_mean, X26
##               Mean      SD     2.5%      25%      50%      75%    97.5%
## intercept -2.11045 0.02544 -2.15953 -2.12789 -2.11054 -2.09365 -2.05986
## X8         0.14939 0.04416  0.06153  0.12040  0.14921  0.17892  0.23497
## X36_mean  -0.01930 0.05322 -0.12681 -0.05366 -0.01865  0.01600  0.08655
## X29_mean  -0.09892 0.04838 -0.19229 -0.13297 -0.09874 -0.06521 -0.00387
## X31_mean  -0.04409 0.04688 -0.13701 -0.07440 -0.04420 -0.01315  0.05192
## X26        0.00049 0.04535 -0.08645 -0.03089  0.00017  0.03152  0.09109
## 
##   [HB] ✗ Iter 1 — CI menyeberang nol: [X36_mean, X31_mean, X26]
##   [HB]   → Keluarkan 'X36_mean'  (SD = 0.05322, terbesar)

## 
##   [HB Iter 2] Vars aktif (4): X8, X29_mean, X31_mean, X26
##               Mean      SD     2.5%      25%      50%      75%    97.5%
## intercept -2.10918 0.02559 -2.15922 -2.12661 -2.10888 -2.09191 -2.05886
## X8         0.15205 0.03836  0.07932  0.12585  0.15086  0.17791  0.22791
## X29_mean  -0.10557 0.04064 -0.18438 -0.13288 -0.10610 -0.07816 -0.02705
## X31_mean  -0.04950 0.04188 -0.13268 -0.07797 -0.04963 -0.02145  0.03275
## X26       -0.00062 0.04130 -0.08143 -0.02809 -0.00124  0.02706  0.07971
## 
##   [HB] ✗ Iter 2 — CI menyeberang nol: [X31_mean, X26]
##   [HB]   → Keluarkan 'X31_mean'  (SD = 0.04188, terbesar)

## 
##   [HB Iter 3] Vars aktif (3): X8, X29_mean, X26
##               Mean      SD     2.5%     25%      50%      75%    97.5%
## intercept -2.11096 0.02590 -2.16192 -2.1283 -2.11120 -2.09378 -2.05918
## X8         0.16474 0.03570  0.09444  0.1410  0.16488  0.18895  0.23467
## X29_mean  -0.12808 0.03583 -0.19878 -0.1521 -0.12812 -0.10415 -0.05967
## X26       -0.01333 0.03855 -0.08951 -0.0395 -0.01316  0.01248  0.06152
## 
##   [HB] ✗ Iter 3 — CI menyeberang nol: [X26]
##   [HB]   → Keluarkan 'X26'  (SD = 0.03855, terbesar)

## 
##   [HB Iter 4] Vars aktif (2): X8, X29_mean
##              Mean      SD    2.5%     25%     50%     75%    97.5%
## intercept -2.1093 0.02553 -2.1588 -2.1271 -2.1088 -2.0924 -2.05940
## X8         0.1665 0.03116  0.1069  0.1448  0.1663  0.1877  0.22705
## X29_mean  -0.1383 0.03109 -0.1998 -0.1590 -0.1377 -0.1174 -0.07766
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 4.
##   [HB] ✓ Variabel final: X8, X29_mean 
##   [ G2_RSE_Tinggi ] y_logit | n = 19 | Vars: X8

## 
##   [HB Iter 1] Vars aktif (1): X8
##              Mean      SD    2.5%     25%     50%     75%   97.5%
## intercept -3.2088 0.08665 -3.3771 -3.2665 -3.2087 -3.1511 -3.0399
## X8         0.5422 0.09757  0.3553  0.4743  0.5413  0.6105  0.7297
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X8
summary(df_s30[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct          RSE            RSE_hb     
##  Min.   : 0.08   Min.   : 1.09   Min.   : 22.9   Min.   : 5.95  
##  1st Qu.: 6.18   1st Qu.: 6.21   1st Qu.: 38.3   1st Qu.: 7.48  
##  Median : 9.32   Median : 9.34   Median : 44.4   Median : 9.58  
##  Mean   :10.08   Mean   :10.09   Mean   : 47.6   Mean   :15.24  
##  3rd Qu.:13.93   3rd Qu.:13.76   3rd Qu.: 53.5   3rd Qu.:13.97  
##  Max.   :24.05   Max.   :23.57   Max.   :101.7   Max.   :51.47
plot_rse(df_s30,"RSE","RSE_hb","Direct","HB-TN RSE-NB","S30: HB Beta Top-n/10 — RSE Natural Break")
S30: HB Beta Top-n/10 RSE Natural Break

S30: HB Beta Top-n/10 RSE Natural Break

plot_hb_posterior(df_s30, "S30: HB Beta Top-n/10 — RSE Natural Break", group_col = "grup_jenks")
S30: HB Beta Posterior — RSE Natural Break

S30: HB Beta Posterior — RSE Natural Break

S31 — Top-n/10 · RSE-ES

cat("=== Skenario 31: HB TopN RSE-ES ===\n")
## === Skenario 31: HB TopN RSE-ES ===
df_s31 <- run_on_segments(
  seg_list = split(df_base, df_base$grup_equal),
  aux_fn   = seleksi_topn, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ G1_RSE_Bawah ] y_logit | n = 41 | Vars: X19, X29_jumlah, X10_jumlah, X8

## 
##   [HB Iter 1] Vars aktif (4): X19, X29_jumlah, X10_jumlah, X8
##                Mean      SD     2.5%      25%      50%      75%    97.5%
## intercept  -1.95820 0.02822 -2.01480 -1.97686 -1.95710 -1.93873 -1.90431
## X19        -0.19015 0.02975 -0.24906 -0.21041 -0.19041 -0.16983 -0.13114
## X29_jumlah -0.12340 0.03904 -0.20220 -0.14932 -0.12274 -0.09777 -0.04506
## X10_jumlah -0.07314 0.04182 -0.15150 -0.10214 -0.07342 -0.04589  0.01015
## X8          0.09144 0.03059  0.03296  0.07019  0.09115  0.11224  0.15206
## 
##   [HB] ✗ Iter 1 — CI menyeberang nol: [X10_jumlah]
##   [HB]   → Keluarkan 'X10_jumlah'  (SD = 0.04182, terbesar)

## 
##   [HB Iter 2] Vars aktif (3): X19, X29_jumlah, X8
##                Mean      SD     2.5%      25%      50%     75%   97.5%
## intercept  -1.95514 0.02885 -2.01163 -1.97494 -1.95480 -1.9362 -1.8977
## X19        -0.19373 0.03024 -0.25123 -0.21440 -0.19307 -0.1734 -0.1345
## X29_jumlah -0.19011 0.02962 -0.24665 -0.21030 -0.18992 -0.1698 -0.1332
## X8          0.08404 0.03121  0.02382  0.06345  0.08385  0.1048  0.1449
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 2.
##   [HB] ✓ Variabel final: X19, X29_jumlah, X8 
##   [ G2_RSE_Atas ] y_logit | n = 40 | Vars: X45, X8, X1, X40_jumlah

## 
##   [HB Iter 1] Vars aktif (4): X45, X8, X1, X40_jumlah
##                Mean      SD     2.5%      25%      50%      75%    97.5%
## intercept  -2.73375 0.04316 -2.82144 -2.76241 -2.73278 -2.70442 -2.64861
## X45        -0.40329 0.06533 -0.53118 -0.44701 -0.40347 -0.36118 -0.27343
## X8         -0.07735 0.06398 -0.20356 -0.12012 -0.07830 -0.03376  0.04864
## X1         -0.14110 0.05144 -0.24170 -0.17582 -0.14071 -0.10714 -0.04034
## X40_jumlah  0.05078 0.04611 -0.03777  0.01917  0.05014  0.08285  0.13996
## 
##   [HB] ✗ Iter 1 — CI menyeberang nol: [X8, X40_jumlah]
##   [HB]   → Keluarkan 'X8'  (SD = 0.06398, terbesar)

## 
##   [HB Iter 2] Vars aktif (3): X45, X1, X40_jumlah
##                Mean      SD     2.5%      25%      50%      75%    97.5%
## intercept  -2.73495 0.04235 -2.81700 -2.76325 -2.73579 -2.70629 -2.65338
## X45        -0.36094 0.05613 -0.47084 -0.39942 -0.36098 -0.32292 -0.25047
## X1         -0.12289 0.04844 -0.21737 -0.15614 -0.12290 -0.09019 -0.02497
## X40_jumlah  0.04719 0.04723 -0.04796  0.01556  0.04733  0.07846  0.13975
## 
##   [HB] ✗ Iter 2 — CI menyeberang nol: [X40_jumlah]
##   [HB]   → Keluarkan 'X40_jumlah'  (SD = 0.04723, terbesar)

## 
##   [HB Iter 3] Vars aktif (2): X45, X1
##              Mean      SD    2.5%     25%     50%      75%    97.5%
## intercept -2.7275 0.04201 -2.8093 -2.7558 -2.7281 -2.69895 -2.64561
## X45       -0.3976 0.05494 -0.5044 -0.4354 -0.3962 -0.36012 -0.29248
## X1        -0.1193 0.04645 -0.2098 -0.1510 -0.1201 -0.08783 -0.02788
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 3.
##   [HB] ✓ Variabel final: X45, X1
summary(df_s31[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct          RSE            RSE_hb     
##  Min.   : 0.08   Min.   : 2.04   Min.   : 22.9   Min.   : 7.23  
##  1st Qu.: 6.18   1st Qu.: 6.36   1st Qu.: 38.3   1st Qu.: 9.39  
##  Median : 9.32   Median : 8.43   Median : 44.4   Median :19.15  
##  Mean   :10.08   Mean   :10.15   Mean   : 47.6   Mean   :17.71  
##  3rd Qu.:13.93   3rd Qu.:13.32   3rd Qu.: 53.5   3rd Qu.:23.85  
##  Max.   :24.05   Max.   :23.49   Max.   :101.7   Max.   :35.74
plot_rse(df_s31,"RSE","RSE_hb","Direct","HB-TN RSE-ES","S31: HB Beta Top-n/10 — RSE Equal Size")
S31: HB Beta Top-n/10 RSE Equal Size

S31: HB Beta Top-n/10 RSE Equal Size

plot_hb_posterior(df_s31, "S31: HB Beta Top-n/10 — RSE Equal Size", group_col = "grup_equal")
S31: HB Beta Posterior — RSE Equal Size

S31: HB Beta Posterior — RSE Equal Size

S32 — Top-n/10 · Cluster

cat("=== Skenario 32: HB TopN Cluster ===\n")
## === Skenario 32: HB TopN Cluster ===
df_s32 <- run_on_segments(
  seg_list = split(df_base, df_base$cluster_tn_logit),
  aux_fn   = seleksi_topn, model_fn = run_hbbeta, y_col = "y_logit", min_n = 5
)
##   [ Cluster_1 ] y_logit | n = 67 | Vars: X45, X25_jumlah, X11_mean, X26_mean, X43_mean, X10_jumlah

## 
##   [HB Iter 1] Vars aktif (6): X45, X25_jumlah, X11_mean, X26_mean, X43_mean, X10_jumlah
##                Mean      SD     2.5%      25%      50%      75%    97.5%
## intercept  -2.16498 0.03095 -2.22392 -2.18596 -2.16496 -2.14386 -2.10472
## X45        -0.10142 0.03433 -0.17036 -0.12447 -0.10119 -0.07832 -0.03409
## X25_jumlah -0.09395 0.03332 -0.15807 -0.11706 -0.09406 -0.07133 -0.02843
## X11_mean    0.03180 0.03471 -0.03604  0.00741  0.03229  0.05506  0.10103
## X26_mean   -0.08824 0.03347 -0.15429 -0.11079 -0.08870 -0.06556 -0.02158
## X43_mean   -0.06496 0.03135 -0.12669 -0.08624 -0.06534 -0.04403 -0.00412
## X10_jumlah -0.09838 0.03211 -0.16063 -0.12055 -0.09880 -0.07699 -0.03574
## 
##   [HB] ✗ Iter 1 — CI menyeberang nol: [X11_mean]
##   [HB]   → Keluarkan 'X11_mean'  (SD = 0.03471, terbesar)

## 
##   [HB Iter 2] Vars aktif (5): X45, X25_jumlah, X26_mean, X43_mean, X10_jumlah
##                Mean      SD    2.5%      25%      50%      75%    97.5%
## intercept  -2.19288 0.02980 -2.2516 -2.21308 -2.19313 -2.17340 -2.13437
## X45        -0.10888 0.03252 -0.1717 -0.13101 -0.10898 -0.08720 -0.04367
## X25_jumlah -0.08238 0.03191 -0.1446 -0.10435 -0.08175 -0.06092 -0.01950
## X26_mean   -0.11212 0.03364 -0.1772 -0.13535 -0.11236 -0.08878 -0.04576
## X43_mean   -0.06827 0.03302 -0.1325 -0.09081 -0.06810 -0.04544 -0.00411
## X10_jumlah -0.07377 0.03141 -0.1353 -0.09446 -0.07363 -0.05221 -0.01357
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 2.
##   [HB] ✓ Variabel final: X45, X25_jumlah, X26_mean, X43_mean, X10_jumlah 
##   [ Cluster_2 ] y_logit | n = 14 | Vars: X30

## 
##   [HB Iter 1] Vars aktif (1): X30
##              Mean     SD    2.5%     25%     50%     75%  97.5%
## intercept -3.1744 0.1205 -3.4098 -3.2584 -3.1721 -3.0907 -2.938
## X30       -0.4275 0.1241 -0.6738 -0.5118 -0.4289 -0.3422 -0.183
## 
##   [HB] ✓ Semua CI aman — selesai pada iterasi 1.
##   [HB] ✓ Variabel final: X30
summary(df_s32[, c("Estimasi","y_hb_pct","RSE","RSE_hb")])
##     Estimasi        y_hb_pct          RSE            RSE_hb     
##  Min.   : 0.08   Min.   : 1.00   Min.   : 22.9   Min.   : 7.49  
##  1st Qu.: 6.18   1st Qu.: 6.01   1st Qu.: 38.3   1st Qu.: 9.12  
##  Median : 9.32   Median : 9.42   Median : 44.4   Median :11.38  
##  Mean   :10.08   Mean   :10.10   Mean   : 47.6   Mean   :17.57  
##  3rd Qu.:13.93   3rd Qu.:13.38   3rd Qu.: 53.5   3rd Qu.:15.59  
##  Max.   :24.05   Max.   :23.58   Max.   :101.7   Max.   :65.62
plot_rse(df_s32,"RSE","RSE_hb","Direct","HB-TN Cluster","S32: HB Beta Top-n/10 — Cluster Aux")
S32: HB Beta Top-n/10 Cluster-Aux

S32: HB Beta Top-n/10 Cluster-Aux

plot_hb_posterior(df_s32, "S32: HB Beta Top-n/10 — Cluster Aux",
                  group_col = "cluster_tn_logit")
S32: HB Beta Posterior — Cluster Aux (A2-Logit)

S32: HB Beta Posterior — Cluster Aux (A2-Logit)


9. Evaluasi Komparatif — 32 Skenario

Kumpulkan Hasil

# Standarisasi: tiap df hasil ditambah y_model & RSE_model
standardize_result <- function(df, y_col, rse_col, skenario_id) {
  if (is.null(df)) return(NULL)
  df %>%
    mutate(
      y_model   = .data[[y_col]],
      RSE_model = .data[[rse_col]],
      Skenario  = skenario_id
    ) %>%
    dplyr::select(Kako, Estimasi, RSE, y_model, RSE_model, Skenario)
}

# Baseline direct
df_direct_eval <- df_base %>%
  mutate(RSE_direct_eval = RSE_direct_col) %>%
  dplyr::select(Kako, Estimasi, RSE, RSE_direct_eval)

# ── Tabel distribusi RSE ─────────────────────────────────────────────────
make_tabel_row <- function(df, rse_col, label) {
  if (is.null(df) || !rse_col %in% names(df)) {
    return(data.frame(Skenario = label, `RSE>=25` = NA, `RSE<25` = NA,
                      `%<25` = NA, `%<15` = NA, `CV Mean` = NA,
                      check.names = FALSE))
  }
  tabel_rse(df, rse_col, label)
}

eval_rows <- list(
  make_tabel_row(df_base,  "RSE_direct_col",  "0. Direct"),
  # EBLUP
  make_tabel_row(df_s1,  "RSE_eblup", "S01 EBLUP-BK All"),
  make_tabel_row(df_s2,  "RSE_eblup", "S02 EBLUP-BK RSE-NB"),
  make_tabel_row(df_s3,  "RSE_eblup", "S03 EBLUP-BK RSE-ES"),
  make_tabel_row(df_s4,  "RSE_eblup", "S04 EBLUP-BK Cluster"),
  make_tabel_row(df_s5,  "RSE_eblup", "S05 EBLUP-TN All"),
  make_tabel_row(df_s6,  "RSE_eblup", "S06 EBLUP-TN RSE-NB"),
  make_tabel_row(df_s7,  "RSE_eblup", "S07 EBLUP-TN RSE-ES"),
  make_tabel_row(df_s8,  "RSE_eblup", "S08 EBLUP-TN Cluster"),
  # GLMM
  make_tabel_row(df_s9,  "RSE_glmm",  "S09 GLMM-BK All"),
  make_tabel_row(df_s10, "RSE_glmm",  "S10 GLMM-BK RSE-NB"),
  make_tabel_row(df_s11, "RSE_glmm",  "S11 GLMM-BK RSE-ES"),
  make_tabel_row(df_s12, "RSE_glmm",  "S12 GLMM-BK Cluster"),
  make_tabel_row(df_s13, "RSE_glmm",  "S13 GLMM-TN All"),
  make_tabel_row(df_s14, "RSE_glmm",  "S14 GLMM-TN RSE-NB"),
  make_tabel_row(df_s15, "RSE_glmm",  "S15 GLMM-TN RSE-ES"),
  make_tabel_row(df_s16, "RSE_glmm",  "S16 GLMM-TN Cluster"),
  # EB Beta
  make_tabel_row(df_s17, "RSE_eb",    "S17 EB-BK All"),
  make_tabel_row(df_s18, "RSE_eb",    "S18 EB-BK RSE-NB"),
  make_tabel_row(df_s19, "RSE_eb",    "S19 EB-BK RSE-ES"),
  make_tabel_row(df_s20, "RSE_eb",    "S20 EB-BK Cluster"),
  make_tabel_row(df_s21, "RSE_eb",    "S21 EB-TN All"),
  make_tabel_row(df_s22, "RSE_eb",    "S22 EB-TN RSE-NB"),
  make_tabel_row(df_s23, "RSE_eb",    "S23 EB-TN RSE-ES"),
  make_tabel_row(df_s24, "RSE_eb",    "S24 EB-TN Cluster"),
  # HB Beta
  make_tabel_row(df_s25, "RSE_hb",    "S25 HB-BK All"),
  make_tabel_row(df_s26, "RSE_hb",    "S26 HB-BK RSE-NB"),
  make_tabel_row(df_s27, "RSE_hb",    "S27 HB-BK RSE-ES"),
  make_tabel_row(df_s28, "RSE_hb",    "S28 HB-BK Cluster"),
  make_tabel_row(df_s29, "RSE_hb",    "S29 HB-TN All"),
  make_tabel_row(df_s30, "RSE_hb",    "S30 HB-TN RSE-NB"),
  make_tabel_row(df_s31, "RSE_hb",    "S31 HB-TN RSE-ES"),
  make_tabel_row(df_s32, "RSE_hb",    "S32 HB-TN Cluster")
)

tabel_eval <- bind_rows(eval_rows)

Tabel Distribusi RSE

kable(tabel_eval,
      caption = "Distribusi RSE — 32 Skenario + Direct",
      col.names = c("Skenario", "RSE≥25", "RSE<25", "% <25%", "% <15%", "CV Mean")) %>%
  kable_styling(bootstrap_options = c("striped","hover","condensed","bordered"),
                full_width = FALSE, font_size = 12) %>%
  row_spec(1, background = "#fff3cd") %>%
  row_spec(
    which(tabel_eval$`%<25` == max(tabel_eval$`%<25`, na.rm = TRUE))[-1],
    bold = TRUE, background = "#d4edda"
  ) %>%
  pack_rows("EBLUP", 2, 9) %>%
  pack_rows("GLMM", 10, 17) %>%
  pack_rows("EB Beta-Binomial", 18, 25) %>%
  pack_rows("HB Beta-Binomial", 26, 33)
Distribusi RSE — 32 Skenario + Direct
Skenario RSE≥25 RSE<25 % <25% % <15% CV Mean
  1. Direct
80 1 1.2 0.0 47.56
EBLUP
S01 EBLUP-BK All 66 15 18.5 0.0 32.57
S02 EBLUP-BK RSE-NB 26 55 67.9 35.8 27.37
S03 EBLUP-BK RSE-ES 48 33 40.7 0.0 31.20
S04 EBLUP-BK Cluster 66 15 18.5 0.0 33.65
S05 EBLUP-TN All 72 9 11.1 0.0 33.79
S06 EBLUP-TN RSE-NB 27 54 66.7 27.2 28.54
S07 EBLUP-TN RSE-ES 53 28 34.6 0.0 33.04
S08 EBLUP-TN Cluster 75 6 7.4 0.0 35.84
GLMM
S09 GLMM-BK All 34 47 58.0 42.0 27.81
S10 GLMM-BK RSE-NB 12 69 85.2 84.0 11.59
S11 GLMM-BK RSE-ES 13 68 84.0 70.4 19.76
S12 GLMM-BK Cluster 19 62 76.5 53.1 20.99
S13 GLMM-TN All 35 46 56.8 39.5 27.45
S14 GLMM-TN RSE-NB 12 69 85.2 82.7 11.36
S15 GLMM-TN RSE-ES 13 68 84.0 69.1 16.87
S16 GLMM-TN Cluster 16 65 80.2 56.8 23.84
EB Beta-Binomial
S17 EB-BK All 79 2 2.5 0.0 37.68
S18 EB-BK RSE-NB 75 6 7.4 0.0 36.29
S19 EB-BK RSE-ES 71 10 12.3 0.0 35.39
S20 EB-BK Cluster 79 2 2.5 0.0 36.36
S21 EB-TN All 79 2 2.5 0.0 37.66
S22 EB-TN RSE-NB 75 6 7.4 0.0 36.29
S23 EB-TN RSE-ES 71 10 12.3 0.0 35.33
S24 EB-TN Cluster 79 2 2.5 0.0 36.38
HB Beta-Binomial
S25 HB-BK All 36 45 55.6 0.0 25.75
S26 HB-BK RSE-NB 19 62 76.5 76.5 15.24
S27 HB-BK RSE-ES 16 65 80.2 46.9 17.43
S28 HB-BK Cluster 22 59 72.8 0.0 24.35
S29 HB-TN All 34 47 58.0 0.0 25.66
S30 HB-TN RSE-NB 19 62 76.5 76.5 15.24
S31 HB-TN RSE-ES 17 64 79.0 46.9 17.71
S32 HB-TN Cluster 16 65 80.2 71.6 17.57

Metrik Akurasi (RB & RMSE)

get_est <- function(df, col) if (!is.null(df) && col %in% names(df)) df[[col]] else NULL

metrik_rows <- list(
  metrik(get_est(df_s1,  "y_eblup"),   df_s1$Estimasi,   "S01 EBLUP-BK All"),
  metrik(get_est(df_s2,  "y_eblup"),   df_s2$Estimasi,   "S02 EBLUP-BK RSE-NB"),
  metrik(get_est(df_s3,  "y_eblup"),   df_s3$Estimasi,   "S03 EBLUP-BK RSE-ES"),
  metrik(get_est(df_s4,  "y_eblup"),   df_s4$Estimasi,   "S04 EBLUP-BK Cluster"),
  metrik(get_est(df_s5,  "y_eblup"),   df_s5$Estimasi,   "S05 EBLUP-TN All"),
  metrik(get_est(df_s6,  "y_eblup"),   df_s6$Estimasi,   "S06 EBLUP-TN RSE-NB"),
  metrik(get_est(df_s7,  "y_eblup"),   df_s7$Estimasi,   "S07 EBLUP-TN RSE-ES"),
  metrik(get_est(df_s8,  "y_eblup"),   df_s8$Estimasi,   "S08 EBLUP-TN Cluster"),
  metrik(get_est(df_s9,  "y_glmm"),    df_s9$Estimasi,   "S09 GLMM-BK All"),
  metrik(get_est(df_s10, "y_glmm"),    df_s10$Estimasi,  "S10 GLMM-BK RSE-NB"),
  metrik(get_est(df_s11, "y_glmm"),    df_s11$Estimasi,  "S11 GLMM-BK RSE-ES"),
  metrik(get_est(df_s12, "y_glmm"),    df_s12$Estimasi,  "S12 GLMM-BK Cluster"),
  metrik(get_est(df_s13, "y_glmm"),    df_s13$Estimasi,  "S13 GLMM-TN All"),
  metrik(get_est(df_s14, "y_glmm"),    df_s14$Estimasi,  "S14 GLMM-TN RSE-NB"),
  metrik(get_est(df_s15, "y_glmm"),    df_s15$Estimasi,  "S15 GLMM-TN RSE-ES"),
  metrik(get_est(df_s16, "y_glmm"),    df_s16$Estimasi,  "S16 GLMM-TN Cluster"),
  metrik(get_est(df_s17, "y_eb_pct"),  df_s17$Estimasi,  "S17 EB-BK All"),
  metrik(get_est(df_s18, "y_eb_pct"),  df_s18$Estimasi,  "S18 EB-BK RSE-NB"),
  metrik(get_est(df_s19, "y_eb_pct"),  df_s19$Estimasi,  "S19 EB-BK RSE-ES"),
  metrik(get_est(df_s20, "y_eb_pct"),  df_s20$Estimasi,  "S20 EB-BK Cluster"),
  metrik(get_est(df_s21, "y_eb_pct"),  df_s21$Estimasi,  "S21 EB-TN All"),
  metrik(get_est(df_s22, "y_eb_pct"),  df_s22$Estimasi,  "S22 EB-TN RSE-NB"),
  metrik(get_est(df_s23, "y_eb_pct"),  df_s23$Estimasi,  "S23 EB-TN RSE-ES"),
  metrik(get_est(df_s24, "y_eb_pct"),  df_s24$Estimasi,  "S24 EB-TN Cluster"),
  metrik(get_est(df_s25, "y_hb_pct"),  df_s25$Estimasi,  "S25 HB-BK All"),
  metrik(get_est(df_s26, "y_hb_pct"),  df_s26$Estimasi,  "S26 HB-BK RSE-NB"),
  metrik(get_est(df_s27, "y_hb_pct"),  df_s27$Estimasi,  "S27 HB-BK RSE-ES"),
  metrik(get_est(df_s28, "y_hb_pct"),  df_s28$Estimasi,  "S28 HB-BK Cluster"),
  metrik(get_est(df_s29, "y_hb_pct"),  df_s29$Estimasi,  "S29 HB-TN All"),
  metrik(get_est(df_s30, "y_hb_pct"),  df_s30$Estimasi,  "S30 HB-TN RSE-NB"),
  metrik(get_est(df_s31, "y_hb_pct"),  df_s31$Estimasi,  "S31 HB-TN RSE-ES"),
  metrik(get_est(df_s32, "y_hb_pct"),  df_s32$Estimasi,  "S32 HB-TN Cluster")
)
tabel_metrik <- bind_rows(Filter(Negate(is.null), metrik_rows))

kable(tabel_metrik,
      caption = "Relative Bias (%) & RMSE terhadap Direct Estimator") %>%
  kable_styling(bootstrap_options = c("striped","hover","condensed","bordered"),
                full_width = FALSE, font_size = 12) %>%
  row_spec(which(abs(tabel_metrik$`RB (%)`) == min(abs(tabel_metrik$`RB (%)`), na.rm=TRUE)),
           bold = TRUE, background = "#d4edda")
Relative Bias (%) & RMSE terhadap Direct Estimator
Skenario RB (%) RMSE
S01 EBLUP-BK All -6.336 3.8559
S02 EBLUP-BK RSE-NB -11.100 4.1048
S03 EBLUP-BK RSE-ES -9.116 3.2683
S04 EBLUP-BK Cluster -6.150 3.6493
S05 EBLUP-TN All -5.870 3.7863
S06 EBLUP-TN RSE-NB -10.974 4.0329
S07 EBLUP-TN RSE-ES -8.461 3.1051
S08 EBLUP-TN Cluster -6.284 3.4471
S09 GLMM-BK All 11.118 2.4846
S10 GLMM-BK RSE-NB 4.191 3.6762
S11 GLMM-BK RSE-ES 6.220 2.8721
S12 GLMM-BK Cluster 9.401 2.9225
S13 GLMM-TN All 11.320 2.5729
S14 GLMM-TN RSE-NB 4.400 3.7664
S15 GLMM-TN RSE-ES 7.038 3.0583
S16 GLMM-TN Cluster 10.842 3.2166
S17 EB-BK All 2.070 1.9740
S18 EB-BK RSE-NB 0.581 2.0928
S19 EB-BK RSE-ES 0.754 1.7348
S20 EB-BK Cluster 2.910 2.0358
S21 EB-TN All 2.162 1.9689
S22 EB-TN RSE-NB 0.586 2.0865
S23 EB-TN RSE-ES 0.903 1.7279
S24 EB-TN Cluster 3.135 2.1364
S25 HB-BK All 62.291 2.1717
S26 HB-BK RSE-NB 23.031 0.6044
S27 HB-BK RSE-ES 64.998 1.2007
S28 HB-BK Cluster 25.118 1.3695
S29 HB-TN All 70.966 2.1041
S30 HB-TN RSE-NB 23.031 0.6044
S31 HB-TN RSE-ES 61.875 1.1923
S32 HB-TN Cluster 24.808 0.6399

Barplot % Domain RSE < 25%

direct_pct <- pct_ok(df_base$RSE_direct_col)

plot_df <- tabel_eval %>%
  filter(Skenario != "0. Direct") %>%
  mutate(
    pct_25    = `% < 25%`,                        # << nama persis dari debug
    Model     = case_when(
      grepl("EBLUP", Skenario)        ~ "EBLUP",
      grepl("GLMM",  Skenario)        ~ "GLMM",
      grepl("EB-BK|EB-TN", Skenario)  ~ "EB Beta",
      grepl("HB-BK|HB-TN", Skenario)  ~ "HB Beta",
      TRUE                             ~ "Lain"
    ),
    AuxMetode = ifelse(grepl("-BK", Skenario), "Backward", "Top-n/10"),
    Skenario  = factor(Skenario, levels = rev(unique(Skenario)))
  )

ggplot(plot_df, aes(x = Skenario, y = pct_25, fill = Model, alpha = AuxMetode)) +
  geom_col(width = 0.72) +
  geom_text(aes(label = paste0(pct_25, "%")),
            hjust = -0.12, size = 3, fontface = "bold") +
  geom_vline(xintercept = direct_pct,
             linetype = "dashed", color = "#c0392b", linewidth = 0.9) +
  scale_fill_manual(values = c(
    "EBLUP"   = "#2980b9", "GLMM"    = "#8e44ad",
    "EB Beta" = "#e67e22", "HB Beta" = "#27ae60"
  )) +
  scale_alpha_manual(values = c("Backward" = 1, "Top-n/10" = 0.65)) +
  scale_y_continuous(limits = c(0, 115), expand = c(0, 0)) +
  coord_flip() +
  labs(title    = "% Domain RSE < 25% — 32 Skenario SAE",
       subtitle = "Garis merah = baseline Direct | Gelap = Backward, Terang = Top-n/10",
       x = NULL, y = "% Domain RSE < 25%", fill = "Model", alpha = "Seleksi Aux") +
  theme_minimal(base_size = 11) +
  theme(legend.position = "top", plot.title = element_text(face = "bold", size = 13),
        panel.grid.major.y = element_blank())

Scatter RSE Direct vs Model (Facet 32)

make_scatter_df <- function(df, y_col, rse_col, label) {
  if (is.null(df) || !all(c(y_col, rse_col, "RSE_direct") %in% names(df))) return(NULL)
  df %>%
    mutate(RSE_model = .data[[rse_col]], Skenario = label) %>%
    dplyr::select(Kako, RSE_direct, RSE_model, Skenario)   # << RSE_direct bukan RSE_direct_col
}

scatter_list <- list(
  make_scatter_df(df_s1,  "y_eblup",  "RSE_eblup", "S01 EBLUP-BK All"),
  make_scatter_df(df_s2,  "y_eblup",  "RSE_eblup", "S02 EBLUP-BK RSE-NB"),
  make_scatter_df(df_s3,  "y_eblup",  "RSE_eblup", "S03 EBLUP-BK RSE-ES"),
  make_scatter_df(df_s4,  "y_eblup",  "RSE_eblup", "S04 EBLUP-BK Clust"),
  make_scatter_df(df_s5,  "y_eblup",  "RSE_eblup", "S05 EBLUP-TN All"),
  make_scatter_df(df_s6,  "y_eblup",  "RSE_eblup", "S06 EBLUP-TN RSE-NB"),
  make_scatter_df(df_s7,  "y_eblup",  "RSE_eblup", "S07 EBLUP-TN RSE-ES"),
  make_scatter_df(df_s8,  "y_eblup",  "RSE_eblup", "S08 EBLUP-TN Clust"),
  make_scatter_df(df_s9,  "y_glmm",   "RSE_glmm",  "S09 GLMM-BK All"),
  make_scatter_df(df_s10, "y_glmm",   "RSE_glmm",  "S10 GLMM-BK RSE-NB"),
  make_scatter_df(df_s11, "y_glmm",   "RSE_glmm",  "S11 GLMM-BK RSE-ES"),
  make_scatter_df(df_s12, "y_glmm",   "RSE_glmm",  "S12 GLMM-BK Clust"),
  make_scatter_df(df_s13, "y_glmm",   "RSE_glmm",  "S13 GLMM-TN All"),
  make_scatter_df(df_s14, "y_glmm",   "RSE_glmm",  "S14 GLMM-TN RSE-NB"),
  make_scatter_df(df_s15, "y_glmm",   "RSE_glmm",  "S15 GLMM-TN RSE-ES"),
  make_scatter_df(df_s16, "y_glmm",   "RSE_glmm",  "S16 GLMM-TN Clust"),
  make_scatter_df(df_s17, "y_eb_pct", "RSE_eb",    "S17 EB-BK All"),
  make_scatter_df(df_s18, "y_eb_pct", "RSE_eb",    "S18 EB-BK RSE-NB"),
  make_scatter_df(df_s19, "y_eb_pct", "RSE_eb",    "S19 EB-BK RSE-ES"),
  make_scatter_df(df_s20, "y_eb_pct", "RSE_eb",    "S20 EB-BK Clust"),
  make_scatter_df(df_s21, "y_eb_pct", "RSE_eb",    "S21 EB-TN All"),
  make_scatter_df(df_s22, "y_eb_pct", "RSE_eb",    "S22 EB-TN RSE-NB"),
  make_scatter_df(df_s23, "y_eb_pct", "RSE_eb",    "S23 EB-TN RSE-ES"),
  make_scatter_df(df_s24, "y_eb_pct", "RSE_eb",    "S24 EB-TN Clust"),
  make_scatter_df(df_s25, "y_hb_pct", "RSE_hb",    "S25 HB-BK All"),
  make_scatter_df(df_s26, "y_hb_pct", "RSE_hb",    "S26 HB-BK RSE-NB"),
  make_scatter_df(df_s27, "y_hb_pct", "RSE_hb",    "S27 HB-BK RSE-ES"),
  make_scatter_df(df_s28, "y_hb_pct", "RSE_hb",    "S28 HB-BK Clust"),
  make_scatter_df(df_s29, "y_hb_pct", "RSE_hb",    "S29 HB-TN All"),
  make_scatter_df(df_s30, "y_hb_pct", "RSE_hb",    "S30 HB-TN RSE-NB"),
  make_scatter_df(df_s31, "y_hb_pct", "RSE_hb",    "S31 HB-TN RSE-ES"),
  make_scatter_df(df_s32, "y_hb_pct", "RSE_hb",    "S32 HB-TN Clust")
)

df_scatter <- bind_rows(Filter(Negate(is.null), scatter_list)) %>%
  filter(!is.na(RSE_direct) & !is.na(RSE_model))

lim_max <- quantile(c(df_scatter$RSE_direct, df_scatter$RSE_model), 0.99, na.rm = TRUE)

ggplot(df_scatter, aes(x = RSE_direct, y = RSE_model)) +
  geom_point(alpha = 0.5, size = 1.3, color = "#2980b9") +
  geom_abline(slope = 1, intercept = 0, linetype = "dashed", color = "#c0392b") +
  geom_hline(yintercept = 25, linetype = "dotted", color = "#e67e22") +
  geom_vline(xintercept = 25, linetype = "dotted", color = "#e67e22") +
  facet_wrap(~ Skenario, ncol = 4, scales = "free") +
  coord_cartesian(xlim = c(0, lim_max), ylim = c(0, lim_max)) +
  labs(title    = "RSE Direct vs RSE Model — 32 Skenario SAE",
       subtitle = "Di bawah diagonal merah = lebih presisi dari direct",
       x = "RSE Direct (%)", y = "RSE Model (%)") +
  theme_minimal(base_size = 9) +
  theme(strip.text = element_text(face = "bold", size = 7),
        plot.title = element_text(face = "bold"))

Heatmap Ringkasan

heat_df <- tabel_eval %>%
  filter(Skenario != "0. Direct") %>%
  mutate(
    pct_25   = `% < 25%`,                        # << nama persis
    Model    = case_when(
      grepl("EBLUP", Skenario)        ~ "EBLUP",
      grepl("GLMM",  Skenario)        ~ "GLMM",
      grepl("EB-BK|EB-TN", Skenario)  ~ "EB-Beta",
      TRUE                             ~ "HB-Beta"
    ),
    AuxMetode = ifelse(grepl("-BK", Skenario), "Backward", "Top-n/10"),
    Partisi   = case_when(
      grepl("All",    Skenario) ~ "All",
      grepl("RSE-NB", Skenario) ~ "RSE-NB",
      grepl("RSE-ES", Skenario) ~ "RSE-ES",
      TRUE                      ~ "Cluster"
    ),
    Partisi   = factor(Partisi,   levels = c("All","RSE-NB","RSE-ES","Cluster")),
    Model     = factor(Model,     levels = c("EBLUP","GLMM","EB-Beta","HB-Beta")),
    AuxMetode = factor(AuxMetode, levels = c("Backward","Top-n/10"))
  )

ggplot(heat_df, aes(x = Partisi, y = Model, fill = pct_25)) +
  geom_tile(color = "white", linewidth = 0.8) +
  geom_text(aes(label = paste0(pct_25, "%")), size = 4, fontface = "bold") +
  facet_wrap(~ AuxMetode, ncol = 2) +
  scale_fill_gradient2(low = "#e74c3c", mid = "#f39c12", high = "#27ae60",
                       midpoint = 60, name = "% Domain\nRSE < 25%") +
  labs(title = "Heatmap Performa — % Domain RSE < 25%",
       subtitle = "Kiri = Backward | Kanan = Top-n/10",
       x = "Partisi", y = "Model") +
  theme_minimal(base_size = 12) +
  theme(plot.title = element_text(face = "bold"),
        strip.text = element_text(face = "bold", size = 12),
        axis.text  = element_text(size = 11))


10. Ringkasan & Kesimpulan

best_rse <- tabel_eval %>%
  filter(Skenario != "0. Direct") %>%
  mutate(pct_25 = `% < 25%`) %>%            # << tarik dulu
  slice_max(pct_25, n = 3, with_ties = FALSE)

best_rb <- tabel_metrik %>%
  slice_min(abs(`RB (%)`), n = 3, with_ties = FALSE)

cat("=== Top 3 Model (% domain RSE < 25%) ===\n")
## === Top 3 Model (% domain RSE < 25%) ===
print(best_rse[, c("Skenario", "pct_25", "% < 15%", "CV Mean")])
##             Skenario pct_25 % < 15% CV Mean
## 1 S10 GLMM-BK RSE-NB   85.2    84.0   11.59
## 2 S14 GLMM-TN RSE-NB   85.2    82.7   11.36
## 3 S11 GLMM-BK RSE-ES   84.0    70.4   19.76
cat("\n=== Top 3 Model (Relative Bias terkecil) ===\n")
## 
## === Top 3 Model (Relative Bias terkecil) ===
print(best_rb[, c("Skenario", "RB (%)", "RMSE")])
##           Skenario RB (%)  RMSE
## 1 S18 EB-BK RSE-NB  0.581 2.093
## 2 S22 EB-TN RSE-NB  0.586 2.087
## 3 S19 EB-BK RSE-ES  0.754 1.735

Panduan interpretasi 32 skenario:

  1. Seleksi Aux (Backward vs Top-n/10): Backward lebih selektif (stepAIC membuang variabel non-signifikan); Top-n/10 mempertahankan variabel dengan korelasi tertinggi. Keduanya menggunakan floor(n_partisi/10) variabel awal dari pre-filter korelasi.

  2. EBLUP (Normal): Baseline kuat untuk domain tidak terlalu ekstrim proporsinya. Rentan estimasi negatif jika proporsi mendekati 0.

  3. GLMM (Logit, glmmTMB): Menangani bounded response [0,1] lebih proper. Random intercept per domain memberi shrinkage empiris. MSE dari Jackknife leave-one-domain-out.

  4. EB Beta-Binomial: Analytical — cepat dan tidak perlu MCMC. Prior mean domain-spesifik dari regresi logit. Posterior variance analytik dari distribusi Beta konjugat.

  5. HB Beta (saeHB/JAGS): Paling proper secara Bayesian. Memanfaatkan full posterior distribution. Plot posterior dengan 95% CI memperlihatkan ketidakpastian per domain.

  6. Partisi RSE-NB vs RSE-ES: Natural Break (Jenks) memisahkan berdasarkan gap alami distribusi RSE; Equal Size memastikan kedua grup seimbang. RSE-NB lebih heterogen antar grup, RSE-ES lebih stabil dalam estimasi.

  7. Cluster-Aux: Variabel clustering berbeda per kombinasi (Aux method, Link function), membuat cluster lebih relevan secara statistik untuk masing-masing model.


Dianalisis dengan R. Seluruh 32 skenario merupakan kombinasi dari 2 metode seleksi aux × 4 model × 4 partisi.