Joggle and Wave 3 Neuropsych PCA Analyses

Initial Extraction of the Components

Jogglew03NeupsyPCA<-principal(Jogglew03Neupsy,nfactors=21,rotate="none")
principal(r=Jogglew03Neupsy,nfactors=21,rotate="none")

Eigen Values

ev <- eigen(cor(Jogglew03Neupsy))
ev

Scree Plot

ap <- parallel(subject=nrow(Jogglew03Neupsy),var=ncol(Jogglew03Neupsy), rep=100,cent=.05)
nS <- nScree(x=ev$values, aparallel=ap$eigen$qevpea)
plotnScree(nS)

plot of chunk unnamed-chunk-4

Rotation to Final Solution

Jogglew03NeupsyPCA.r<-principal(Jogglew03Neupsy,nfactors=4,rotate="varimax",scores=T)
principal(r=Jogglew03Neupsy,nfactors=4,rotate="varimax",scores=T)
## Principal Components Analysis
## Call: principal(r = Jogglew03Neupsy, nfactors = 4, rotate = "varimax", 
##     scores = T)
## Standardized loadings (pattern matrix) based upon correlation matrix
##                   RC2   RC3   RC4   RC1   h2    u2
## BARTaccuracy3    0.06  0.38 -0.02  0.27 0.22 0.776
## DSSTefficiency3  0.22  0.19  0.42  0.62 0.64 0.361
## LOTefficiency3   0.19  0.17  0.54  0.38 0.50 0.497
## PVTefficiency3   0.24  0.05  0.59  0.12 0.42 0.576
## AMefficiency3    0.12  0.37 -0.27  0.60 0.59 0.409
## NBACKaccuracy3   0.11 -0.07  0.02  0.29 0.10 0.900
## VOLTefficiency3 -0.02  0.13  0.13  0.76 0.61 0.394
## MPTspeed3        0.01  0.32  0.51  0.36 0.49 0.511
## BVRtot3         -0.37 -0.14 -0.66 -0.06 0.59 0.405
## StroopColors3    0.48  0.14  0.29  0.39 0.48 0.517
## StroopWords3     0.57  0.08  0.19  0.23 0.42 0.583
## StroopMixed3     0.58  0.12  0.20  0.32 0.50 0.503
## CVLtca3          0.41  0.34  0.11  0.24 0.36 0.644
## DigitSpanFwd3    0.69  0.02 -0.05  0.05 0.49 0.512
## DigitSpanBck3    0.80  0.14  0.06 -0.15 0.68 0.316
## FluencyWord3     0.35  0.08  0.20  0.24 0.22 0.776
## TrailsAtestSec3 -0.19 -0.32 -0.44 -0.37 0.47 0.534
## TrailsBtestSec3 -0.19 -0.91 -0.27 -0.03 0.94 0.058
## TrailsBminusA3  -0.18 -0.92 -0.23  0.00 0.93 0.071
## Attention3       0.50  0.23  0.33  0.07 0.42 0.582
## ClockTotal3     -0.03  0.01  0.44 -0.08 0.21 0.794
## 
##                        RC2  RC3  RC4  RC1
## SS loadings           2.97 2.50 2.45 2.36
## Proportion Var        0.14 0.12 0.12 0.11
## Cumulative Var        0.14 0.26 0.38 0.49
## Proportion Explained  0.29 0.24 0.24 0.23
## Cumulative Proportion 0.29 0.53 0.77 1.00
## 
## Test of the hypothesis that 4 components are sufficient.
## 
## The degrees of freedom for the null model are  210  and the objective function was  NaN
## The degrees of freedom for the model are 132  and the objective function was  NaN 
## The total number of observations was  293  with MLE Chi Square =  NaN  with prob <  NaN 
## 
## Fit based upon off diagonal values = 0.94