Species-Area Relationship

Equilibrium Theory of Island Biogeography

Background

What is it about?

  • What is an island?
  • What is the expectation?
  • Why does it matter?
    • theoretical interest (what determines diversity?)
    • conservation (habitat fragmentation…)
  • How does it come about?

Explanations put forward

  • Habitat diversity: greater in larger islands
  • Equilibrium Theory of Island Biogeography:
    • colonisation vs. extinction events
    • speciation events
  • Simple sampling effect (think quadrats of different sizes)

The Class Exercise: Stone Turning

Working in pairs, you will

  • turn over stones,
  • count the number of species present, and
  • record the size of the stone.

Do you need to identify the species present?

Planning a Field Study

Be clear about the analysis before you start collecting data.

  • What is my independent variable (predictor), \(x\)?
  • What is my dependent variable (outcome), \(y\)?

What kind of variable? - and how will I test \(y\sim x\)?

Sampling Considerations

“Random sampling” and “avoiding bias” is drilled into you.

  • What are you sampling here (what’s your ‘unit of replication’)?
  • Is random sampling appropriate for this study?

The (in)famous Normal Distribution

  • What will happen if you sample stones at random?
  • Why is this bad?

Because of this…

You want this

Preview: Analysis

What is the task ahead?

  • Plot the data / relationship
  • Formal test: is there evidence for our hypothesis?
  • [What fits best?]

Shape of the relationship?

Beyond “it’s correlated,” what do we expect the relationship to look like?

  • linear? — \(y \sim x\)
  • log-linear (exponential)? — \(y \sim \log x\)
  • log-log linear (power function)? — \(\log y \sim \log x\)
  • sigmoidal?

Most common assumption

Number of species \(S\) follows a power relationship with area \(A\):

\[S = cA^z\]

which would give a straight line in a log-log plot:

\[\log S = \log c + \log A^z\]

\[\log S = \log c + z\times\log A\]

Sample distribution of areas (\(X\))

# calculate new column for stone area = width * length
SpA.data$area <- with(SpA.data, width.cm*length.cm)