#install.packages("ggplot2")
#install.packages('ggrepel')
#install.packages('ggthemes')
#install.packages('scales')
#install.packages('plotly')
#install.packages('lattice')
#install.packages('GGally')
#install.packages("tidyverse")
#install.packages('ggtext')
#install.packages("glue")
#install.packages("gapminder")
#install.packages("dplyr")
library(ggplot2) #visualization
library(ggrepel) #labels for data
library(ggthemes) #collections of themes
library(scales) # scale
library(plotly) # interactive chart
library(GGally) # correlation
library(tidyverse) # mega package containing 8 packages
library(ggtext) # for text visualization
library(glue) # combining multiple component
library(gapminder)
library(dplyr)Data Visualization - principles
Table of contents
Overview Expected Learning Outcomes
After taking this workshop, participants should be able to do following:
Explain the concept of the grammar of graphics when visualizing data with the ggplot2 package.
Be familiar with various types of charts.
Visualize data in counts and proportions.
Select appropriate charts based on strategic considerations (e.g., the characteristics of the data and audience).
Create a chart that involves one or two variables with either categorical or continuous data.
Create a chart by adding a categorical moderator (3rd variable) to the chart involving two or three variables.
Create correlation charts.
Read charts and generate insights.
Describe three popular packages that allow one to visualize data.
Explain the concept of the grammar of graphics when visualizing data with the ggplot2 package.
Introduction
Library and Packages
Understand mtcars data
Using help
1. Understand mtcars data
1.1 Using Help
?mtcars
A data frame with 32 observations on 11 (numeric) variables.
[, 1] mpg Miles/(US) gallon
[, 2] cyl Number of cylinders
[, 3] disp Displacement (cu.in.)
[, 4] hp Gross horsepower
[, 5] drat Rear axle ratio
[, 6] wt Weight (1000 lbs)
[, 7] qsec 1/4 mile time
[, 8] vs Engine (0 = V-shaped, 1 = straight)
[, 9] am Transmission (0 = automatic, 1 = manual)
[,10] gear Number of forward gears
[,11] carb Number of carburetors Note]
1.2 Reading data and converting to a tibble (cars)
head(mtcars) mpg cyl disp hp drat wt qsec vs am gear carb
Mazda RX4 21.0 6 160 110 3.90 2.620 16.46 0 1 4 4
Mazda RX4 Wag 21.0 6 160 110 3.90 2.875 17.02 0 1 4 4
Datsun 710 22.8 4 108 93 3.85 2.320 18.61 1 1 4 1
Hornet 4 Drive 21.4 6 258 110 3.08 3.215 19.44 1 0 3 1
Hornet Sportabout 18.7 8 360 175 3.15 3.440 17.02 0 0 3 2
Valiant 18.1 6 225 105 2.76 3.460 20.22 1 0 3 1
cars <-
mtcars |> # piping operator from dplyr (shortcut: Ctrl+Shift+M)
rownames_to_column() %>% # do this before changing the data to tibble as the conversion will remove rownames in tibble.
as_tibble() |>
rename(model = rowname) |>
print (n = 20, width = Inf)# A tibble: 32 × 12
model mpg cyl disp hp drat wt qsec vs am
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Mazda RX4 21 6 160 110 3.9 2.62 16.5 0 1
2 Mazda RX4 Wag 21 6 160 110 3.9 2.88 17.0 0 1
3 Datsun 710 22.8 4 108 93 3.85 2.32 18.6 1 1
4 Hornet 4 Drive 21.4 6 258 110 3.08 3.22 19.4 1 0
5 Hornet Sportabout 18.7 8 360 175 3.15 3.44 17.0 0 0
6 Valiant 18.1 6 225 105 2.76 3.46 20.2 1 0
7 Duster 360 14.3 8 360 245 3.21 3.57 15.8 0 0
8 Merc 240D 24.4 4 147. 62 3.69 3.19 20 1 0
9 Merc 230 22.8 4 141. 95 3.92 3.15 22.9 1 0
10 Merc 280 19.2 6 168. 123 3.92 3.44 18.3 1 0
11 Merc 280C 17.8 6 168. 123 3.92 3.44 18.9 1 0
12 Merc 450SE 16.4 8 276. 180 3.07 4.07 17.4 0 0
13 Merc 450SL 17.3 8 276. 180 3.07 3.73 17.6 0 0
14 Merc 450SLC 15.2 8 276. 180 3.07 3.78 18 0 0
15 Cadillac Fleetwood 10.4 8 472 205 2.93 5.25 18.0 0 0
16 Lincoln Continental 10.4 8 460 215 3 5.42 17.8 0 0
17 Chrysler Imperial 14.7 8 440 230 3.23 5.34 17.4 0 0
18 Fiat 128 32.4 4 78.7 66 4.08 2.2 19.5 1 1
19 Honda Civic 30.4 4 75.7 52 4.93 1.62 18.5 1 1
20 Toyota Corolla 33.9 4 71.1 65 4.22 1.84 19.9 1 1
gear carb
<dbl> <dbl>
1 4 4
2 4 4
3 4 1
4 3 1
5 3 2
6 3 1
7 3 4
8 4 2
9 4 2
10 4 4
11 4 4
12 3 3
13 3 3
14 3 3
15 3 4
16 3 4
17 3 4
18 4 1
19 4 2
20 4 1
# ℹ 12 more rows
class(mtcars)[1] "data.frame"
mtcars mpg cyl disp hp drat wt qsec vs am gear carb
Mazda RX4 21.0 6 160.0 110 3.90 2.620 16.46 0 1 4 4
Mazda RX4 Wag 21.0 6 160.0 110 3.90 2.875 17.02 0 1 4 4
Datsun 710 22.8 4 108.0 93 3.85 2.320 18.61 1 1 4 1
Hornet 4 Drive 21.4 6 258.0 110 3.08 3.215 19.44 1 0 3 1
Hornet Sportabout 18.7 8 360.0 175 3.15 3.440 17.02 0 0 3 2
Valiant 18.1 6 225.0 105 2.76 3.460 20.22 1 0 3 1
Duster 360 14.3 8 360.0 245 3.21 3.570 15.84 0 0 3 4
Merc 240D 24.4 4 146.7 62 3.69 3.190 20.00 1 0 4 2
Merc 230 22.8 4 140.8 95 3.92 3.150 22.90 1 0 4 2
Merc 280 19.2 6 167.6 123 3.92 3.440 18.30 1 0 4 4
Merc 280C 17.8 6 167.6 123 3.92 3.440 18.90 1 0 4 4
Merc 450SE 16.4 8 275.8 180 3.07 4.070 17.40 0 0 3 3
Merc 450SL 17.3 8 275.8 180 3.07 3.730 17.60 0 0 3 3
Merc 450SLC 15.2 8 275.8 180 3.07 3.780 18.00 0 0 3 3
Cadillac Fleetwood 10.4 8 472.0 205 2.93 5.250 17.98 0 0 3 4
Lincoln Continental 10.4 8 460.0 215 3.00 5.424 17.82 0 0 3 4
Chrysler Imperial 14.7 8 440.0 230 3.23 5.345 17.42 0 0 3 4
Fiat 128 32.4 4 78.7 66 4.08 2.200 19.47 1 1 4 1
Honda Civic 30.4 4 75.7 52 4.93 1.615 18.52 1 1 4 2
Toyota Corolla 33.9 4 71.1 65 4.22 1.835 19.90 1 1 4 1
Toyota Corona 21.5 4 120.1 97 3.70 2.465 20.01 1 0 3 1
Dodge Challenger 15.5 8 318.0 150 2.76 3.520 16.87 0 0 3 2
AMC Javelin 15.2 8 304.0 150 3.15 3.435 17.30 0 0 3 2
Camaro Z28 13.3 8 350.0 245 3.73 3.840 15.41 0 0 3 4
Pontiac Firebird 19.2 8 400.0 175 3.08 3.845 17.05 0 0 3 2
Fiat X1-9 27.3 4 79.0 66 4.08 1.935 18.90 1 1 4 1
Porsche 914-2 26.0 4 120.3 91 4.43 2.140 16.70 0 1 5 2
Lotus Europa 30.4 4 95.1 113 3.77 1.513 16.90 1 1 5 2
Ford Pantera L 15.8 8 351.0 264 4.22 3.170 14.50 0 1 5 4
Ferrari Dino 19.7 6 145.0 175 3.62 2.770 15.50 0 1 5 6
Maserati Bora 15.0 8 301.0 335 3.54 3.570 14.60 0 1 5 8
Volvo 142E 21.4 4 121.0 109 4.11 2.780 18.60 1 1 4 2
# A tibble: 32 × 12
model mpg cyl disp hp drat wt qsec vs am
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Mazda RX4 21 6 160 110 3.9 2.62 16.5 0 1
2 Mazda RX4 Wag 21 6 160 110 3.9 2.88 17.0 0 1
3 Datsun 710 22.8 4 108 93 3.85 2.32 18.6 1 1
4 Hornet 4 Drive 21.4 6 258 110 3.08 3.22 19.4 1 0
5 Hornet Sportabout 18.7 8 360 175 3.15 3.44 17.0 0 0
6 Valiant 18.1 6 225 105 2.76 3.46 20.2 1 0
7 Duster 360 14.3 8 360 245 3.21 3.57 15.8 0 0
8 Merc 240D 24.4 4 147. 62 3.69 3.19 20 1 0
9 Merc 230 22.8 4 141. 95 3.92 3.15 22.9 1 0
10 Merc 280 19.2 6 168. 123 3.92 3.44 18.3 1 0
11 Merc 280C 17.8 6 168. 123 3.92 3.44 18.9 1 0
12 Merc 450SE 16.4 8 276. 180 3.07 4.07 17.4 0 0
13 Merc 450SL 17.3 8 276. 180 3.07 3.73 17.6 0 0
14 Merc 450SLC 15.2 8 276. 180 3.07 3.78 18 0 0
15 Cadillac Fleetwood 10.4 8 472 205 2.93 5.25 18.0 0 0
16 Lincoln Continental 10.4 8 460 215 3 5.42 17.8 0 0
17 Chrysler Imperial 14.7 8 440 230 3.23 5.34 17.4 0 0
18 Fiat 128 32.4 4 78.7 66 4.08 2.2 19.5 1 1
19 Honda Civic 30.4 4 75.7 52 4.93 1.62 18.5 1 1
20 Toyota Corolla 33.9 4 71.1 65 4.22 1.84 19.9 1 1
gear carb
<dbl> <dbl>
1 4 4
2 4 4
3 4 1
4 3 1
5 3 2
6 3 1
7 3 4
8 4 2
9 4 2
10 4 4
11 4 4
12 3 3
13 3 3
14 3 3
15 3 4
16 3 4
17 3 4
18 4 1
19 4 2
20 4 1
# ℹ 12 more rows
mtcars |>
rownames_to_column() rowname mpg cyl disp hp drat wt qsec vs am gear carb
1 Mazda RX4 21.0 6 160.0 110 3.90 2.620 16.46 0 1 4 4
2 Mazda RX4 Wag 21.0 6 160.0 110 3.90 2.875 17.02 0 1 4 4
3 Datsun 710 22.8 4 108.0 93 3.85 2.320 18.61 1 1 4 1
4 Hornet 4 Drive 21.4 6 258.0 110 3.08 3.215 19.44 1 0 3 1
5 Hornet Sportabout 18.7 8 360.0 175 3.15 3.440 17.02 0 0 3 2
6 Valiant 18.1 6 225.0 105 2.76 3.460 20.22 1 0 3 1
7 Duster 360 14.3 8 360.0 245 3.21 3.570 15.84 0 0 3 4
8 Merc 240D 24.4 4 146.7 62 3.69 3.190 20.00 1 0 4 2
9 Merc 230 22.8 4 140.8 95 3.92 3.150 22.90 1 0 4 2
10 Merc 280 19.2 6 167.6 123 3.92 3.440 18.30 1 0 4 4
11 Merc 280C 17.8 6 167.6 123 3.92 3.440 18.90 1 0 4 4
12 Merc 450SE 16.4 8 275.8 180 3.07 4.070 17.40 0 0 3 3
13 Merc 450SL 17.3 8 275.8 180 3.07 3.730 17.60 0 0 3 3
14 Merc 450SLC 15.2 8 275.8 180 3.07 3.780 18.00 0 0 3 3
15 Cadillac Fleetwood 10.4 8 472.0 205 2.93 5.250 17.98 0 0 3 4
16 Lincoln Continental 10.4 8 460.0 215 3.00 5.424 17.82 0 0 3 4
17 Chrysler Imperial 14.7 8 440.0 230 3.23 5.345 17.42 0 0 3 4
18 Fiat 128 32.4 4 78.7 66 4.08 2.200 19.47 1 1 4 1
19 Honda Civic 30.4 4 75.7 52 4.93 1.615 18.52 1 1 4 2
20 Toyota Corolla 33.9 4 71.1 65 4.22 1.835 19.90 1 1 4 1
21 Toyota Corona 21.5 4 120.1 97 3.70 2.465 20.01 1 0 3 1
22 Dodge Challenger 15.5 8 318.0 150 2.76 3.520 16.87 0 0 3 2
23 AMC Javelin 15.2 8 304.0 150 3.15 3.435 17.30 0 0 3 2
24 Camaro Z28 13.3 8 350.0 245 3.73 3.840 15.41 0 0 3 4
25 Pontiac Firebird 19.2 8 400.0 175 3.08 3.845 17.05 0 0 3 2
26 Fiat X1-9 27.3 4 79.0 66 4.08 1.935 18.90 1 1 4 1
27 Porsche 914-2 26.0 4 120.3 91 4.43 2.140 16.70 0 1 5 2
28 Lotus Europa 30.4 4 95.1 113 3.77 1.513 16.90 1 1 5 2
29 Ford Pantera L 15.8 8 351.0 264 4.22 3.170 14.50 0 1 5 4
30 Ferrari Dino 19.7 6 145.0 175 3.62 2.770 15.50 0 1 5 6
31 Maserati Bora 15.0 8 301.0 335 3.54 3.570 14.60 0 1 5 8
32 Volvo 142E 21.4 4 121.0 109 4.11 2.780 18.60 1 1 4 2
cars# A tibble: 32 × 12
model mpg cyl disp hp drat wt qsec vs am gear carb
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Mazda RX4 21 6 160 110 3.9 2.62 16.5 0 1 4 4
2 Mazda RX4 … 21 6 160 110 3.9 2.88 17.0 0 1 4 4
3 Datsun 710 22.8 4 108 93 3.85 2.32 18.6 1 1 4 1
4 Hornet 4 D… 21.4 6 258 110 3.08 3.22 19.4 1 0 3 1
5 Hornet Spo… 18.7 8 360 175 3.15 3.44 17.0 0 0 3 2
6 Valiant 18.1 6 225 105 2.76 3.46 20.2 1 0 3 1
7 Duster 360 14.3 8 360 245 3.21 3.57 15.8 0 0 3 4
8 Merc 240D 24.4 4 147. 62 3.69 3.19 20 1 0 4 2
9 Merc 230 22.8 4 141. 95 3.92 3.15 22.9 1 0 4 2
10 Merc 280 19.2 6 168. 123 3.92 3.44 18.3 1 0 4 4
# ℹ 22 more rows
1.3 simple descriptive statistics
summary(cars) model mpg cyl disp
Length:32 Min. :10.40 Min. :4.000 Min. : 71.1
Class :character 1st Qu.:15.43 1st Qu.:4.000 1st Qu.:120.8
Mode :character Median :19.20 Median :6.000 Median :196.3
Mean :20.09 Mean :6.188 Mean :230.7
3rd Qu.:22.80 3rd Qu.:8.000 3rd Qu.:326.0
Max. :33.90 Max. :8.000 Max. :472.0
hp drat wt qsec
Min. : 52.0 Min. :2.760 Min. :1.513 Min. :14.50
1st Qu.: 96.5 1st Qu.:3.080 1st Qu.:2.581 1st Qu.:16.89
Median :123.0 Median :3.695 Median :3.325 Median :17.71
Mean :146.7 Mean :3.597 Mean :3.217 Mean :17.85
3rd Qu.:180.0 3rd Qu.:3.920 3rd Qu.:3.610 3rd Qu.:18.90
Max. :335.0 Max. :4.930 Max. :5.424 Max. :22.90
vs am gear carb
Min. :0.0000 Min. :0.0000 Min. :3.000 Min. :1.000
1st Qu.:0.0000 1st Qu.:0.0000 1st Qu.:3.000 1st Qu.:2.000
Median :0.0000 Median :0.0000 Median :4.000 Median :2.000
Mean :0.4375 Mean :0.4062 Mean :3.688 Mean :2.812
3rd Qu.:1.0000 3rd Qu.:1.0000 3rd Qu.:4.000 3rd Qu.:4.000
Max. :1.0000 Max. :1.0000 Max. :5.000 Max. :8.000
glimpse(cars)Rows: 32
Columns: 12
$ model <chr> "Mazda RX4", "Mazda RX4 Wag", "Datsun 710", "Hornet 4 Drive", "H…
$ mpg <dbl> 21.0, 21.0, 22.8, 21.4, 18.7, 18.1, 14.3, 24.4, 22.8, 19.2, 17.8…
$ cyl <dbl> 6, 6, 4, 6, 8, 6, 8, 4, 4, 6, 6, 8, 8, 8, 8, 8, 8, 4, 4, 4, 4, 8…
$ disp <dbl> 160.0, 160.0, 108.0, 258.0, 360.0, 225.0, 360.0, 146.7, 140.8, 1…
$ hp <dbl> 110, 110, 93, 110, 175, 105, 245, 62, 95, 123, 123, 180, 180, 18…
$ drat <dbl> 3.90, 3.90, 3.85, 3.08, 3.15, 2.76, 3.21, 3.69, 3.92, 3.92, 3.92…
$ wt <dbl> 2.620, 2.875, 2.320, 3.215, 3.440, 3.460, 3.570, 3.190, 3.150, 3…
$ qsec <dbl> 16.46, 17.02, 18.61, 19.44, 17.02, 20.22, 15.84, 20.00, 22.90, 1…
$ vs <dbl> 0, 0, 1, 1, 0, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0…
$ am <dbl> 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0…
$ gear <dbl> 4, 4, 4, 3, 3, 3, 3, 4, 4, 4, 4, 3, 3, 3, 3, 3, 3, 4, 4, 4, 3, 3…
$ carb <dbl> 4, 4, 1, 1, 2, 1, 4, 2, 2, 4, 4, 3, 3, 3, 4, 4, 4, 1, 2, 1, 1, 2…
skimr::skim(cars)| Name | cars |
| Number of rows | 32 |
| Number of columns | 12 |
| _______________________ | |
| Column type frequency: | |
| character | 1 |
| numeric | 11 |
| ________________________ | |
| Group variables | None |
Variable type: character
| skim_variable | n_missing | complete_rate | min | max | empty | n_unique | whitespace |
|---|---|---|---|---|---|---|---|
| model | 0 | 1 | 7 | 19 | 0 | 32 | 0 |
Variable type: numeric
| skim_variable | n_missing | complete_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|
| mpg | 0 | 1 | 20.09 | 6.03 | 10.40 | 15.43 | 19.20 | 22.80 | 33.90 | ▃▇▅▁▂ |
| cyl | 0 | 1 | 6.19 | 1.79 | 4.00 | 4.00 | 6.00 | 8.00 | 8.00 | ▆▁▃▁▇ |
| disp | 0 | 1 | 230.72 | 123.94 | 71.10 | 120.83 | 196.30 | 326.00 | 472.00 | ▇▃▃▃▂ |
| hp | 0 | 1 | 146.69 | 68.56 | 52.00 | 96.50 | 123.00 | 180.00 | 335.00 | ▇▇▆▃▁ |
| drat | 0 | 1 | 3.60 | 0.53 | 2.76 | 3.08 | 3.70 | 3.92 | 4.93 | ▇▃▇▅▁ |
| wt | 0 | 1 | 3.22 | 0.98 | 1.51 | 2.58 | 3.33 | 3.61 | 5.42 | ▃▃▇▁▂ |
| qsec | 0 | 1 | 17.85 | 1.79 | 14.50 | 16.89 | 17.71 | 18.90 | 22.90 | ▃▇▇▂▁ |
| vs | 0 | 1 | 0.44 | 0.50 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | ▇▁▁▁▆ |
| am | 0 | 1 | 0.41 | 0.50 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | ▇▁▁▁▆ |
| gear | 0 | 1 | 3.69 | 0.74 | 3.00 | 3.00 | 4.00 | 4.00 | 5.00 | ▇▁▆▁▂ |
| carb | 0 | 1 | 2.81 | 1.62 | 1.00 | 2.00 | 2.00 | 4.00 | 8.00 | ▇▂▅▁▁ |
2. Basic plottinf methods in base R
# Using built in plotting function
hist(cars$disp, breaks = 10)3. lattice package
4. GG plot 2
- we will use ggplot2 – the best tool in the market for data visualization – from now on.
4.1 Elaborate Examples
cars |>
count(cyl)# A tibble: 3 × 2
cyl n
<dbl> <int>
1 4 11
2 6 7
3 8 14
easy_labels <- c("4" = "4 Cylinder Cars",
"6" = "6 Cylinder Cars",
"8" = "8 Cylinder Cars"
)
cars %>%
mutate(cyl = factor(cyl)) %>%
ggplot(aes(x = mpg, y = disp, color = cyl)) +
geom_point(size=3,
color='black'
) + #geom
# geom_jitter() +
geom_smooth(method = lm, se = FALSE) +
# facet_grid(cols = vars(cyl),
facet_wrap(~ cyl,
#scales = "free_y",
ncol = 1,
strip.position = "top",
labeller = labeller(cyl = easy_labels)
) + #faceting
scale_y_continuous(limits = c(0, NA), expand= c(0,0)) +
coord_flip() + #coordinate
theme_economist() + #labels
labs(title = 'MPG vs Displacement',
x = 'Miles Per Gallon',
y = 'Displacement') +
theme(
strip.placement = "outside",
strip.background = element_blank(),
panel.background = element_blank(),
panel.grid = element_blank(),
axis.line = element_line()
) +
guides(color = 'none')4.1.2 x & y are both continuous with moderator & as_labeller()
easy_labels_n <- as_labeller(c(`4` = "4 Cylinder Cars",
`6` = "6 Cylinder Cars",
`8` = "8 Cylinder Cars"
)
)
ggplot(data = cars, aes(x = disp, y = mpg, color = factor(cyl))) + #data
geom_point(size=3) + #geometry
facet_grid(~ factor(cyl),
labeller = easy_labels_n
) + #faceting
theme_bw() + #theme type
labs(title = 'MPG vs Displacement', #labels
x = 'Displacement',
y = 'Miles Per Gallon',
color = "# of Cylender"
) +
guides(color = 'none')4.2. One continous variable: geom_histogram()
ggplot(data = cars, aes(mpg)) +
geom_histogram(binwidth = 5, color = "red", fill = "blue")ggplot(data = cars, aes(x = mpg, fill = mpg)) +
geom_histogram(binwidth = 3, color = "red", fill = "blue")