##Default assumption:
If HandlingTime_sec is not NA and > 0, it was a completed capture event.
##
## ---- Fish summary quick view ----
## # A tibble: 3 × 4
## Sp n_fish mean_attacks mean_consumed
## <fct> <int> <dbl> <dbl>
## 1 P. reticulata 11 23.3 11.4
## 2 P. harpagos 12 24.3 15.9
## 3 P. vivipara 12 20.4 19.7
Given 10 minutes and identical prey availability, do species differ in how many larvae they can convert into intake?
## Family: nbinom2 ( log )
## Formula: n_consumed_10min ~ Sp
## Data: fish_sum2
##
## AIC BIC logLik -2*log(L) df.resid
## 214.1 220.3 -103.0 206.1 31
##
##
## Dispersion parameter for nbinom2 family (): 396
##
## Conditional model:
## Estimate Std. Error z value Pr(>|z|)
## (Intercept) 2.43042 0.09072 26.792 < 2e-16 ***
## SpP. harpagos 0.33695 0.11694 2.881 0.00396 **
## SpP. vivipara 0.54851 0.11259 4.872 1.11e-06 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Species differed significantly in feeding efficiency, measured as the total number of larvae consumed during a 10-min assay (negative binomial GLM). Relative to P. reticulata, P. harpagos consumed approximately 40% more larvae (p = 0.004), whereas P. vivipara exhibited a substantially higher intake, consuming ~73% more larvae (p < 10⁻⁶). These results indicate a clear ranking in feeding efficiency among species, with P. vivipara outperforming both P. harpagos and P. reticulata under standardized prey availability.
Do species differ in how quickly they capture prey through time?
To answer this question, we fitted a Cox proportional hazards mixed-effects model (frailty model), including fish identity as a random effect, to test for species differences in prey-capture speed.
## Mixed effects coxme model
## Formula: Surv(event_sec) ~ Sp + (1 | ID)
## Data: cons_events
##
## events, n = 552, 552
##
## Random effects:
## group variable sd variance
## 1 ID Intercept 0.6180553 0.3819924
## Chisq df p AIC BIC
## Integrated loglik 244.5 3.00 0 238.5 225.6
## Penalized loglik 336.3 28.67 0 278.9 155.2
##
## Fixed effects:
## coef exp(coef) se(coef) z p
## SpP. harpagos -0.3027 0.7388 0.2875 -1.05 0.292
## SpP. vivipara 1.2977 3.6607 0.2884 4.50 6.82e-06
Species differed markedly in prey-capture speed through time. Event-time mixed-effects models revealed that P. vivipara captured prey at a substantially higher rate than P. reticulata, with an estimated 3.7-fold increase in instantaneous capture probability (hazard ratio = 3.66, p < 10⁻⁵). In contrast, prey-capture rates of P. harpagos did not differ significantly from those of P. reticulata (hazard ratio = 0.74, p = 0.29). These results indicate that species differences in feeding efficiency are driven primarily by pronounced differences in capture tempo, rather than by subtle variation among all taxa.