GEOquery

GEO

Gathering and cleaning data from GEO

The 4 steps that would need to be done without this package:

• Manually download data from the GEO website
• Parse complex SOFT format files
• Construct data structures suitable for analysis
• Integrate metadata with expression data

GEOquery

With GEOquery you can:

• quickly gather data from GEO
• navigate between R and the GEO website
• work in the dataset directly in R

GEOquery Demo

Thanks for listening