Module 13: Apply it to your data 12
Chapter 21 Iteration
Nick Sobalo
Import your data
data("mtcars")
mtcars <- as_tibble(mtcars)Repeat the same operation over different columns of a data frame
Case of numeric variables
mtcars %>% map_dbl(.x = ., .f = ~mean(x = .x))## mpg cyl disp hp drat wt qsec
## 20.090625 6.187500 230.721875 146.687500 3.596563 3.217250 17.848750
## vs am gear carb
## 0.437500 0.406250 3.687500 2.812500mtcars %>% map_dbl(.f = ~mean(x = .x))## mpg cyl disp hp drat wt qsec
## 20.090625 6.187500 230.721875 146.687500 3.596563 3.217250 17.848750
## vs am gear carb
## 0.437500 0.406250 3.687500 2.812500mtcars %>% map_dbl(mean)## mpg cyl disp hp drat wt qsec
## 20.090625 6.187500 230.721875 146.687500 3.596563 3.217250 17.848750
## vs am gear carb
## 0.437500 0.406250 3.687500 2.812500# Adding an argument
mtcars %>% map_dbl(.x = ., .f = ~mean(x = .x, trim = 0.1))## mpg cyl disp hp drat wt
## 19.6961538 6.2307692 222.5230769 141.1923077 3.5792308 3.1526923
## qsec vs am gear carb
## 17.8276923 0.4230769 0.3846154 3.6153846 2.6538462mtcars %>% map_dbl(mean, trim = 0.1)## mpg cyl disp hp drat wt
## 19.6961538 6.2307692 222.5230769 141.1923077 3.5792308 3.1526923
## qsec vs am gear carb
## 17.8276923 0.4230769 0.3846154 3.6153846 2.6538462mtcars %>% select(.data = ., mpg)## # A tibble: 32 × 1
## mpg
## <dbl>
## 1 21
## 2 21
## 3 22.8
## 4 21.4
## 5 18.7
## 6 18.1
## 7 14.3
## 8 24.4
## 9 22.8
## 10 19.2
## # ℹ 22 more rowsmtcars %>% select(mpg)## # A tibble: 32 × 1
## mpg
## <dbl>
## 1 21
## 2 21
## 3 22.8
## 4 21.4
## 5 18.7
## 6 18.1
## 7 14.3
## 8 24.4
## 9 22.8
## 10 19.2
## # ℹ 22 more rowsCreate your own function
# Double values in columns
double_by_factor <- function(x, factor) {x * factor}
10 %>% double_by_factor(factor = 2)## [1] 20mtcars %>% map_dfr(.x = ., .f = ~double_by_factor(x = .x, factor = 10))## # A tibble: 32 × 11
## mpg cyl disp hp drat wt qsec vs am gear carb
## <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
## 1 210 60 1600 1100 39 26.2 165. 0 10 40 40
## 2 210 60 1600 1100 39 28.8 170. 0 10 40 40
## 3 228 40 1080 930 38.5 23.2 186. 10 10 40 10
## 4 214 60 2580 1100 30.8 32.2 194. 10 0 30 10
## 5 187 80 3600 1750 31.5 34.4 170. 0 0 30 20
## 6 181 60 2250 1050 27.6 34.6 202. 10 0 30 10
## 7 143 80 3600 2450 32.1 35.7 158. 0 0 30 40
## 8 244 40 1467 620 36.9 31.9 200 10 0 40 20
## 9 228 40 1408 950 39.2 31.5 229 10 0 40 20
## 10 192 60 1676 1230 39.2 34.4 183 10 0 40 40
## # ℹ 22 more rowsmtcars %>% map_dfr(double_by_factor, factor = 10)## # A tibble: 32 × 11
## mpg cyl disp hp drat wt qsec vs am gear carb
## <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
## 1 210 60 1600 1100 39 26.2 165. 0 10 40 40
## 2 210 60 1600 1100 39 28.8 170. 0 10 40 40
## 3 228 40 1080 930 38.5 23.2 186. 10 10 40 10
## 4 214 60 2580 1100 30.8 32.2 194. 10 0 30 10
## 5 187 80 3600 1750 31.5 34.4 170. 0 0 30 20
## 6 181 60 2250 1050 27.6 34.6 202. 10 0 30 10
## 7 143 80 3600 2450 32.1 35.7 158. 0 0 30 40
## 8 244 40 1467 620 36.9 31.9 200 10 0 40 20
## 9 228 40 1408 950 39.2 31.5 229 10 0 40 20
## 10 192 60 1676 1230 39.2 34.4 183 10 0 40 40
## # ℹ 22 more rowsRepeat the same operation over different elements of a list
When you have a grouping variable (factor)
mtcars %>% lm(formula = mpg ~ wt, data = .)##
## Call:
## lm(formula = mpg ~ wt, data = .)
##
## Coefficients:
## (Intercept) wt
## 37.285 -5.344mtcars %>% distinct(cyl)## # A tibble: 3 × 1
## cyl
## <dbl>
## 1 6
## 2 4
## 3 8reg_coeff_tbl <- mtcars %>%
# Split it into a list of data frames
split(.$cyl) %>%
# Repeat regression over each group
map(~lm(formula = mpg ~ wt, data = .)) %>%
# Extract coefficients from regression results
map(broom::tidy, conf.int = TRUE) %>%
# Convert to tibble
bind_rows(.id = "cyl") %>%
# Filter for wt coefficients
filter(term == "wt")reg_coeff_tbl %>%
mutate(estimate = -estimate,
conf.low = -conf.low,
conf.high = -conf.high) %>%
ggplot(aes(x = estimate, y = cyl)) +
geom_point() +
geom_errorbar(aes(xmin = conf.low, xmax = conf.high))
Create your own
Choose either one of the two cases above and apply it to your data
dog <- read_excel("../01_module4/data/myData.xlsx")dog %>%
filter(Breed %>% str_detect("dogs"))## # A tibble: 8 × 18
## Column1 Breed Affectionate With Fa…¹ Good With Young Chil…²
## <dbl> <chr> <dbl> <dbl>
## 1 2 French Bulldogs 5 5
## 2 5 Bulldogs 4 3
## 3 27 Shetland Sheepdogs 5 5
## 4 68 Old English Sheepdogs 5 5
## 5 117 Belgian Sheepdogs 3 3
## 6 154 Icelandic Sheepdogs 5 5
## 7 173 Bergamasco Sheepdogs 3 3
## 8 175 Polish Lowland Sheepdogs 5 3
## # ℹ abbreviated names: ¹`Affectionate With Family`, ²`Good With Young Children`
## # ℹ 14 more variables: `Good With Other Dogs` <dbl>, `Shedding Level` <dbl>,
## # `Coat Grooming Frequency` <dbl>, `Drooling Level` <dbl>, Type <chr>,
## # Length <chr>, `Openness To Strangers` <dbl>, `Playfulness Level` <dbl>,
## # `Watchdog/Protective Nature` <dbl>, `Adaptability Level` <dbl>,
## # `Trainability Level` <dbl>, `Energy Level` <dbl>, `Barking Level` <dbl>,
## # `Mental Stimulation Needs` <dbl>filter_dog_breed <- function(.data, dog_name){
dogs_filtered <- .data %>%
filter(Breed %>% str_detect(dog_name))
return(dogs_filtered)
}
dog %>% filter_dog_breed(dog_name = c("Poodles"))## # A tibble: 1 × 18
## Column1 Breed `Affectionate With Family` `Good With Young Children`
## <dbl> <chr> <dbl> <dbl>
## 1 6 Poodles 5 5
## # ℹ 14 more variables: `Good With Other Dogs` <dbl>, `Shedding Level` <dbl>,
## # `Coat Grooming Frequency` <dbl>, `Drooling Level` <dbl>, Type <chr>,
## # Length <chr>, `Openness To Strangers` <dbl>, `Playfulness Level` <dbl>,
## # `Watchdog/Protective Nature` <dbl>, `Adaptability Level` <dbl>,
## # `Trainability Level` <dbl>, `Energy Level` <dbl>, `Barking Level` <dbl>,
## # `Mental Stimulation Needs` <dbl>dog %>% map_dbl(.x = ., .f = ~mean(x = .x))## Warning in mean.default(x = .x): argument is not numeric or logical: returning
## NA
## Warning in mean.default(x = .x): argument is not numeric or logical: returning
## NA
## Warning in mean.default(x = .x): argument is not numeric or logical: returning
## NA## Column1 Breed
## 98.000000 NA
## Affectionate With Family Good With Young Children
## 4.476923 3.866667
## Good With Other Dogs Shedding Level
## 3.512821 2.589744
## Coat Grooming Frequency Drooling Level
## 2.276923 1.789744
## Type Length
## NA NA
## Openness To Strangers Playfulness Level
## 3.466667 3.630769
## Watchdog/Protective Nature Adaptability Level
## 3.717949 3.774359
## Trainability Level Energy Level
## 3.846154 3.723077
## Barking Level Mental Stimulation Needs
## 3.117949 3.661538dog %>% map_dbl(.f = ~mean(x = .x))## Warning in mean.default(x = .x): argument is not numeric or logical: returning
## NA
## Warning in mean.default(x = .x): argument is not numeric or logical: returning
## NA
## Warning in mean.default(x = .x): argument is not numeric or logical: returning
## NA## Column1 Breed
## 98.000000 NA
## Affectionate With Family Good With Young Children
## 4.476923 3.866667
## Good With Other Dogs Shedding Level
## 3.512821 2.589744
## Coat Grooming Frequency Drooling Level
## 2.276923 1.789744
## Type Length
## NA NA
## Openness To Strangers Playfulness Level
## 3.466667 3.630769
## Watchdog/Protective Nature Adaptability Level
## 3.717949 3.774359
## Trainability Level Energy Level
## 3.846154 3.723077
## Barking Level Mental Stimulation Needs
## 3.117949 3.661538dog %>% map_dbl(mean)## Warning in mean.default(.x[[i]], ...): argument is not numeric or logical:
## returning NA## Warning in mean.default(.x[[i]], ...): argument is not numeric or logical:
## returning NA
## Warning in mean.default(.x[[i]], ...): argument is not numeric or logical:
## returning NA## Column1 Breed
## 98.000000 NA
## Affectionate With Family Good With Young Children
## 4.476923 3.866667
## Good With Other Dogs Shedding Level
## 3.512821 2.589744
## Coat Grooming Frequency Drooling Level
## 2.276923 1.789744
## Type Length
## NA NA
## Openness To Strangers Playfulness Level
## 3.466667 3.630769
## Watchdog/Protective Nature Adaptability Level
## 3.717949 3.774359
## Trainability Level Energy Level
## 3.846154 3.723077
## Barking Level Mental Stimulation Needs
## 3.117949 3.661538dog %>% map_dbl(.x = ., .f = ~mean(x = .x, trim = 0.1))## Warning in mean.default(x = .x, trim = 0.1): argument is not numeric or
## logical: returning NA## Warning in mean.default(x = .x, trim = 0.1): argument is not numeric or
## logical: returning NA
## Warning in mean.default(x = .x, trim = 0.1): argument is not numeric or
## logical: returning NA## Column1 Breed
## 98.000000 NA
## Affectionate With Family Good With Young Children
## 4.624204 3.866242
## Good With Other Dogs Shedding Level
## 3.484076 2.624204
## Coat Grooming Frequency Drooling Level
## 2.210191 1.649682
## Type Length
## NA NA
## Openness To Strangers Playfulness Level
## 3.452229 3.566879
## Watchdog/Protective Nature Adaptability Level
## 3.732484 3.738854
## Trainability Level Energy Level
## 3.872611 3.687898
## Barking Level Mental Stimulation Needs
## 3.152866 3.598726dog %>% map_dbl(mean, trim = 0.1)## Warning in mean.default(.x[[i]], ...): argument is not numeric or logical:
## returning NA## Warning in mean.default(.x[[i]], ...): argument is not numeric or logical:
## returning NA
## Warning in mean.default(.x[[i]], ...): argument is not numeric or logical:
## returning NA## Column1 Breed
## 98.000000 NA
## Affectionate With Family Good With Young Children
## 4.624204 3.866242
## Good With Other Dogs Shedding Level
## 3.484076 2.624204
## Coat Grooming Frequency Drooling Level
## 2.210191 1.649682
## Type Length
## NA NA
## Openness To Strangers Playfulness Level
## 3.452229 3.566879
## Watchdog/Protective Nature Adaptability Level
## 3.732484 3.738854
## Trainability Level Energy Level
## 3.872611 3.687898
## Barking Level Mental Stimulation Needs
## 3.152866 3.598726# Double value in columns
double_by_factor <- function(x, factor)
10 %>% double_by_factor(factor = 2)
# dog %>% map_dbl(double_by_factor, factor = 10)