Este cuaderno elaborado en R muestra de manera práctica cómo obtener datos sobre las propiedades del suelo —a distintas profundidades— desde la plataforma SoilGrids, desarrollada por el International Soil Reference and Information Centre (ISRIC). Estos datos se encuentran en formato raster con una resolución espacial de 250 metros, lo que permite representar de forma continua las características del suelo a escala global.
Una de las principales ventajas de realizar esta descarga mediante R es la automatización y reproducibilidad del proceso. A diferencia del método manual a través de un navegador web, el uso de R permite:
Definir con precisión el área de interés (por ejemplo, un departamento o municipio).
Descargar únicamente las capas y variables requeridas, evitando archivos innecesarios.
Integrar los datos directamente en flujos de trabajo analíticos, sin pasos intermedios.
Repetir el procedimiento fácilmente para diferentes regiones o variables, garantizando consistencia entre análisis.
En el cuaderno de referencia del profesor Iván Lizarazo (2025), se describen tres alternativas principales para acceder a los datos de SoilGrids:
Web Mapping Service (WMS): orientado a la visualización rápida de mapas en línea.
Web Coverage Service (WCS): diseñado para descargar subconjuntos específicos de mapas y usarlos en modelos o análisis espaciales.
WebDAV: la opción más flexible para obtener archivos completos en formato VRT o GeoTIFF, ideal para procesamiento local en R.
En este documento se utiliza la opción WebDAV, por ser la más adecuada para descargar y procesar grandes volúmenes de información de manera programática y eficiente dentro del entorno de RStudio.
En primer lugar vamos a limpiar nuestro espacio de trabajo.
rm(list=ls())
SoilGrids puede accederse desde R a través de los siguientes servicios proporcionados por el Centro Internacional de Referencia e Información de Suelos (ISRIC) [https://www.isric.org/explore/soilgrids]:
Web Mapping Service (WMS): permite el acceso para la visualización y exploración general de los mapas.
Web Coverage Service (WCS): es la mejor opción para obtener un subconjunto de un mapa y utilizar los datos de SoilGrids como entrada en otros modelos o análisis.
Web Distributed Authoring and Versioning (WebDAV): posibilita descargar los mapas globales completos en formato VRT para su uso local.
En este cuaderno utilizaremos el servicio WebDAV, por ser el más adecuado para descargar y procesar los datos directamente desde R. En caso de cualquier duda, se recomienda consultar la documentación oficial sobre el acceso a SoilGrids WebDAV desde R.
Luego instalamos las librerías desde la consola, no desde el cuaderno.
##it is assummed that you already installed terra, ggplot2, tidyerra, sf, and leaflet
##paquetes= c('XML','rgdal', 'dplyr','devtools', 'stars', 'mapview', 'RColorBrewer')
##install.packages(paquetes)
## in addition, use either 1 or 2 options below
##option1##
#devtools::install_github("JoshOBrien/gdalUtilities")
##option2##
#devtools::install_github('gearslaboratory/gdalUtils')
#The utilite from
Vamos a llamar las librerías.
library(terra)
## Warning: package 'terra' was built under R version 4.5.2
## terra 1.8.80
library(ggplot2)
## Warning: package 'ggplot2' was built under R version 4.5.2
library(tidyterra)
## Warning: package 'tidyterra' was built under R version 4.5.2
##
## Adjuntando el paquete: 'tidyterra'
## The following object is masked from 'package:stats':
##
## filter
library(sf)
## Warning: package 'sf' was built under R version 4.5.2
## Linking to GEOS 3.13.1, GDAL 3.11.4, PROJ 9.7.0; sf_use_s2() is TRUE
library(leaflet)
## Warning: package 'leaflet' was built under R version 4.5.2
library(RColorBrewer)
## Warning: package 'RColorBrewer' was built under R version 4.5.2
library(gdalUtilities)
##
## Adjuntando el paquete: 'gdalUtilities'
## The following object is masked from 'package:sf':
##
## gdal_rasterize
library(XML)
## Warning: package 'XML' was built under R version 4.5.2
library(dplyr)
##
## Adjuntando el paquete: 'dplyr'
## The following objects are masked from 'package:terra':
##
## intersect, union
## The following objects are masked from 'package:stats':
##
## filter, lag
## The following objects are masked from 'package:base':
##
## intersect, setdiff, setequal, union
SoilGrids es una plataforma global de modelamiento digital de suelos desarrollada por el ISRIC – World Soil Information, que utiliza técnicas de aprendizaje automático (machine learning) para predecir propiedades y clases del suelo a diferentes profundidades. Su objetivo principal es ofrecer una base de datos mundial, estandarizada y accesible, que permita conocer la distribución espacial de variables edáficas como el carbono orgánico, la textura, el pH o la densidad aparente, entre otras.
El sistema se fundamenta en un conjunto de covariables globales (como topografía, clima, uso del suelo, vegetación y geología) y miles de perfiles de suelo provenientes de observaciones de campo, que son integrados mediante modelos predictivos ajustados a escala planetaria. De esta forma, cada celda del mapa representa un valor estimado del suelo en una resolución espacial de 250 metros, permitiendo visualizar patrones y tendencias a gran escala.
Es importante resaltar que, aunque SoilGrids ofrece información muy útil para estudios regionales y globales, los mapas nacionales suelen ser más detallados y precisos dentro de sus áreas de cobertura. En el caso de Colombia, el Instituto Geográfico Agustín Codazzi (IGAC) es la entidad encargada de generar cartografía de suelos con mayor resolución y validación local, por lo que se recomienda comparar los resultados de SoilGrids con los mapas del IGAC al realizar análisis de carácter local o aplicado.
Por último, SoilGrids permite trabajar tanto con el valor medio (mean) como con la mediana (0.5 quantile) de cada propiedad del suelo. El valor medio representa la predicción esperada, ofreciendo una estimación imparcial, mientras que la mediana tiende a ser más robusta ante valores atípicos y puede ser útil en estudios comparativos o regionales. Set variables of interest:
Primero, definimos la URL correspondiente al sitio webDAV del ISRIC, Es decir, la ruta de acceso a los datos de SoilGrids disponibles en línea.
url = "https://files.isric.org/soilgrids/latest/data/"
Luego, creamos algunos objetos que indican qué información necesitamos obtener del ISRIC:
— cadenas básicas — carbono orgánico del suelo
voi = "soc" # soil organic carbon
depth = "15-30cm"
quantile = "mean"
Concatenamos las cadenas de texto.
(variable = paste(url, voi, sep=""))
## [1] "https://files.isric.org/soilgrids/latest/data/soc"
Ahora definimos la propiedad del suelo que deseamos descargar —es decir, la capa de interés—.
(layer = paste(variable,depth,quantile, sep="_"))
## [1] "https://files.isric.org/soilgrids/latest/data/soc_15-30cm_mean"
Con esto, la especificación del archivo VRT queda completa.
(vrt_layer = paste(layer, '.vrt', sep=""))
## [1] "https://files.isric.org/soilgrids/latest/data/soc_15-30cm_mean.vrt"
Vamos a leer un geopackage de Colombia y después seleccionamos nuestro departamento de interés.
Cambia la ruta y el nombre del archivo para que coincidan con los datos que estás utilizando.
(stder = st_read("ValleDelCaucaDANE.gpkg"))
## Multiple layers are present in data source C:\Users\Yoly\OneDrive\Desktop\RstudioProyecto\ValleDelCaucaDANE.gpkg, reading layer `mgn_anm_mpios'.
## Use `st_layers' to list all layer names and their type in a data source.
## Set the `layer' argument in `st_read' to read a particular layer.
## Warning in CPL_read_ogr(dsn, layer, query, as.character(options), quiet, :
## automatically selected the first layer in a data source containing more than
## one.
## Reading layer `mgn_anm_mpios' from data source
## `C:\Users\Yoly\OneDrive\Desktop\RstudioProyecto\ValleDelCaucaDANE.gpkg'
## using driver `GPKG'
## Simple feature collection with 42 features and 6 fields
## Geometry type: MULTIPOLYGON
## Dimension: XY
## Bounding box: xmin: -77.54977 ymin: 3.091239 xmax: -75.70724 ymax: 5.047394
## Geodetic CRS: MAGNA-SIRGAS
## Simple feature collection with 42 features and 6 fields
## Geometry type: MULTIPOLYGON
## Dimension: XY
## Bounding box: xmin: -77.54977 ymin: 3.091239 xmax: -75.70724 ymax: 5.047394
## Geodetic CRS: MAGNA-SIRGAS
## First 10 features:
## DPTO_CCDGO MPIO_CCDGO MPIO_CNMBR MPIO_CDPMP VERSION STCTNENCUE
## 1 76 001 CALI 76001 2018 749642
## 2 76 036 ANDALUCÍA 76036 2018 9439
## 3 76 041 ANSERMANUEVO 76041 2018 10533
## 4 76 054 ARGELIA 76054 2018 2900
## 5 76 111 GUADALAJARA DE BUGA 76111 2018 48459
## 6 76 113 BUGALAGRANDE 76113 2018 10610
## 7 76 122 CAICEDONIA 76122 2018 11841
## 8 76 126 CALIMA 76126 2018 11549
## 9 76 130 CANDELARIA 76130 2018 30849
## 10 76 147 CARTAGO 76147 2018 50848
## geom
## 1 MULTIPOLYGON (((-76.59175 3...
## 2 MULTIPOLYGON (((-76.22406 4...
## 3 MULTIPOLYGON (((-76.01558 4...
## 4 MULTIPOLYGON (((-76.14316 4...
## 5 MULTIPOLYGON (((-76.31608 3...
## 6 MULTIPOLYGON (((-76.15131 4...
## 7 MULTIPOLYGON (((-75.8539 4....
## 8 MULTIPOLYGON (((-76.51747 4...
## 9 MULTIPOLYGON (((-76.30455 3...
## 10 MULTIPOLYGON (((-75.94518 4...
Observa el CRS (sistema de referencia de coordenadas) del objeto stder.
Dado que las capas del ISRIC utilizan la proyección Homolosine, es necesario reproyectar nuestra capa empleando la librería sf
igh='+proj=igh +lat_0=0 +lon_0=0 +datum=WGS84 +units=m +no_defs'
stder_igh <- st_transform(stder, igh)
Obtengamos ahora el cuadro delimitador (bounding box) de nuestra área de interés
(bbox <- st_bbox(stder_igh))
## xmin ymin xmax ymax
## -8636772.5 344115.1 -8436619.1 561873.3
ul significa upper left (esquina superior izquierda) lr significa lower right (esquina inferior derecha)
ulx = bbox$xmin
uly = bbox$ymax
lrx= bbox$xmax
lry = bbox$ymin
(bb <- c(ulx, uly, lrx, lry))
## xmin ymax xmax ymin
## -8636772.5 561873.3 -8436619.1 344115.1
Ahora podemos usar la función gdal_translate para descargar la capa en formato VRT. Primero, definamos la ubicación donde se guardarán los datos.
sg_url="/vsicurl/https://files.isric.org/soilgrids/latest/data/"
datos = 'soc/soc_15-30cm_mean.vrt'
file = "soc_igh_15_30.tif"
#Lo siguiente va sin comentarlo la primera vez que se use, luego comentarlo de vuelta
library(gdalUtilities)
gdal_translate(paste0(sg_url,datos), file ,
tr=c(250,250),
projwin=bb,
projwin_srs =igh)
Se divide por 10 porque las unidades estaban en la tabla.
(stder_soc <- terra::rast(file)/10)
## class : SpatRaster
## size : 872, 802, 1 (nrow, ncol, nlyr)
## resolution : 250, 250 (x, y)
## extent : -8637000, -8436500, 344000, 562000 (xmin, xmax, ymin, ymax)
## coord. ref. : Interrupted_Goode_Homolosine
## source(s) : memory
## varname : soc_igh_15_30
## name : soc_igh_15_30
## min value : 13.2
## max value : 313.4
Enseguida vamos a tener un histograma para ver la distribución de los datos.
terra::hist(stder_soc)
Un resumen es muy util:
summary(stder_soc)
## Warning: [summary] used a sample
## soc_igh_15_30
## Min. : 13.30
## 1st Qu.: 36.20
## Median : 62.40
## Mean : 93.94
## 3rd Qu.:164.10
## Max. :306.10
## NA's :10946
Vamos a cambiar el nombre del atributo SOC:
(names(stder_soc) <- "soc")
## [1] "soc"
Es momento de plotear
Ponemos los valores de SOC en una variable:
valores <- values(stder_soc, na.rm=TRUE)
Creamos una paleta de color:
orangecyan <- colorNumeric(c("orange","yellow2", "darkseagreen", "cyan" ), valores,
na.color = "transparent")
Por ultimo ploteamos el mapa
leaflet::leaflet(stder) %>%
addTiles() %>%
setView(-76.5, 3.8, 8,1) %>%
addPolygons(color = "gray", weight = 1.0, smoothFactor = 0.5,
opacity = 0.5, fillOpacity = 0.10,
popup = paste("Municipio: ", stder$MPIO_CNMBR)) %>%
addRasterImage(stder_soc, colors ="Spectral", opacity = 0.8) %>%
addLegend(pal = orangecyan, values = valores, title = "Soil Organic Carbon (SOC) [g/kg]")
## Warning: sf layer has inconsistent datum (+proj=longlat +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +no_defs).
## Need '+proj=longlat +datum=WGS84'
Paleta continua azul–verde
pal_soc_cont <- leaflet::colorNumeric(
palette = c("#08306B","#2171B5","#41B6C4","#A1DAB4","#FFFFCC"),
domain = valores,
na.color = "transparent"
)
leaflet(stder) %>%
addProviderTiles(providers$Esri.WorldImagery) %>%
addProviderTiles(providers$CartoDB.PositronOnlyLabels) %>%
setView(lng = -76.5, lat = 3.8, zoom = 8) %>%
addRasterImage(stder_soc, colors = pal_soc_cont, opacity = 0.85) %>%
addPolygons(color = "white", weight = 1, fill = FALSE,
label = ~paste0("Municipio: ", MPIO_CNMBR)) %>%
addLegend(pal = pal_soc_cont, values = valores,
title = "SOC (g/kg)", opacity = 1)
## Warning: sf layer has inconsistent datum (+proj=longlat +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +no_defs).
## Need '+proj=longlat +datum=WGS84'
Otra visualización:
Corta el continuo en 7 clases por cuantiles
qs <- quantile(valores, probs = seq(0, 1, length.out = 8), na.rm = TRUE)
pal_soc_cls <- leaflet::colorBin(
palette = c("#00441B","#1B7837","#5AAE61","#A6DBA0",
"#D9F0D3","#FEE08B","#F46D43"),
domain = valores,
bins = qs,
na.color = "transparent"
)
leaflet(stder) %>%
addProviderTiles(providers$Esri.WorldTopoMap) %>%
setView(lng = -76.5, lat = 3.8, zoom = 8) %>%
addRasterImage(stder_soc, colors = pal_soc_cls, opacity = 0.85) %>%
addPolygons(color = "gray30", weight = 1, fill = FALSE,
label = ~paste0("Municipio: ", MPIO_CNMBR)) %>%
addLegend(pal = pal_soc_cls, values = valores,
title = "SOC (g/kg) — cuantiles", opacity = 1)
## Warning: sf layer has inconsistent datum (+proj=longlat +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +no_defs).
## Need '+proj=longlat +datum=WGS84'
Una visualización más
Si no lo tienes:
if (!requireNamespace("exactextractr", quietly = TRUE)) install.packages("exactextractr")
library(exactextractr)
## Warning: package 'exactextractr' was built under R version 4.5.2
stder_wgs <- tryCatch(sf::st_transform(stder, 4326), error = function(e) stder)
soc_wgs <- tryCatch(terra::project(stder_soc, "EPSG:4326"), error = function(e) stder_soc)
ctr <- sf::st_coordinates(sf::st_centroid(sf::st_union(stder_wgs)))
Media por municipio
stder_wgs$SOC_mean <- exactextractr::exact_extract(soc_wgs, stder_wgs, 'mean')
## | | | 0% | |== | 2% | |=== | 5% | |===== | 7% | |======= | 10% | |======== | 12% | |========== | 14% | |============ | 17% | |============= | 19% | |=============== | 21% | |================= | 24% | |================== | 26% | |==================== | 29% | |====================== | 31% | |======================= | 33% | |========================= | 36% | |=========================== | 38% | |============================ | 40% | |============================== | 43% | |================================ | 45% | |================================= | 48% | |=================================== | 50% | |===================================== | 52% | |====================================== | 55% | |======================================== | 57% | |========================================== | 60% | |=========================================== | 62% | |============================================= | 64% | |=============================================== | 67% | |================================================ | 69% | |================================================== | 71% | |==================================================== | 74% | |===================================================== | 76% | |======================================================= | 79% | |========================================================= | 81% | |========================================================== | 83% | |============================================================ | 86% | |============================================================== | 88% | |=============================================================== | 90% | |================================================================= | 93% | |=================================================================== | 95% | |==================================================================== | 98% | |======================================================================| 100%
Paleta por cuantiles (7 clases)
pal_muni <- colorBin(
palette = c("#00441B","#1B7837","#5AAE61","#A6DBA0","#D9F0D3","#FEE08B","#F46D43"),
domain = stder_wgs$SOC_mean,
bins = quantile(stder_wgs$SOC_mean, probs = seq(0,1,length.out = 8), na.rm = TRUE),
na.color = "transparent"
)
leaflet(stder_wgs) %>%
addProviderTiles(providers$Esri.WorldTopoMap) %>%
setView(lng = ctr[1], lat = ctr[2], zoom = 8) %>%
addPolygons(
fillColor = ~pal_muni(SOC_mean),
color = "gray30", weight = 1, opacity = .8, fillOpacity = .8,
label = ~paste0("Municipio: ", MPIO_CNMBR, " , ",
"SOC medio: ", round(SOC_mean, 2), " g/kg")
) %>%
addLegend(pal = pal_muni, values = stder_wgs$SOC_mean,
title = "SOC promedio (g/kg)", opacity = 1)
Debemos hacer lo siguiente si estamos interesados en obtener una muestra de datos del SOC. Usaremos la libreria terra para este proposito.
Cambios que necesitamos:
set.seed(123456)
Conversión del sistema de coordenadas de referencias del SOC
geog ="+proj=longlat +datum=WGS84"
(geog.soc = project(stder_soc, geog))
## class : SpatRaster
## size : 884, 840, 1 (nrow, ncol, nlyr)
## resolution : 0.002216296, 0.002216296 (x, y)
## extent : -77.55485, -75.69317, 3.089326, 5.048532 (xmin, xmax, ymin, ymax)
## coord. ref. : +proj=longlat +datum=WGS84 +no_defs
## source(s) : memory
## name : soc
## min value : 13.37023
## max value : 309.09845
Obtención de 2000 puntos de muestra al azar:
(samples <- terra::spatSample(geog.soc, 2000, "random", as.points=TRUE))
## class : SpatVector
## geometry : points
## dimensions : 2000, 1 (geometries, attributes)
## extent : -77.55153, -75.69427, 3.090434, 5.047424 (xmin, xmax, ymin, ymax)
## coord. ref. : +proj=longlat +datum=WGS84 +no_defs
## names : soc
## type : <num>
## values : 191.5
## NA
## 207.6
Observa dos cosas:
Por lo tanto, necesitamos realizar varios procesos de tratamiento de datos. A continuación, se explica cada bloque de código que sigue.
(muestras <- sf::st_as_sf(samples))
## Simple feature collection with 2000 features and 1 field
## Geometry type: POINT
## Dimension: XY
## Bounding box: xmin: -77.55153 ymin: 3.090434 xmax: -75.69427 ymax: 5.047424
## Geodetic CRS: GEOGCRS["unknown",
## DATUM["World Geodetic System 1984",
## ELLIPSOID["WGS 84",6378137,298.257223563,
## LENGTHUNIT["metre",1]],
## ID["EPSG",6326]],
## PRIMEM["Greenwich",0,
## ANGLEUNIT["degree",0.0174532925199433],
## ID["EPSG",8901]],
## CS[ellipsoidal,2],
## AXIS["longitude",east,
## ORDER[1],
## ANGLEUNIT["degree",0.0174532925199433,
## ID["EPSG",9122]]],
## AXIS["latitude",north,
## ORDER[2],
## ANGLEUNIT["degree",0.0174532925199433,
## ID["EPSG",9122]]]]
## First 10 features:
## soc geometry
## 1 191.45763 POINT (-76.77804 4.916662)
## 2 NA POINT (-77.44736 4.956556)
## 3 207.56955 POINT (-77.09054 4.770387)
## 4 NA POINT (-77.3986 4.524378)
## 5 190.73111 POINT (-76.81794 4.544325)
## 6 70.45535 POINT (-76.32813 4.885634)
## 7 29.53420 POINT (-75.97574 4.198582)
## 8 205.42062 POINT (-76.75588 4.273936)
## 9 135.55244 POINT (-77.21465 3.580236)
## 10 NA POINT (-77.42742 3.367471)
Vamos a omitir los valores NA
nmuestras <- na.omit(muestras)
Ahora veremos las muestras limpias
longit <- st_coordinates(nmuestras)[,1]
latit <- st_coordinates(nmuestras)[,2]
soc <- nmuestras$soc
¿Qué obtenemos?
summary(soc)
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 14.73 36.48 61.50 92.53 161.57 242.38
length(soc)
## [1] 1748
¿Cuántas muestras no contenian unos datos validos?
id <- seq(1,1748,1)
(sitios <- data.frame(id, longit, latit, soc))
## id longit latit soc
## 1 1 -76.77804 4.916662 191.45763
## 2 2 -77.09054 4.770387 207.56955
## 3 3 -76.81794 4.544325 190.73111
## 4 4 -76.32813 4.885634 70.45535
## 5 5 -75.97574 4.198582 29.53420
## 6 6 -76.75588 4.273936 205.42062
## 7 7 -77.21465 3.580236 135.55244
## 8 8 -76.35473 4.681735 77.91371
## 9 9 -76.32148 3.159140 17.74600
## 10 10 -76.53425 4.641842 182.51727
## 11 11 -77.03070 3.633427 177.21919
## 12 12 -76.92875 3.631211 177.12788
## 13 13 -77.29666 4.734926 106.60297
## 14 14 -75.95358 4.289451 33.99530
## 15 15 -76.35916 3.130328 24.79914
## 16 16 -76.76031 3.192384 44.74848
## 17 17 -76.46111 4.664005 74.42857
## 18 18 -77.04400 4.087768 152.80603
## 19 19 -77.07059 3.660023 147.60312
## 20 20 -76.45003 4.132094 91.73940
## 21 21 -76.76696 4.781468 180.99777
## 22 22 -76.88886 3.289901 33.51029
## 23 23 -76.15748 4.016846 27.27403
## 24 24 -76.50987 4.615246 207.06580
## 25 25 -76.40127 4.041225 42.12121
## 26 26 -77.30995 4.872336 168.15280
## 27 27 -77.02405 3.886085 72.09994
## 28 28 -76.11537 3.999116 41.12426
## 29 29 -76.81794 4.845741 211.05185
## 30 30 -76.33035 4.278369 51.68089
## 31 31 -77.33433 4.265071 177.41652
## 32 32 -76.59631 3.132544 19.66570
## 33 33 -76.02672 4.992016 54.77476
## 34 34 -77.12600 4.816929 207.11887
## 35 35 -76.74480 4.777036 166.35468
## 36 36 -76.46333 4.546541 40.82617
## 37 37 -75.86271 3.988034 49.02892
## 38 38 -76.02007 4.748224 30.24277
## 39 39 -75.96245 4.890067 39.61139
## 40 40 -76.78247 3.378553 50.55745
## 41 41 -76.25278 3.416230 20.03991
## 42 42 -77.23682 3.489368 150.19772
## 43 43 -76.11537 3.730944 87.71574
## 44 44 -75.73860 3.892734 64.25546
## 45 45 -77.20135 3.363039 147.31367
## 46 46 -77.15924 4.070037 170.66676
## 47 47 -76.76696 4.845741 181.43777
## 48 48 -76.07104 3.611264 54.51231
## 49 49 -77.09497 4.874553 191.76550
## 50 50 -76.24391 4.701682 76.66525
## 51 51 -76.97972 4.650707 221.07130
## 52 52 -76.85118 4.187501 175.64182
## 53 53 -76.96643 3.159140 58.78161
## 54 54 -75.76076 4.426861 31.40083
## 55 55 -76.75145 3.134760 37.38686
## 56 56 -76.29711 3.265522 22.33255
## 57 57 -77.33433 4.825794 162.45772
## 58 58 -76.61182 4.980935 191.77859
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## 1396 1396 -77.27449 3.223412 165.09781
## 1397 1397 -76.97308 4.980935 211.06677
## 1398 1398 -76.60739 4.821362 217.62454
## 1399 1399 -75.90925 4.655139 23.08732
## 1400 1400 -77.24790 3.130328 197.70885
## 1401 1401 -76.11315 3.230061 59.28955
## 1402 1402 -77.39417 3.347525 126.80534
## 1403 1403 -77.19249 4.599732 185.15500
## 1404 1404 -75.76519 3.218980 70.17084
## 1405 1405 -76.54755 3.584668 43.05400
## 1406 1406 -76.33700 5.003098 75.40246
## 1407 1407 -76.27716 4.741575 51.96560
## 1408 1408 -75.99347 3.699916 71.68795
## 1409 1409 -76.66944 3.243359 39.82531
## 1410 1410 -77.25011 4.460105 164.61021
## 1411 1411 -76.32148 3.181303 20.05318
## 1412 1412 -76.59409 3.768621 30.31105
## 1413 1413 -75.77849 3.748674 50.98845
## 1414 1414 -77.37644 3.278820 148.25067
## 1415 1415 -77.28779 4.692816 195.59697
## 1416 1416 -75.99126 4.457889 23.22446
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## 1419 1419 -75.97131 4.644058 20.98346
## 1420 1420 -76.37689 4.921095 93.28304
## 1421 1421 -76.60739 4.690600 208.23573
## 1422 1422 -75.80509 3.925978 52.74604
## 1423 1423 -77.23238 4.746008 148.59587
## 1424 1424 -77.07724 3.440609 48.19263
## 1425 1425 -76.51874 5.027477 217.13608
## 1426 1426 -76.65171 3.846191 65.11930
## 1427 1427 -76.63177 3.970304 50.87437
## 1428 1428 -76.77139 3.422879 34.07169
## 1429 1429 -76.19072 4.136526 27.01420
## 1430 1430 -76.12423 3.267738 59.33893
## 1431 1431 -76.19737 4.349291 29.35242
## 1432 1432 -76.19072 3.491584 32.86789
## 1433 1433 -76.98637 4.302748 168.55278
## 1434 1434 -77.44958 3.238926 103.98506
## 1435 1435 -76.23283 3.469421 22.61671
## 1436 1436 -76.60960 4.311614 191.92218
## 1437 1437 -75.76963 4.087768 80.41204
## 1438 1438 -77.24346 3.903815 152.42755
## 1439 1439 -75.88487 3.496017 64.35846
## 1440 1440 -77.34541 3.296550 150.53879
## 1441 1441 -75.86050 4.007981 47.88081
## 1442 1442 -77.10384 4.101065 165.74489
## 1443 1443 -76.52095 4.677302 84.26266
## 1444 1444 -76.54090 3.152491 25.94873
## 1445 1445 -76.83567 3.972520 176.99759
## 1446 1446 -76.60517 3.759756 24.95078
## 1447 1447 -76.61404 3.493800 34.03888
## 1448 1448 -77.15260 4.615246 164.75569
## 1449 1449 -77.15260 3.507098 168.77275
## 1450 1450 -76.96421 3.560289 82.51413
## 1451 1451 -77.04400 4.799199 205.90065
## 1452 1452 -77.36979 4.061172 141.84959
## 1453 1453 -76.05775 4.409131 18.45739
## 1454 1454 -76.01120 3.473854 77.58095
## 1455 1455 -77.06173 3.932627 130.72813
## 1456 1456 -75.98904 4.087768 42.30409
## 1457 1457 -76.43673 4.003548 35.29539
## 1458 1458 -75.92034 3.230061 59.61453
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## 1460 1460 -76.78912 3.553640 28.09448
## 1461 1461 -76.15305 3.097083 52.88100
## 1462 1462 -77.02405 4.781468 204.65018
## 1463 1463 -77.32325 3.243359 139.53879
## 1464 1464 -76.98859 4.967637 190.76273
## 1465 1465 -76.91324 3.269954 34.83152
## 1466 1466 -76.03337 4.333776 25.27912
## 1467 1467 -77.03956 3.531477 107.07806
## 1468 1468 -76.73372 4.415779 171.05795
## 1469 1469 -76.97529 4.801415 210.72536
## 1470 1470 -76.91545 4.196366 160.93129
## 1471 1471 -76.76696 4.965421 210.22772
## 1472 1472 -76.82458 4.584218 203.17715
## 1473 1473 -75.96466 4.819145 25.99167
## 1474 1474 -77.33433 4.978719 204.14644
## 1475 1475 -76.87999 3.141409 44.79200
## 1476 1476 -76.84010 3.267738 41.47965
## 1477 1477 -77.00854 3.241143 84.91908
## 1478 1478 -76.41457 3.515963 16.55029
## 1479 1479 -75.86050 3.976953 52.25997
## 1480 1480 -77.11935 3.256657 59.47843
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## 1482 1482 -76.22397 3.553640 19.52790
## 1483 1483 -76.62290 3.553640 30.62351
## 1484 1484 -76.83567 3.336443 61.95407
## 1485 1485 -76.93318 4.203015 170.46960
## 1486 1486 -76.45668 4.546541 64.10278
## 1487 1487 -76.04888 3.950357 38.74433
## 1488 1488 -75.80287 4.010197 52.47979
## 1489 1489 -76.02007 4.759305 27.93525
## 1490 1490 -76.70490 4.945474 192.56589
## 1491 1491 -76.00899 4.606381 32.73178
## 1492 1492 -77.04400 4.076686 145.32152
## 1493 1493 -75.74746 4.863471 34.56350
## 1494 1494 -76.13532 4.688384 37.08624
## 1495 1495 -76.03780 4.754873 35.93631
## 1496 1496 -77.23238 3.185735 168.94362
## 1497 1497 -76.16856 3.356390 45.61197
## 1498 1498 -76.73815 4.874553 179.77615
## 1499 1499 -76.56971 3.555857 43.01748
## 1500 1500 -75.94693 4.222962 34.76273
## 1501 1501 -75.72752 4.187501 49.26937
## 1502 1502 -75.75633 4.003548 70.49745
## 1503 1503 -76.41457 3.329794 22.71875
## 1504 1504 -77.24790 4.752656 145.12427
## 1505 1505 -76.11315 3.892734 53.11564
## 1506 1506 -77.23903 5.031910 202.33566
## 1507 1507 -76.32592 4.546541 31.84894
## 1508 1508 -77.18584 4.783685 193.45825
## 1509 1509 -76.14861 5.029693 93.40835
## 1510 1510 -76.87556 3.283252 45.45449
## 1511 1511 -76.03337 4.065605 53.78588
## 1512 1512 -75.82282 4.477836 26.95209
## 1513 1513 -75.79622 3.996899 51.64433
## 1514 1514 -77.02405 4.067821 164.50641
## 1515 1515 -76.51430 3.272171 21.40075
## 1516 1516 -76.84010 3.919329 177.66562
## 1517 1517 -76.95756 4.777036 222.17554
## 1518 1518 -75.85163 3.859489 65.80766
## 1519 1519 -76.43008 4.045658 41.30980
## 1520 1520 -76.20402 3.194600 31.28476
## 1521 1521 -76.93097 4.147608 204.61937
## 1522 1522 -76.85783 4.754873 102.90000
## 1523 1523 -75.83390 4.763738 27.25376
## 1524 1524 -76.02007 3.314280 67.59564
## 1525 1525 -76.96864 4.845741 234.62822
## 1526 1526 -76.15970 3.369688 53.66520
## 1527 1527 -77.24568 4.739359 156.41846
## 1528 1528 -76.11759 4.267288 22.42252
## 1529 1529 -76.13310 4.189717 23.48024
## 1530 1530 -77.02848 4.475619 161.10374
## 1531 1531 -76.07104 4.938825 82.20901
## 1532 1532 -76.58966 3.963655 79.44055
## 1533 1533 -76.23283 4.402482 52.33321
## 1534 1534 -76.36581 3.693267 19.68710
## 1535 1535 -76.81794 3.850624 62.55151
## 1536 1536 -76.15970 5.003098 69.30100
## 1537 1537 -76.87334 3.143626 39.40308
## 1538 1538 -75.96688 3.653374 59.97458
## 1539 1539 -77.31660 4.890067 196.80002
## 1540 1540 -75.77628 4.114363 63.13062
## 1541 1541 -76.36138 4.539892 46.61900
## 1542 1542 -76.47219 4.129877 49.38313
## 1543 1543 -76.40349 3.648941 16.57396
## 1544 1544 -76.24170 4.885634 53.76058
## 1545 1545 -75.84498 4.123228 58.17385
## 1546 1546 -76.64728 4.121012 180.91684
## 1547 1547 -75.75190 3.199033 78.22055
## 1548 1548 -77.13265 3.972520 153.06519
## 1549 1549 -76.90880 3.735377 46.12214
## 1550 1550 -76.53425 4.537676 72.54921
## 1551 1551 -76.51430 3.910464 36.68642
## 1552 1552 -76.04666 3.850624 66.35525
## 1553 1553 -76.41679 3.906031 28.15901
## 1554 1554 -77.19471 3.303199 155.24179
## 1555 1555 -76.13088 3.704348 70.89468
## 1556 1556 -76.78026 4.843525 162.54608
## 1557 1557 -76.56306 4.573136 213.06963
## 1558 1558 -77.02183 3.626778 129.73381
## 1559 1559 -76.75366 4.440159 207.62122
## 1560 1560 -76.25500 4.163122 21.26369
## 1561 1561 -76.46333 4.344858 35.33222
## 1562 1562 -76.24170 3.445042 20.39161
## 1563 1563 -76.52095 3.214547 19.60646
## 1564 1564 -75.80952 4.655139 25.04122
## 1565 1565 -75.85385 4.351507 27.10251
## 1566 1566 -76.00234 4.754873 29.34813
## 1567 1567 -75.85828 3.218980 71.85995
## 1568 1568 -76.27273 4.280585 33.94470
## 1569 1569 -76.60517 4.679519 194.18248
## 1570 1570 -76.92210 4.271720 169.91577
## 1571 1571 -77.00632 3.527045 42.12113
## 1572 1572 -77.10162 3.515963 182.27466
## 1573 1573 -76.14418 3.287685 56.64009
## 1574 1574 -77.34985 4.298316 124.57542
## 1575 1575 -75.88487 3.954790 61.64587
## 1576 1576 -76.79356 3.688834 36.76326
## 1577 1577 -77.26563 4.912230 173.76326
## 1578 1578 -76.77139 4.661788 202.51906
## 1579 1579 -76.54533 3.190168 25.14629
## 1580 1580 -77.38974 4.005765 125.71940
## 1581 1581 -76.01564 3.276603 63.32016
## 1582 1582 -76.58301 4.010197 48.55687
## 1583 1583 -76.19959 3.988034 22.39956
## 1584 1584 -76.17299 3.473854 48.42622
## 1585 1585 -75.72973 4.548757 24.56484
## 1586 1586 -76.82680 4.956556 228.94135
## 1587 1587 -77.14151 3.334227 68.32051
## 1588 1588 -75.95801 4.342642 30.78073
## 1589 1589 -75.90261 4.070037 62.19358
## 1590 1590 -76.22618 3.267738 19.78212
## 1591 1591 -76.67831 4.065605 208.98021
## 1592 1592 -76.40792 4.278369 69.36736
## 1593 1593 -77.05286 3.819596 123.59300
## 1594 1594 -76.18629 4.287234 24.11238
## 1595 1595 -77.42742 3.258873 96.68759
## 1596 1596 -77.45180 4.132094 165.31531
## 1597 1597 -76.02672 4.584218 30.63236
## 1598 1598 -75.84498 4.757089 41.42761
## 1599 1599 -77.18362 4.996449 187.72302
## 1600 1600 -76.09321 3.165789 58.14753
## 1601 1601 -77.52272 4.138742 96.84297
## 1602 1602 -77.04621 3.128112 70.73117
## 1603 1603 -76.12423 4.163122 25.73600
## 1604 1604 -76.99524 3.566938 146.92738
## 1605 1605 -76.26164 4.666221 52.96614
## 1606 1606 -77.13487 4.726061 205.13492
## 1607 1607 -76.07548 3.447258 61.22968
## 1608 1608 -76.47663 4.836876 225.53200
## 1609 1609 -77.45844 3.247791 113.65842
## 1610 1610 -76.78247 3.407365 36.76254
## 1611 1611 -77.06838 3.487151 52.24067
## 1612 1612 -76.40570 4.741575 83.44025
## 1613 1613 -76.18407 4.278369 25.24920
## 1614 1614 -75.90482 3.192384 50.28202
## 1615 1615 -76.25500 3.287685 17.49773
## 1616 1616 -77.17919 4.562055 159.42708
## 1617 1617 -77.15703 3.119246 213.60333
## 1618 1618 -76.23948 4.737142 36.81647
## 1619 1619 -76.18186 4.630760 48.59246
## 1620 1620 -75.75411 3.941492 55.39495
## 1621 1621 -77.22573 4.074470 72.61803
## 1622 1622 -76.08434 4.803631 40.80395
## 1623 1623 -76.72928 3.487151 52.40709
## 1624 1624 -75.85385 3.482719 44.53431
## 1625 1625 -76.98637 4.728277 204.14529
## 1626 1626 -76.68496 3.303199 66.95326
## 1627 1627 -75.84498 3.558073 70.94228
## 1628 1628 -77.00854 4.471187 136.67799
## 1629 1629 -75.93142 4.160905 52.76233
## 1630 1630 -76.50322 5.023044 222.96460
## 1631 1631 -75.91812 3.112597 60.66090
## 1632 1632 -76.44781 4.167554 75.69273
## 1633 1633 -76.39906 3.779702 23.35841
## 1634 1634 -77.17476 4.384751 159.92970
## 1635 1635 -76.37246 4.360372 41.25663
## 1636 1636 -76.87556 3.161356 35.89322
## 1637 1637 -77.25676 4.597516 121.94578
## 1638 1638 -76.72707 3.232277 51.67800
## 1639 1639 -76.23062 3.877220 36.46235
## 1640 1640 -76.05996 4.462322 18.87939
## 1641 1641 -76.05553 3.374120 64.07526
## 1642 1642 -76.95978 3.376337 62.19299
## 1643 1643 -77.06394 3.695483 118.89298
## 1644 1644 -76.62512 3.445042 48.01538
## 1645 1645 -75.98018 3.892734 59.00153
## 1646 1646 -76.90659 3.256657 41.42551
## 1647 1647 -76.90659 3.110381 28.05548
## 1648 1648 -76.62955 3.637860 29.79593
## 1649 1649 -76.78026 4.801415 194.92262
## 1650 1650 -76.39684 4.630760 105.50174
## 1651 1651 -75.93807 4.353723 27.65042
## 1652 1652 -76.80242 4.710547 172.94336
## 1653 1653 -75.80066 4.457889 26.16889
## 1654 1654 -76.20402 4.056739 20.64127
## 1655 1655 -76.97086 3.294334 42.39005
## 1656 1656 -76.74923 4.712763 191.96114
## 1657 1657 -76.46998 3.983602 37.83456
## 1658 1658 -76.52760 5.005314 180.32910
## 1659 1659 -75.78957 3.739809 64.77818
## 1660 1660 -77.05065 3.668888 150.77299
## 1661 1661 -76.86669 4.748224 205.09778
## 1662 1662 -76.82680 4.938825 224.65997
## 1663 1663 -77.35871 5.011963 186.55991
## 1664 1664 -77.46731 3.103732 143.26465
## 1665 1665 -76.21289 3.218980 26.83351
## 1666 1666 -77.02848 4.752656 232.96480
## 1667 1667 -76.95756 4.045658 170.44273
## 1668 1668 -75.81174 3.941492 60.65985
## 1669 1669 -77.13930 3.227845 198.58286
## 1670 1670 -76.44560 3.236710 24.50496
## 1671 1671 -77.31660 3.132544 164.16528
## 1672 1672 -76.15748 3.092651 50.32657
## 1673 1673 -76.87999 4.976502 223.29901
## 1674 1674 -77.13708 3.092651 68.05831
## 1675 1675 -76.90659 4.544325 202.57526
## 1676 1676 -76.26386 3.351957 19.04411
## 1677 1677 -77.05951 4.050091 116.58587
## 1678 1678 -76.20845 4.402482 49.76635
## 1679 1679 -76.59409 4.606381 197.12260
## 1680 1680 -76.70269 4.657356 180.96986
## 1681 1681 -76.08877 4.125445 28.92029
## 1682 1682 -76.06661 3.394067 59.23813
## 1683 1683 -75.98461 3.644508 64.05120
## 1684 1684 -76.76918 3.693267 54.45438
## 1685 1685 -76.52095 3.562505 33.27818
## 1686 1686 -76.64063 4.994233 196.36789
## 1687 1687 -75.90039 5.040775 39.98794
## 1688 1688 -76.11759 4.901148 67.35924
## 1689 1689 -76.49879 3.365255 19.42959
## 1690 1690 -77.00410 3.387418 30.71922
## 1691 1691 -76.32592 4.610813 61.38544
## 1692 1692 -76.12423 4.590867 48.26079
## 1693 1693 -76.36581 4.785901 75.51566
## 1694 1694 -76.98637 3.928194 156.87357
## 1695 1695 -77.07503 4.763738 197.89328
## 1696 1696 -77.45180 3.125895 145.66885
## 1697 1697 -77.20135 4.169771 92.59660
## 1698 1698 -77.45180 4.191934 180.04161
## 1699 1699 -76.80464 3.702132 44.86449
## 1700 1700 -75.96466 4.145391 43.44236
## 1701 1701 -76.52760 3.218980 21.00341
## 1702 1702 -77.35428 3.305415 145.82671
## 1703 1703 -76.94426 4.276153 175.35638
## 1704 1704 -77.16368 4.706114 172.73512
## 1705 1705 -76.39684 3.491584 22.24933
## 1706 1706 -76.91324 3.533694 48.91808
## 1707 1707 -76.73593 3.657806 36.03261
## 1708 1708 -76.11094 4.515513 30.28234
## 1709 1709 -76.59409 4.300532 190.99368
## 1710 1710 -76.43895 4.134310 54.01231
## 1711 1711 -76.04445 3.777486 83.01643
## 1712 1712 -76.87113 3.850624 104.59799
## 1713 1713 -77.19914 3.571371 139.58018
## 1714 1714 -77.25898 4.531027 135.79312
## 1715 1715 -76.92653 3.595750 67.19160
## 1716 1716 -75.83833 3.267738 52.41676
## 1717 1717 -76.24613 4.209664 28.01715
## 1718 1718 -77.51607 3.094867 134.11867
## 1719 1719 -76.32148 4.473403 36.31524
## 1720 1720 -76.00899 4.586434 27.22951
## 1721 1721 -76.93983 4.943258 208.46503
## 1722 1722 -76.50322 4.655139 118.49464
## 1723 1723 -76.32148 3.693267 23.81113
## 1724 1724 -76.79577 5.042991 203.87561
## 1725 1725 -77.32768 4.081119 151.12668
## 1726 1726 -77.09940 4.701682 189.95255
## 1727 1727 -76.75145 3.110381 53.92775
## 1728 1728 -75.82503 3.183519 57.68266
## 1729 1729 -77.39417 4.258422 137.59312
## 1730 1730 -76.29932 4.442375 57.99891
## 1731 1731 -76.54090 4.601948 222.36685
## 1732 1732 -77.26119 3.533694 140.17128
## 1733 1733 -76.92875 3.972520 131.85774
## 1734 1734 -76.90437 4.533243 203.07596
## 1735 1735 -76.50100 4.788117 70.06249
## 1736 1736 -76.90437 5.007530 204.15898
## 1737 1737 -76.72042 3.622345 31.54759
## 1738 1738 -76.42787 3.473854 16.07617
## 1739 1739 -76.54090 3.917113 49.69585
## 1740 1740 -77.08389 4.511080 172.03865
## 1741 1741 -75.73417 5.025261 45.46551
## 1742 1742 -76.35695 4.513296 30.21714
## 1743 1743 -76.83567 4.796982 227.89445
## 1744 1744 -76.91324 3.883868 125.53410
## 1745 1745 -76.46998 4.960988 212.85262
## 1746 1746 -77.22130 4.901148 226.45757
## 1747 1747 -76.64063 4.094417 63.89802
## 1748 1748 -76.39684 4.406914 47.48383
Ahora generemos las muestras
m <- leaflet() %>%
addTiles() %>%
addMarkers(lng=sitios$longit,lat=sitios$latit, popup=sitios$soc, clusterOptions = markerClusterOptions())
m
La función sf::st_write() permite exportar un objeto espacial de R (como un conjunto de puntos, polígonos o líneas) a un archivo geoespacial estándar. En este caso, se utiliza para guardar las muestras de suelo generadas en formato GeoPackage (.gpkg), que es un tipo de archivo moderno, compacto y compatible con la mayoría de los programas SIG (como QGIS o ArcGIS).
Cambiamos la ruta y nombre para que se enlace a tus directorios, tambien el nombre de tu departamento
sf::st_write(nmuestras, "ValleDelCaucaDANE.gpkg", driver = "GPKG",
append=FALSE)
## Deleting layer `ValleDelCaucaDANE' using driver `GPKG'
## Writing layer `ValleDelCaucaDANE' to data source
## `ValleDelCaucaDANE.gpkg' using driver `GPKG'
## Writing 1748 features with 1 fields and geometry type Point.
Lizarazo, I. (2025). Cómo descargar datos de suelos desde SoilGrids. Disponible en: https://rpubs.com/ials2un/downloadSoilGrids
sessionInfo()
## R version 4.5.1 (2025-06-13 ucrt)
## Platform: x86_64-w64-mingw32/x64
## Running under: Windows 11 x64 (build 26200)
##
## Matrix products: default
## LAPACK version 3.12.1
##
## locale:
## [1] LC_COLLATE=Spanish_Colombia.utf8 LC_CTYPE=Spanish_Colombia.utf8
## [3] LC_MONETARY=Spanish_Colombia.utf8 LC_NUMERIC=C
## [5] LC_TIME=Spanish_Colombia.utf8
##
## time zone: America/Bogota
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] exactextractr_0.10.0 dplyr_1.1.4 XML_3.99-0.19
## [4] gdalUtilities_1.2.5 RColorBrewer_1.1-3 leaflet_2.2.3
## [7] sf_1.0-21 tidyterra_0.7.2 ggplot2_4.0.0
## [10] terra_1.8-80
##
## loaded via a namespace (and not attached):
## [1] s2_1.1.9 sass_0.4.10 generics_0.1.4
## [4] tidyr_1.3.1 class_7.3-23 KernSmooth_2.23-26
## [7] lattice_0.22-7 digest_0.6.37 magrittr_2.0.4
## [10] evaluate_1.0.5 grid_4.5.1 fastmap_1.2.0
## [13] jsonlite_2.0.0 e1071_1.7-16 DBI_1.2.3
## [16] purrr_1.1.0 crosstalk_1.2.2 scales_1.4.0
## [19] codetools_0.2-20 jquerylib_0.1.4 cli_3.6.5
## [22] rlang_1.1.6 units_1.0-0 withr_3.0.2
## [25] cachem_1.1.0 yaml_2.3.10 raster_3.6-32
## [28] tools_4.5.1 vctrs_0.6.5 R6_2.6.1
## [31] png_0.1-8 proxy_0.4-27 lifecycle_1.0.4
## [34] classInt_0.4-11 leaflet.providers_2.0.0 htmlwidgets_1.6.4
## [37] pkgconfig_2.0.3 pillar_1.11.1 bslib_0.9.0
## [40] gtable_0.3.6 glue_1.8.0 Rcpp_1.1.0
## [43] xfun_0.53 tibble_3.3.0 tidyselect_1.2.1
## [46] rstudioapi_0.17.1 knitr_1.50 farver_2.1.2
## [49] htmltools_0.5.8.1 rmarkdown_2.30 wk_0.9.4
## [52] compiler_4.5.1 S7_0.2.0 sp_2.2-0