You can download the plot data here:
Download
Plot Data (Excel)
You can download the environmental data here:
Download
Environmental Data (Excel)
PCA
|
|
PC1
|
PC2
|
score
|
label
|
|
Aga_cape
|
0.1186341
|
-0.0218525
|
species
|
Aga_cape
|
|
Ant_aeth
|
0.0104900
|
0.0453128
|
species
|
Ant_aeth
|
|
Asp_afri
|
-0.0249780
|
0.0186924
|
species
|
Asp_afri
|
|
Azi_tetr
|
-0.0164323
|
0.0198858
|
species
|
Azi_tetr
|
|
Bar_pung
|
0.0063820
|
-0.0014815
|
species
|
Bar_pung
|
|
Boo_dist
|
0.0045574
|
0.0098475
|
species
|
Boo_dist
|
|
Car_spar
|
-0.0350348
|
-0.0329295
|
species
|
Car_spar
|
|
Car_bisp
|
-0.0249780
|
0.0186924
|
species
|
Car_bisp
|
|
Clu_daph
|
-0.1623546
|
0.1090125
|
species
|
Clu_daph
|
|
Col_comp
|
-0.1983030
|
0.1992403
|
species
|
Col_comp
|
|
Cym_marg
|
-0.4712381
|
-0.5003549
|
species
|
Cym_marg
|
|
Dis_tort
|
0.0932882
|
0.0606470
|
species
|
Dis_tort
|
|
Dov_rotu
|
-0.1120850
|
0.1357606
|
species
|
Dov_rotu
|
|
Dis_seti
|
0.0331038
|
-0.1565603
|
species
|
Dis_seti
|
|
Era_curv
|
0.1300508
|
0.0282868
|
species
|
Era_curv
|
|
Euc_undu
|
-0.1107766
|
0.1238190
|
species
|
Euc_undu
|
|
Eur_algo
|
0.0116440
|
0.0020033
|
species
|
Eur_algo
|
|
Eur_eric
|
0.0123718
|
-0.0030315
|
species
|
Eur_eric
|
|
Fel_fili
|
-0.0022665
|
-0.0317583
|
species
|
Fel_fili
|
|
Fic_late
|
0.0065436
|
-0.0033477
|
species
|
Fic_late
|
|
Fic_trun
|
0.4280719
|
-0.2092695
|
species
|
Fic_trun
|
|
Gym_capi
|
-0.0363534
|
0.0225788
|
species
|
Gym_capi
|
|
Hel_anom
|
0.0221942
|
0.0073729
|
species
|
Hel_anom
|
|
Hel_cymo
|
0.0319014
|
-0.0026374
|
species
|
Hel_cymo
|
|
Her_flam
|
0.0096291
|
-0.0189322
|
species
|
Her_flam
|
|
Hip_pauc
|
-0.0578693
|
0.0500879
|
species
|
Hip_pauc
|
|
Ind_porr
|
0.0127000
|
0.0076678
|
species
|
Ind_porr
|
|
Jam_micr
|
-0.0053924
|
-0.0264957
|
species
|
Jam_micr
|
|
Lau_tetr
|
-0.0223454
|
0.0052876
|
species
|
Lau_tetr
|
|
Lob_trig
|
0.0207962
|
-0.0059061
|
species
|
Lob_trig
|
|
Mae_caff
|
-0.0532100
|
0.0351544
|
species
|
Mae_caff
|
|
Ole_exas
|
-0.0642643
|
0.0248362
|
species
|
Ole_exas
|
|
Ost_scab
|
0.0243123
|
0.0007468
|
species
|
Ost_scab
|
|
Pas_rubr
|
0.1962910
|
-0.2319630
|
species
|
Pas_rubr
|
|
Pod_myrt
|
-0.0564328
|
0.0683914
|
species
|
Pod_myrt
|
|
Pol_micr
|
0.0686235
|
-0.0970664
|
species
|
Pol_micr
|
|
Pte_tric
|
-0.3006325
|
0.2746575
|
species
|
Pte_tric
|
|
Pte_pani
|
0.0193440
|
0.0188524
|
species
|
Pte_pani
|
|
Put_pyra
|
-0.1637191
|
0.0981240
|
species
|
Put_pyra
|
|
Sch_afra
|
-0.0676126
|
0.0563993
|
species
|
Sch_afra
|
|
Sea_pall
|
-0.0668705
|
-0.0791962
|
species
|
Sea_pall
|
|
Sel_geni
|
-0.0380608
|
-0.0433429
|
species
|
Sel_geni
|
|
Sen_burc
|
-0.0842579
|
0.0338466
|
species
|
Sen_burc
|
|
Sen_inae
|
-0.0035324
|
0.0026435
|
species
|
Sen_inae
|
|
Sid_iner
|
-0.1574768
|
0.0620931
|
species
|
Sid_iner
|
|
Sis_orie
|
-0.0293672
|
-0.0988124
|
species
|
Sis_orie
|
|
The_tria
|
0.8764585
|
0.1216307
|
species
|
The_tria
|
|
Vac_karr
|
-0.0249780
|
0.0186924
|
species
|
Vac_karr
|
|
G1n5
|
0.2420689
|
-0.0561935
|
sites
|
G1n5
|
|
G1n4
|
0.1662573
|
-0.0510346
|
sites
|
G1n4
|
|
G1n3
|
0.2243607
|
0.0386002
|
sites
|
G1n3
|
|
G1n2
|
0.2205909
|
0.1862157
|
sites
|
G1n2
|
|
G1n1
|
0.2469985
|
0.1448449
|
sites
|
G1n1
|
|
F1n
|
0.0874978
|
0.3632506
|
sites
|
F1n
|
|
B1n
|
-0.6703550
|
0.5016617
|
sites
|
B1n
|
|
B1s
|
-0.6804867
|
0.4226454
|
sites
|
B1s
|
|
F1s
|
-0.6628453
|
-0.6986462
|
sites
|
F1s
|
|
G1s1
|
0.1790711
|
-0.0738208
|
sites
|
G1s1
|
|
G1s2
|
0.2216115
|
-0.0584462
|
sites
|
G1s2
|
|
G1s3
|
0.2471631
|
-0.0605628
|
sites
|
G1s3
|
|
G1s4
|
0.2547465
|
-0.0656206
|
sites
|
G1s4
|
|
G1s5
|
0.2633806
|
-0.0028368
|
sites
|
G1s5
|
|
G2n5
|
0.2060636
|
0.3266570
|
sites
|
G2n5
|
|
G2n4
|
0.1552351
|
0.3354256
|
sites
|
G2n4
|
|
G2n3
|
0.2133953
|
0.3021708
|
sites
|
G2n3
|
|
G2n2
|
0.2315323
|
0.2348850
|
sites
|
G2n2
|
|
G2n1
|
0.2615608
|
0.1813534
|
sites
|
G2n1
|
|
F2n
|
-0.5671543
|
-0.6716930
|
sites
|
F2n
|
|
B2n
|
-0.5558325
|
0.3672236
|
sites
|
B2n
|
|
B2s
|
-0.5601190
|
0.1079652
|
sites
|
B2s
|
|
F2s
|
-0.2537450
|
-0.2911828
|
sites
|
F2s
|
|
G2s1
|
0.1203599
|
-0.0012615
|
sites
|
G2s1
|
|
G2s2
|
0.2242799
|
-0.1007904
|
sites
|
G2s2
|
|
G2s3
|
0.2023928
|
-0.0555185
|
sites
|
G2s3
|
|
G2s4
|
0.1843694
|
-0.0151869
|
sites
|
G2s4
|
|
G2s5
|
0.2503849
|
-0.0268744
|
sites
|
G2s5
|
|
G3n5
|
0.1313302
|
0.0214222
|
sites
|
G3n5
|
|
G3n4
|
0.2243951
|
0.0705555
|
sites
|
G3n4
|
|
G3n3
|
0.1110158
|
0.0337829
|
sites
|
G3n3
|
|
G3n2
|
0.1594236
|
-0.1745597
|
sites
|
G3n2
|
|
G3n1
|
0.2697387
|
0.0136775
|
sites
|
G3n1
|
|
F3n
|
-0.5921542
|
-0.7623038
|
sites
|
F3n
|
|
B3n
|
-0.5970167
|
0.7239578
|
sites
|
B3n
|
|
B3s
|
-0.5976153
|
0.7232140
|
sites
|
B3s
|
|
F3s
|
-0.2561187
|
-0.7152527
|
sites
|
F3s
|
|
G3s1
|
0.0492077
|
-0.2315712
|
sites
|
G3s1
|
|
G3s2
|
-0.0754018
|
-0.5397700
|
sites
|
G3s2
|
|
G3s3
|
0.2541335
|
-0.1300131
|
sites
|
G3s3
|
|
G3s4
|
0.2216609
|
-0.1952019
|
sites
|
G3s4
|
|
G3s5
|
0.2446182
|
-0.1211673
|
sites
|
G3s5
|
Minimum and maximum axis values
|
score
|
axis
|
min
|
max
|
|
sites
|
PC1
|
-0.6804867
|
0.2697387
|
|
sites
|
PC2
|
-0.7623038
|
0.7239578
|
|
species
|
PC1
|
-0.4712381
|
0.8764585
|
|
species
|
PC2
|
-0.5003549
|
0.2746575
|
## Call: rda(X = .)
##
## Inertia Rank
## Total 0.566
## Unconstrained 0.566 36
## Inertia is variance
##
## Eigenvalues for unconstrained axes:
## PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8
## 0.17986 0.07226 0.05203 0.04293 0.04058 0.03114 0.02320 0.01990
## (Showing 8 of 36 unconstrained eigenvalues)
## [1] "===================Output from R - not scaled==================="
##
## ***VECTORS
##
## PC1 PC2 r2 Pr(>r)
## Depth -0.73125 0.68211 0.5140 0.001 ***
## Height -0.78671 0.61732 0.5428 0.001 ***
## I_above 0.97029 -0.24194 0.3143 0.003 **
## I_below 0.99764 0.06861 0.3424 0.001 ***
## Moisture -0.95985 0.28050 0.5651 0.001 ***
## Organic -0.89271 0.45062 0.7294 0.001 ***
## pH 0.99845 0.05567 0.4577 0.001 ***
## Slope -0.93476 -0.35528 0.3110 0.002 **
## Temp 0.97630 -0.21644 0.3673 0.001 ***
## LightInfiltration 0.99953 0.03053 0.3006 0.001 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## PC1 PC2
## CodeB1n -0.6704 0.5017
## CodeB1s -0.6805 0.4226
## CodeB2n -0.5558 0.3672
## CodeB2s -0.5601 0.1080
## CodeB3n -0.5970 0.7240
## CodeB3s -0.5976 0.7232
## CodeF1n 0.0875 0.3633
## CodeF1s -0.6628 -0.6986
## CodeF2n -0.5672 -0.6717
## CodeF2s -0.2537 -0.2912
## CodeF3n -0.5922 -0.7623
## CodeF3s -0.2561 -0.7153
## CodeG1n1 0.2470 0.1448
## CodeG1n2 0.2206 0.1862
## CodeG1n3 0.2244 0.0386
## CodeG1n4 0.1663 -0.0510
## CodeG1n5 0.2421 -0.0562
## CodeG1s1 0.1791 -0.0738
## CodeG1s2 0.2216 -0.0584
## CodeG1s3 0.2472 -0.0606
## CodeG1s4 0.2547 -0.0656
## CodeG1s5 0.2634 -0.0028
## CodeG2n1 0.2616 0.1814
## CodeG2n2 0.2315 0.2349
## CodeG2n3 0.2134 0.3022
## CodeG2n4 0.1552 0.3354
## CodeG2n5 0.2061 0.3267
## CodeG2s1 0.1204 -0.0013
## CodeG2s2 0.2243 -0.1008
## CodeG2s3 0.2024 -0.0555
## CodeG2s4 0.1844 -0.0152
## CodeG2s5 0.2504 -0.0269
## CodeG3n1 0.2697 0.0137
## CodeG3n2 0.1594 -0.1746
## CodeG3n3 0.1110 0.0338
## CodeG3n4 0.2244 0.0706
## CodeG3n5 0.1313 0.0214
## CodeG3s1 0.0492 -0.2316
## CodeG3s2 -0.0754 -0.5398
## CodeG3s3 0.2541 -0.1300
## CodeG3s4 0.2217 -0.1952
## CodeG3s5 0.2446 -0.1212
##
## Goodness of fit:
## r2 Pr(>r)
## Code 1 1
## Permutation: free
## Number of permutations: 999
DCA
|
|
DCA1
|
DCA2
|
DCA3
|
DCA4
|
score
|
label
|
weight
|
|
G1n5
|
-2.0922541
|
-0.4904539
|
-0.2340370
|
-0.1830068
|
sites
|
G1n5
|
62.0
|
|
G1n4
|
-2.1420180
|
-1.0312362
|
-0.3682278
|
0.4971988
|
sites
|
G1n4
|
86.0
|
|
G1n3
|
-2.0711557
|
-0.6812020
|
-0.2476967
|
-0.0140000
|
sites
|
G1n3
|
48.0
|
|
G1n2
|
-1.4694729
|
-0.7541612
|
-0.1467782
|
-0.2914491
|
sites
|
G1n2
|
35.1
|
|
G1n1
|
-1.8601567
|
-0.5635472
|
-0.4181234
|
-0.3494824
|
sites
|
G1n1
|
43.0
|
|
F1n
|
-0.9328448
|
-0.4704175
|
-0.3148670
|
-0.2537640
|
sites
|
F1n
|
54.0
|
|
B1n
|
2.8419738
|
0.2010105
|
0.1851202
|
0.2068652
|
sites
|
B1n
|
155.2
|
|
B1s
|
2.3056581
|
0.1486922
|
0.0588051
|
-0.5108008
|
sites
|
B1s
|
151.0
|
|
F1s
|
0.3729194
|
1.1001132
|
-1.3987368
|
0.1287177
|
sites
|
F1s
|
30.0
|
|
G1s1
|
-1.7589768
|
-0.9545081
|
-0.1437363
|
-0.2634674
|
sites
|
G1s1
|
81.0
|
|
G1s2
|
-1.5739720
|
-0.7404354
|
-0.3836106
|
-0.2283093
|
sites
|
G1s2
|
96.0
|
|
G1s3
|
-1.7758421
|
-0.6233298
|
-0.2209805
|
0.1251541
|
sites
|
G1s3
|
86.0
|
|
G1s4
|
-1.7372353
|
-0.6549640
|
-0.1692200
|
-0.0786154
|
sites
|
G1s4
|
71.0
|
|
G1s5
|
-1.6259389
|
-0.4525037
|
0.0227425
|
0.1816347
|
sites
|
G1s5
|
56.0
|
|
G2n5
|
-1.8806333
|
-0.2127773
|
-0.4347389
|
-0.1340097
|
sites
|
G2n5
|
50.2
|
|
G2n4
|
-2.2845222
|
-0.3229667
|
-0.7181977
|
-0.5849923
|
sites
|
G2n4
|
50.0
|
|
G2n3
|
-1.7368077
|
-0.0104407
|
-0.1331864
|
-0.0891973
|
sites
|
G2n3
|
46.0
|
|
G2n2
|
-1.6728740
|
-0.1806317
|
-0.3095598
|
0.1531342
|
sites
|
G2n2
|
52.0
|
|
G2n1
|
-1.7254745
|
-0.1840120
|
-0.2762058
|
0.0983446
|
sites
|
G2n1
|
49.0
|
|
F2n
|
0.1272038
|
-0.4932788
|
0.3495494
|
1.1329097
|
sites
|
F2n
|
31.0
|
|
B2n
|
4.3020706
|
0.2757236
|
0.2835518
|
-0.4088295
|
sites
|
B2n
|
188.1
|
|
B2s
|
4.3687910
|
0.5315751
|
0.5295427
|
-0.0993060
|
sites
|
B2s
|
143.0
|
|
F2s
|
-0.2162617
|
0.4918412
|
-0.2645526
|
-0.5229864
|
sites
|
F2s
|
27.1
|
|
G2s1
|
-0.8455930
|
-0.6968585
|
0.1917390
|
-0.3451791
|
sites
|
G2s1
|
42.0
|
|
G2s2
|
-1.9552290
|
0.1641967
|
0.1953748
|
0.2183101
|
sites
|
G2s2
|
50.0
|
|
G2s3
|
-1.9617108
|
0.4132890
|
0.2580345
|
0.5153067
|
sites
|
G2s3
|
55.0
|
|
G2s4
|
-2.1991059
|
0.0124892
|
0.2052261
|
-0.6249260
|
sites
|
G2s4
|
28.0
|
|
G2s5
|
-1.6440093
|
-0.0820482
|
-0.0650087
|
0.3032758
|
sites
|
G2s5
|
69.0
|
|
G3n5
|
-2.3482810
|
0.3807543
|
0.5054361
|
-0.7706874
|
sites
|
G3n5
|
43.0
|
|
G3n4
|
-2.0956785
|
-0.0018509
|
0.1938418
|
-0.3180050
|
sites
|
G3n4
|
40.0
|
|
G3n3
|
-2.1042779
|
0.7436410
|
0.9531200
|
-0.7646095
|
sites
|
G3n3
|
37.0
|
|
G3n2
|
-1.5918171
|
0.3735340
|
0.5931418
|
-0.1537689
|
sites
|
G3n2
|
52.0
|
|
G3n1
|
-1.6336274
|
-0.1570800
|
-0.0127782
|
0.0140981
|
sites
|
G3n1
|
53.0
|
|
F3n
|
0.1771725
|
0.7548420
|
-1.1930566
|
0.0134511
|
sites
|
F3n
|
55.0
|
|
B3n
|
3.7411192
|
0.3041847
|
0.1658949
|
0.6370717
|
sites
|
B3n
|
144.0
|
|
B3s
|
3.5652631
|
0.3532897
|
0.2764991
|
-0.4319056
|
sites
|
B3s
|
114.0
|
|
F3s
|
-1.0167136
|
0.4380169
|
0.1839855
|
0.5811526
|
sites
|
F3s
|
32.0
|
|
G3s1
|
-1.6738885
|
1.1030823
|
0.5955361
|
0.8742957
|
sites
|
G3s1
|
104.0
|
|
G3s2
|
-0.8760117
|
0.4548385
|
-0.5103237
|
0.3095754
|
sites
|
G3s2
|
107.0
|
|
G3s3
|
-1.7784449
|
-0.0946945
|
0.0270538
|
0.2179824
|
sites
|
G3s3
|
65.0
|
|
G3s4
|
-1.7420588
|
-0.1851754
|
0.0870722
|
0.1847015
|
sites
|
G3s4
|
63.0
|
|
G3s5
|
-1.6794861
|
-0.0268167
|
0.0531776
|
0.2803274
|
sites
|
G3s5
|
58.0
|
|
Aga_cape
|
-1.6521335
|
1.3007109
|
1.6987600
|
-1.4373222
|
species
|
Aga_cape
|
74.0
|
|
Ant_aeth
|
0.4258679
|
-1.7354173
|
1.0559895
|
-1.3847102
|
species
|
Ant_aeth
|
17.0
|
|
Asp_afri
|
2.7066107
|
0.3110897
|
0.3692433
|
1.2609227
|
species
|
Asp_afri
|
5.0
|
|
Azi_tetr
|
4.1444711
|
0.4821184
|
0.5134252
|
-3.9802277
|
species
|
Azi_tetr
|
2.0
|
|
Bar_pung
|
-3.7801881
|
-1.2509062
|
-2.7936143
|
-3.8373868
|
species
|
Bar_pung
|
1.0
|
|
Boo_dist
|
-4.0202245
|
-0.9155123
|
-2.5662872
|
-0.9012478
|
species
|
Boo_dist
|
1.0
|
|
Car_spar
|
1.7967174
|
1.2093792
|
1.0686915
|
1.4208988
|
species
|
Car_spar
|
7.0
|
|
Car_bisp
|
2.7066107
|
0.3110897
|
0.3692433
|
1.2609227
|
species
|
Car_bisp
|
5.0
|
|
Clu_daph
|
1.7771762
|
-0.2794871
|
-0.2252135
|
-1.2910223
|
species
|
Clu_daph
|
90.0
|
|
Col_comp
|
3.7344961
|
0.2721750
|
0.1011821
|
1.6248562
|
species
|
Col_comp
|
100.0
|
|
Cym_marg
|
0.3729194
|
1.1001132
|
-1.3987368
|
0.1287177
|
species
|
Cym_marg
|
162.1
|
|
Dis_tort
|
-3.4645018
|
-0.7618101
|
-1.4291095
|
-2.6119837
|
species
|
Dis_tort
|
38.2
|
|
Dov_rotu
|
4.2217298
|
0.3824527
|
0.2715297
|
-0.7887103
|
species
|
Dov_rotu
|
52.0
|
|
Dis_seti
|
-0.8956692
|
1.9898917
|
1.1984424
|
1.3938300
|
species
|
Dis_seti
|
66.0
|
|
Era_curv
|
-1.5441335
|
-2.3367118
|
-0.8993494
|
-1.0937587
|
species
|
Era_curv
|
70.0
|
|
Euc_undu
|
4.2924726
|
0.3291643
|
0.2049092
|
-0.8018938
|
species
|
Euc_undu
|
40.0
|
|
Eur_algo
|
-3.7946354
|
-2.0700782
|
-1.3369244
|
1.2151171
|
species
|
Eur_algo
|
3.0
|
|
Eur_eric
|
-3.3626992
|
-1.9591494
|
-1.2288051
|
1.4460571
|
species
|
Eur_eric
|
5.0
|
|
Fel_fili
|
-0.3179779
|
0.6151430
|
-0.1478727
|
1.3282684
|
species
|
Fel_fili
|
6.0
|
|
Fic_late
|
-3.2778097
|
0.8056940
|
0.5160403
|
0.9531537
|
species
|
Fic_late
|
1.0
|
|
Fic_trun
|
-2.3113452
|
-0.5846447
|
0.1606856
|
-0.0848158
|
species
|
Fic_trun
|
320.0
|
|
Gym_capi
|
2.1235998
|
0.3362157
|
0.3520546
|
-0.1182607
|
species
|
Gym_capi
|
10.0
|
|
Hel_anom
|
-3.7684541
|
0.1831511
|
0.7534311
|
-2.3473341
|
species
|
Hel_anom
|
4.1
|
|
Hel_cymo
|
-3.6738054
|
0.4759729
|
0.8497299
|
-1.5066384
|
species
|
Hel_cymo
|
8.0
|
|
Her_flam
|
-1.7937248
|
-2.2426641
|
-1.1610990
|
2.0074351
|
species
|
Her_flam
|
12.0
|
|
Hip_pauc
|
2.8367944
|
0.2992384
|
0.3173834
|
1.4092133
|
species
|
Hip_pauc
|
17.0
|
|
Ind_porr
|
-0.4473506
|
-2.0971986
|
-1.3257780
|
-1.3242770
|
species
|
Ind_porr
|
3.0
|
|
Jam_micr
|
-0.4382670
|
-2.2623781
|
1.7060792
|
1.0728996
|
species
|
Jam_micr
|
13.1
|
|
Lau_tetr
|
0.9636930
|
-1.3397767
|
1.0813925
|
-2.1843114
|
species
|
Lau_tetr
|
12.0
|
|
Lob_trig
|
-3.7797616
|
-2.8049896
|
-1.3236586
|
2.0026369
|
species
|
Lob_trig
|
16.0
|
|
Mae_caff
|
4.7806737
|
-0.0638850
|
-0.2536247
|
-1.1843138
|
species
|
Mae_caff
|
40.0
|
|
Ole_exas
|
4.6863813
|
0.5287812
|
0.6465048
|
-0.1142912
|
species
|
Ole_exas
|
25.0
|
|
Ost_scab
|
-3.8958185
|
1.6591374
|
1.9339935
|
-2.1254547
|
species
|
Ost_scab
|
11.0
|
|
Pas_rubr
|
-0.8897342
|
-0.8076633
|
0.1959852
|
0.4217890
|
species
|
Pas_rubr
|
153.0
|
|
Pod_myrt
|
4.3052633
|
0.2460428
|
-0.0351400
|
1.7490367
|
species
|
Pod_myrt
|
17.0
|
|
Pol_micr
|
-2.4992327
|
2.0935467
|
1.3042305
|
1.4483779
|
species
|
Pol_micr
|
71.0
|
|
Pte_tric
|
2.7938842
|
0.3608017
|
0.3461686
|
-0.4264846
|
species
|
Pte_tric
|
185.0
|
|
Pte_pani
|
-3.9784694
|
-0.5426138
|
-1.8775368
|
-1.8030268
|
species
|
Pte_pani
|
6.0
|
|
Put_pyra
|
3.6784020
|
0.2596215
|
0.2646142
|
0.1452149
|
species
|
Put_pyra
|
75.0
|
|
Sch_afra
|
3.4573222
|
0.1623006
|
0.0017541
|
1.0470257
|
species
|
Sch_afra
|
15.0
|
|
Sea_pall
|
0.1394555
|
-2.7834924
|
2.6283252
|
2.7001966
|
species
|
Sea_pall
|
10.0
|
|
Sel_geni
|
0.0497883
|
-0.7808135
|
-2.9945648
|
-2.9026142
|
species
|
Sel_geni
|
11.0
|
|
Sen_burc
|
4.6966136
|
0.4811509
|
0.5731353
|
-0.2542403
|
species
|
Sen_burc
|
43.0
|
|
Sen_inae
|
2.7066108
|
0.3110897
|
0.3692432
|
1.2609227
|
species
|
Sen_inae
|
0.1
|
|
Sid_iner
|
4.6916127
|
0.5043927
|
0.6099883
|
-0.1863423
|
species
|
Sid_iner
|
150.0
|
|
Sis_orie
|
-0.1945124
|
1.0908330
|
0.8648507
|
1.5990462
|
species
|
Sis_orie
|
15.1
|
|
The_tria
|
-1.7041996
|
-0.1555504
|
-0.3297816
|
0.1423880
|
species
|
The_tria
|
909.0
|
|
Vac_karr
|
2.7066107
|
0.3110897
|
0.3692433
|
1.2609227
|
species
|
Vac_karr
|
5.0
|
Minimum and maximum axis values
|
score
|
axis
|
min
|
max
|
|
sites
|
DCA1
|
-2.348281
|
4.368791
|
|
sites
|
DCA2
|
-1.031236
|
1.103082
|
|
species
|
DCA1
|
-4.020225
|
4.780674
|
|
species
|
DCA2
|
-2.804990
|
2.093547
|
##
## Call:
## decorana(veg = .)
##
## Detrended correspondence analysis with 26 segments.
## Rescaling of axes with 4 iterations.
## Total inertia (scaled Chi-square): 5.6216
##
## DCA1 DCA2 DCA3 DCA4
## Eigenvalues 0.9167 0.3618 0.2977 0.2225
## Additive Eigenvalues 0.9167 0.3144 0.2809 0.2225
## Decorana values 0.9499 0.3169 0.2340 0.1611
## Axis lengths 6.7171 2.1343 2.3519 1.9036
## [1] "===================Output from R - not scaled==================="
##
## ***VECTORS
##
## DCA1 DCA2 r2 Pr(>r)
## Depth 0.66629 -0.74569 0.4848 0.001 ***
## Height 0.59837 -0.80122 0.6310 0.001 ***
## I_above -0.79280 0.60948 0.3177 0.007 **
## I_below -0.72138 -0.69254 0.5098 0.001 ***
## Moisture 0.61898 0.78541 0.7671 0.001 ***
## Organic 0.94372 0.33073 0.8277 0.001 ***
## pH -0.89762 -0.44077 0.6674 0.001 ***
## Slope 0.63378 0.77352 0.3602 0.002 **
## Temp -0.74202 -0.67038 0.6487 0.001 ***
## LightInfiltration -0.68429 -0.72921 0.4958 0.001 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## DCA1 DCA2
## CodeB1n 2.8420 0.2010
## CodeB1s 2.3057 0.1487
## CodeB2n 4.3021 0.2757
## CodeB2s 4.3688 0.5316
## CodeB3n 3.7411 0.3042
## CodeB3s 3.5653 0.3533
## CodeF1n -0.9328 -0.4704
## CodeF1s 0.3729 1.1001
## CodeF2n 0.1272 -0.4933
## CodeF2s -0.2163 0.4918
## CodeF3n 0.1772 0.7548
## CodeF3s -1.0167 0.4380
## CodeG1n1 -1.8602 -0.5635
## CodeG1n2 -1.4695 -0.7542
## CodeG1n3 -2.0712 -0.6812
## CodeG1n4 -2.1420 -1.0312
## CodeG1n5 -2.0923 -0.4905
## CodeG1s1 -1.7590 -0.9545
## CodeG1s2 -1.5740 -0.7404
## CodeG1s3 -1.7758 -0.6233
## CodeG1s4 -1.7372 -0.6550
## CodeG1s5 -1.6259 -0.4525
## CodeG2n1 -1.7255 -0.1840
## CodeG2n2 -1.6729 -0.1806
## CodeG2n3 -1.7368 -0.0104
## CodeG2n4 -2.2845 -0.3230
## CodeG2n5 -1.8806 -0.2128
## CodeG2s1 -0.8456 -0.6969
## CodeG2s2 -1.9552 0.1642
## CodeG2s3 -1.9617 0.4133
## CodeG2s4 -2.1991 0.0125
## CodeG2s5 -1.6440 -0.0820
## CodeG3n1 -1.6336 -0.1571
## CodeG3n2 -1.5918 0.3735
## CodeG3n3 -2.1043 0.7436
## CodeG3n4 -2.0957 -0.0019
## CodeG3n5 -2.3483 0.3808
## CodeG3s1 -1.6739 1.1031
## CodeG3s2 -0.8760 0.4548
## CodeG3s3 -1.7784 -0.0947
## CodeG3s4 -1.7421 -0.1852
## CodeG3s5 -1.6795 -0.0268
##
## Goodness of fit:
## r2 Pr(>r)
## Code 1 1
## Permutation: free
## Number of permutations: 999
NMDS
|
|
NMDS1
|
NMDS2
|
score
|
label
|
|
G1n5
|
-0.5768397
|
-0.1148561
|
sites
|
G1n5
|
|
G1n4
|
-0.2115593
|
-0.3859573
|
sites
|
G1n4
|
|
G1n3
|
-0.4203783
|
-0.6052977
|
sites
|
G1n3
|
|
G1n2
|
-0.2843546
|
-0.5740272
|
sites
|
G1n2
|
|
G1n1
|
-0.3254563
|
-0.4370736
|
sites
|
G1n1
|
|
F1n
|
0.2202509
|
-0.7639089
|
sites
|
F1n
|
|
B1n
|
1.7694220
|
-0.4841408
|
sites
|
B1n
|
|
B1s
|
1.5635364
|
-0.2624023
|
sites
|
B1s
|
|
F1s
|
0.9368239
|
1.5997876
|
sites
|
F1s
|
|
G1s1
|
-0.2414500
|
-0.2270557
|
sites
|
G1s1
|
|
G1s2
|
-0.1785489
|
-0.1240405
|
sites
|
G1s2
|
|
G1s3
|
-0.2197041
|
-0.0990149
|
sites
|
G1s3
|
|
G1s4
|
-0.4039532
|
-0.1014225
|
sites
|
G1s4
|
|
G1s5
|
-0.4250946
|
0.0265284
|
sites
|
G1s5
|
|
G2n5
|
-1.3086178
|
0.1114466
|
sites
|
G2n5
|
|
G2n4
|
-1.3692171
|
-0.5044418
|
sites
|
G2n4
|
|
G2n3
|
-1.2248179
|
-0.1640139
|
sites
|
G2n3
|
|
G2n2
|
-0.9250607
|
0.4353231
|
sites
|
G2n2
|
|
G2n1
|
-0.8157853
|
0.2504481
|
sites
|
G2n1
|
|
F2n
|
0.1644760
|
1.0795335
|
sites
|
F2n
|
|
B2n
|
2.1084366
|
0.2987914
|
sites
|
B2n
|
|
B2s
|
1.9304004
|
0.7113685
|
sites
|
B2s
|
|
F2s
|
0.2812283
|
-0.2518086
|
sites
|
F2s
|
|
G2s1
|
0.0954614
|
-0.1233131
|
sites
|
G2s1
|
|
G2s2
|
-0.5499843
|
-0.0280215
|
sites
|
G2s2
|
|
G2s3
|
-0.5014269
|
0.3082864
|
sites
|
G2s3
|
|
G2s4
|
-0.9729425
|
-0.1739362
|
sites
|
G2s4
|
|
G2s5
|
-0.5332843
|
0.2846948
|
sites
|
G2s5
|
|
G3n5
|
-0.8269332
|
-0.4944714
|
sites
|
G3n5
|
|
G3n4
|
-0.7797054
|
-0.3446235
|
sites
|
G3n4
|
|
G3n3
|
-0.7400452
|
-0.5551930
|
sites
|
G3n3
|
|
G3n2
|
-0.3978617
|
0.1501889
|
sites
|
G3n2
|
|
G3n1
|
-0.6153904
|
0.0266132
|
sites
|
G3n1
|
|
F3n
|
0.3186637
|
0.9892318
|
sites
|
F3n
|
|
B3n
|
3.2989150
|
-0.4906808
|
sites
|
B3n
|
|
B3s
|
3.6991927
|
-0.6496791
|
sites
|
B3s
|
|
F3s
|
0.2094522
|
0.4192980
|
sites
|
F3s
|
|
G3s1
|
-0.2458325
|
0.3191888
|
sites
|
G3s1
|
|
G3s2
|
-0.1528043
|
0.2894106
|
sites
|
G3s2
|
|
G3s3
|
-0.3840269
|
0.2973157
|
sites
|
G3s3
|
|
G3s4
|
-0.4251577
|
0.2088863
|
sites
|
G3s4
|
|
G3s5
|
-0.5400265
|
0.1530386
|
sites
|
G3s5
|
|
Aga_cape
|
-0.6703796
|
-0.2886763
|
species
|
Aga_cape
|
|
Ant_aeth
|
0.1516482
|
-0.5610717
|
species
|
Ant_aeth
|
|
Asp_afri
|
1.8953203
|
-0.6534989
|
species
|
Asp_afri
|
|
Azi_tetr
|
3.9623985
|
-0.8769445
|
species
|
Azi_tetr
|
|
Bar_pung
|
-0.6178831
|
-0.1550341
|
species
|
Bar_pung
|
|
Boo_dist
|
-1.4666400
|
-0.6809014
|
species
|
Boo_dist
|
|
Car_spar
|
1.2442446
|
0.7840931
|
species
|
Car_spar
|
|
Car_bisp
|
1.8953203
|
-0.6534989
|
species
|
Car_bisp
|
|
Clu_daph
|
1.0612561
|
-0.3908856
|
species
|
Clu_daph
|
|
Col_comp
|
3.1256329
|
-0.6756339
|
species
|
Col_comp
|
|
Cym_marg
|
0.6786986
|
1.3066732
|
species
|
Cym_marg
|
|
Dis_tort
|
-0.9314289
|
-0.3034325
|
species
|
Dis_tort
|
|
Dov_rotu
|
3.7864921
|
-0.7888933
|
species
|
Dov_rotu
|
|
Dis_seti
|
-0.3087393
|
0.3516257
|
species
|
Dis_seti
|
|
Era_curv
|
-0.2700564
|
-0.4916671
|
species
|
Era_curv
|
|
Euc_undu
|
3.5297705
|
-0.5888655
|
species
|
Euc_undu
|
|
Eur_algo
|
-0.4502891
|
-0.8170379
|
species
|
Eur_algo
|
|
Eur_eric
|
-0.2353366
|
-0.1336515
|
species
|
Eur_eric
|
|
Fel_fili
|
0.0200955
|
-0.2045666
|
species
|
Fel_fili
|
|
Fic_late
|
-0.4113513
|
0.4013201
|
species
|
Fic_late
|
|
Fic_trun
|
-0.4508378
|
-0.0993722
|
species
|
Fic_trun
|
|
Gym_capi
|
1.6747855
|
-0.3541937
|
species
|
Gym_capi
|
|
Hel_anom
|
-1.0206488
|
0.0781804
|
species
|
Hel_anom
|
|
Hel_cymo
|
-0.7739801
|
-0.2306103
|
species
|
Hel_cymo
|
|
Her_flam
|
-0.2027215
|
-0.1749137
|
species
|
Her_flam
|
|
Hip_pauc
|
2.5203424
|
-0.6568667
|
species
|
Hip_pauc
|
|
Ind_porr
|
-0.0393472
|
-0.4921374
|
species
|
Ind_porr
|
|
Jam_micr
|
-0.1231204
|
0.1584228
|
species
|
Jam_micr
|
|
Lau_tetr
|
0.4190508
|
-0.3186261
|
species
|
Lau_tetr
|
|
Lob_trig
|
-0.3299987
|
-0.4242775
|
species
|
Lob_trig
|
|
Mae_caff
|
2.2584565
|
0.4033121
|
species
|
Mae_caff
|
|
Ole_exas
|
2.1390444
|
0.7520242
|
species
|
Ole_exas
|
|
Ost_scab
|
-0.7746005
|
-0.5558488
|
species
|
Ost_scab
|
|
Pas_rubr
|
-0.4084036
|
0.1957366
|
species
|
Pas_rubr
|
|
Pod_myrt
|
3.6665958
|
-0.7288785
|
species
|
Pod_myrt
|
|
Pol_micr
|
-0.4596950
|
0.1924506
|
species
|
Pol_micr
|
|
Pte_tric
|
2.8952245
|
-0.6472525
|
species
|
Pte_tric
|
|
Pte_pani
|
-1.2948727
|
-0.5003733
|
species
|
Pte_pani
|
|
Put_pyra
|
2.0356804
|
0.1912635
|
species
|
Put_pyra
|
|
Sch_afra
|
2.5459119
|
-0.2317353
|
species
|
Sch_afra
|
|
Sea_pall
|
0.1761788
|
1.4571669
|
species
|
Sea_pall
|
|
Sel_geni
|
0.3370089
|
0.6168206
|
species
|
Sel_geni
|
|
Sen_burc
|
2.1450671
|
0.7344366
|
species
|
Sen_burc
|
|
Sen_inae
|
1.8953203
|
-0.6534989
|
species
|
Sen_inae
|
|
Sid_iner
|
2.1421323
|
0.7430069
|
species
|
Sid_iner
|
|
Sis_orie
|
-0.2689381
|
0.7043444
|
species
|
Sis_orie
|
|
The_tria
|
-0.6596675
|
-0.0291814
|
species
|
The_tria
|
|
Vac_karr
|
1.8953203
|
-0.6534989
|
species
|
Vac_karr
|
Minimum and maximum axis values
|
score
|
axis
|
min
|
max
|
|
sites
|
NMDS1
|
-1.3692171
|
3.699193
|
|
sites
|
NMDS2
|
-0.7639089
|
1.599788
|
|
species
|
NMDS1
|
-1.4666400
|
3.962398
|
|
species
|
NMDS2
|
-0.8769445
|
1.457167
|
##
## Call:
## metaMDS(comm = vegW, k = 2, try = 50, trymax = 1000, trace = 0)
##
## global Multidimensional Scaling using monoMDS
##
## Data: wisconsin(sqrt(vegW))
## Distance: bray
##
## Dimensions: 2
## Stress: 0.106417
## Stress type 1, weak ties
## Best solution was repeated 8 times in 50 tries
## The best solution was from try 16 (random start)
## Scaling: centring, PC rotation, halfchange scaling
## Species: expanded scores based on 'wisconsin(sqrt(vegW))'
## [1] "===================Output from R - not scaled==================="
##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## Depth 0.70116 -0.71300 0.3845 0.001 ***
## Height 0.83232 -0.55430 0.4880 0.001 ***
## I_above -0.99558 -0.09387 0.2253 0.017 *
## I_below -0.83844 -0.54499 0.3173 0.002 **
## Moisture 0.86240 0.50623 0.6026 0.001 ***
## Organic 0.98497 0.17274 0.7073 0.001 ***
## pH -0.80826 -0.58882 0.4678 0.001 ***
## Slope 0.52960 0.84825 0.2511 0.008 **
## Temp -0.76202 -0.64755 0.4482 0.001 ***
## LightInfiltration -0.85894 -0.51207 0.2913 0.003 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## CodeB1n 1.7694 -0.4841
## CodeB1s 1.5635 -0.2624
## CodeB2n 2.1084 0.2988
## CodeB2s 1.9304 0.7114
## CodeB3n 3.2989 -0.4907
## CodeB3s 3.6992 -0.6497
## CodeF1n 0.2203 -0.7639
## CodeF1s 0.9368 1.5998
## CodeF2n 0.1645 1.0795
## CodeF2s 0.2812 -0.2518
## CodeF3n 0.3187 0.9892
## CodeF3s 0.2095 0.4193
## CodeG1n1 -0.3255 -0.4371
## CodeG1n2 -0.2844 -0.5740
## CodeG1n3 -0.4204 -0.6053
## CodeG1n4 -0.2116 -0.3860
## CodeG1n5 -0.5768 -0.1149
## CodeG1s1 -0.2414 -0.2271
## CodeG1s2 -0.1785 -0.1240
## CodeG1s3 -0.2197 -0.0990
## CodeG1s4 -0.4040 -0.1014
## CodeG1s5 -0.4251 0.0265
## CodeG2n1 -0.8158 0.2504
## CodeG2n2 -0.9251 0.4353
## CodeG2n3 -1.2248 -0.1640
## CodeG2n4 -1.3692 -0.5044
## CodeG2n5 -1.3086 0.1114
## CodeG2s1 0.0955 -0.1233
## CodeG2s2 -0.5500 -0.0280
## CodeG2s3 -0.5014 0.3083
## CodeG2s4 -0.9729 -0.1739
## CodeG2s5 -0.5333 0.2847
## CodeG3n1 -0.6154 0.0266
## CodeG3n2 -0.3979 0.1502
## CodeG3n3 -0.7400 -0.5552
## CodeG3n4 -0.7797 -0.3446
## CodeG3n5 -0.8269 -0.4945
## CodeG3s1 -0.2458 0.3192
## CodeG3s2 -0.1528 0.2894
## CodeG3s3 -0.3840 0.2973
## CodeG3s4 -0.4252 0.2089
## CodeG3s5 -0.5400 0.1530
##
## Goodness of fit:
## r2 Pr(>r)
## Code 1 1
## Permutation: free
## Number of permutations: 999