Qiu lab work @UA COM-Phoenix. Analysis Credit: Dr. Peng Chen


Cell Segmentation in Visium HD dataset using spaceranger 4.0 (Released in May 2025)
Visium HD PFC tissue layout with HE staining



Visium HD PFC tissue cell segmentation
Visium HD PFC tissue cell segmentation

Visium HD PFC cell segmentation with selected features
Visium HD PFC cell segmentation with selected features



PFC tissues arrayed on A1 chip - Web Summary - metrics

Web Summary - metrics


PFC tissues arrayed on A1 chip - Web Summary - additonal metrics

Web Summary - metrics


Cell segmentation using spaceranger 4.0

PFC tissue section_Zoom


Cell segmentation using spaceranger 4.0, Zoomed region overlaid on tissue
PFC tissue section_Zoom with tissue images




Cell segmentation and clustering using 2 micron bins

PFC tissue section_Zoom_2


Cell segmentation using spaceranger 4.0, Zoomed region overlaid on tissue
PFC tissue section_Zoom_2 with tissue image