Welcome

Ch1 Introduction

The data science project workflow

Prerequisites

  • R
  • RStudio
  • r packages

Install the tidyverse package

Running R code

1+2
## [1] 3

Getting help

  • Google
  • Stackoverflow

Ch2 Introduction to Data Exploration

Ch3 Data Visualization

Set up

library(tidyverse)

data

mpg
## # A tibble: 234 × 11
##    manufacturer model      displ  year   cyl trans drv     cty   hwy fl    class
##    <chr>        <chr>      <dbl> <int> <int> <chr> <chr> <int> <int> <chr> <chr>
##  1 audi         a4           1.8  1999     4 auto… f        18    29 p     comp…
##  2 audi         a4           1.8  1999     4 manu… f        21    29 p     comp…
##  3 audi         a4           2    2008     4 manu… f        20    31 p     comp…
##  4 audi         a4           2    2008     4 auto… f        21    30 p     comp…
##  5 audi         a4           2.8  1999     6 auto… f        16    26 p     comp…
##  6 audi         a4           2.8  1999     6 manu… f        18    26 p     comp…
##  7 audi         a4           3.1  2008     6 auto… f        18    27 p     comp…
##  8 audi         a4 quattro   1.8  1999     4 manu… 4        18    26 p     comp…
##  9 audi         a4 quattro   1.8  1999     4 auto… 4        16    25 p     comp…
## 10 audi         a4 quattro   2    2008     4 manu… 4        20    28 p     comp…
## # ℹ 224 more rows

aesthetics

  • x
  • y
  • color
  • size
  • alpha
  • shape
ggplot(data = mpg) + 
  geom_point(mapping = aes(x = displ, y = hwy, color = class))

common problems

  • Sometimes you’ll run the code and nothing happens.
  • Putting the + in the wrong place.

How to get help

  • ? function name
  • Select the function name and press F1
  • Read the error message
  • Google the error message

facets

ggplot(data = mpg) + 
  geom_point(mapping = aes(x = displ, y = hwy)) + 
  facet_wrap(~ class, nrow = 2)

geometric objects

different visual object to represent data

# left
ggplot(data = mpg) + 
  geom_point(mapping = aes(x = displ, y = hwy))

# right
ggplot(data = mpg) + 
  geom_smooth(mapping = aes(x = displ, y = hwy))

not every aesthetic works with every geom

ggplot(data = mpg) + 
  geom_smooth(mapping = aes(x = displ, y = hwy, linetype = drv))

two geoms in the same graph!

ggplot(data = mpg, mapping = aes(x = displ, y = hwy)) + 
  geom_point(mapping = aes(color = class)) + 
  geom_smooth()

local vs. global mappings This makes it possible to display different aesthetics in different layers.

ggplot(data = mpg, mapping = aes(x = displ, y = hwy)) + 
  geom_point(mapping = aes(color = class)) + 
  geom_smooth(data = filter(mpg, class == "subcompact"), se = FALSE)

specify different data for each layer

statistical transformation

ggplot(data = diamonds) + 
  geom_bar(mapping = aes(x = cut))

demo <- tribble(
  ~cut,         ~freq,
  "Fair",       1610,
  "Good",       4906,
  "Very Good",  12082,
  "Premium",    13791,
  "Ideal",      21551
)

ggplot(data = demo) +
  geom_bar(mapping = aes(x = cut, y = freq), stat = "identity")

ggplot(data = diamonds) + 
  stat_summary(
    mapping = aes(x = cut, y = depth),
    fun.min = min,
    fun.max = max,
    fun = median
  )

position adjustments

ggplot(data = diamonds) + 
  geom_bar(mapping = aes(x = cut, colour = cut))

ggplot(data = diamonds) + 
  geom_bar(mapping = aes(x = cut, fill = cut))

adjustments for bar charts

ggplot(data = diamonds) + 
  geom_bar(mapping = aes(x = cut, fill = clarity))

adjustments for scatterplots

ggplot(data = mpg) + 
  geom_point(mapping = aes(x = displ, y = hwy), position = "jitter")

coordinate systems

switch x and y

ggplot(data = mpg, mapping = aes(x = class, y = hwy)) + 
  geom_boxplot()

ggplot(data = mpg, mapping = aes(x = class, y = hwy)) + 
  geom_boxplot() +
  coord_flip()

set the aspect ratio correctly for maps

Polar coordinates reveal an interesting connection between a bar chart and a Coxcomb chart.

the layered grammar of graphics

The grammar of graphics is based on the insight that you can uniquely describe any plot as a combination of:

  • a dataset,
  • a geom,
  • a set of mappings,
  • a stat,
  • a position adjustment,
  • a coordinate system, and
  • a faceting scheme.