Contexto

Estos datos son el resultado de un análisis químico de vinos cultivados en la misma región de Italia, pero derivados de tres cultivares diferentes. El análisis determinó las cantidades de 13 componentes que se encuentran en cada uno de los tres cultivares.

Paso 1. Instalar paquetes y llamar librerías

#install.packages("cluster") #Agrupamiento
library(cluster)
#install.packages("ggplot2") #Graficar
library(ggplot2)
#install.packages("data.table") #Manejo de muchos datos
library(data.table)
#install.packages("factoextra") #Grafica de optimización de numero de clusters
library(factoextra)
## Welcome! Want to learn more? See two factoextra-related books at https://goo.gl/ve3WBa

Paso 2. Obtener los datos

df1 <- read.csv("/Users/miguel/Desktop/wine.csv")
df1
##     Alcohol Malic_Acid  Ash Ash_Alcanity Magnesium Total_Phenols Flavanoids
## 1     14.23       1.71 2.43         15.6       127          2.80       3.06
## 2     13.20       1.78 2.14         11.2       100          2.65       2.76
## 3     13.16       2.36 2.67         18.6       101          2.80       3.24
## 4     14.37       1.95 2.50         16.8       113          3.85       3.49
## 5     13.24       2.59 2.87         21.0       118          2.80       2.69
## 6     14.20       1.76 2.45         15.2       112          3.27       3.39
## 7     14.39       1.87 2.45         14.6        96          2.50       2.52
## 8     14.06       2.15 2.61         17.6       121          2.60       2.51
## 9     14.83       1.64 2.17         14.0        97          2.80       2.98
## 10    13.86       1.35 2.27         16.0        98          2.98       3.15
## 11    14.10       2.16 2.30         18.0       105          2.95       3.32
## 12    14.12       1.48 2.32         16.8        95          2.20       2.43
## 13    13.75       1.73 2.41         16.0        89          2.60       2.76
## 14    14.75       1.73 2.39         11.4        91          3.10       3.69
## 15    14.38       1.87 2.38         12.0       102          3.30       3.64
## 16    13.63       1.81 2.70         17.2       112          2.85       2.91
## 17    14.30       1.92 2.72         20.0       120          2.80       3.14
## 18    13.83       1.57 2.62         20.0       115          2.95       3.40
## 19    14.19       1.59 2.48         16.5       108          3.30       3.93
## 20    13.64       3.10 2.56         15.2       116          2.70       3.03
## 21    14.06       1.63 2.28         16.0       126          3.00       3.17
## 22    12.93       3.80 2.65         18.6       102          2.41       2.41
## 23    13.71       1.86 2.36         16.6       101          2.61       2.88
## 24    12.85       1.60 2.52         17.8        95          2.48       2.37
## 25    13.50       1.81 2.61         20.0        96          2.53       2.61
## 26    13.05       2.05 3.22         25.0       124          2.63       2.68
## 27    13.39       1.77 2.62         16.1        93          2.85       2.94
## 28    13.30       1.72 2.14         17.0        94          2.40       2.19
## 29    13.87       1.90 2.80         19.4       107          2.95       2.97
## 30    14.02       1.68 2.21         16.0        96          2.65       2.33
## 31    13.73       1.50 2.70         22.5       101          3.00       3.25
## 32    13.58       1.66 2.36         19.1       106          2.86       3.19
## 33    13.68       1.83 2.36         17.2       104          2.42       2.69
## 34    13.76       1.53 2.70         19.5       132          2.95       2.74
## 35    13.51       1.80 2.65         19.0       110          2.35       2.53
## 36    13.48       1.81 2.41         20.5       100          2.70       2.98
## 37    13.28       1.64 2.84         15.5       110          2.60       2.68
## 38    13.05       1.65 2.55         18.0        98          2.45       2.43
## 39    13.07       1.50 2.10         15.5        98          2.40       2.64
## 40    14.22       3.99 2.51         13.2       128          3.00       3.04
## 41    13.56       1.71 2.31         16.2       117          3.15       3.29
## 42    13.41       3.84 2.12         18.8        90          2.45       2.68
## 43    13.88       1.89 2.59         15.0       101          3.25       3.56
## 44    13.24       3.98 2.29         17.5       103          2.64       2.63
## 45    13.05       1.77 2.10         17.0       107          3.00       3.00
## 46    14.21       4.04 2.44         18.9       111          2.85       2.65
## 47    14.38       3.59 2.28         16.0       102          3.25       3.17
## 48    13.90       1.68 2.12         16.0       101          3.10       3.39
## 49    14.10       2.02 2.40         18.8       103          2.75       2.92
## 50    13.94       1.73 2.27         17.4       108          2.88       3.54
## 51    13.05       1.73 2.04         12.4        92          2.72       3.27
## 52    13.83       1.65 2.60         17.2        94          2.45       2.99
## 53    13.82       1.75 2.42         14.0       111          3.88       3.74
## 54    13.77       1.90 2.68         17.1       115          3.00       2.79
## 55    13.74       1.67 2.25         16.4       118          2.60       2.90
## 56    13.56       1.73 2.46         20.5       116          2.96       2.78
## 57    14.22       1.70 2.30         16.3       118          3.20       3.00
## 58    13.29       1.97 2.68         16.8       102          3.00       3.23
## 59    13.72       1.43 2.50         16.7       108          3.40       3.67
## 60    12.37       0.94 1.36         10.6        88          1.98       0.57
## 61    12.33       1.10 2.28         16.0       101          2.05       1.09
## 62    12.64       1.36 2.02         16.8       100          2.02       1.41
## 63    13.67       1.25 1.92         18.0        94          2.10       1.79
## 64    12.37       1.13 2.16         19.0        87          3.50       3.10
## 65    12.17       1.45 2.53         19.0       104          1.89       1.75
## 66    12.37       1.21 2.56         18.1        98          2.42       2.65
## 67    13.11       1.01 1.70         15.0        78          2.98       3.18
## 68    12.37       1.17 1.92         19.6        78          2.11       2.00
## 69    13.34       0.94 2.36         17.0       110          2.53       1.30
## 70    12.21       1.19 1.75         16.8       151          1.85       1.28
## 71    12.29       1.61 2.21         20.4       103          1.10       1.02
## 72    13.86       1.51 2.67         25.0        86          2.95       2.86
## 73    13.49       1.66 2.24         24.0        87          1.88       1.84
## 74    12.99       1.67 2.60         30.0       139          3.30       2.89
## 75    11.96       1.09 2.30         21.0       101          3.38       2.14
## 76    11.66       1.88 1.92         16.0        97          1.61       1.57
## 77    13.03       0.90 1.71         16.0        86          1.95       2.03
## 78    11.84       2.89 2.23         18.0       112          1.72       1.32
## 79    12.33       0.99 1.95         14.8       136          1.90       1.85
## 80    12.70       3.87 2.40         23.0       101          2.83       2.55
## 81    12.00       0.92 2.00         19.0        86          2.42       2.26
## 82    12.72       1.81 2.20         18.8        86          2.20       2.53
## 83    12.08       1.13 2.51         24.0        78          2.00       1.58
## 84    13.05       3.86 2.32         22.5        85          1.65       1.59
## 85    11.84       0.89 2.58         18.0        94          2.20       2.21
## 86    12.67       0.98 2.24         18.0        99          2.20       1.94
## 87    12.16       1.61 2.31         22.8        90          1.78       1.69
## 88    11.65       1.67 2.62         26.0        88          1.92       1.61
## 89    11.64       2.06 2.46         21.6        84          1.95       1.69
## 90    12.08       1.33 2.30         23.6        70          2.20       1.59
## 91    12.08       1.83 2.32         18.5        81          1.60       1.50
## 92    12.00       1.51 2.42         22.0        86          1.45       1.25
## 93    12.69       1.53 2.26         20.7        80          1.38       1.46
## 94    12.29       2.83 2.22         18.0        88          2.45       2.25
## 95    11.62       1.99 2.28         18.0        98          3.02       2.26
## 96    12.47       1.52 2.20         19.0       162          2.50       2.27
## 97    11.81       2.12 2.74         21.5       134          1.60       0.99
## 98    12.29       1.41 1.98         16.0        85          2.55       2.50
## 99    12.37       1.07 2.10         18.5        88          3.52       3.75
## 100   12.29       3.17 2.21         18.0        88          2.85       2.99
## 101   12.08       2.08 1.70         17.5        97          2.23       2.17
## 102   12.60       1.34 1.90         18.5        88          1.45       1.36
## 103   12.34       2.45 2.46         21.0        98          2.56       2.11
## 104   11.82       1.72 1.88         19.5        86          2.50       1.64
## 105   12.51       1.73 1.98         20.5        85          2.20       1.92
## 106   12.42       2.55 2.27         22.0        90          1.68       1.84
## 107   12.25       1.73 2.12         19.0        80          1.65       2.03
## 108   12.72       1.75 2.28         22.5        84          1.38       1.76
## 109   12.22       1.29 1.94         19.0        92          2.36       2.04
## 110   11.61       1.35 2.70         20.0        94          2.74       2.92
## 111   11.46       3.74 1.82         19.5       107          3.18       2.58
## 112   12.52       2.43 2.17         21.0        88          2.55       2.27
## 113   11.76       2.68 2.92         20.0       103          1.75       2.03
## 114   11.41       0.74 2.50         21.0        88          2.48       2.01
## 115   12.08       1.39 2.50         22.5        84          2.56       2.29
## 116   11.03       1.51 2.20         21.5        85          2.46       2.17
## 117   11.82       1.47 1.99         20.8        86          1.98       1.60
## 118   12.42       1.61 2.19         22.5       108          2.00       2.09
## 119   12.77       3.43 1.98         16.0        80          1.63       1.25
## 120   12.00       3.43 2.00         19.0        87          2.00       1.64
## 121   11.45       2.40 2.42         20.0        96          2.90       2.79
## 122   11.56       2.05 3.23         28.5       119          3.18       5.08
## 123   12.42       4.43 2.73         26.5       102          2.20       2.13
## 124   13.05       5.80 2.13         21.5        86          2.62       2.65
## 125   11.87       4.31 2.39         21.0        82          2.86       3.03
## 126   12.07       2.16 2.17         21.0        85          2.60       2.65
## 127   12.43       1.53 2.29         21.5        86          2.74       3.15
## 128   11.79       2.13 2.78         28.5        92          2.13       2.24
## 129   12.37       1.63 2.30         24.5        88          2.22       2.45
## 130   12.04       4.30 2.38         22.0        80          2.10       1.75
## 131   12.86       1.35 2.32         18.0       122          1.51       1.25
## 132   12.88       2.99 2.40         20.0       104          1.30       1.22
## 133   12.81       2.31 2.40         24.0        98          1.15       1.09
## 134   12.70       3.55 2.36         21.5       106          1.70       1.20
## 135   12.51       1.24 2.25         17.5        85          2.00       0.58
## 136   12.60       2.46 2.20         18.5        94          1.62       0.66
## 137   12.25       4.72 2.54         21.0        89          1.38       0.47
## 138   12.53       5.51 2.64         25.0        96          1.79       0.60
## 139   13.49       3.59 2.19         19.5        88          1.62       0.48
## 140   12.84       2.96 2.61         24.0       101          2.32       0.60
## 141   12.93       2.81 2.70         21.0        96          1.54       0.50
## 142   13.36       2.56 2.35         20.0        89          1.40       0.50
## 143   13.52       3.17 2.72         23.5        97          1.55       0.52
## 144   13.62       4.95 2.35         20.0        92          2.00       0.80
## 145   12.25       3.88 2.20         18.5       112          1.38       0.78
## 146   13.16       3.57 2.15         21.0       102          1.50       0.55
## 147   13.88       5.04 2.23         20.0        80          0.98       0.34
## 148   12.87       4.61 2.48         21.5        86          1.70       0.65
## 149   13.32       3.24 2.38         21.5        92          1.93       0.76
## 150   13.08       3.90 2.36         21.5       113          1.41       1.39
## 151   13.50       3.12 2.62         24.0       123          1.40       1.57
## 152   12.79       2.67 2.48         22.0       112          1.48       1.36
## 153   13.11       1.90 2.75         25.5       116          2.20       1.28
## 154   13.23       3.30 2.28         18.5        98          1.80       0.83
## 155   12.58       1.29 2.10         20.0       103          1.48       0.58
## 156   13.17       5.19 2.32         22.0        93          1.74       0.63
## 157   13.84       4.12 2.38         19.5        89          1.80       0.83
## 158   12.45       3.03 2.64         27.0        97          1.90       0.58
## 159   14.34       1.68 2.70         25.0        98          2.80       1.31
## 160   13.48       1.67 2.64         22.5        89          2.60       1.10
## 161   12.36       3.83 2.38         21.0        88          2.30       0.92
## 162   13.69       3.26 2.54         20.0       107          1.83       0.56
## 163   12.85       3.27 2.58         22.0       106          1.65       0.60
## 164   12.96       3.45 2.35         18.5       106          1.39       0.70
## 165   13.78       2.76 2.30         22.0        90          1.35       0.68
## 166   13.73       4.36 2.26         22.5        88          1.28       0.47
## 167   13.45       3.70 2.60         23.0       111          1.70       0.92
## 168   12.82       3.37 2.30         19.5        88          1.48       0.66
## 169   13.58       2.58 2.69         24.5       105          1.55       0.84
## 170   13.40       4.60 2.86         25.0       112          1.98       0.96
## 171   12.20       3.03 2.32         19.0        96          1.25       0.49
## 172   12.77       2.39 2.28         19.5        86          1.39       0.51
## 173   14.16       2.51 2.48         20.0        91          1.68       0.70
## 174   13.71       5.65 2.45         20.5        95          1.68       0.61
## 175   13.40       3.91 2.48         23.0       102          1.80       0.75
## 176   13.27       4.28 2.26         20.0       120          1.59       0.69
## 177   13.17       2.59 2.37         20.0       120          1.65       0.68
## 178   14.13       4.10 2.74         24.5        96          2.05       0.76
##     Nonflavanoid_Phenols Proanthocyanins Color_Intensity   Hue OD280 Proline
## 1                   0.28            2.29        5.640000 1.040  3.92    1065
## 2                   0.26            1.28        4.380000 1.050  3.40    1050
## 3                   0.30            2.81        5.680000 1.030  3.17    1185
## 4                   0.24            2.18        7.800000 0.860  3.45    1480
## 5                   0.39            1.82        4.320000 1.040  2.93     735
## 6                   0.34            1.97        6.750000 1.050  2.85    1450
## 7                   0.30            1.98        5.250000 1.020  3.58    1290
## 8                   0.31            1.25        5.050000 1.060  3.58    1295
## 9                   0.29            1.98        5.200000 1.080  2.85    1045
## 10                  0.22            1.85        7.220000 1.010  3.55    1045
## 11                  0.22            2.38        5.750000 1.250  3.17    1510
## 12                  0.26            1.57        5.000000 1.170  2.82    1280
## 13                  0.29            1.81        5.600000 1.150  2.90    1320
## 14                  0.43            2.81        5.400000 1.250  2.73    1150
## 15                  0.29            2.96        7.500000 1.200  3.00    1547
## 16                  0.30            1.46        7.300000 1.280  2.88    1310
## 17                  0.33            1.97        6.200000 1.070  2.65    1280
## 18                  0.40            1.72        6.600000 1.130  2.57    1130
## 19                  0.32            1.86        8.700000 1.230  2.82    1680
## 20                  0.17            1.66        5.100000 0.960  3.36     845
## 21                  0.24            2.10        5.650000 1.090  3.71     780
## 22                  0.25            1.98        4.500000 1.030  3.52     770
## 23                  0.27            1.69        3.800000 1.110  4.00    1035
## 24                  0.26            1.46        3.930000 1.090  3.63    1015
## 25                  0.28            1.66        3.520000 1.120  3.82     845
## 26                  0.47            1.92        3.580000 1.130  3.20     830
## 27                  0.34            1.45        4.800000 0.920  3.22    1195
## 28                  0.27            1.35        3.950000 1.020  2.77    1285
## 29                  0.37            1.76        4.500000 1.250  3.40     915
## 30                  0.26            1.98        4.700000 1.040  3.59    1035
## 31                  0.29            2.38        5.700000 1.190  2.71    1285
## 32                  0.22            1.95        6.900000 1.090  2.88    1515
## 33                  0.42            1.97        3.840000 1.230  2.87     990
## 34                  0.50            1.35        5.400000 1.250  3.00    1235
## 35                  0.29            1.54        4.200000 1.100  2.87    1095
## 36                  0.26            1.86        5.100000 1.040  3.47     920
## 37                  0.34            1.36        4.600000 1.090  2.78     880
## 38                  0.29            1.44        4.250000 1.120  2.51    1105
## 39                  0.28            1.37        3.700000 1.180  2.69    1020
## 40                  0.20            2.08        5.100000 0.890  3.53     760
## 41                  0.34            2.34        6.130000 0.950  3.38     795
## 42                  0.27            1.48        4.280000 0.910  3.00    1035
## 43                  0.17            1.70        5.430000 0.880  3.56    1095
## 44                  0.32            1.66        4.360000 0.820  3.00     680
## 45                  0.28            2.03        5.040000 0.880  3.35     885
## 46                  0.30            1.25        5.240000 0.870  3.33    1080
## 47                  0.27            2.19        4.900000 1.040  3.44    1065
## 48                  0.21            2.14        6.100000 0.910  3.33     985
## 49                  0.32            2.38        6.200000 1.070  2.75    1060
## 50                  0.32            2.08        8.900000 1.120  3.10    1260
## 51                  0.17            2.91        7.200000 1.120  2.91    1150
## 52                  0.22            2.29        5.600000 1.240  3.37    1265
## 53                  0.32            1.87        7.050000 1.010  3.26    1190
## 54                  0.39            1.68        6.300000 1.130  2.93    1375
## 55                  0.21            1.62        5.850000 0.920  3.20    1060
## 56                  0.20            2.45        6.250000 0.980  3.03    1120
## 57                  0.26            2.03        6.380000 0.940  3.31     970
## 58                  0.31            1.66        6.000000 1.070  2.84    1270
## 59                  0.19            2.04        6.800000 0.890  2.87    1285
## 60                  0.28            0.42        1.950000 1.050  1.82     520
## 61                  0.63            0.41        3.270000 1.250  1.67     680
## 62                  0.53            0.62        5.750000 0.980  1.59     450
## 63                  0.32            0.73        3.800000 1.230  2.46     630
## 64                  0.19            1.87        4.450000 1.220  2.87     420
## 65                  0.45            1.03        2.950000 1.450  2.23     355
## 66                  0.37            2.08        4.600000 1.190  2.30     678
## 67                  0.26            2.28        5.300000 1.120  3.18     502
## 68                  0.27            1.04        4.680000 1.120  3.48     510
## 69                  0.55            0.42        3.170000 1.020  1.93     750
## 70                  0.14            2.50        2.850000 1.280  3.07     718
## 71                  0.37            1.46        3.050000 0.906  1.82     870
## 72                  0.21            1.87        3.380000 1.360  3.16     410
## 73                  0.27            1.03        3.740000 0.980  2.78     472
## 74                  0.21            1.96        3.350000 1.310  3.50     985
## 75                  0.13            1.65        3.210000 0.990  3.13     886
## 76                  0.34            1.15        3.800000 1.230  2.14     428
## 77                  0.24            1.46        4.600000 1.190  2.48     392
## 78                  0.43            0.95        2.650000 0.960  2.52     500
## 79                  0.35            2.76        3.400000 1.060  2.31     750
## 80                  0.43            1.95        2.570000 1.190  3.13     463
## 81                  0.30            1.43        2.500000 1.380  3.12     278
## 82                  0.26            1.77        3.900000 1.160  3.14     714
## 83                  0.40            1.40        2.200000 1.310  2.72     630
## 84                  0.61            1.62        4.800000 0.840  2.01     515
## 85                  0.22            2.35        3.050000 0.790  3.08     520
## 86                  0.30            1.46        2.620000 1.230  3.16     450
## 87                  0.43            1.56        2.450000 1.330  2.26     495
## 88                  0.40            1.34        2.600000 1.360  3.21     562
## 89                  0.48            1.35        2.800000 1.000  2.75     680
## 90                  0.42            1.38        1.740000 1.070  3.21     625
## 91                  0.52            1.64        2.400000 1.080  2.27     480
## 92                  0.50            1.63        3.600000 1.050  2.65     450
## 93                  0.58            1.62        3.050000 0.960  2.06     495
## 94                  0.25            1.99        2.150000 1.150  3.30     290
## 95                  0.17            1.35        3.250000 1.160  2.96     345
## 96                  0.32            3.28        2.600000 1.160  2.63     937
## 97                  0.14            1.56        2.500000 0.950  2.26     625
## 98                  0.29            1.77        2.900000 1.230  2.74     428
## 99                  0.24            1.95        4.500000 1.040  2.77     660
## 100                 0.45            2.81        2.300000 1.420  2.83     406
## 101                 0.26            1.40        3.300000 1.270  2.96     710
## 102                 0.29            1.35        2.450000 1.040  2.77     562
## 103                 0.34            1.31        2.800000 0.800  3.38     438
## 104                 0.37            1.42        2.060000 0.940  2.44     415
## 105                 0.32            1.48        2.940000 1.040  3.57     672
## 106                 0.66            1.42        2.700000 0.860  3.30     315
## 107                 0.37            1.63        3.400000 1.000  3.17     510
## 108                 0.48            1.63        3.300000 0.880  2.42     488
## 109                 0.39            2.08        2.700000 0.860  3.02     312
## 110                 0.29            2.49        2.650000 0.960  3.26     680
## 111                 0.24            3.58        2.900000 0.750  2.81     562
## 112                 0.26            1.22        2.000000 0.900  2.78     325
## 113                 0.60            1.05        3.800000 1.230  2.50     607
## 114                 0.42            1.44        3.080000 1.100  2.31     434
## 115                 0.43            1.04        2.900000 0.930  3.19     385
## 116                 0.52            2.01        1.900000 1.710  2.87     407
## 117                 0.30            1.53        1.950000 0.950  3.33     495
## 118                 0.34            1.61        2.060000 1.060  2.96     345
## 119                 0.43            0.83        3.400000 0.700  2.12     372
## 120                 0.37            1.87        1.280000 0.930  3.05     564
## 121                 0.32            1.83        3.250000 0.800  3.39     625
## 122                 0.47            1.87        6.000000 0.930  3.69     465
## 123                 0.43            1.71        2.080000 0.920  3.12     365
## 124                 0.30            2.01        2.600000 0.730  3.10     380
## 125                 0.21            2.91        2.800000 0.750  3.64     380
## 126                 0.37            1.35        2.760000 0.860  3.28     378
## 127                 0.39            1.77        3.940000 0.690  2.84     352
## 128                 0.58            1.76        3.000000 0.970  2.44     466
## 129                 0.40            1.90        2.120000 0.890  2.78     342
## 130                 0.42            1.35        2.600000 0.790  2.57     580
## 131                 0.21            0.94        4.100000 0.760  1.29     630
## 132                 0.24            0.83        5.400000 0.740  1.42     530
## 133                 0.27            0.83        5.700000 0.660  1.36     560
## 134                 0.17            0.84        5.000000 0.780  1.29     600
## 135                 0.60            1.25        5.450000 0.750  1.51     650
## 136                 0.63            0.94        7.100000 0.730  1.58     695
## 137                 0.53            0.80        3.850000 0.750  1.27     720
## 138                 0.63            1.10        5.000000 0.820  1.69     515
## 139                 0.58            0.88        5.700000 0.810  1.82     580
## 140                 0.53            0.81        4.920000 0.890  2.15     590
## 141                 0.53            0.75        4.600000 0.770  2.31     600
## 142                 0.37            0.64        5.600000 0.700  2.47     780
## 143                 0.50            0.55        4.350000 0.890  2.06     520
## 144                 0.47            1.02        4.400000 0.910  2.05     550
## 145                 0.29            1.14        8.210000 0.650  2.00     855
## 146                 0.43            1.30        4.000000 0.600  1.68     830
## 147                 0.40            0.68        4.900000 0.580  1.33     415
## 148                 0.47            0.86        7.650000 0.540  1.86     625
## 149                 0.45            1.25        8.420000 0.550  1.62     650
## 150                 0.34            1.14        9.400000 0.570  1.33     550
## 151                 0.22            1.25        8.600000 0.590  1.30     500
## 152                 0.24            1.26       10.800000 0.480  1.47     480
## 153                 0.26            1.56        7.100000 0.610  1.33     425
## 154                 0.61            1.87       10.520000 0.560  1.51     675
## 155                 0.53            1.40        7.600000 0.580  1.55     640
## 156                 0.61            1.55        7.900000 0.600  1.48     725
## 157                 0.48            1.56        9.010000 0.570  1.64     480
## 158                 0.63            1.14        7.500000 0.670  1.73     880
## 159                 0.53            2.70       13.000000 0.570  1.96     660
## 160                 0.52            2.29       11.750000 0.570  1.78     620
## 161                 0.50            1.04        7.650000 0.560  1.58     520
## 162                 0.50            0.80        5.880000 0.960  1.82     680
## 163                 0.60            0.96        5.580000 0.870  2.11     570
## 164                 0.40            0.94        5.280000 0.680  1.75     675
## 165                 0.41            1.03        9.580000 0.700  1.68     615
## 166                 0.52            1.15        6.620000 0.780  1.75     520
## 167                 0.43            1.46       10.680000 0.850  1.56     695
## 168                 0.40            0.97       10.260000 0.720  1.75     685
## 169                 0.39            1.54        8.660000 0.740  1.80     750
## 170                 0.27            1.11        8.500000 0.670  1.92     630
## 171                 0.40            0.73        5.500000 0.660  1.83     510
## 172                 0.48            0.64        9.899999 0.570  1.63     470
## 173                 0.44            1.24        9.700000 0.620  1.71     660
## 174                 0.52            1.06        7.700000 0.640  1.74     740
## 175                 0.43            1.41        7.300000 0.700  1.56     750
## 176                 0.43            1.35       10.200000 0.590  1.56     835
## 177                 0.53            1.46        9.300000 0.600  1.62     840
## 178                 0.56            1.35        9.200000 0.610  1.60     560

Paso 3. Entender los datos

summary(df1)
##     Alcohol        Malic_Acid         Ash         Ash_Alcanity  
##  Min.   :11.03   Min.   :0.740   Min.   :1.360   Min.   :10.60  
##  1st Qu.:12.36   1st Qu.:1.603   1st Qu.:2.210   1st Qu.:17.20  
##  Median :13.05   Median :1.865   Median :2.360   Median :19.50  
##  Mean   :13.00   Mean   :2.336   Mean   :2.367   Mean   :19.49  
##  3rd Qu.:13.68   3rd Qu.:3.083   3rd Qu.:2.558   3rd Qu.:21.50  
##  Max.   :14.83   Max.   :5.800   Max.   :3.230   Max.   :30.00  
##    Magnesium      Total_Phenols     Flavanoids    Nonflavanoid_Phenols
##  Min.   : 70.00   Min.   :0.980   Min.   :0.340   Min.   :0.1300      
##  1st Qu.: 88.00   1st Qu.:1.742   1st Qu.:1.205   1st Qu.:0.2700      
##  Median : 98.00   Median :2.355   Median :2.135   Median :0.3400      
##  Mean   : 99.74   Mean   :2.295   Mean   :2.029   Mean   :0.3619      
##  3rd Qu.:107.00   3rd Qu.:2.800   3rd Qu.:2.875   3rd Qu.:0.4375      
##  Max.   :162.00   Max.   :3.880   Max.   :5.080   Max.   :0.6600      
##  Proanthocyanins Color_Intensity       Hue             OD280      
##  Min.   :0.410   Min.   : 1.280   Min.   :0.4800   Min.   :1.270  
##  1st Qu.:1.250   1st Qu.: 3.220   1st Qu.:0.7825   1st Qu.:1.938  
##  Median :1.555   Median : 4.690   Median :0.9650   Median :2.780  
##  Mean   :1.591   Mean   : 5.058   Mean   :0.9574   Mean   :2.612  
##  3rd Qu.:1.950   3rd Qu.: 6.200   3rd Qu.:1.1200   3rd Qu.:3.170  
##  Max.   :3.580   Max.   :13.000   Max.   :1.7100   Max.   :4.000  
##     Proline      
##  Min.   : 278.0  
##  1st Qu.: 500.5  
##  Median : 673.5  
##  Mean   : 746.9  
##  3rd Qu.: 985.0  
##  Max.   :1680.0
str(df1)
## 'data.frame':    178 obs. of  13 variables:
##  $ Alcohol             : num  14.2 13.2 13.2 14.4 13.2 ...
##  $ Malic_Acid          : num  1.71 1.78 2.36 1.95 2.59 1.76 1.87 2.15 1.64 1.35 ...
##  $ Ash                 : num  2.43 2.14 2.67 2.5 2.87 2.45 2.45 2.61 2.17 2.27 ...
##  $ Ash_Alcanity        : num  15.6 11.2 18.6 16.8 21 15.2 14.6 17.6 14 16 ...
##  $ Magnesium           : int  127 100 101 113 118 112 96 121 97 98 ...
##  $ Total_Phenols       : num  2.8 2.65 2.8 3.85 2.8 3.27 2.5 2.6 2.8 2.98 ...
##  $ Flavanoids          : num  3.06 2.76 3.24 3.49 2.69 3.39 2.52 2.51 2.98 3.15 ...
##  $ Nonflavanoid_Phenols: num  0.28 0.26 0.3 0.24 0.39 0.34 0.3 0.31 0.29 0.22 ...
##  $ Proanthocyanins     : num  2.29 1.28 2.81 2.18 1.82 1.97 1.98 1.25 1.98 1.85 ...
##  $ Color_Intensity     : num  5.64 4.38 5.68 7.8 4.32 6.75 5.25 5.05 5.2 7.22 ...
##  $ Hue                 : num  1.04 1.05 1.03 0.86 1.04 1.05 1.02 1.06 1.08 1.01 ...
##  $ OD280               : num  3.92 3.4 3.17 3.45 2.93 2.85 3.58 3.58 2.85 3.55 ...
##  $ Proline             : int  1065 1050 1185 1480 735 1450 1290 1295 1045 1045 ...

Paso 4. Escalar los datos

# Sólo si los datos no están en la misma escala
datos_escalados <- scale(df1)

Paso 5. Determinar números de grupos

# Siempre es un valor inicial cualquiera, luego se optimiza. 
grupos2 <- 3

Paso 6. Generar los grupos

clusters2 <- kmeans(datos_escalados,grupos2)
clusters2
## K-means clustering with 3 clusters of sizes 65, 62, 51
## 
## Cluster means:
##      Alcohol Malic_Acid        Ash Ash_Alcanity   Magnesium Total_Phenols
## 1 -0.9234669 -0.3929331 -0.4931257    0.1701220 -0.49032869   -0.07576891
## 2  0.8328826 -0.3029551  0.3636801   -0.6084749  0.57596208    0.88274724
## 3  0.1644436  0.8690954  0.1863726    0.5228924 -0.07526047   -0.97657548
##    Flavanoids Nonflavanoid_Phenols Proanthocyanins Color_Intensity        Hue
## 1  0.02075402          -0.03343924      0.05810161      -0.8993770  0.4605046
## 2  0.97506900          -0.56050853      0.57865427       0.1705823  0.4726504
## 3 -1.21182921           0.72402116     -0.77751312       0.9388902 -1.1615122
##        OD280    Proline
## 1  0.2700025 -0.7517257
## 2  0.7770551  1.1220202
## 3 -1.2887761 -0.4059428
## 
## Clustering vector:
##   [1] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
##  [38] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2
##  [75] 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
## [112] 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
## [149] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
## 
## Within cluster sum of squares by cluster:
## [1] 558.6971 385.6983 326.3537
##  (between_SS / total_SS =  44.8 %)
## 
## Available components:
## 
## [1] "cluster"      "centers"      "totss"        "withinss"     "tot.withinss"
## [6] "betweenss"    "size"         "iter"         "ifault"
set.seed(123)
optimizacion2 <- clusGap(df1, FUN=kmeans, nstart=1, K.max=10)
plot(optimizacion2, xlab="Número de clusters k")

fviz_cluster(clusters2, data=datos_escalados)

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