Data processing pipeline for Experiment 89 data collected on Crop Reporter camera within BTI’s PhenoSight facility.
list.files()## [1] "Exp00089_Decode.tsv" "Exp00089_ExpDesign.tsv"
## [3] "Exp00089_Pipeline.nb.html" "Exp00089_Pipeline.Rmd"
## [5] "Exp00089_plots.pdf" "Exp00089_PS2_Analysis_new.TXT"
## [7] "Exp00089_PS2_Analysis.TXT" "Exp00092_ExpDesign.tsv"
## [9] "Exp00092_PS2_Analysis_new.TXT" "Exp00094_ExpDesign.tsv"
## [11] "Exp00094_PS2_Analysis_new.TXT" "Exp00095_ExpDesign.tsv"
## [13] "Exp00095_PS2_Analysis_new.TXT" "Exp00096_ExpDesign.tsv"
## [15] "Exp00096_PS2_Analysis_new.TXT" "Exp010098_ExpDesign.tsv"
## [17] "Exp010098_PS2_Analysis_new.TXT" "Exp010099_ExpDesign.tsv"
## [19] "Exp010099_PS2_Analysis_new.TXT" "Exp010100_ExpDesign.tsv"
## [21] "Exp010100_PS2_Analysis_new.TXT" "Exp010102_ExpDesign.tsv"
## [23] "Exp010102_PS2_Analysis_new.TXT" "Exp010103_ExpDesign.tsv"
## [25] "Exp010103_PS2_Analysis_new.TXT" "Exp010104_ExpDesign.tsv"
## [27] "Exp010104_PS2_Analysis_new.TXT" "Exp010105_ExpDesign.tsv"
## [29] "Exp010105_PS2_Analysis_new.TXT" "Exp010108_ExpDesign.tsv"
## [31] "Exp010108_PS2_Analysis_new.TXT" "Exp010109_ExpDesign.tsv"
## [33] "Exp010109_PS2_Analysis_new.TXT" "Exp010111_PS2_Analysis_clean.TXT"
## [35] "Exp010112_PS2_Analysis_new.TXT" "Exp010113_PS2_Analysis.TXT"
## [37] "Exp010134_ExpDesign.tsv" "Exp010134_PS2_Analysis.TXT"
## [39] "Exp010136_ExpDesign.tsv" "Exp010136_PS2_Analysis.TXT"
## [41] "Exp010190A_PS2_Analysis_clean.TXT" "Exp010190B_PS2_Analysis.TXT"
## [43] "Exp010190C_PS2_Analysis_clean.TXT" "Exp010191_ExpDesign.txt"
## [45] "Exp010191_PS2_Analysis_new.TXT" "Exp10214_PS2_Analysis_clean.TXT"
## [47] "Exp10215_PS2_Analysis_clean.TXT" "Exp10217_PS2_Analysis.TXT"
## [49] "Exp10218_PS2_Analysis.TXT"#install.packages("data.table")
library(data.table)## Warning: package 'data.table' was built under R version 4.3.3data <- fread("Exp00089_PS2_Analysis.TXT", sep = "\t")
data