Module06 Quarto Document

Salinity and Temperature Recordings from stations of the coast of the Netherlands

Reads in the file and shows structure of the data

temperature <- read.csv("Temperature.csv")
str(temperature)
'data.frame':   8528 obs. of  16 variables:
 $ Sample     : chr  "DANT.19900110" "DANT.19900206" "DANT.19900308" "DANT.19900404" ...
 $ Date       : int  19900110 19900206 19900308 19900404 19900509 19900620 19900718 19900815 19900919 19901017 ...
 $ DateNr     : chr  "10/1/90" "6/2/90" "8/3/90" "4/4/90" ...
 $ dDay1      : int  7 34 64 91 126 168 196 224 259 287 ...
 $ dDay2      : int  9 36 66 93 128 170 198 226 261 289 ...
 $ dDay3      : int  9 36 66 93 128 170 198 226 261 289 ...
 $ Station    : chr  "DANT" "DANT" "DANT" "DANT" ...
 $ Area       : chr  "WZ" "WZ" "WZ" "WZ" ...
 $ X31UE_ED50 : num  681380 681380 681380 681380 681380 ...
 $ X31UN_ED50 : num  5920571 5920571 5920571 5920571 5920571 ...
 $ Year       : int  1990 1990 1990 1990 1990 1990 1990 1990 1990 1990 ...
 $ Month      : int  1 2 3 4 5 6 7 8 9 10 ...
 $ Season     : chr  "winter" "winter" "spring" "spring" ...
 $ Salinity   : num  29.2 27.4 25 28.8 33.3 ...
 $ Temperature: num  4 6 7.3 8.2 17.4 18.1 17 21 15.1 13.8 ...
 $ CHLFa      : num  1.3 NA 21.1 25 10.2 6.2 7.9 7.85 13 11.8 ...

Provides mean temperatue and salinity

mean(temperature$Temperature, na.rm = TRUE)
[1] 12.20743
mean(temperature$Salinity, na.rm = TRUE)
[1] 29.70221

Provides the standard deviation of temperature and salinity

sd(temperature$Temperature, na.rm = TRUE)
[1] 5.412521
sd(temperature$Salinity, na.rm = TRUE)
[1] 5.421593

Assigns values to standard deviations and mean tempeartures in relation to year and location in order to present in a table

tapply(temperature$Temperature, temperature$Station,mean, na.rm =TRUE)
    DANT     DREI       G6     GROO     HAMM     HANS     HUIB     LODS 
12.05908 12.77160 10.66570 12.25853 12.50000 13.54894 11.85353 12.61192 
    MARS      N02      N10      N20      N70      R03      R50      R70 
12.39607 11.37433 12.45878 12.19753 12.14789 12.80000 13.94911 13.98022 
    SOEL     T004     T010     T100     T135     T175     T235     VLIS 
13.21203 11.28425 12.37517 11.94766 11.75512 11.55431 11.32355 12.79292 
     W02      W20      W70     WISS     ZIJP     ZUID 
10.51829 11.87937 12.18243 12.45090 12.55904 11.83928 
tapply(temperature$Salinity, temperature$Station, mean, na.rm =TRUE)
    DANT     DREI       G6     GROO     HAMM     HANS     HUIB     LODS 
28.94468 29.83813 30.59610 14.57571 31.35738 18.29124 29.52631 30.73000 
    MARS      N02      N10      N20      N70      R03      R50      R70 
28.03457 28.78695 30.45223 31.93275 34.94147 30.54978 33.49888 33.67944 
    SOEL     T004     T010     T100     T135     T175     T235     VLIS 
18.09477 32.08114 32.72095 34.56746 34.67667 34.75135 34.87812 29.55476 
     W02      W20      W70     WISS     ZIJP     ZUID 
32.05992 33.31554 35.02006 31.75164 29.39230 28.83997 
tapply(temperature$Temperature, temperature$Year, mean, na.rm = TRUE)
    1990     1991     1992     1993     1994     1995     1996     1997 
11.99146 11.00885 11.55799 11.45385 12.07944 12.32080 10.72728 12.33687 
    1998     1999     2000     2001     2002     2003     2004     2005 
12.13386 13.10577 12.61539 12.74162 13.05500 12.69017 12.56788 12.56112 
tapply(temperature$Salinity, temperature$Year, mean, na.rm = TRUE)
    1990     1991     1992     1993     1994     1995     1996     1997 
30.89873 30.88625 30.27116 29.52839 29.07707 28.94954 30.66670 30.54525 
    1998     1999     2000     2001     2002     2003     2004     2005 
29.55748 29.03291 28.99534 28.22390 28.89323 29.60946 30.45629 30.35355 

Relates the data to each other

aggregate(Temperature ~ Year + Month, data = temperature, FUN = mean, na.rm = TRUE)
    Year Month Temperature
1   1990     1    6.313889
2   1991     1    5.210000
3   1992     1    5.858140
4   1993     1    4.965217
5   1994     1    5.691111
6   1995     1    5.778000
7   1996     1    3.645238
8   1997     1    2.146857
9   1998     1    6.685926
10  1999     1    5.717778
11  2000     1    5.622963
12  2001     1    4.754375
13  2002     1    4.427778
14  2003     1    4.848485
15  2004     1    5.558636
16  2005     1    5.877692
17  1990     2    6.475000
18  1991     2    3.576923
19  1992     2    5.040625
20  1993     2    5.231111
21  1994     2    4.814706
22  1995     2    6.400000
23  1996     2    1.751351
24  1997     2    2.793600
25  1998     2    5.023438
26  1999     2    4.280000
27  2000     2    5.635517
28  2001     2    5.717826
29  2002     2    7.634286
30  2003     2    3.864545
31  2004     2    5.739286
32  2005     2    4.670455
33  1990     3    8.192857
34  1991     3    5.286207
35  1992     3    6.525806
36  1993     3    5.521622
37  1994     3    5.815686
38  1995     3    6.800000
39  1996     3    2.950000
40  1997     3    6.747551
41  1998     3    6.965862
42  1999     3    6.684898
43  2000     3    6.984773
44  2001     3    5.268108
45  2002     3    7.487778
46  2003     3    6.042927
47  2004     3    5.784407
48  2005     3    5.051000
49  1990     4    9.153333
50  1991     4    8.365714
51  1992     4    8.030769
52  1993     4    8.584615
53  1994     4    7.742857
54  1995     4    8.386364
55  1996     4    6.392683
56  1997     4    8.507045
57  1998     4    8.965862
58  1999     4   10.036364
59  2000     4    8.857907
60  2001     4    8.117222
61  2002     4    9.589038
62  2003     4    9.197736
63  2004     4    9.695370
64  2005     4    9.044444
65  1990     5   14.357576
66  1991     5   10.185000
67  1992     5   12.074324
68  1993     5   13.170270
69  1994     5   11.987097
70  1995     5   11.572549
71  1996     5   10.101429
72  1997     5   12.223214
73  1998     5   13.181455
74  1999     5   13.028776
75  2000     5   13.255000
76  2001     5   12.031867
77  2002     5   12.416441
78  2003     5   13.620857
79  2004     5   12.478364
80  2005     5   11.883061
81  1990     6   16.277273
82  1991     6   13.059259
83  1992     6   16.887838
84  1993     6   16.024390
85  1994     6   14.637255
86  1995     6   14.632609
87  1996     6   14.996364
88  1997     6   15.570200
89  1998     6   16.557660
90  1999     6   16.019091
91  2000     6   15.611111
92  2001     6   15.330877
93  2002     6   16.343036
94  2003     6   18.874643
95  2004     6   15.784259
96  2005     6   15.061846
97  1990     7   17.423333
98  1991     7   17.724324
99  1992     7   18.745000
100 1993     7   17.142857
101 1994     7   19.314035
102 1995     7   18.335849
103 1996     7   16.509091
104 1997     7   18.483594
105 1998     7   17.108049
106 1999     7   18.442623
107 2000     7   16.645918
108 2001     7   19.071818
109 2002     7   17.872241
110 2003     7   19.644000
111 2004     7   17.292632
112 2005     7   18.799111
113 1990     8   18.976667
114 1991     8   19.550000
115 1992     8   18.905000
116 1993     8   17.376316
117 1994     8   19.903065
118 1995     8   20.385000
119 1996     8   18.390741
120 1997     8   20.919815
121 1998     8   18.749200
122 1999     8   19.174603
123 2000     8   18.756102
124 2001     8   19.292273
125 2002     8   20.403500
126 2003     8   21.038269
127 2004     8   19.780185
128 2005     8   17.692105
129 1990     9   16.831250
130 1991     9   17.896000
131 1992     9   15.958621
132 1993     9   15.660526
133 1994     9   15.753846
134 1995     9   17.243902
135 1996     9   15.953191
136 1997     9   17.910833
137 1998     9   15.998444
138 1999     9   18.999268
139 2000     9   17.424048
140 2001     9   15.645429
141 2002     9   18.297895
142 2003     9   17.982400
143 2004     9   16.174694
144 2005     9   17.883455
145 1990    10   13.851724
146 1991    10   13.647727
147 1992    10   13.095135
148 1993    10   13.648485
149 1994    10   12.884375
150 1995    10   15.133333
151 1996    10   13.725000
152 1997    10   13.920000
153 1998    10   11.752941
154 1999    10   13.080385
155 2000    10   13.697297
156 2001    10   14.866410
157 2002    10   13.262703
158 2003    10   12.246765
159 2004    10   12.790000
160 2005    10   14.498125
161 1990    11   10.345161
162 1991    11    8.400000
163 1992    11    8.900833
164 1993    11    8.580000
165 1994    11   11.212195
166 1995    11   11.479487
167 1996    11    9.386410
168 1997    11   10.031200
169 1998    11    9.037097
170 1999    11    7.207857
171 2000    11    9.189630
172 2001    11   10.069130
173 2002    11   10.565357
174 2003    11    9.401000
175 2004    11   10.301786
176 2005    11   11.562759
177 1990    12    6.766667
178 1991    12    6.556757
179 1992    12    7.576977
180 1993    12    5.532258
181 1994    12    9.012821
182 1995    12    5.417143
183 1996    12    6.581818
184 1997    12    6.399259
185 1998    12    6.080741
186 1999    12    5.637200
187 2000    12    7.550952
188 2001    12    7.821786
189 2002    12    5.246552
190 2003    12    6.464762
191 2004    12    7.444643
192 2005    12    7.111481
aggregate(Salinity ~ Year + Month, data = temperature, FUN = mean, na.rm = TRUE)
    Year Month Salinity
1   1990     1 30.27000
2   1991     1 29.77267
3   1992     1 29.99535
4   1993     1 28.19087
5   1994     1 27.31000
6   1995     1 27.97180
7   1996     1 30.66524
8   1997     1 31.24865
9   1998     1 30.24886
10  1999     1 28.94469
11  2000     1 28.49000
12  2001     1 29.25000
13  2002     1 28.19519
14  2003     1 28.65606
15  2004     1 28.64591
16  2005     1 30.72360
17  1990     2 27.94625
18  1991     2 30.51923
19  1992     2 30.47500
20  1993     2 27.25280
21  1994     2 28.97088
22  1995     2 25.15593
23  1996     2 30.01189
24  1997     2 28.73720
25  1998     2 30.55347
26  1999     2 26.74842
27  2000     2 28.62345
28  2001     2 26.99696
29  2002     2 26.19952
30  2003     2 26.75606
31  2004     2 25.41143
32  2005     2 29.20818
33  1990     3 30.22250
34  1991     3 30.27966
35  1992     3 30.16500
36  1993     3 28.32056
37  1994     3 27.95980
38  1995     3 28.45118
39  1996     3 30.35333
40  1997     3 30.33224
41  1998     3 26.51448
42  1999     3 27.82719
43  2000     3 26.74886
44  2001     3 27.01111
45  2002     3 27.08886
46  2003     3 27.52780
47  2004     3 29.26576
48  2005     3 29.38240
49  1990     4 30.80133
50  1991     4 30.84543
51  1992     4 29.69103
52  1993     4 29.49949
53  1994     4 27.25381
54  1995     4 28.28159
55  1996     4 29.99561
56  1997     4 29.89523
57  1998     4 30.20926
58  1999     4 26.46606
59  2000     4 27.78628
60  2001     4 25.79417
61  2002     4 29.27327
62  2003     4 29.42528
63  2004     4 30.29222
64  2005     4 29.66933
65  1990     5 30.71281
66  1991     5 29.63042
67  1992     5 29.55811
68  1993     5 30.34541
69  1994     5 29.02492
70  1995     5 29.05375
71  1996     5 30.96757
72  1997     5 29.87750
73  1998     5 30.07436
74  1999     5 28.90551
75  2000     5 29.11696
76  2001     5 27.69520
77  2002     5 28.68169
78  2003     5 27.61743
79  2004     5 30.51545
80  2005     5 29.39306
81  1990     6 31.01000
82  1991     6 31.08407
83  1992     6 30.35611
84  1993     6 30.54561
85  1994     6 28.83816
86  1995     6 28.32043
87  1996     6 30.93800
88  1997     6 30.86431
89  1998     6 29.16064
90  1999     6 29.79455
91  2000     6 29.80463
92  2001     6 28.86246
93  2002     6 29.54439
94  2003     6 27.59964
95  2004     6 30.69167
96  2005     6 30.86169
97  1990     7 31.43033
98  1991     7 30.83892
99  1992     7 30.59800
100 1993     7 30.94595
101 1994     7 30.38172
102 1995     7 29.41472
103 1996     7 31.25352
104 1997     7 30.05484
105 1998     7 29.86098
106 1999     7 30.31197
107 2000     7 29.52940
108 2001     7 29.14891
109 2002     7 30.07845
110 2003     7 31.02720
111 2004     7 31.00930
112 2005     7 30.15822
113 1990     8 31.99467
114 1991     8 31.43059
115 1992     8 30.80000
116 1993     8 30.53184
117 1994     8 30.16051
118 1995     8 29.85034
119 1996     8 31.21519
120 1997     8 30.58132
121 1998     8 30.79800
122 1999     8 30.69317
123 2000     8 29.97169
124 2001     8 30.04818
125 2002     8 29.98167
126 2003     8 31.83269
127 2004     8 31.41574
128 2005     8 30.64439
129 1990     9 30.41125
130 1991     9 31.36160
131 1992     9 31.25241
132 1993     9 28.51892
133 1994     9 30.61487
134 1995     9 29.36300
135 1996     9 30.43723
136 1997     9 30.03083
137 1998     9 30.19549
138 1999     9 30.03122
139 2000     9 29.35476
140 2001     9 27.70486
141 2002     9 29.12079
142 2003     9 31.38060
143 2004     9 31.03040
144 2005     9 31.44145
145 1990    10 31.91690
146 1991    10 31.58044
147 1992    10 31.80270
148 1993    10 30.09182
149 1994    10 30.50844
150 1995    10 30.29039
151 1996    10 31.50750
152 1997    10 31.62538
153 1998    10 26.48765
154 1999    10 29.21885
155 2000    10 29.77703
156 2001    10 28.18974
157 2002    10 27.88711
158 2003    10 30.37000
159 2004    10 31.61171
160 2005    10 30.68656
161 1990    11 31.53484
162 1991    11 31.11848
163 1992    11 28.24167
164 1993    11 29.79150
165 1994    11 28.81049
166 1995    11 30.25692
167 1996    11 30.36205
168 1997    11 31.85209
169 1998    11 27.67930
170 1999    11 28.35071
171 2000    11 29.72741
172 2001    11 27.49217
173 2002    11 28.56679
174 2003    11 31.03300
175 2004    11 31.16250
176 2005    11 31.25586
177 1990    12 31.10160
178 1991    12 31.42028
179 1992    12 29.92356
180 1993    12 28.58935
181 1994    12 28.97487
182 1995    12 29.41657
183 1996    12 29.53676
184 1997    12 31.20455
185 1998    12 29.48020
186 1999    12 28.57640
187 2000    12 27.88381
188 2001    12 28.03893
189 2002    12 29.41345
190 2003    12 29.75091
191 2004    12 30.50429
192 2005    12 30.53444

Places into tables

table(temperature$Station)

DANT DREI   G6 GROO HAMM HANS HUIB LODS MARS  N02  N10  N20  N70  R03  R50  R70 
 300  293  278  296  295  309  296  294  296  402  665  266  268  161  106  106 
SOEL T004 T010 T100 T135 T175 T235 VLIS  W02  W20  W70 WISS ZIJP ZUID 
 295  339  261  258  259  258  258  421  272  191  190  296  296  303 
table(temperature$Year)

1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 
 367  392  438  436  590  590  583  636  608  570  563  568  545  550  540  552 
table(temperature$Station, temperature$Year)
      
       1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003
  DANT   12   12   18   19   17   13   19   20   22   21   22   21   21   21
  DREI   13   13   13   13   19   21   20   20   21   20   20   20   20   20
  G6     12   16   20   17   21   24   23   28   23   21   13   12   12   12
  GROO   12   12   18   19   17   12   18   19   21   21   21   21   21   21
  HAMM   13   13   13   13   20   21   20   21   20   20   21   20   20   20
  HANS   13   16   13   13   21   24   19   19   18   18   29   29   20   19
  HUIB   12   11   18   19   17   12   19   19   21   21   21   22   21   21
  LODS   13   13   13   13   20   21   20   21   20   20   20   20   20   20
  MARS   12   12   18   18   16   12   19   19   22   21   21   21   21   21
  N02    12   17   20   17   27   29   31   40   37   29   24   27   23   23
  N10    47   45   40   46   53   56   43   52   45   43   36   37   30   31
  N20    12   12   11   11   18   18   18   18   18   18   19   19   19   19
  N70    12   11   11   11   18   18   18   18   18   19   18   20   20   19
  R03     0    5    7    7   13   17   17   23   20    9    8    7    7    7
  R50     0    5    7    7   10    7    7    7    7    7    7    7    7    7
  R70     0    5    7    7   10    7    7    7    7    7    7    7    7    7
  SOEL   13   13   13   12   20   22   20   21   20   20   20   20   20   20
  T004   12   14   20   16   26   27   27   33   28   20   19   19   19   20
  T010   12   10   11   10   18   18   18   18   18   18   18   18   18   19
  T100   12   10   10   10   18   18   18   18   18   18   18   18   18   18
  T135   12   10   10   10   18   18   18   18   18   18   17   19   18   19
  T175   12   10   10   10   18   18   18   18   18   18   18   18   18   18
  T235   12   10   10   10   18   18   18   18   18   18   18   18   18   18
  VLIS   14   18   21   24   35   36   22   23   22   22   30   31   30   32
  W02    12   17   20   17   21   23   23   28   23   16   12   12   12   12
  W20    12   12   11   11   12   12   12   12   12   13   12   12   12   12
  W70    12   12   11   11   12   12   12   12   12   12   12   12   12   12
  WISS   13   13   13   13   20   21   20   22   20   20   21   20   20   20
  ZIJP   13   13   13   13   20   21   20   23   20   20   20   20   20   20
  ZUID   11   12   18   19   17   14   19   21   21   22   21   21   21   22
      
       2004 2005
  DANT   21   21
  DREI   20   20
  G6     12   12
  GROO   21   22
  HAMM   20   20
  HANS   19   19
  HUIB   21   21
  LODS   20   20
  MARS   21   22
  N02    22   24
  N10    29   32
  N20    17   19
  N70    18   19
  R03     7    7
  R50     7    7
  R70     7    7
  SOEL   20   21
  T004   19   20
  T010   18   19
  T100   18   18
  T135   18   18
  T175   18   18
  T235   18   18
  VLIS   31   30
  W02    12   12
  W20    12   12
  W70    12   12
  WISS   20   20
  ZIJP   20   20
  ZUID   22   22