library(tidyverse)
## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
## ✔ dplyr 1.1.4 ✔ readr 2.1.5
## ✔ forcats 1.0.0 ✔ stringr 1.5.1
## ✔ ggplot2 3.5.2 ✔ tibble 3.2.1
## ✔ lubridate 1.9.4 ✔ tidyr 1.3.1
## ✔ purrr 1.0.4
## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## ✖ dplyr::filter() masks stats::filter()
## ✖ dplyr::lag() masks stats::lag()
## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
library(WGCNA)
## Loading required package: dynamicTreeCut
## Loading required package: fastcluster
##
## Attaching package: 'fastcluster'
##
## The following object is masked from 'package:stats':
##
## hclust
##
##
##
## Attaching package: 'WGCNA'
##
## The following object is masked from 'package:stats':
##
## cor
library(conflicted)
options(stringsAsFactors = FALSE)
# Load the gene expression dataset for T2DM
T2DMdata <- read.csv("/Users/lorandacalderonzamora/Downloads/datExpr_integrative_T2DM.csv")
dim(T2DMdata )
## [1] 13142 34
names(T2DMdata )
## [1] "X" "GSM631755" "GSM631756" "GSM631757" "GSM631758" "GSM631759"
## [7] "GSM631760" "GSM631761" "GSM631762" "GSM631763" "GSM631764" "GSM631765"
## [13] "GSM631766" "GSM631767" "GSM524151" "GSM524152" "GSM524153" "GSM524154"
## [19] "GSM524155" "GSM524156" "GSM524157" "GSM524158" "GSM524159" "GSM524160"
## [25] "GSM524161" "GSM524162" "GSM524163" "GSM524164" "GSM524165" "GSM524166"
## [31] "GSM524167" "GSM524168" "GSM524169" "GSM524170"
# Set row names and transposing the Expression matrix
rownames(T2DMdata) <- T2DMdata$X
T2DMdata <- T2DMdata[, -1]
datExpr <- as.data.frame(t(T2DMdata))
dim(datExpr)
## [1] 33 13142
# Quality check for genes and samples
gsg = goodSamplesGenes(datExpr, verbose = 3);
## Flagging genes and samples with too many missing values...
## ..step 1
gsg$allOK
## [1] TRUE
sampleTree = hclust(dist(datExpr), method = "average");
sizeGrWindow(12,9)
par(cex = 0.6);
par(mar = c(0,4,2,0))
plot(sampleTree, main = "Sample clustering to detect outliers", sub="", xlab="", cex.lab = 1.5,
cex.axis = 1.5, cex.main = 2)
# Load the trait metadata associated with the T2DM samples
traitData <- read.csv("/Users/lorandacalderonzamora/Downloads/datMeta_T2DM.csv")
dim(traitData )
## [1] 33 3
names(traitData )
## [1] "geo_accession" "Disease" "Gender"
# Match Expression data with trait metadata
sampleNames <- rownames(datExpr)
head(traitData$geo_accession)
## [1] "GSM631755" "GSM631756" "GSM631757" "GSM631758" "GSM631759" "GSM631760"
all(sampleNames %in% traitData$geo_accession)
## [1] TRUE
# Align trait data to match Expression samples
traitRows <- match(sampleNames, traitData$geo_accession)
datTraits <- traitData[traitRows, ]
rownames(datTraits) <- datTraits$geo_accession
# Converte trait variables to numeric format
datTraits[] <- lapply(datTraits, function(x) {
if (is.character(x) || is.factor(x)) {
as.numeric(as.factor(x))
} else {
x
}
})
datTraits_clean <- datTraits[, sapply(datTraits, is.numeric)]
str(datTraits_clean)
## 'data.frame': 33 obs. of 3 variables:
## $ geo_accession: num 21 22 23 24 25 26 27 28 29 30 ...
## $ Disease : num 1 1 1 1 1 1 1 2 2 2 ...
## $ Gender : num 2 2 2 2 1 1 1 2 2 1 ...
# Sample clustering and visualization of traits as heatmap
sampleTree2 <- hclust(dist(datExpr), method = "average")
traitColors <- numbers2colors(datTraits_clean, signed = FALSE)
plotDendroAndColors(sampleTree2, traitColors,
groupLabels = names(datTraits_clean),
main = "Sample dendrogram and trait heatmap")
save(datExpr, datTraits_clean, file = "T2DMdataInput.RData")
lnames = load(file = "T2DMdataInput.RData");
#The variable lnames contains the names of loaded variables.
lnames
## [1] "datExpr" "datTraits_clean"
# Filter the least variable genes (optional)
variance_genes <- apply(datExpr, 2, var)
datExpr_filtered <- datExpr[, variance_genes > quantile(variance_genes, 0.70)]
# Select a narrower range of powers due to few samples
powers = c(1:10)
sft = pickSoftThreshold(datExpr_filtered, powerVector = powers, verbose = 5)
## pickSoftThreshold: will use block size 3943.
## pickSoftThreshold: calculating connectivity for given powers...
## ..working on genes 1 through 3943 of 3943
## Warning: executing %dopar% sequentially: no parallel backend registered
## Power SFT.R.sq slope truncated.R.sq mean.k. median.k. max.k.
## 1 1 0.9290 2.050 0.913 2020 2130.0 2720
## 2 2 0.5890 0.674 0.598 1240 1310.0 2040
## 3 3 0.0489 0.139 0.340 825 859.0 1590
## 4 4 0.0854 -0.213 0.484 578 588.0 1270
## 5 5 0.2740 -0.454 0.667 420 415.0 1040
## 6 6 0.4120 -0.626 0.780 314 300.0 861
## 7 7 0.4960 -0.766 0.840 240 221.0 722
## 8 8 0.5720 -0.883 0.880 187 165.0 612
## 9 9 0.6100 -0.997 0.893 148 126.0 524
## 10 10 0.6610 -1.080 0.917 119 96.3 452
sizeGrWindow(9, 5)
par(mfrow = c(1, 2))
cex1 = 0.9
plot(sft$fitIndices[,1], -sign(sft$fitIndices[,3]) * sft$fitIndices[,2],
xlab = "Soft Threshold (power)",
ylab = "Scale Free Topology Model Fit, signed R^2", type = "n",
main = "Scale independence")
text(sft$fitIndices[,1], -sign(sft$fitIndices[,3]) * sft$fitIndices[,2],
labels = powers, cex = cex1, col = "red")
abline(h = 0.80, col = "red") # Ajuste del umbral a 0.80
plot(sft$fitIndices[,1], sft$fitIndices[,5],
xlab = "Soft Threshold (power)",
ylab = "Mean Connectivity", type = "n",
main = "Mean connectivity")
text(sft$fitIndices[,1], sft$fitIndices[,5], labels = powers, cex = cex1, col = "red")
# Construction of Co-expression network and module detection
net = blockwiseModules(
datExpr,
power = 10,
TOMType = "unsigned",
minModuleSize = 200,
reassignThreshold = 0,
mergeCutHeight = 0.20,
numericLabels = TRUE,
pamRespectsDendro = FALSE,
saveTOMs = TRUE,
saveTOMFileBase = "TOM_T2DM",
verbose = 3
)
## Calculating module eigengenes block-wise from all genes
## Flagging genes and samples with too many missing values...
## ..step 1
## ....pre-clustering genes to determine blocks..
## Projective K-means:
## ..k-means clustering..
## ..merging smaller clusters...
## Block sizes:
## gBlocks
## 1 2 3
## 4994 4990 3158
## ..Working on block 1 .
## TOM calculation: adjacency..
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication (system BLAS)..
## ..normalization..
## ..done.
## ..saving TOM for block 1 into file TOM_T2DM-block.1.RData
## ....clustering..
## ....detecting modules..
## ....calculating module eigengenes..
## ....checking kME in modules..
## ..removing 1 genes from module 1 because their KME is too low.
## ..Working on block 2 .
## TOM calculation: adjacency..
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication (system BLAS)..
## ..normalization..
## ..done.
## ..saving TOM for block 2 into file TOM_T2DM-block.2.RData
## ....clustering..
## ....detecting modules..
## ....calculating module eigengenes..
## ....checking kME in modules..
## ..removing 6 genes from module 1 because their KME is too low.
## ..removing 1 genes from module 2 because their KME is too low.
## ..Working on block 3 .
## TOM calculation: adjacency..
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication (system BLAS)..
## ..normalization..
## ..done.
## ..saving TOM for block 3 into file TOM_T2DM-block.3.RData
## ....clustering..
## ....detecting modules..
## ....calculating module eigengenes..
## ....checking kME in modules..
## ..removing 108 genes from module 1 because their KME is too low.
## ..removing 26 genes from module 2 because their KME is too low.
## ..merging modules that are too close..
## mergeCloseModules: Merging modules whose distance is less than 0.2
## Calculating new MEs...
# Visualizing Gene dendrograms with module colors
sizeGrWindow(12, 9)
mergedColors = labels2colors(net$colors)
for (i in 1:length(net$dendrograms)) {
plotDendroAndColors(
net$dendrograms[[i]],
mergedColors[net$blockGenes[[i]]],
"Module colors",
dendroLabels = FALSE,
hang = 0.03,
addGuide = TRUE, guideHang = 0.05
)
}
table(net$colors)
##
## 0 1 2 3 4 5 6
## 732 4102 3146 1887 1284 1211 780
# Module Eigengene
MEs = net$MEs
moduleTraitCor = cor(MEs, datTraits_clean, use = "pairwise.complete.obs")
moduleTraitPvalue = corPvalueStudent(moduleTraitCor, nrow(datExpr))
print(moduleTraitCor)
## geo_accession Disease Gender
## ME6 -0.6590365 -0.515712657 0.0834922202
## ME2 -0.7535547 -0.004081972 -0.0817335839
## ME4 -0.7850089 -0.395732791 0.1262090891
## ME3 0.2815963 0.595286549 -0.2293629714
## ME1 0.9130772 0.520863021 -0.1300713527
## ME5 0.7646075 0.117613509 0.0007422545
## ME0 0.3735760 0.110926699 -0.0900191139
print(moduleTraitPvalue)
## geo_accession Disease Gender
## ME6 3.039502e-05 0.0021281671 0.6441238
## ME2 4.154658e-07 0.9820131899 0.6511411
## ME4 6.352797e-08 0.0226305817 0.4840104
## ME3 1.123787e-01 0.0002578466 0.1991477
## ME1 1.297441e-13 0.0018848449 0.4706229
## ME5 2.219373e-07 0.5144946837 0.9967291
## ME0 3.223379e-02 0.5388477519 0.6183469
# Extract the correlations and p-values for the trait "Disease"
cor_Disease = moduleTraitCor[, "Disease"]
pval_Disease = moduleTraitPvalue[, "Disease"]
best_module = which.max(abs(cor_Disease))
print(paste("Most significant module:", names(cor_Disease)[best_module]))
## [1] "Most significant module: ME3"
print(paste("Correlation:", cor_Disease[best_module]))
## [1] "Correlation: 0.595286549462819"
print(paste("P-value:", pval_Disease[best_module]))
## [1] "P-value: 0.000257846584018901"
# Extract most significant module
module3_genes = names(datExpr)[net$colors == 3]
head(module3_genes)
## [1] "ENSG00000000971" "ENSG00000001461" "ENSG00000001617" "ENSG00000001630"
## [5] "ENSG00000005059" "ENSG00000005206"
str(module3_genes)
## chr [1:1887] "ENSG00000000971" "ENSG00000001461" "ENSG00000001617" ...
# PPI network analysis
library(STRINGdb)
string_db <- STRINGdb$new(version = "11.5", species = 9606,
score_threshold = 400, input_directory = "")
# Mapping Module 3 genes and visualizing Protein-Protein Interaction Network
module3_genes <- gsub("\\..*", "", module3_genes)
df_genes <- data.frame(ENSEMBL = module3_genes)
mapped_genes <- string_db$map(df_genes, "ENSEMBL", removeUnmappedRows = TRUE)
## Warning: we couldn't map to STRING 13% of your identifiers
print(head(mapped_genes))
## ENSEMBL STRING_id
## 1 ENSG00000000971 9606.ENSP00000356399
## 2 ENSG00000001461 9606.ENSP00000363520
## 3 ENSG00000001617 9606.ENSP00000002829
## 4 ENSG00000001630 9606.ENSP00000003100
## 5 ENSG00000005059 9606.ENSP00000378145
## 6 ENSG00000005206 9606.ENSP00000478298
unmapped_genes <- setdiff(df_genes$ENSEMBL, mapped_genes$ENSEMBL)
print(unmapped_genes)
## [1] "ENSG00000088340" "ENSG00000099251" "ENSG00000108958" "ENSG00000114374"
## [5] "ENSG00000170827" "ENSG00000174572" "ENSG00000179342" "ENSG00000181524"
## [9] "ENSG00000182165" "ENSG00000183878" "ENSG00000189372" "ENSG00000197670"
## [13] "ENSG00000198221" "ENSG00000204054" "ENSG00000204253" "ENSG00000206066"
## [17] "ENSG00000206990" "ENSG00000207547" "ENSG00000210191" "ENSG00000211639"
## [21] "ENSG00000211795" "ENSG00000211899" "ENSG00000211955" "ENSG00000211956"
## [25] "ENSG00000213071" "ENSG00000213117" "ENSG00000213130" "ENSG00000213600"
## [29] "ENSG00000213652" "ENSG00000213994" "ENSG00000214182" "ENSG00000215063"
## [33] "ENSG00000217085" "ENSG00000217786" "ENSG00000218574" "ENSG00000219941"
## [37] "ENSG00000221857" "ENSG00000223493" "ENSG00000223654" "ENSG00000224220"
## [41] "ENSG00000224419" "ENSG00000224976" "ENSG00000225465" "ENSG00000225618"
## [45] "ENSG00000225774" "ENSG00000226085" "ENSG00000227191" "ENSG00000227408"
## [49] "ENSG00000229358" "ENSG00000230311" "ENSG00000231369" "ENSG00000231543"
## [53] "ENSG00000232024" "ENSG00000232334" "ENSG00000232493" "ENSG00000233803"
## [57] "ENSG00000233901" "ENSG00000235859" "ENSG00000235865" "ENSG00000235941"
## [61] "ENSG00000236144" "ENSG00000236229" "ENSG00000236772" "ENSG00000237213"
## [65] "ENSG00000237350" "ENSG00000237872" "ENSG00000238018" "ENSG00000240370"
## [69] "ENSG00000242299" "ENSG00000244558" "ENSG00000244682" "ENSG00000246863"
## [73] "ENSG00000249859" "ENSG00000250625" "ENSG00000253532" "ENSG00000253755"
## [77] "ENSG00000254676" "ENSG00000254838" "ENSG00000255152" "ENSG00000255856"
## [81] "ENSG00000255872" "ENSG00000256646" "ENSG00000256667" "ENSG00000258458"
## [85] "ENSG00000258539" "ENSG00000258790" "ENSG00000258984" "ENSG00000260532"
## [89] "ENSG00000261093" "ENSG00000261303" "ENSG00000261519" "ENSG00000261732"
## [93] "ENSG00000262075" "ENSG00000262179" "ENSG00000262334" "ENSG00000262539"
## [97] "ENSG00000262943" "ENSG00000263798" "ENSG00000264324" "ENSG00000265257"
## [101] "ENSG00000267458" "ENSG00000267954" "ENSG00000268047" "ENSG00000269609"
## [105] "ENSG00000269653" "ENSG00000272711" "ENSG00000272805" "ENSG00000274084"
## [109] "ENSG00000274131" "ENSG00000274233" "ENSG00000274247" "ENSG00000274320"
## [113] "ENSG00000274429" "ENSG00000274829" "ENSG00000275214" "ENSG00000275338"
## [117] "ENSG00000275482" "ENSG00000275798" "ENSG00000275937" "ENSG00000276033"
## [121] "ENSG00000276155" "ENSG00000276463" "ENSG00000276480" "ENSG00000276537"
## [125] "ENSG00000276726" "ENSG00000276977" "ENSG00000276996" "ENSG00000277092"
## [129] "ENSG00000277414" "ENSG00000277568" "ENSG00000277639" "ENSG00000277943"
## [133] "ENSG00000278006" "ENSG00000278087" "ENSG00000278306" "ENSG00000278759"
## [137] "ENSG00000278855" "ENSG00000279146" "ENSG00000279365" "ENSG00000279695"
## [141] "ENSG00000279719" "ENSG00000280069" "ENSG00000280401" "ENSG00000280479"
## [145] "ENSG00000280549" "ENSG00000281123" "ENSG00000281708" "ENSG00000281766"
## [149] "ENSG00000281879" "ENSG00000281886" "ENSG00000281887" "ENSG00000282046"
## [153] "ENSG00000282106" "ENSG00000282236" "ENSG00000282303" "ENSG00000282367"
## [157] "ENSG00000282415" "ENSG00000282603" "ENSG00000282673" "ENSG00000282725"
## [161] "ENSG00000282750" "ENSG00000282902" "ENSG00000282958" "ENSG00000283068"
## [165] "ENSG00000283447" "ENSG00000283738" "ENSG00000283777" "ENSG00000283883"
## [169] "ENSG00000283946" "ENSG00000284057" "ENSG00000284140" "ENSG00000284143"
## [173] "ENSG00000284260" "ENSG00000284320" "ENSG00000284369" "ENSG00000284459"
## [177] "ENSG00000284770" "ENSG00000284917" "ENSG00000284944" "ENSG00000284948"
## [181] "ENSG00000285011" "ENSG00000285032" "ENSG00000285109" "ENSG00000285125"
## [185] "ENSG00000285136" "ENSG00000285188" "ENSG00000285199" "ENSG00000285221"
## [189] "ENSG00000285226" "ENSG00000285243" "ENSG00000285314" "ENSG00000285326"
## [193] "ENSG00000285417" "ENSG00000285456" "ENSG00000285485" "ENSG00000285493"
## [197] "ENSG00000285505" "ENSG00000285816" "ENSG00000285851" "ENSG00000285982"
## [201] "ENSG00000286001" "ENSG00000286022" "ENSG00000286219" "ENSG00000286231"
## [205] "ENSG00000286901" "ENSG00000287533" "ENSG00000287543" "ENSG00000288114"
## [209] "ENSG00000288169" "ENSG00000288198" "ENSG00000288208" "ENSG00000288269"
## [213] "ENSG00000288309" "ENSG00000288431" "ENSG00000288445" "ENSG00000288453"
## [217] "ENSG00000288504" "ENSG00000288569" "ENSG00000288721" "ENSG00000289626"
## [221] "ENSG00000290203" "ENSG00000290376" "ENSG00000290404" "ENSG00000290613"
## [225] "ENSG00000290672" "ENSG00000290832" "ENSG00000290851" "ENSG00000291079"
## [229] "ENSG00000291102" "ENSG00000291109" "ENSG00000291363" "ENSG00000291479"
## [233] "ENSG00000291505" "ENSG00000291544" "ENSG00000291559" "ENSG00000291657"
## [237] "ENSG00000291738" "ENSG00000291891" "ENSG00000291895" "ENSG00000291905"
## [241] "ENSG00000291931" "ENSG00000291948" "ENSG00000292028" "ENSG00000292086"
## [245] "ENSG00000292096" "ENSG00000292358" "ENSG00000294981" "ENSG00000298169"
## [249] "ENSG00000304654" "ENSG00000307722"
# Plot Protein–Protein Interaction Network with STRINGdb
string_db$plot_network(mapped_genes$STRING_id)
# Retrieve the protein–protein interaction data for the mapped genes
interactions <- string_db$get_interactions(mapped_genes$STRING_id)
head(interactions)
## from to combined_score
## 1 9606.ENSP00000080059 9606.ENSP00000202967 752
## 2 9606.ENSP00000080059 9606.ENSP00000202967 752
## 3 9606.ENSP00000177742 9606.ENSP00000215565 775
## 4 9606.ENSP00000177742 9606.ENSP00000215565 775
## 5 9606.ENSP00000202967 9606.ENSP00000215743 405
## 6 9606.ENSP00000202967 9606.ENSP00000215743 405
# Functional enrichment analysis
enrichment_results_GO <- string_db$get_enrichment(
string_ids = mapped_genes$STRING_id,
category = "Process", # GO "Process" or "Pathway" by KEGG
methodMT = "fdr",
iea = FALSE
)
## Warning in string_db$get_enrichment(string_ids = mapped_genes$STRING_id, :
## methodMT parameter is depecated. Only FDR correction is available.
## Warning in string_db$get_enrichment(string_ids = mapped_genes$STRING_id, : iea
## parameter is deprecated.
head(enrichment_results_GO)
## category term number_of_genes number_of_genes_in_background
## 16 Process GO:0009987 1421 15024
## 17 Process GO:0071704 808 7755
## 18 Process GO:0008152 853 8298
## 19 Process GO:0044238 759 7332
## 20 Process GO:0044237 770 7513
## 21 Process GO:0006807 699 6852
## ncbiTaxonId
## 16 9606
## 17 9606
## 18 9606
## 19 9606
## 20 9606
## 21 9606
## inputGenes
## 16 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## 17 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## 18 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## 20 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## 21 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## preferredNames
## 16 SEMA3F,CPA1,UBR7,XYLT2,SCTR,RTFDC1,LCP2,HDAC7,DERL2,KDM4B,GOLGA5,PYGM,BCL3,MKRN2,PTPN18,TBX21,MRPS34,MAP2K5,C12orf5,FAP,OSTM1,PILRA,ITGB4,TRIP6,SLC22A4,CETP,SIRT4,TFAP4,DLL3,FMO2,PSMD5,NDUFB7,MADCAM1,SNAP29,MMP11,TTLL12,TXN2,GZMH,SOS2,CGRRF1,PIGH,EIF5,VRK1,PNN,CYP24A1,PYGB,MYBL2,BIRC7,OXT,TXNL1,IDH3G,CBLN1,DHODH,FA2H,AQP8,RASL12,GML,CYP4F3,RSPH6A,CYP4F2,EPHX3,TGFB1,CD79A,CRX,ZNRF4,EPOR,SLC5A5,HGF,UBE2D4,CPA2,BET1,MPP6,FKBP14,NOD1,ST6GALNAC2,UTP18,CPD,CCL1,KAT2A,CACNG1,WFS1,SLC25A3,SELPLG,CSRNP2,MYF5,KRR1,CHPT1,SNX3,GUCA1B,TMEM30A,LAMA4,ISL1,POU4F3,HAND1,IL4,PCDH12,MSH2,SLC11A1,PCGF1,TLX2,DOK1,ACADL,REG1A,NEU2,ODC1,GORASP2,ORC2,CD160,SLC19A2,FASTKD2,TTR,RNF103,HOXB5,PANK3,ARAP3,NFYB,DLX4,COIL,TBX2,CAT,MYOG,FTSJ2,NEUROD4,ACTR5,ATP5E,SNAI1,PEPD,LIPE,LYPD3,BMP4,PTGER2,THOC2,VASP,GNRH2,TCF15,S1PR4,KRT38,FLRT1,SIX1,TAS2R3,IDUA,RASL11B,CDC42EP1,GALR3,SMO,HOXD10,ALDH1A2,ATP1B2,KLK12,CMA1,BCL2L2,ARHGEF6,DAZL,MAPK8IP3,CNGB1,C16orf62,UGT2A3,SNX4,CUL9,KRT6B,PVRL2,PLVAP,BST2,HRC,ATXN10,CEP85,PRDM12,HIP1R,SLC35D2,HIGD1B,ABCB7,PDLIM4,BARX1,USP29,NR0B2,PER2,SCLY,RPA1,H3F3B,KDM6B,MATN2,VPS4A,ALDH3B2,CHRM3,MACROD1,CCDC59,RRAS2,VRTN,CD180,KIDINS220,FOLH1,MTNR1B,LMO2,HTRA2,BCO1,DYNC1LI2,STX6,HTR2B,KDELR2,NUPL2,DDX56,NKX2-8,CIB2,IL36A,MRPS18B,GTF2H4,CLPS,MRPL15,NDUFAF1,HAUS2,PLCB2,CCBL2,SLC3A1,LRPPRC,ASNSD1,CCND2,RAB21,PPWD1,DNAH3,NUP133,PPP2R3C,MAN2A1,RNF138,TTC19,SCARB1,SLC6A4,TAOK1,BTBD1,CUX2,LHX5,TIPIN,CILP,LTBP2,ATP5B,PIK3C3,CEP76,WIPI1,WDR59,SMAD2,ARFGEF1,RIMS2,PRR11,RHBDF1,TELO2,GLP2R,GINS1,SPTLC1,CHCHD3,RPL8,HPN,CBFA2T2,CDH20,RRAGB,MARK4,PIAS4,MAPK3,ITGAE,ARVCF,DDX18,ARFGAP3,FAM83E,C9,C6,P4HA1,ACVR1,CLASP1,KAT2B,ZNF106,GTF3C3,COQ10B,HSF4,SLC5A7,MCM6,DARS,ARID4B,CD80,CHST10,PIKFYVE,CSTA,IFT57,NNT,SLC2A9,LYL1,SEPT11,SLC9A3,RAB7A,GOLPH3,NPR3,PIP5K1B,TNPO3,STAP1,POLA2,USP4,OPRK1,MCCC1,SRI,EIF4H,SMARCA2,HPX,DOCK3,SFRP5,SMARCC2,ITPK1,SORD,FGF7,RHCG,SPG7,COPS3,PCTP,EPN3,SGSM2,NPC1,SECTM1,CBX4,ERBB2,SIK1,IL22RA1,PSMA5,SFT2D2,PRUNE,GOLPH3L,MEIS1,UBXN4,POLR2D,ABCA12,RPL37,SKP2,ARHGAP26,GFRA3,GGCT,KCTD7,CCT6A,PRDM14,IFNA1,SIGMAR1,NTRK2,NACC2,USP6NL,HABP2,LIN7C,SLC43A1,ENDOD1,RPS3,SCN2B,ARID5B,PRSS23,PTS,OXSM,NARS2,BARX2,BICD1,RNF219,ZC3H13,TCF7L1,NIPBL,GPD1L,GMCL1,FAM21A,GGPS1,MED21,RIOK2,HGD,GTF2E1,CFDP1,GRAP,ABCA6,WNT7A,XPC,ACAA2,ODF1,LONP2,AKR1B1,DEPTOR,CSF1R,ATP1B3,SMC2,STOM,PCDH1,AIFM1,COX6A2,FZD1,CCNB2,PEX10,SMAD6,ABHD3,HIST1H2BD,BTN3A1,HTR6,FCER1G,WNT4,ARAF,OGFR,CBR3,NPTN,NR2F6,AIRE,FGFR4,PTCD1,DCUN1D1,ACOX1,SSTR5,NEU3,GNG3,USP24,AGL,ARPC5,C2orf47,ALPPL2,CCKAR,NKX6-1,ALB,SNRK,TDGF1,OSBPL11,MFI2,MST1R,ETNPPL,HMGB2,ICE1,F2RL2,WDR41,GALNT10,LMTK2,ABCB8,FASTK,AP5Z1,DCSTAMP,GEM,ALDH1A1,COL14A1,WRN,NGB,WAPAL,FAM35A,TTLL5,AMN,HEATR3,COPS2,CLDN10,TRIM44,ATMIN,HSP90B1,KIAA0101,GPR182,CACNG2,NAB2,METTL21B,MAP1A,COQ4,TRIM68,MVD,WNT10B,TUBA1A,CYP2A6,AXL,TSR1,PELP1,ECI1,SLC22A11,PNOC,ANTXR1,MGMT,TRIM8,PRL,NHLH1,CCL11,PYGO1,BUB1,INSL5,XPO6,RNASE2,REEP4,TACR1,MZB1,CTRB2,STARD5,COPS6,FOXI1,POP7,CES3,OR1A1,B3GNT2,MRPL39,RBFA,STX18,BRD3,SYNPO2,ANKRD2,SLAMF1,SPRR1B,MRPL13,OGG1,ISG20,NEUROD2,SEMA4C,PRND,GLB1,OR10H3,EIF2AK3,TBL2,MT1E,HTR1E,TUT1,MRPL48,CLOCK,SNED1,PSG1,MARCH3,VPS41,TERT,CA5A,SLCO4C1,NR1D2,FOSL1,HSPA6,RASGRP1,ISCU,KRT2,COQ2,PPARD,CASP3,AQP1,ACOT1,EMR1,KLK10,MSL2,UCP2,PLA2G1B,CD84,TCAP,OR1E1,PRKDC,PHKB,KLK2,CTC1,USP20,GORASP1,DNAJA2,PER1,METTL1,PPFIBP1,CRAT,PEX7,NDUFS8,CSTF3,AHCYL2,AGGF1,SFTPC,DLGAP1,OSBPL2,BIN1,CLK4,CYC1,ADRBK2,CES2,WDTC1,DUOX1,SCMH1,FUT7,MPI,SUMO4,CETN1,GCSH,TRIP10,NPEPPS,PLA2G16,MLXIPL,ASB8,KRI1,WIPF2,CNOT1,ME2,TNIP2,DIAPH2,CDC25C,GEMIN4,SLC16A8,ETV4,FADS1,LPHN2,ZMYM4,CD6,ISG20L2,UCP3,TRIM25,ZNF771,AATK,CYP2B6,SAV1,PPP2R2A,PLAG1,MED16,TNP2,CYP11B2,SRSF7,RIC8A,SRRM1,SMCHD1,CLGN,MED25,RORC,MDH2,CCT6B,ATP13A2,THNSL2,CSF1,XPOT,PAWR,TRAIP,PDE6G,ADAP2,PSMG1,SPSB1,SOCS3,CNTN2,FANCF,HGS,BCAN,WT1,PKP3,KLHL22,KCNJ15,EPHB3,RARB,MFSD10,GH2,FOXL2,UBA7,NR2C1,TTF1,TRMT11,COQ6,HAP1,EXOC7,CACNA1H,TCFL5,C2CD3,ZMIZ1,PPIL2,USP16,GPR125,CCIN,WASF3,TBX10,FOXD2,TCP11L1,PPFIA3,RAD51C,FIP1L1,SYNM,PLS1,AZIN1,ARHGEF1,SLC22A8,CECR5,NXN,MMP25,CRISP1,MRPL35,BAG5,BRIX1,RASGRP2,ARHGAP6,MKL2,GRAP2,TRIO,RGS12,NELFB,KIR2DL4,IDS,TPST2,PAX4,DOC2A,CAPRIN1,RAP1GDS1,SGK2,OSTF1,DMP1,TUBB4B,WNK1,RNF13,RANBP3,ICAM4,OAS2,FAIM,POU1F1,ADCY2,SERINC1,JAK1,FOXN3,PKN1,BRE,TNFSF13,TLDC1,GJA4,PRELP,ESR2,PSPC1,DHRS2,MGAT3,CA7,MTMR2,ZC3H7B,PMEPA1,SPAM1,DUSP9,SLC6A20,CRKL,VPS72,WDR91,WLS,PLSCR4,FMOD,GPBP1L1,TDRD7,ANO1,THSD4,MYH7,LMX1B,DPF1,TBCD,SORBS2,UBQLN3,PRPF39,PDLIM7,SLC25A46,TAT,ACSL5,PUS7,PIGR,ATN1,FDPS,PIK3R4,ATP10A,BICD2,SCRIB,DCTD,GM2A,BCL11B,DOK3,IRF5,SH3BP1,FXR1,POT1,PAX5,NF1,CX3CR1,WDR55,HELZ,FZD6,CACNA1G,KIRREL,XRCC2,MYOZ1,BABAM1,FGF17,RGR,TECPR2,PCNT,CELA2A,G3BP2,ZNF675,TRRAP,MTCL1,SPINK5,PTPRF,MAK16,F8,CUX1,ATP2B2,LZTS3,CDC16,NRP2,ETF1,MMP17,ITGB1BP1,FUT8,ADARB1,GYPA,UBA3,ZEB1,ATP1A2,INPP5F,GPX7,AKAP13,PJA2,MAP3K3,PJA1,PAX9,MOK,PSMB5,AKR7A3,TFB2M,MTR,AGT,RAB4A,JMJD4,ADCK3,IARS2,RRP15,PFKFB2,TFB1M,ETNK2,RGS17,CHIT1,SYT2,LMOD1,KATNA1,PTGS2,IVNS1ABP,EPM2A,NPHS2,CACYBP,FMO4,AHI1,XCL2,UAP1,CTGF,NR1I3,UFC1,PFDN2,SLAMF7,PEA15,KCNJ10,RRNAD1,KIAA0907,PYGO2,MAN1A1,RPS27,RAB13,NPR1,S100A13,S100A2,SMCP,CUZD1,CDC40,ANXA9,HTRA1,SEC63,TACC2,QRSL1,PNLIP,SCAF11,TCF7L2,SHOC2,CD2,RNGTT,BCAS2,CYB5R4,ADORA3,PDCD11,DNASE1L1,OPN1LW,IRAK1,EXTL2,TRMT13,SLC35A3,BTRC,PTBP2,GCLM,FAM178A,DR1,TMED5,GABRA3,GABRE,SEC31B,SLC17A9,CPN1,FMR1,ENTPD7,HS2ST1,HPSE2,LMBRD1,CRTAC1,PI4K2A,SLC9A6,DNAJB4,FRAT2,ENTPD1,GPR110,ACOT11,NOC3L,RUNX2,RNF113A,NDOR1,ECHDC2,UBE2A,MAN1B1,LHX3,MKNK1,RAD54L,ADIRF,RALGDS,CEL,TOE1,GHITM,PLK3,MAT1A,CD40,SFTPD,ABL1,GPR107,NUP188,GUCA2B,RIMS3,BEX4,ZMPSTE24,HNRNPH2,TBCC,OSER1,JPH2,FHL3,SF3A3,CSF3R,TREM2,SLC29A3,SGPL1,ENG,NCDN,ITM2A,SLC2A8,RNF19B,RABGAP1,CXCR3,FABP3,RCC1,PTAFR,PHF20,PRPF4,IL2RG,SPAG4,NIPAL3,TXN,P2RY4,EDA,STARD8,COL11A2,PINK1,MAGED2,CDA,ATF6B,ALDH4A1,F7,ASXL1,C6orf25,MAP3K19,CTRC,TPP2,CCDC22,TNFRSF1B,CCDC93,PTPRH,NPPB,PPP1R10,PRUNE2,TRIM31,UGGT2,RBM3,EXOSC10,NEBL,FOXH1,PIK3CD,STAM,DNAJC11,TNFRSF25,TCOF1,CUBN,PCDH9,PCDH17,RSU1,PTER,FLRT3,ITGA8,FAM171A1,NPHP4,NMT2,TP73,REEP2,CA9,ARHGEF16,LPAR6,NUP160,PANK4,DNAAF1,GABRD,SEPHS1,PRKD3,KIF24,LGR4,SLC23A2,PRDX4,ADRA1D,SNX2,YPEL5,RPS6KA3,REEP5,HGSNAT,GPR64,IL2RA,RPP40,CAAP1,ECI2,ALOX15B,IFNA21,BPHL,SLTM,SERPINB9,PDE4A,CER1,SHROOM2,NFIB,DUT,SDC1,ITSN1,GP2,HR,GCAT,HMG20A,NUPL1,TNK2,KCNV2,VLDLR,SOD3,MTMR12,SACS,FECH,SLC7A4,SNRNP25,RNMT,OR12D2,EOGT,TRAPPC9,CAMSAP1,RNF216,KLK14,KLK7,GNG4,KCNJ14,TBP,MLLT4,MAG,GPS1,STX2,TAOK3,SDK2,KCNJ1,ABCA5,CERS6,BAZ2B,GRK5,DPEP1,SPOP,TGFBRAP1,PRCP,LIPT1,CDKN2D,ARAP1,ST3GAL2,RENBP,HMMR,PTTG1,ELMO3,GAPVD1,PRC1,FBXO38,PPP2R2B,CCT4,DNASE1L3,SLC28A1,PCDHGA2,CCL8,CCDC109B,AKTIP,BRD7,CXXC4,TGFB1I1,GIT1,SLC11A2,QPRT,A1CF,DHRS7B,CCDC51,ADM2,CD59,COA1,ADNP,UMOD,CTAGE5,PDE1C,PGM5,IQSEC2,ZC3H7A,UBN1,TIMM17B,CSNK1E,UBE2G1,WNT5B,EIF4ENIF1,MAP2K7,EPHB1,RDH16,GGT5,CAMK2A,FRMD4B,USP34,ZSWIM8,UBE2D2,GIN1,MYO5A,TSSK2,PAICS,BACH1,PLA2G2A,TXNRD2,ASXL2,CUL4B,LRRC32,MYH8,BCL6,ZBTB40,CYP4F11,CTNNA2,SLC8A1,FBXO11,ESRRA,XPO1,CACNA1I,CHRNA2,APOBEC3G,KCTD17,PRR16,MEX3C,SUN2,OBSL1,GRAMD4,SMS,MARK2,TF,SETD5,THADA,ADRA2C,TBC1D10B,PSMD14,KDM3A,FCHSD2,CXCR4,CATSPERG,PLD3,ALDH7A1,ARTN,UGT2B11,CREB1,OAS1,RNF24,CRISP3,ACAD10,GLI2,SLC25A17,BORCS8-MEF2B,MT1G,TKT,PTPN6,STRAP,CDC7,EPS15L1,TMX1,KLHL24,MAN2B1,MECP2,CTAGE9,KIAA0226L,CLDN9,CHAC1,PRF1,HLA-DMB,SLC6A12,TNIK,SATB1,BEST1,TEN1-CDK3,DNAI2,LDB3,MYO16,MTO1,SLC12A3,ZDHHC17,GRB7,PPP1R9A,TRPV4,GPR124,LAX1,SYBU,TNPO2,EBNA1BP2,RFC5,DCTN2,WSB2,SCN5A,FGFR2,MAP2K4,TBC1D9,PTPRC,CSGALNACT1,KIF21B,ARHGAP22,RPP14,STXBP2,GSDMB,CACTIN,CBFB,INTS12,SLC35A2,EIF2B1,DDX46,FBXO24,GALNT11,PLTP,FHIT,ANP32A,RPL37A,U2SURP,SEPHS2,ADAMTS9,SELT,PRKRIP1,ADAM9,SLITRK3,RAB9A,PLSCR2,CASR,SRSF10,NR6A1,ARMC8,CNIH4,LAT2,BAG1,TFAM,MFN1,KRTAP5-8,HSD17B4,CSNK1A1,LSM6,SLIT2,STIMATE-MUSTN1,GOLGA8O,DAPP1,CDK18,TUSC3,FBN2,PRPS1L1,ABLIM3,INPP4B,PALLD,RAI14,CEP192,KIF13B,RHOBTB2,LEPROTL1,TCEA1,DLX6,GFRA2,UNC13A,STK3,AMPD1,INTS8,PLCD1,PTDSS1,PCDHGA1,PGBD5,TYK2,IL32,SPA17,KDM2A,RBM4B,GRK6,CRYAB,RAP1GAP,FZD4,ATP6V0B,CCNJ,CCS,MUC5B,DPF2,MYO18A,SFSWAP,BCORL1,LDHC,CUL7,PDCD2,ANKRD49,GRM4,CYP2E1,GPR161,RHBG,CCR3,PCYT2,DAG1,ADAP1,PLXNB3,BCAT1,AUNIP,NUP153,GALNT6,PDGFRL,KRT86,MYCBP2,CPSF3L,GTF2H3,ATP8B1,APPL2,PAH,BEST2,BRF1,CYP4F12,COPZ1,CALCOCO1,CLEC5A,C14orf79,HOPX,VTI1B,SERPINA4,RGS6,MOAP1,SPTB,SRP54,AKT1,VIPAS39,ETFA,TLE3,TLN2,OBSCN,KCTD13,KLHL36,CEMP1,DNAH2,CARD14,NUP88,TOM1L1,ENSP00000461324,CTDNEP1,VEZF1,ADCYAP1,TEFM,RBM8A,RNF43,SLC16A3,TIMM23,MAP4K1,POP4,TMC6,TNFRSF11A,C19orf40,CIRBP,LPPR2,SEMA6B,ERC1,EML2,ACP5,FPR2,TNFSF14,GABRQ,LSM4,KLK13,FGF21,SPIB,GMFG,SUGP2,DNAJC3,ALDH3B1,RER1,APLNR,HEBP2,FKBP8,GAN,KCNJ6,HIST1H2BM,SPCS1,NLRP1,GNAZ,YAP1,HIST1H4A,EHD1,LRRC8E,EPHX1,VEGFC,SYN2,NMRK2,SRSF8,IQSEC1,MTERF4,ZNF205,OPLAH,PDZD7,CYP3A7,ADRA2B,SOCS2,SLC38A3,C18orf25,RSRC1,ABCG4,FMO1,CSDE1,GNB1,RECQL4,IRX4,PLCG2,PEX12,HMGN3,PCSK6,PPIP5K2,ALMS1,TAC3,HIST1H2BE,TCTN3,ARFRP1,PACSIN1,ATRAID,MREG,EPPK1,GLYAT,KIAA1033
## 17 CYP51A1,CPA1,UBR7,XYLT2,RTFDC1,LCP2,HDAC7,DERL2,KDM4B,PYGM,BCL3,MKRN2,PTPN18,TBX21,MRPS34,MAP2K5,C12orf5,FAP,SLC22A4,CETP,SIRT4,FMO2,PSMD5,MMP11,TTLL12,TXN2,GZMH,PIGH,EIF5,VRK1,PNN,CYP24A1,PYGB,BIRC7,IDH3G,DHODH,FA2H,CYP4F3,CYP4F2,EPHX3,TGFB1,ZNRF4,SLC5A5,HGF,UBE2D4,CPA2,FKBP14,NOD1,ST6GALNAC2,UTP18,CPD,KAT2A,WFS1,KRR1,CHPT1,SNX3,IL4,PCDH12,MSH2,SLC11A1,PCGF1,ACADL,NEU2,ODC1,ORC2,SLC19A2,TTR,RNF103,C2orf43,PANK3,COIL,CAT,FTSJ2,ACTR5,ATP5E,PEPD,LIPE,BMP4,THOC2,IDUA,APOL5,ALDH1A2,KLK12,CMA1,ARHGEF6,MAPK8IP3,UGT2A3,CUL9,PLVAP,HRC,SLC35D2,CAPN7,USP29,NR0B2,PER2,SCLY,RPA1,H3F3B,KDM6B,VPS4A,ALDH3B2,CHRM3,MACROD1,CCDC59,VRTN,FOLH1,HTRA2,BCO1,HTR2B,NUPL2,DDX56,NKX2-8,MRPS18B,GTF2H4,CLPS,MRPL15,PLCB2,CCBL2,SLC3A1,ASNSD1,PPWD1,NUP133,MAN2A1,RNF138,SCARB1,TAOK1,BTBD1,TIPIN,ATP5B,PIK3C3,WIPI1,SMAD2,RHBDF1,TELO2,GINS1,SPTLC1,RPL8,HPN,MARK4,PIAS4,MAPK3,DDX18,P4HA1,LCN1,ACVR1,KAT2B,GTF3C3,COQ10B,HSF4,SLC5A7,MCM6,DARS,ARID4B,CHST10,PIKFYVE,CSTA,SLC2A9,RAB7A,GOLPH3,PIP5K1B,POLA2,USP4,MCCC1,EIF4H,HPX,ITPK1,SORD,FGF7,SPG7,COPS3,PCTP,NPC1,CBX4,ERBB2,SIK1,PSMA5,PRUNE,UBXN4,POLR2D,RPL37,SKP2,GFRA3,GGCT,KCTD7,PRDM14,NTRK2,HABP2,ENDOD1,RPS3,PRSS23,PTS,OXSM,NARS2,BICD1,RNF219,ZC3H13,NIPBL,GPD1L,GGPS1,MED21,RIOK2,HGD,GTF2E1,XPC,ACAA2,LONP2,AKR1B1,CSF1R,PEX10,ABHD3,HIST1H2BD,BTN3A1,FCER1G,ARAF,CBR3,NR2F6,AIRE,FGFR4,PTCD1,DCUN1D1,ACOX1,NEU3,USP24,AGL,NKX6-1,ALB,SNRK,TDGF1,MFI2,MST1R,ETNPPL,HMGB2,ICE1,GALNT10,LMTK2,FASTK,AP5Z1,ALDH1A1,WRN,FAM35A,TTLL5,AMN,COPS2,TRIM44,HSP90B1,KIAA0101,CACNG2,METTL21B,COQ4,TRIM68,MVD,WNT10B,CYP2A6,AXL,TSR1,PELP1,KLK1,ECI1,SLC22A11,MGMT,TRIM8,PRL,CCL11,BUB1,RNASE2,CTRB2,COPS6,POP7,CES3,B3GNT2,MRPL39,RBFA,SYNPO2,SPRR1B,MRPL13,OGG1,ISG20,NEUROD2,GLB1,EIF2AK3,TUT1,MRPL48,CLOCK,MARCH3,TERT,NR1D2,RASGRP1,KRT2,COQ2,PPARD,CASP3,ACOT1,KLK10,MSL2,PLA2G1B,PRKDC,PHKB,KLK2,CTC1,USP20,GORASP1,CD46,PER1,METTL1,CRAT,PEX7,CSTF3,AHCYL2,SFTPC,OSBPL2,CLK4,CYC1,ADRBK2,CES2,WDTC1,DUOX1,FUT7,MPI,SUMO4,CETN1,GCSH,NPEPPS,PLA2G16,ASB8,KRI1,CNOT1,ME2,TNIP2,CDC25C,GEMIN4,SLC16A8,FADS1,ISG20L2,UCP3,TRIM25,AATK,CYP2B6,PPP2R2A,MED16,CYP11B2,SRSF7,SRRM1,SMCHD1,MED25,RORC,MDH2,ATP13A2,THNSL2,CSF1,PAWR,TRAIP,SPSB1,SOCS3,CNTN2,FANCF,HGS,BCAN,WT1,KLHL22,EPHB3,RARB,FOXL2,UBA7,NR2C1,TTF1,TRMT11,COQ6,CACNA1H,TCFL5,C2CD3,ZMIZ1,PPIL2,USP16,RAD51C,FIP1L1,AZIN1,CECR5,MMP25,CELA3B,MRPL35,TASP1,TRIO,NELFB,IDS,TPST2,SGK2,DMP1,WNK1,RNF13,OAS2,ADCY2,SERINC1,JAK1,PKN1,BRE,PRELP,ESR2,PSPC1,APOL3,DHRS2,MGAT3,MTMR2,ZC3H7B,SPAM1,DUSP9,CRKL,FMOD,GPBP1L1,THSD4,DPF1,UBQLN3,PRPF39,TAT,ACSL5,PUS7,FDPS,PIK3R4,DCTD,GM2A,BCL11B,POT1,PAX5,NF1,WDR55,XRCC2,BABAM1,FGF17,RGR,CELA2A,TRRAP,PTPRF,MAK16,F8,CDC16,NRP2,ETF1,MMP17,FUT8,ADARB1,UBA3,INPP5F,AKAP13,PJA2,MAP3K3,PJA1,MOK,PSMB5,AKR7A3,TFB2M,MTR,AGT,RAB4A,JMJD4,ADCK3,IARS2,RRP15,PFKFB2,TFB1M,ETNK2,CHIT1,PTGS2,IVNS1ABP,EPM2A,UAP1,CTGF,NR1I3,UFC1,PEA15,RRNAD1,KIAA0907,MAN1A1,RPS27,RAB13,NPR1,S100A13,CUZD1,CDC40,HTRA1,QRSL1,PREP,PNLIP,SCAF11,TCF7L2,RNGTT,BCAS2,PDCD11,DNASE1L1,OPN1LW,IRAK1,EXTL2,TRMT13,SLC35A3,BTRC,PTBP2,GCLM,FAM178A,DR1,CPN1,FMR1,ENTPD7,HS2ST1,HPSE2,LMBRD1,PI4K2A,ENTPD1,ACOT11,RUNX2,RNF113A,ECHDC2,UBE2A,MAN1B1,MKNK1,RAD54L,CEL,TOE1,PLK3,MAT1A,SFTPD,ABL1,NUP188,ZMPSTE24,HNRNPH2,SF3A3,SGPL1,ENG,SLC2A8,RNF19B,CXCR3,FABP3,PTAFR,PHF20,PRPF4,IL2RG,TXN,EDA,PINK1,CDA,ALDH4A1,F7,ASXL1,MAP3K19,CELA2B,CTRC,TPP2,CCDC22,PTPRH,NPPB,PRUNE2,TRIM31,UGGT2,RBM3,EXOSC10,PIK3CD,STAM,TCOF1,CUBN,NMT2,TP73,NUP160,PANK4,SEPHS1,PRKD3,SLC23A2,PRDX4,RPS6KA3,HGSNAT,IL2RA,RPP40,ECI2,ALOX15B,BPHL,PDE4A,NFIB,DUT,SDC1,HR,GCAT,NUPL1,TNK2,VLDLR,MTMR12,FECH,SNRNP25,RNMT,EOGT,RNF216,KLK14,KLK7,TBP,GPS1,TAOK3,CERS6,GRK5,DPEP1,SPOP,PRCP,LIPT1,CDKN2D,ST3GAL2,RENBP,HMMR,PTTG1,FBXO38,PPP2R2B,DNASE1L3,SLC28A1,CCL8,AKTIP,TGFB1I1,SLC11A2,QPRT,A1CF,DHRS7B,ADM2,PGM5,ZC3H7A,CSNK1E,UBE2G1,MAP2K7,EPHB1,RDH16,GGT5,CAMK2A,USP34,UBE2D2,CAPN11,GIN1,MYO5A,TSSK2,PAICS,BACH1,PLA2G2A,ZG16,ASXL2,CUL4B,MYH8,CYP4F11,FBXO11,ESRRA,APOBEC3G,KCTD17,MEX3C,OBSL1,SMS,MARK2,TF,SETD5,THADA,PSMD14,KDM3A,PLD3,ALDH7A1,ARTN,UGT2B11,CREB1,OAS1,RNF24,ACAD10,SLC25A17,TKT,PTPN6,STRAP,CDC7,KLHL24,MAN2B1,MECP2,KIAA0226L,CHAC1,TNIK,SATB1,TEN1-CDK3,MTO1,ZDHHC17,EBNA1BP2,RFC5,WSB2,FGFR2,MAP2K4,CNBP,PTPRC,CSGALNACT1,RPP14,CACTIN,CBFB,INTS12,SLC35A2,EIF2B1,DDX46,FBXO24,GALNT11,PLTP,CPB1,FHIT,RPL37A,U2SURP,SEPHS2,ADAMTS9,SELT,PRKRIP1,ADAM9,CASR,SRSF10,NR6A1,ARMC8,TFAM,MFN1,HSD17B4,CSNK1A1,HGFAC,LSM6,DAPP1,CDK18,TUSC3,PRPS1L1,ABLIM3,INPP4B,TCEA1,GFRA2,UNC13A,STK3,AMPD1,INTS8,PLCD1,PTDSS1,PGBD5,TYK2,KDM2A,RBM4B,GRK6,CRYAB,CCS,MUC5B,DPF2,MYO18A,SFSWAP,LDHC,CUL7,CYP2E1,PCYT2,DAG1,BCAT1,AUNIP,NUP153,GALNT6,PDGFRL,MYCBP2,CPSF3L,GTF2H3,ATP8B1,PAH,BRF1,CYP4F12,SPTB,AKT1,VIPAS39,ETFA,OBSCN,KCTD13,KLHL36,NUP88,TOM1L1,ENSP00000461324,CTDNEP1,TEFM,RBM8A,RNF43,SLC16A3,MAP4K1,POP4,C19orf40,LPPR2,ERC1,ACP5,KLK15,LSM4,KLK13,GMFG,SUGP2,KLK11,DNAJC3,ALDH3B1,FKBP8,GAN,HIST1H2BM,SPPL2B,SPCS1,YAP1,HIST1H4A,LRRC8E,EPHX1,NMRK2,SRSF8,MTERF4,OPLAH,CYP3A7,SOCS2,C18orf25,RSRC1,FMO1,CSDE1,RECQL4,PLCG2,PEX12,PCSK6,PPIP5K2,HIST1H2BE,GALE,GLYAT
## 18 CYP51A1,CPA1,UBR7,XYLT2,SCTR,RTFDC1,LCP2,HDAC7,DERL2,KDM4B,PYGM,BCL3,MKRN2,PTPN18,TBX21,MRPS34,MAP2K5,C12orf5,FAP,ITGB4,SLC22A4,CETP,SIRT4,FMO2,PSMD5,NDUFB7,SNAP29,MMP11,TTLL12,TXN2,GZMH,PIGH,EIF5,VRK1,PNN,CYP24A1,PYGB,BIRC7,TXNL1,IDH3G,DHODH,FA2H,CYP4F3,CYP4F2,EPHX3,TGFB1,ZNRF4,SLC5A5,HGF,UBE2D4,CPA2,FKBP14,NOD1,ST6GALNAC2,UTP18,CPD,KAT2A,WFS1,KRR1,CHPT1,SNX3,IL4,PCDH12,MSH2,SLC11A1,PCGF1,ACADL,NEU2,ODC1,ORC2,SLC19A2,TTR,RNF103,C2orf43,PANK3,COIL,CAT,FTSJ2,ACTR5,ATP5E,PEPD,LIPE,BMP4,THOC2,IDUA,APOL5,ALDH1A2,KLK12,CMA1,ARHGEF6,MAPK8IP3,UGT2A3,CUL9,PLVAP,HRC,PRDM12,SLC35D2,CAPN7,USP29,NR0B2,PER2,SCLY,RPA1,H3F3B,KDM6B,VPS4A,ALDH3B2,CHRM3,MACROD1,CCDC59,VRTN,FOLH1,HTRA2,BCO1,HTR2B,NUPL2,DDX56,NKX2-8,MRPS18B,GTF2H4,CLPS,MRPL15,NDUFAF1,PLCB2,CCBL2,SLC3A1,ASNSD1,PPWD1,NUP133,MAN2A1,RNF138,TTC19,SCARB1,SLC6A4,TAOK1,BTBD1,TIPIN,CILP,ATP5B,PIK3C3,WIPI1,SMAD2,RHBDF1,TELO2,GINS1,SPTLC1,RPL8,HPN,MARK4,PIAS4,MAPK3,DDX18,P4HA1,LCN1,ACVR1,KAT2B,GTF3C3,COQ10B,HSF4,SLC5A7,MCM6,DARS,ARID4B,CHST10,PIKFYVE,CSTA,NNT,SLC2A9,RAB7A,GOLPH3,PIP5K1B,POLA2,USP4,MCCC1,EIF4H,HPX,ITPK1,SORD,FGF7,SPG7,COPS3,PCTP,NPC1,CBX4,ERBB2,SIK1,PSMA5,PRUNE,UBXN4,POLR2D,RPL37,SKP2,GFRA3,GGCT,KCTD7,PRDM14,NTRK2,HABP2,TMX2,ENDOD1,RPS3,ARID5B,PRSS23,PTS,OXSM,NARS2,BICD1,RNF219,ZC3H13,NIPBL,GPD1L,GGPS1,MED21,RIOK2,HGD,GTF2E1,XPC,ACAA2,LONP2,AKR1B1,CSF1R,AIFM1,COX6A2,PEX10,ABHD3,HIST1H2BD,BTN3A1,FCER1G,WNT4,ARAF,CBR3,NR2F6,AIRE,FGFR4,PTCD1,DCUN1D1,ACOX1,NEU3,USP24,AGL,ALPPL2,NKX6-1,ALB,SNRK,TDGF1,MFI2,MST1R,ETNPPL,HMGB2,ICE1,WDR41,GALNT10,LMTK2,FASTK,AP5Z1,ALDH1A1,WRN,FAM35A,TTLL5,AMN,COPS2,TRIM44,HSP90B1,KIAA0101,CACNG2,METTL21B,COQ4,TRIM68,MVD,WNT10B,CYP2A6,AXL,TSR1,PELP1,KLK1,ECI1,SLC22A11,MGMT,TRIM8,PRL,CCL11,BUB1,RNASE2,CTRB2,COPS6,POP7,CES3,B3GNT2,MRPL39,RBFA,SYNPO2,SPRR1B,MRPL13,OGG1,ISG20,NEUROD2,GLB1,EIF2AK3,TUT1,MRPL48,CLOCK,MARCH3,VPS41,TERT,CA5A,NR1D2,RASGRP1,ISCU,KRT2,COQ2,PPARD,CASP3,ACOT1,KLK10,MSL2,UCP2,PLA2G1B,CD84,PRKDC,PHKB,KLK2,CTC1,USP20,GORASP1,CD46,PER1,METTL1,CRAT,PEX7,NDUFS8,CSTF3,AHCYL2,SFTPC,OSBPL2,CLK4,CYC1,ADRBK2,CES2,WDTC1,DUOX1,FUT7,MPI,SUMO4,CETN1,GCSH,NPEPPS,PLA2G16,ASB8,KRI1,CNOT1,ME2,TNIP2,CDC25C,GEMIN4,SLC16A8,FADS1,ISG20L2,UCP3,TRIM25,AATK,CYP2B6,PPP2R2A,MED16,CYP11B2,SRSF7,SRRM1,SMCHD1,MED25,RORC,MDH2,ATP13A2,THNSL2,CSF1,PAWR,TRAIP,SPSB1,SOCS3,CNTN2,FANCF,HGS,BCAN,WT1,KLHL22,EPHB3,RARB,FOXL2,UBA7,NR2C1,TTF1,TRMT11,COQ6,HAP1,CACNA1H,TCFL5,C2CD3,ZMIZ1,PPIL2,USP16,RAD51C,FIP1L1,AZIN1,CECR5,NXN,MMP25,CELA3B,MRPL35,TASP1,TRIO,NELFB,IDS,TPST2,SGK2,DMP1,WNK1,RNF13,OAS2,ADCY2,SERINC1,JAK1,PKN1,BRE,PRELP,ESR2,PSPC1,APOL3,DHRS2,MGAT3,CA7,MTMR2,ZC3H7B,SPAM1,DUSP9,CRKL,FMOD,GPBP1L1,THSD4,MYH7,DPF1,UBQLN3,PRPF39,SLC25A46,TAT,ACSL5,PUS7,FDPS,PIK3R4,DCTD,GM2A,BCL11B,POT1,PAX5,NF1,WDR55,XRCC2,BABAM1,FGF17,RGR,TECPR2,CELA2A,TRRAP,PTPRF,MAK16,F8,CDC16,NRP2,ETF1,MMP17,FUT8,ADARB1,UBA3,ATP1A2,INPP5F,GPX7,AKAP13,PJA2,MAP3K3,PJA1,MOK,PSMB5,AKR7A3,TFB2M,MTR,AGT,RAB4A,JMJD4,ADCK3,IARS2,RRP15,PFKFB2,TFB1M,ETNK2,CHIT1,PTGS2,IVNS1ABP,EPM2A,FMO4,UAP1,CTGF,NR1I3,UFC1,NIT1,PEA15,RRNAD1,KIAA0907,MAN1A1,RPS27,RAB13,NPR1,S100A13,CUZD1,CDC40,HTRA1,SEC63,QRSL1,PREP,PNLIP,SCAF11,TCF7L2,RNGTT,BCAS2,CYB5R4,PDCD11,DNASE1L1,OPN1LW,IRAK1,EXTL2,TRMT13,SLC35A3,BTRC,PTBP2,GCLM,FAM178A,DR1,CPN1,FMR1,ENTPD7,HS2ST1,HPSE2,LMBRD1,PI4K2A,ENTPD1,ACOT11,RUNX2,RNF113A,NDOR1,ECHDC2,UBE2A,MAN1B1,MKNK1,RAD54L,CEL,TOE1,PLK3,MAT1A,SFTPD,ABL1,NUP188,ZMPSTE24,HNRNPH2,SF3A3,SGPL1,ENG,SLC2A8,RNF19B,CXCR3,FABP3,PTAFR,PHF20,PRPF4,IL2RG,TXN,EDA,PINK1,CDA,ALDH4A1,F7,ASXL1,MAP3K19,CELA2B,CTRC,TPP2,CCDC22,PTPRH,NPPB,PRUNE2,TRIM31,UGGT2,RBM3,EXOSC10,PIK3CD,STAM,TCOF1,CUBN,PTER,NMT2,TP73,CA9,NUP160,PANK4,SEPHS1,PRKD3,SLC23A2,PRDX4,RPS6KA3,HGSNAT,IL2RA,RPP40,ECI2,ALOX15B,BPHL,PDE4A,NFIB,DUT,SDC1,HR,GCAT,NUPL1,TNK2,VLDLR,SOD3,MTMR12,FECH,SNRNP25,RNMT,EOGT,RNF216,KLK14,KLK7,TBP,GPS1,TAOK3,CERS6,GRK5,DPEP1,SPOP,PRCP,LIPT1,CDKN2D,ST3GAL2,RENBP,HMMR,PTTG1,FBXO38,PPP2R2B,DNASE1L3,SLC28A1,CCL8,AKTIP,TGFB1I1,SLC11A2,QPRT,A1CF,DHRS7B,ADM2,PGM5,ZC3H7A,CSNK1E,UBE2G1,MAP2K7,EPHB1,RDH16,GGT5,CAMK2A,USP34,UBE2D2,CAPN11,GIN1,MYO5A,TSSK2,PAICS,BACH1,PLA2G2A,TXNRD2,ZG16,ASXL2,CUL4B,MYH8,CYP4F11,FBXO11,ESRRA,APOBEC3G,KCTD17,MEX3C,OBSL1,SMS,MARK2,TF,SETD5,THADA,PSMD14,KDM3A,PLD3,ALDH7A1,ARTN,UGT2B11,CREB1,OAS1,RNF24,ACAD10,SLC25A17,TKT,PTPN6,STRAP,CDC7,TMX1,KLHL24,MAN2B1,MECP2,KIAA0226L,CHAC1,TNIK,SATB1,TEN1-CDK3,MTO1,ZDHHC17,TRPV4,EBNA1BP2,RFC5,WSB2,FGFR2,MAP2K4,CNBP,PTPRC,CSGALNACT1,RPP14,CACTIN,CBFB,INTS12,SLC35A2,EIF2B1,DDX46,FBXO24,GALNT11,PLTP,CPB1,FHIT,RPL37A,U2SURP,SEPHS2,ADAMTS9,SELT,PRKRIP1,ADAM9,CASR,SRSF10,NR6A1,ARMC8,TFAM,MFN1,HSD17B4,CSNK1A1,HGFAC,LSM6,DAPP1,CDK18,TUSC3,PRPS1L1,ABLIM3,INPP4B,TCEA1,GFRA2,UNC13A,STK3,AMPD1,INTS8,PLCD1,PTDSS1,PGBD5,TYK2,KDM2A,RBM4B,GRK6,CRYAB,CCS,MUC5B,DPF2,MYO18A,SFSWAP,LDHC,CUL7,CYP2E1,PCYT2,DAG1,BCAT1,AUNIP,NUP153,GALNT6,PDGFRL,MYCBP2,CPSF3L,GTF2H3,ATP8B1,APPL2,PAH,BRF1,CYP4F12,SPTB,AKT1,VIPAS39,ETFA,OBSCN,KCTD13,KLHL36,NUP88,TOM1L1,ENSP00000461324,CTDNEP1,ADCYAP1,TEFM,RBM8A,RNF43,SLC16A3,MAP4K1,POP4,C19orf40,LPPR2,ERC1,ACP5,KLK15,LSM4,KLK13,GMFG,SUGP2,KLK11,DNAJC3,ALDH3B1,FKBP8,GAN,HIST1H2BM,SPPL2B,SPCS1,YAP1,HIST1H4A,LRRC8E,EPHX1,NMRK2,SRSF8,MTERF4,OPLAH,CYP3A7,SOCS2,C18orf25,RSRC1,FMO1,CSDE1,RECQL4,PLCG2,PEX12,PCSK6,PPIP5K2,HIST1H2BE,GALE,GLYAT
## 19 CYP51A1,CPA1,UBR7,XYLT2,RTFDC1,HDAC7,DERL2,KDM4B,PYGM,BCL3,MKRN2,PTPN18,TBX21,MRPS34,MAP2K5,FAP,SLC22A4,CETP,SIRT4,PSMD5,MMP11,TTLL12,TXN2,GZMH,PIGH,EIF5,VRK1,PNN,CYP24A1,PYGB,BIRC7,IDH3G,DHODH,FA2H,CYP4F3,CYP4F2,EPHX3,TGFB1,ZNRF4,HGF,UBE2D4,CPA2,FKBP14,NOD1,ST6GALNAC2,UTP18,CPD,KAT2A,WFS1,KRR1,CHPT1,SNX3,IL4,PCDH12,MSH2,PCGF1,ACADL,NEU2,ODC1,ORC2,TTR,RNF103,C2orf43,PANK3,COIL,CAT,FTSJ2,ACTR5,ATP5E,PEPD,LIPE,BMP4,THOC2,IDUA,APOL5,ALDH1A2,KLK12,CMA1,ARHGEF6,MAPK8IP3,UGT2A3,CUL9,PLVAP,HRC,CAPN7,USP29,NR0B2,PER2,SCLY,RPA1,H3F3B,KDM6B,VPS4A,ALDH3B2,CHRM3,MACROD1,CCDC59,VRTN,FOLH1,HTRA2,BCO1,HTR2B,NUPL2,DDX56,NKX2-8,MRPS18B,GTF2H4,CLPS,MRPL15,PLCB2,CCBL2,SLC3A1,ASNSD1,PPWD1,NUP133,MAN2A1,RNF138,SCARB1,TAOK1,BTBD1,TIPIN,ATP5B,PIK3C3,WIPI1,SMAD2,RHBDF1,TELO2,GINS1,SPTLC1,RPL8,HPN,MARK4,PIAS4,MAPK3,DDX18,P4HA1,LCN1,ACVR1,KAT2B,GTF3C3,HSF4,MCM6,DARS,ARID4B,CHST10,PIKFYVE,CSTA,NNT,RAB7A,GOLPH3,PIP5K1B,POLA2,USP4,MCCC1,EIF4H,HPX,ITPK1,SORD,FGF7,SPG7,COPS3,PCTP,NPC1,CBX4,ERBB2,SIK1,PSMA5,UBXN4,POLR2D,RPL37,SKP2,GFRA3,KCTD7,PRDM14,NTRK2,HABP2,ENDOD1,RPS3,PRSS23,PTS,OXSM,NARS2,BICD1,RNF219,ZC3H13,NIPBL,GPD1L,GGPS1,MED21,RIOK2,HGD,GTF2E1,XPC,ACAA2,LONP2,AKR1B1,CSF1R,PEX10,ABHD3,HIST1H2BD,ARAF,NR2F6,FGFR4,PTCD1,DCUN1D1,ACOX1,NEU3,USP24,AGL,NKX6-1,ALB,SNRK,TDGF1,MFI2,MST1R,ETNPPL,HMGB2,ICE1,GALNT10,LMTK2,FASTK,AP5Z1,ALDH1A1,WRN,FAM35A,TTLL5,COPS2,TRIM44,HSP90B1,KIAA0101,METTL21B,TRIM68,MVD,WNT10B,CYP2A6,AXL,TSR1,PELP1,KLK1,ECI1,MGMT,TRIM8,PRL,CCL11,BUB1,RNASE2,CTRB2,COPS6,POP7,CES3,B3GNT2,MRPL39,RBFA,SYNPO2,SPRR1B,MRPL13,OGG1,ISG20,NEUROD2,GLB1,EIF2AK3,TUT1,MRPL48,CLOCK,MARCH3,TERT,NR1D2,RASGRP1,KRT2,COQ2,PPARD,CASP3,ACOT1,KLK10,MSL2,PLA2G1B,PRKDC,PHKB,KLK2,CTC1,USP20,GORASP1,PER1,METTL1,CRAT,PEX7,CSTF3,SFTPC,OSBPL2,CLK4,CYC1,ADRBK2,CES2,WDTC1,FUT7,MPI,SUMO4,CETN1,GCSH,NPEPPS,PLA2G16,ASB8,KRI1,CNOT1,ME2,TNIP2,CDC25C,GEMIN4,FADS1,ISG20L2,UCP3,TRIM25,AATK,CYP2B6,PPP2R2A,MED16,CYP11B2,SRSF7,SRRM1,SMCHD1,MED25,RORC,MDH2,ATP13A2,THNSL2,CSF1,TRAIP,SPSB1,SOCS3,FANCF,HGS,BCAN,WT1,KLHL22,EPHB3,RARB,FOXL2,UBA7,NR2C1,TTF1,TRMT11,CACNA1H,TCFL5,C2CD3,ZMIZ1,PPIL2,USP16,RAD51C,FIP1L1,AZIN1,CECR5,MMP25,CELA3B,MRPL35,TASP1,TRIO,NELFB,IDS,TPST2,SGK2,DMP1,WNK1,RNF13,OAS2,ADCY2,SERINC1,JAK1,PKN1,BRE,ESR2,PSPC1,APOL3,DHRS2,MGAT3,MTMR2,ZC3H7B,SPAM1,DUSP9,CRKL,GPBP1L1,THSD4,DPF1,UBQLN3,PRPF39,TAT,ACSL5,PUS7,FDPS,PIK3R4,DCTD,GM2A,BCL11B,POT1,PAX5,NF1,WDR55,XRCC2,BABAM1,FGF17,RGR,CELA2A,TRRAP,PTPRF,MAK16,F8,CDC16,NRP2,ETF1,MMP17,FUT8,ADARB1,UBA3,INPP5F,AKAP13,PJA2,MAP3K3,PJA1,MOK,PSMB5,TFB2M,MTR,AGT,RAB4A,JMJD4,ADCK3,IARS2,RRP15,PFKFB2,TFB1M,ETNK2,CHIT1,PTGS2,IVNS1ABP,EPM2A,UAP1,CTGF,NR1I3,UFC1,PEA15,RRNAD1,KIAA0907,MAN1A1,RPS27,RAB13,NPR1,CUZD1,CDC40,HTRA1,QRSL1,PREP,PNLIP,SCAF11,TCF7L2,RNGTT,BCAS2,PDCD11,DNASE1L1,OPN1LW,IRAK1,EXTL2,TRMT13,SLC35A3,BTRC,PTBP2,GCLM,FAM178A,DR1,CPN1,FMR1,ENTPD7,HS2ST1,PI4K2A,ENTPD1,ACOT11,RUNX2,RNF113A,ECHDC2,UBE2A,MAN1B1,MKNK1,RAD54L,CEL,TOE1,PLK3,MAT1A,SFTPD,ABL1,NUP188,ZMPSTE24,HNRNPH2,SF3A3,SGPL1,ENG,SLC2A8,RNF19B,FABP3,PHF20,PRPF4,IL2RG,PINK1,CDA,ALDH4A1,F7,ASXL1,MAP3K19,CELA2B,CTRC,TPP2,CCDC22,PTPRH,NPPB,TRIM31,UGGT2,RBM3,EXOSC10,PIK3CD,STAM,TCOF1,CUBN,NMT2,TP73,NUP160,PANK4,SEPHS1,PRKD3,SLC23A2,PRDX4,RPS6KA3,IL2RA,RPP40,ECI2,ALOX15B,BPHL,PDE4A,DUT,SDC1,HR,GCAT,NUPL1,TNK2,VLDLR,MTMR12,SNRNP25,RNMT,EOGT,RNF216,KLK14,KLK7,TBP,GPS1,TAOK3,CERS6,GRK5,DPEP1,SPOP,PRCP,LIPT1,CDKN2D,ST3GAL2,RENBP,PTTG1,FBXO38,PPP2R2B,DNASE1L3,SLC28A1,CCL8,AKTIP,TGFB1I1,QPRT,A1CF,DHRS7B,ADM2,PGM5,ZC3H7A,CSNK1E,UBE2G1,MAP2K7,EPHB1,RDH16,GGT5,CAMK2A,USP34,UBE2D2,CAPN11,GIN1,MYO5A,TSSK2,PAICS,BACH1,PLA2G2A,ASXL2,CUL4B,MYH8,CYP4F11,FBXO11,ESRRA,APOBEC3G,KCTD17,MEX3C,OBSL1,SMS,MARK2,TF,SETD5,THADA,PSMD14,KDM3A,PLD3,ALDH7A1,ARTN,UGT2B11,CREB1,OAS1,RNF24,ACAD10,SLC25A17,TKT,PTPN6,STRAP,CDC7,KLHL24,MAN2B1,MECP2,KIAA0226L,TNIK,SATB1,TEN1-CDK3,MTO1,ZDHHC17,EBNA1BP2,RFC5,WSB2,FGFR2,MAP2K4,CNBP,PTPRC,CSGALNACT1,RPP14,CACTIN,CBFB,INTS12,SLC35A2,EIF2B1,DDX46,FBXO24,GALNT11,PLTP,CPB1,FHIT,RPL37A,U2SURP,SEPHS2,ADAMTS9,SELT,PRKRIP1,ADAM9,CASR,SRSF10,NR6A1,ARMC8,TFAM,MFN1,HSD17B4,CSNK1A1,HGFAC,LSM6,DAPP1,CDK18,TUSC3,PRPS1L1,ABLIM3,INPP4B,TCEA1,GFRA2,STK3,AMPD1,INTS8,PLCD1,PTDSS1,PGBD5,TYK2,KDM2A,RBM4B,GRK6,CRYAB,CCS,MUC5B,DPF2,MYO18A,SFSWAP,LDHC,CUL7,CYP2E1,PCYT2,DAG1,BCAT1,AUNIP,NUP153,GALNT6,PDGFRL,MYCBP2,CPSF3L,GTF2H3,ATP8B1,PAH,BRF1,CYP4F12,SPTB,AKT1,VIPAS39,ETFA,OBSCN,KCTD13,KLHL36,NUP88,TOM1L1,ENSP00000461324,CTDNEP1,TEFM,RBM8A,RNF43,MAP4K1,POP4,C19orf40,LPPR2,ERC1,KLK15,LSM4,KLK13,GMFG,SUGP2,KLK11,DNAJC3,ALDH3B1,FKBP8,GAN,HIST1H2BM,SPPL2B,SPCS1,YAP1,HIST1H4A,LRRC8E,EPHX1,NMRK2,SRSF8,MTERF4,CYP3A7,SOCS2,C18orf25,RSRC1,CSDE1,RECQL4,PLCG2,PEX12,PCSK6,PPIP5K2,HIST1H2BE,GALE,GLYAT
## 20 CPA1,UBR7,XYLT2,RTFDC1,HDAC7,DERL2,KDM4B,PYGM,BCL3,MKRN2,PTPN18,TBX21,MRPS34,MAP2K5,C12orf5,FAP,ITGB4,SLC22A4,CETP,SIRT4,FMO2,PSMD5,NDUFB7,SNAP29,TTLL12,TXN2,PIGH,EIF5,VRK1,PNN,CYP24A1,PYGB,BIRC7,IDH3G,DHODH,FA2H,CYP4F3,CYP4F2,EPHX3,TGFB1,ZNRF4,SLC5A5,HGF,UBE2D4,CPA2,FKBP14,NOD1,ST6GALNAC2,UTP18,CPD,KAT2A,WFS1,KRR1,CHPT1,SNX3,IL4,PCDH12,MSH2,PCGF1,ACADL,NEU2,ODC1,ORC2,SLC19A2,TTR,RNF103,PANK3,COIL,CAT,FTSJ2,ACTR5,ATP5E,PEPD,LIPE,BMP4,THOC2,IDUA,ALDH1A2,CMA1,ARHGEF6,MAPK8IP3,UGT2A3,CUL9,PLVAP,HRC,SLC35D2,USP29,NR0B2,PER2,SCLY,RPA1,H3F3B,KDM6B,VPS4A,ALDH3B2,CHRM3,MACROD1,CCDC59,VRTN,FOLH1,HTRA2,BCO1,HTR2B,NUPL2,DDX56,NKX2-8,MRPS18B,GTF2H4,CLPS,MRPL15,NDUFAF1,PLCB2,CCBL2,ASNSD1,PPWD1,NUP133,MAN2A1,RNF138,SCARB1,SLC6A4,TAOK1,BTBD1,TIPIN,CILP,ATP5B,PIK3C3,WIPI1,SMAD2,TELO2,GINS1,SPTLC1,RPL8,MARK4,PIAS4,MAPK3,DDX18,P4HA1,ACVR1,KAT2B,GTF3C3,COQ10B,HSF4,SLC5A7,MCM6,DARS,ARID4B,CHST10,PIKFYVE,CSTA,NNT,SLC2A9,RAB7A,GOLPH3,PIP5K1B,POLA2,USP4,MCCC1,EIF4H,HPX,ITPK1,SORD,FGF7,COPS3,PCTP,NPC1,CBX4,ERBB2,SIK1,PSMA5,PRUNE,UBXN4,POLR2D,RPL37,SKP2,GFRA3,GGCT,KCTD7,PRDM14,NTRK2,ENDOD1,RPS3,PRSS23,PTS,OXSM,NARS2,BICD1,RNF219,ZC3H13,NIPBL,GPD1L,GGPS1,MED21,RIOK2,HGD,GTF2E1,XPC,ACAA2,LONP2,AKR1B1,CSF1R,COX6A2,PEX10,ABHD3,HIST1H2BD,FCER1G,ARAF,CBR3,NR2F6,FGFR4,PTCD1,DCUN1D1,ACOX1,NEU3,USP24,AGL,ALPPL2,NKX6-1,ALB,SNRK,TDGF1,MFI2,MST1R,ETNPPL,HMGB2,ICE1,WDR41,GALNT10,LMTK2,FASTK,AP5Z1,ALDH1A1,WRN,FAM35A,TTLL5,AMN,COPS2,TRIM44,HSP90B1,KIAA0101,CACNG2,METTL21B,COQ4,TRIM68,MVD,CYP2A6,AXL,TSR1,PELP1,ECI1,SLC22A11,MGMT,TRIM8,PRL,CCL11,BUB1,RNASE2,CTRB2,COPS6,POP7,CES3,B3GNT2,MRPL39,RBFA,SYNPO2,SPRR1B,MRPL13,OGG1,ISG20,NEUROD2,GLB1,EIF2AK3,TUT1,MRPL48,CLOCK,MARCH3,VPS41,TERT,CA5A,NR1D2,RASGRP1,ISCU,KRT2,COQ2,PPARD,CASP3,ACOT1,MSL2,PLA2G1B,CD84,PRKDC,PHKB,CTC1,USP20,GORASP1,PER1,METTL1,CRAT,PEX7,NDUFS8,CSTF3,AHCYL2,SFTPC,OSBPL2,CLK4,CYC1,ADRBK2,CES2,WDTC1,DUOX1,FUT7,MPI,SUMO4,CETN1,GCSH,NPEPPS,PLA2G16,ASB8,KRI1,CNOT1,ME2,TNIP2,CDC25C,GEMIN4,SLC16A8,FADS1,ISG20L2,UCP3,TRIM25,AATK,CYP2B6,PPP2R2A,MED16,CYP11B2,SRSF7,SRRM1,SMCHD1,MED25,RORC,MDH2,ATP13A2,THNSL2,CSF1,TRAIP,SPSB1,SOCS3,CNTN2,FANCF,HGS,BCAN,WT1,KLHL22,EPHB3,RARB,FOXL2,UBA7,NR2C1,TTF1,TRMT11,COQ6,HAP1,CACNA1H,TCFL5,ZMIZ1,PPIL2,USP16,RAD51C,FIP1L1,AZIN1,CECR5,MRPL35,TRIO,NELFB,IDS,TPST2,SGK2,DMP1,WNK1,RNF13,OAS2,ADCY2,SERINC1,JAK1,PKN1,BRE,PRELP,ESR2,PSPC1,DHRS2,MGAT3,CA7,MTMR2,ZC3H7B,DUSP9,CRKL,FMOD,GPBP1L1,DPF1,UBQLN3,PRPF39,SLC25A46,TAT,ACSL5,PUS7,FDPS,PIK3R4,DCTD,GM2A,BCL11B,POT1,PAX5,NF1,WDR55,XRCC2,BABAM1,FGF17,RGR,TECPR2,TRRAP,PTPRF,MAK16,CDC16,NRP2,ETF1,FUT8,ADARB1,UBA3,ATP1A2,INPP5F,AKAP13,PJA2,MAP3K3,PJA1,MOK,PSMB5,AKR7A3,TFB2M,MTR,AGT,RAB4A,JMJD4,ADCK3,IARS2,RRP15,PFKFB2,TFB1M,ETNK2,PTGS2,IVNS1ABP,EPM2A,FMO4,UAP1,CTGF,NR1I3,UFC1,PEA15,RRNAD1,KIAA0907,MAN1A1,RPS27,RAB13,NPR1,CDC40,QRSL1,PNLIP,SCAF11,TCF7L2,RNGTT,BCAS2,CYB5R4,PDCD11,DNASE1L1,OPN1LW,IRAK1,EXTL2,TRMT13,SLC35A3,BTRC,PTBP2,GCLM,FAM178A,DR1,CPN1,FMR1,ENTPD7,HS2ST1,LMBRD1,PI4K2A,ENTPD1,ACOT11,RUNX2,RNF113A,NDOR1,ECHDC2,UBE2A,MAN1B1,MKNK1,RAD54L,CEL,TOE1,PLK3,MAT1A,SFTPD,ABL1,NUP188,ZMPSTE24,HNRNPH2,SF3A3,SGPL1,ENG,RNF19B,FABP3,PTAFR,PHF20,PRPF4,IL2RG,PINK1,CDA,ALDH4A1,ASXL1,MAP3K19,CTRC,TPP2,CCDC22,PTPRH,NPPB,PRUNE2,TRIM31,UGGT2,RBM3,EXOSC10,PIK3CD,STAM,TCOF1,CUBN,NMT2,TP73,CA9,NUP160,PANK4,SEPHS1,PRKD3,SLC23A2,PRDX4,RPS6KA3,IL2RA,RPP40,ECI2,ALOX15B,BPHL,PDE4A,NFIB,DUT,SDC1,HR,GCAT,NUPL1,TNK2,VLDLR,SOD3,MTMR12,FECH,SNRNP25,RNMT,EOGT,RNF216,TBP,GPS1,TAOK3,CERS6,GRK5,DPEP1,SPOP,LIPT1,CDKN2D,ST3GAL2,RENBP,HMMR,PTTG1,FBXO38,PPP2R2B,DNASE1L3,SLC28A1,CCL8,AKTIP,TGFB1I1,SLC11A2,QPRT,A1CF,DHRS7B,ADM2,ZC3H7A,CSNK1E,UBE2G1,MAP2K7,EPHB1,RDH16,GGT5,CAMK2A,USP34,UBE2D2,GIN1,MYO5A,TSSK2,PAICS,BACH1,PLA2G2A,ASXL2,CUL4B,MYH8,CYP4F11,FBXO11,ESRRA,APOBEC3G,KCTD17,MEX3C,OBSL1,SMS,MARK2,TF,SETD5,THADA,PSMD14,KDM3A,PLD3,ALDH7A1,ARTN,UGT2B11,CREB1,OAS1,RNF24,ACAD10,SLC25A17,TKT,PTPN6,STRAP,CDC7,KLHL24,MAN2B1,MECP2,KIAA0226L,CHAC1,TNIK,SATB1,TEN1-CDK3,MTO1,ZDHHC17,EBNA1BP2,RFC5,WSB2,FGFR2,MAP2K4,PTPRC,CSGALNACT1,RPP14,CACTIN,CBFB,INTS12,EIF2B1,DDX46,FBXO24,GALNT11,PLTP,FHIT,RPL37A,U2SURP,SEPHS2,ADAMTS9,SELT,PRKRIP1,CASR,SRSF10,NR6A1,ARMC8,TFAM,MFN1,HSD17B4,CSNK1A1,LSM6,DAPP1,CDK18,TUSC3,PRPS1L1,ABLIM3,INPP4B,TCEA1,GFRA2,UNC13A,STK3,AMPD1,INTS8,PLCD1,PTDSS1,PGBD5,TYK2,KDM2A,RBM4B,GRK6,CRYAB,CCS,MUC5B,DPF2,MYO18A,SFSWAP,LDHC,CUL7,CYP2E1,PCYT2,BCAT1,AUNIP,NUP153,GALNT6,PDGFRL,MYCBP2,CPSF3L,GTF2H3,ATP8B1,PAH,BRF1,CYP4F12,SPTB,AKT1,VIPAS39,ETFA,OBSCN,KCTD13,KLHL36,NUP88,TOM1L1,ENSP00000461324,CTDNEP1,TEFM,RBM8A,RNF43,SLC16A3,MAP4K1,POP4,C19orf40,LPPR2,ERC1,ACP5,LSM4,GMFG,SUGP2,DNAJC3,ALDH3B1,FKBP8,GAN,HIST1H2BM,SPCS1,YAP1,HIST1H4A,LRRC8E,EPHX1,NMRK2,SRSF8,MTERF4,OPLAH,CYP3A7,SOCS2,C18orf25,RSRC1,FMO1,CSDE1,RECQL4,PLCG2,PEX12,PCSK6,PPIP5K2,HIST1H2BE,GLYAT
## 21 CPA1,UBR7,XYLT2,RTFDC1,HDAC7,DERL2,KDM4B,BCL3,MKRN2,PTPN18,TBX21,MRPS34,MAP2K5,FAP,SLC22A4,CETP,SIRT4,PSMD5,MMP11,TTLL12,TXN2,GZMH,PIGH,EIF5,VRK1,PNN,BIRC7,DHODH,FA2H,TGFB1,ZNRF4,SLC5A5,HGF,UBE2D4,CPA2,FKBP14,NOD1,ST6GALNAC2,UTP18,CPD,KAT2A,WFS1,KRR1,CHPT1,SNX3,IL4,MSH2,PCGF1,ACADL,NEU2,ODC1,ORC2,SLC19A2,TTR,RNF103,PANK3,COIL,CAT,FTSJ2,ACTR5,ATP5E,PEPD,LIPE,BMP4,THOC2,IDUA,APOL5,KLK12,CMA1,ARHGEF6,MAPK8IP3,CUL9,PLVAP,HRC,SLC35D2,CAPN7,USP29,NR0B2,PER2,SCLY,RPA1,H3F3B,KDM6B,VPS4A,ALDH3B2,CHRM3,MACROD1,CCDC59,VRTN,FOLH1,HTRA2,HTR2B,NUPL2,DDX56,NKX2-8,MRPS18B,GTF2H4,MRPL15,CCBL2,ASNSD1,PPWD1,NUP133,MAN2A1,RNF138,TAOK1,BTBD1,TIPIN,ATP5B,PIK3C3,WIPI1,SMAD2,RHBDF1,TELO2,GINS1,SPTLC1,RPL8,HPN,MARK4,PIAS4,MAPK3,DDX18,P4HA1,LCN1,ACVR1,KAT2B,GTF3C3,HSF4,SLC5A7,MCM6,DARS,ARID4B,CHST10,CSTA,SLC2A9,RAB7A,GOLPH3,POLA2,USP4,MCCC1,EIF4H,HPX,FGF7,SPG7,COPS3,PCTP,NPC1,CBX4,ERBB2,SIK1,PSMA5,UBXN4,POLR2D,RPL37,SKP2,GFRA3,GGCT,KCTD7,PRDM14,NTRK2,HABP2,ENDOD1,RPS3,ARID5B,PRSS23,PTS,OXSM,NARS2,BICD1,RNF219,ZC3H13,NIPBL,MED21,RIOK2,HGD,GTF2E1,XPC,LONP2,AKR1B1,CSF1R,PEX10,ABHD3,HIST1H2BD,ARAF,NR2F6,FGFR4,PTCD1,DCUN1D1,NEU3,USP24,NKX6-1,ALB,SNRK,TDGF1,MFI2,MST1R,HMGB2,ICE1,GALNT10,LMTK2,FASTK,AP5Z1,WRN,FAM35A,TTLL5,AMN,COPS2,TRIM44,HSP90B1,KIAA0101,METTL21B,TRIM68,MVD,AXL,TSR1,PELP1,KLK1,SLC22A11,MGMT,TRIM8,PRL,CCL11,BUB1,RNASE2,CTRB2,COPS6,POP7,B3GNT2,MRPL39,RBFA,SYNPO2,SPRR1B,MRPL13,OGG1,ISG20,NEUROD2,GLB1,EIF2AK3,TUT1,MRPL48,CLOCK,MARCH3,TERT,NR1D2,RASGRP1,KRT2,PPARD,CASP3,ACOT1,KLK10,MSL2,PLA2G1B,PRKDC,PHKB,KLK2,CTC1,USP20,GORASP1,PER1,METTL1,CRAT,CSTF3,SFTPC,CLK4,CYC1,ADRBK2,WDTC1,DUOX1,FUT7,MPI,SUMO4,CETN1,GCSH,NPEPPS,PLA2G16,ASB8,KRI1,CNOT1,TNIP2,CDC25C,GEMIN4,ISG20L2,TRIM25,AATK,PPP2R2A,MED16,SRSF7,SRRM1,SMCHD1,MED25,RORC,MDH2,ATP13A2,THNSL2,CSF1,TRAIP,SPSB1,SOCS3,FANCF,HGS,BCAN,WT1,KLHL22,EPHB3,RARB,FOXL2,UBA7,NR2C1,TTF1,TRMT11,TCFL5,C2CD3,ZMIZ1,PPIL2,USP16,RAD51C,FIP1L1,AZIN1,MMP25,CELA3B,MRPL35,TASP1,TRIO,NELFB,IDS,TPST2,SGK2,DMP1,WNK1,RNF13,OAS2,ADCY2,SERINC1,JAK1,PKN1,BRE,PRELP,ESR2,PSPC1,APOL3,MGAT3,MTMR2,ZC3H7B,DUSP9,CRKL,FMOD,GPBP1L1,THSD4,DPF1,UBQLN3,PRPF39,TAT,ACSL5,PUS7,PIK3R4,DCTD,GM2A,BCL11B,POT1,PAX5,NF1,WDR55,XRCC2,BABAM1,FGF17,RGR,CELA2A,TRRAP,PTPRF,MAK16,F8,CDC16,NRP2,ETF1,MMP17,FUT8,ADARB1,UBA3,AKAP13,PJA2,MAP3K3,PJA1,MOK,PSMB5,TFB2M,MTR,AGT,JMJD4,ADCK3,IARS2,RRP15,PFKFB2,TFB1M,CHIT1,PTGS2,IVNS1ABP,EPM2A,UAP1,CTGF,NR1I3,UFC1,NIT1,PEA15,RRNAD1,KIAA0907,MAN1A1,RPS27,RAB13,NPR1,CUZD1,CDC40,HTRA1,SEC63,QRSL1,PREP,SCAF11,TCF7L2,RNGTT,BCAS2,PDCD11,DNASE1L1,OPN1LW,IRAK1,EXTL2,TRMT13,SLC35A3,BTRC,PTBP2,GCLM,FAM178A,DR1,CPN1,FMR1,ENTPD7,HS2ST1,HPSE2,LMBRD1,ENTPD1,ACOT11,RUNX2,RNF113A,UBE2A,MAN1B1,MKNK1,RAD54L,CEL,TOE1,PLK3,MAT1A,SFTPD,ABL1,NUP188,ZMPSTE24,HNRNPH2,SF3A3,SGPL1,ENG,RNF19B,PHF20,PRPF4,IL2RG,PINK1,CDA,ALDH4A1,F7,ASXL1,MAP3K19,CELA2B,CTRC,TPP2,CCDC22,PTPRH,NPPB,TRIM31,UGGT2,RBM3,EXOSC10,PIK3CD,STAM,TCOF1,CUBN,NMT2,TP73,NUP160,PANK4,SEPHS1,PRKD3,SLC23A2,PRDX4,RPS6KA3,HGSNAT,IL2RA,RPP40,BPHL,PDE4A,DUT,SDC1,HR,GCAT,NUPL1,TNK2,VLDLR,FECH,SNRNP25,RNMT,EOGT,RNF216,KLK14,KLK7,TBP,GPS1,TAOK3,CERS6,GRK5,DPEP1,SPOP,PRCP,LIPT1,CDKN2D,ST3GAL2,RENBP,HMMR,PTTG1,FBXO38,PPP2R2B,DNASE1L3,SLC28A1,CCL8,AKTIP,TGFB1I1,SLC11A2,QPRT,A1CF,ADM2,ZC3H7A,CSNK1E,UBE2G1,MAP2K7,EPHB1,GGT5,CAMK2A,USP34,UBE2D2,CAPN11,GIN1,TSSK2,PAICS,BACH1,PLA2G2A,ASXL2,CUL4B,MYH8,FBXO11,ESRRA,APOBEC3G,KCTD17,MEX3C,OBSL1,SMS,MARK2,TF,SETD5,THADA,PSMD14,KDM3A,PLD3,ALDH7A1,ARTN,CREB1,OAS1,RNF24,PTPN6,STRAP,CDC7,KLHL24,MAN2B1,MECP2,CHAC1,TNIK,SATB1,TEN1-CDK3,MTO1,ZDHHC17,EBNA1BP2,RFC5,WSB2,FGFR2,MAP2K4,PTPRC,CSGALNACT1,RPP14,CACTIN,CBFB,INTS12,EIF2B1,DDX46,FBXO24,GALNT11,CPB1,FHIT,RPL37A,U2SURP,SEPHS2,ADAMTS9,SELT,PRKRIP1,ADAM9,CASR,SRSF10,NR6A1,ARMC8,TFAM,MFN1,HSD17B4,CSNK1A1,HGFAC,LSM6,DAPP1,CDK18,TUSC3,PRPS1L1,ABLIM3,TCEA1,GFRA2,UNC13A,STK3,AMPD1,INTS8,PTDSS1,PGBD5,TYK2,KDM2A,RBM4B,GRK6,CRYAB,CCS,MUC5B,DPF2,MYO18A,SFSWAP,LDHC,CUL7,CYP2E1,DAG1,BCAT1,AUNIP,NUP153,GALNT6,PDGFRL,MYCBP2,CPSF3L,GTF2H3,PAH,BRF1,SPTB,AKT1,VIPAS39,OBSCN,KCTD13,KLHL36,NUP88,TOM1L1,CTDNEP1,TEFM,RBM8A,RNF43,MAP4K1,POP4,C19orf40,ERC1,ACP5,KLK15,LSM4,KLK13,GMFG,SUGP2,KLK11,DNAJC3,ALDH3B1,FKBP8,GAN,HIST1H2BM,SPPL2B,SPCS1,YAP1,HIST1H4A,LRRC8E,NMRK2,SRSF8,MTERF4,OPLAH,SOCS2,C18orf25,RSRC1,CSDE1,RECQL4,PEX12,PCSK6,HIST1H2BE,GLYAT
## p_value fdr description
## 16 4.40e-23 5.65e-19 Cellular process
## 17 1.33e-14 8.53e-11 Organic substance metabolic process
## 18 2.24e-14 9.61e-11 Metabolic process
## 19 1.13e-12 3.62e-09 Primary metabolic process
## 20 5.38e-12 1.38e-08 Cellular metabolic process
## 21 4.20e-10 8.99e-07 Nitrogen compound metabolic process
write.csv(enrichment_results_GO, "enrichment_results_GO_module3.csv", row.names = FALSE)