Visium HD mouse brain AVM dataset

Collaborative Work Between Qiu and McGee lab, UA COM-Phoenix
AVM samples from Oh lab

This is a web summary for key metrics of sequencing.

Tissues arrayed on A1 chip - dissected mouse Visual cortex

Tissues arrayed on D1 chip - AVM samples and spinal cord injury sections

AVM Figure, note cluster 1 and cluster 7: cluster 7 surrounds vessels but does not cover cell nucleus

Spatial location of selected gene expressions

Visium_HD_figure

Cell segmentation and clustering using 2 micron bins

Cell segmentation using 2 micron bins - Zoom view