Diseño factorial (DF)
Ana Maria Torres
2025-04-20
R Markdown
Problema a analizar: Actividad antimicrobiana sobre las bacterias Streptococcus pyogenes, Staphylococcus aureus, Proteus mirabilis y Bacillus cereus.
Including Plots
Cálculo de ANOVA y el Modelo Lineal
## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 2.1862 0.7287 24.184 2.31e-08 ***
## FactorB 3 0.0399 0.0133 0.441 0.725
## FactorA:FactorB 9 0.1414 0.0157 0.521 0.848
## Residuals 32 0.9643 0.0301
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 2.1862 0.7287 24.184 2.31e-08 ***
## FactorB 3 0.0399 0.0133 0.441 0.725
## FactorA:FactorB 9 0.1414 0.0157 0.521 0.848
## Residuals 32 0.9643 0.0301
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Call:
## lm(formula = CMI ~ (FactorA + FactorB + FactorA:FactorB))
##
## Residuals:
## Min 1Q Median 3Q Max
## -0.44667 -0.07833 0.00667 0.09750 0.38333
##
## Coefficients:
## Estimate Std. Error t value
## (Intercept) 1.283333 0.100222 12.805
## FactorAMalta -0.430000 0.141735 -3.034
## FactorAPDB -0.423333 0.141735 -2.987
## FactorASabouraud -0.620000 0.141735 -4.374
## FactorBProteus mirabilis -0.010000 0.141735 -0.071
## FactorBStaphylococcus aureus -0.190000 0.141735 -1.341
## FactorBStreptococcus pyogenes -0.116667 0.141735 -0.823
## FactorAMalta:FactorBProteus mirabilis 0.003333 0.200444 0.017
## FactorAPDB:FactorBProteus mirabilis 0.170000 0.200444 0.848
## FactorASabouraud:FactorBProteus mirabilis -0.096667 0.200444 -0.482
## FactorAMalta:FactorBStaphylococcus aureus 0.083333 0.200444 0.416
## FactorAPDB:FactorBStaphylococcus aureus 0.256667 0.200444 1.280
## FactorASabouraud:FactorBStaphylococcus aureus 0.160000 0.200444 0.798
## FactorAMalta:FactorBStreptococcus pyogenes 0.040000 0.200444 0.200
## FactorAPDB:FactorBStreptococcus pyogenes 0.296667 0.200444 1.480
## FactorASabouraud:FactorBStreptococcus pyogenes 0.090000 0.200444 0.449
## Pr(>|t|)
## (Intercept) 3.89e-14 ***
## FactorAMalta 0.004764 **
## FactorAPDB 0.005373 **
## FactorASabouraud 0.000121 ***
## FactorBProteus mirabilis 0.944192
## FactorBStaphylococcus aureus 0.189514
## FactorBStreptococcus pyogenes 0.416526
## FactorAMalta:FactorBProteus mirabilis 0.986835
## FactorAPDB:FactorBProteus mirabilis 0.402672
## FactorASabouraud:FactorBProteus mirabilis 0.632902
## FactorAMalta:FactorBStaphylococcus aureus 0.680372
## FactorAPDB:FactorBStaphylococcus aureus 0.209577
## FactorASabouraud:FactorBStaphylococcus aureus 0.430622
## FactorAMalta:FactorBStreptococcus pyogenes 0.843090
## FactorAPDB:FactorBStreptococcus pyogenes 0.148639
## FactorASabouraud:FactorBStreptococcus pyogenes 0.656455
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 0.1736 on 32 degrees of freedom
## Multiple R-squared: 0.7106, Adjusted R-squared: 0.5749
## F-statistic: 5.238 on 15 and 32 DF, p-value: 4.238e-05sIGNIFICADO DE LA INTERACCIÓN: interacción entre ambos factores representan el hecho de que el efecto de un determinado nivel de un factor sea diferente para cada nivel del otro factor.
Gráficas de efectos principales e interacciones
## Warning: package 'car' was built under R version 4.4.2## Cargando paquete requerido: carData## Warning: package 'carData' was built under R version 4.4.2## Warning: package 'phia' was built under R version 4.4.3
Supuestos del Diseño Experimental
- Normalidad
##
## Shapiro-Wilk normality test
##
## data: rstandard(Modelo)
## W = 0.96222, p-value = 0.1242- Prueba de homocedasticidad o igualdad de varianzas
## Non-constant Variance Score Test
## Variance formula: ~ fitted.values
## Chisquare = 1.061753, Df = 1, p = 0.30282- Revisión grafica de supuestos
- cálculo del efecto (ANOVA)
## Warning: package 'lsr' was built under R version 4.4.3## eta.sq eta.sq.part
## FactorA 0.65616912 0.69393117
## FactorB 0.01197739 0.03974042
## FactorA:FactorB 0.04244017 0.12788829Pruebas aposteriori(Comparaciones multiples de medias)
library(agricolae)## Warning: package 'agricolae' was built under R version 4.4.2TukeyHSD(ANOVA)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = Modelo)
##
## $FactorA
## diff lwr upr p adj
## Malta-Czapeck -0.3983333 -0.59033940 -0.206327269 0.0000187
## PDB-Czapeck -0.2425000 -0.43450606 -0.050493936 0.0088631
## Sabouraud-Czapeck -0.5816667 -0.77367273 -0.389660603 0.0000000
## PDB-Malta 0.1558333 -0.03617273 0.347839397 0.1452483
## Sabouraud-Malta -0.1833333 -0.37533940 0.008672731 0.0655692
## Sabouraud-PDB -0.3391667 -0.53117273 -0.147160603 0.0002078
##
## $FactorB
## diff lwr upr
## Proteus mirabilis-Bacillus cereus 0.009166667 -0.1828394 0.2011727
## Staphylococcus aureus-Bacillus cereus -0.065000000 -0.2570061 0.1270061
## Streptococcus pyogenes-Bacillus cereus -0.010000000 -0.2020061 0.1820061
## Staphylococcus aureus-Proteus mirabilis -0.074166667 -0.2661727 0.1178394
## Streptococcus pyogenes-Proteus mirabilis -0.019166667 -0.2111727 0.1728394
## Streptococcus pyogenes-Staphylococcus aureus 0.055000000 -0.1370061 0.2470061
## p adj
## Proteus mirabilis-Bacillus cereus 0.9992101
## Staphylococcus aureus-Bacillus cereus 0.7958591
## Streptococcus pyogenes-Bacillus cereus 0.9989758
## Staphylococcus aureus-Proteus mirabilis 0.7236926
## Streptococcus pyogenes-Proteus mirabilis 0.9929434
## Streptococcus pyogenes-Staphylococcus aureus 0.8646654
##
## $`FactorA:FactorB`
## diff
## Malta:Bacillus cereus-Czapeck:Bacillus cereus -0.430000000
## PDB:Bacillus cereus-Czapeck:Bacillus cereus -0.423333333
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -0.620000000
## Czapeck:Proteus mirabilis-Czapeck:Bacillus cereus -0.010000000
## Malta:Proteus mirabilis-Czapeck:Bacillus cereus -0.436666667
## PDB:Proteus mirabilis-Czapeck:Bacillus cereus -0.263333333
## Sabouraud:Proteus mirabilis-Czapeck:Bacillus cereus -0.726666667
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus -0.190000000
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus -0.536666667
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus -0.356666667
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus -0.650000000
## Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.116666667
## Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.506666667
## PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.243333333
## Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.646666667
## PDB:Bacillus cereus-Malta:Bacillus cereus 0.006666667
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus -0.190000000
## Czapeck:Proteus mirabilis-Malta:Bacillus cereus 0.420000000
## Malta:Proteus mirabilis-Malta:Bacillus cereus -0.006666667
## PDB:Proteus mirabilis-Malta:Bacillus cereus 0.166666667
## Sabouraud:Proteus mirabilis-Malta:Bacillus cereus -0.296666667
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus 0.240000000
## Malta:Staphylococcus aureus-Malta:Bacillus cereus -0.106666667
## PDB:Staphylococcus aureus-Malta:Bacillus cereus 0.073333333
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus -0.220000000
## Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus 0.313333333
## Malta:Streptococcus pyogenes-Malta:Bacillus cereus -0.076666667
## PDB:Streptococcus pyogenes-Malta:Bacillus cereus 0.186666667
## Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus -0.216666667
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus -0.196666667
## Czapeck:Proteus mirabilis-PDB:Bacillus cereus 0.413333333
## Malta:Proteus mirabilis-PDB:Bacillus cereus -0.013333333
## PDB:Proteus mirabilis-PDB:Bacillus cereus 0.160000000
## Sabouraud:Proteus mirabilis-PDB:Bacillus cereus -0.303333333
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus 0.233333333
## Malta:Staphylococcus aureus-PDB:Bacillus cereus -0.113333333
## PDB:Staphylococcus aureus-PDB:Bacillus cereus 0.066666667
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus -0.226666667
## Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus 0.306666667
## Malta:Streptococcus pyogenes-PDB:Bacillus cereus -0.083333333
## PDB:Streptococcus pyogenes-PDB:Bacillus cereus 0.180000000
## Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus -0.223333333
## Czapeck:Proteus mirabilis-Sabouraud:Bacillus cereus 0.610000000
## Malta:Proteus mirabilis-Sabouraud:Bacillus cereus 0.183333333
## PDB:Proteus mirabilis-Sabouraud:Bacillus cereus 0.356666667
## Sabouraud:Proteus mirabilis-Sabouraud:Bacillus cereus -0.106666667
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.430000000
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.083333333
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.263333333
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.030000000
## Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.503333333
## Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.113333333
## PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.376666667
## Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.026666667
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.426666667
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis -0.253333333
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -0.716666667
## Czapeck:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.180000000
## Malta:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.526666667
## PDB:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.346666667
## Sabouraud:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.640000000
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.106666667
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.496666667
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.233333333
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.636666667
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.173333333
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis -0.290000000
## Czapeck:Staphylococcus aureus-Malta:Proteus mirabilis 0.246666667
## Malta:Staphylococcus aureus-Malta:Proteus mirabilis -0.100000000
## PDB:Staphylococcus aureus-Malta:Proteus mirabilis 0.080000000
## Sabouraud:Staphylococcus aureus-Malta:Proteus mirabilis -0.213333333
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis 0.320000000
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis -0.070000000
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis 0.193333333
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis -0.210000000
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.463333333
## Czapeck:Staphylococcus aureus-PDB:Proteus mirabilis 0.073333333
## Malta:Staphylococcus aureus-PDB:Proteus mirabilis -0.273333333
## PDB:Staphylococcus aureus-PDB:Proteus mirabilis -0.093333333
## Sabouraud:Staphylococcus aureus-PDB:Proteus mirabilis -0.386666667
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis 0.146666667
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis -0.243333333
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis 0.020000000
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis -0.383333333
## Czapeck:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.536666667
## Malta:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.190000000
## PDB:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.370000000
## Sabouraud:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.076666667
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.610000000
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.220000000
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.483333333
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.080000000
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.346666667
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.166666667
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.460000000
## Czapeck:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.073333333
## Malta:Streptococcus pyogenes-Czapeck:Staphylococcus aureus -0.316666667
## PDB:Streptococcus pyogenes-Czapeck:Staphylococcus aureus -0.053333333
## Sabouraud:Streptococcus pyogenes-Czapeck:Staphylococcus aureus -0.456666667
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus 0.180000000
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus -0.113333333
## Czapeck:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.420000000
## Malta:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.030000000
## PDB:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.293333333
## Sabouraud:Streptococcus pyogenes-Malta:Staphylococcus aureus -0.110000000
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus -0.293333333
## Czapeck:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.240000000
## Malta:Streptococcus pyogenes-PDB:Staphylococcus aureus -0.150000000
## PDB:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.113333333
## Sabouraud:Streptococcus pyogenes-PDB:Staphylococcus aureus -0.290000000
## Czapeck:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.533333333
## Malta:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.143333333
## PDB:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.406666667
## Sabouraud:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.003333333
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.390000000
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.126666667
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.530000000
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.263333333
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.140000000
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes -0.403333333
## lwr
## Malta:Bacillus cereus-Czapeck:Bacillus cereus -0.955566466
## PDB:Bacillus cereus-Czapeck:Bacillus cereus -0.948899800
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -1.145566466
## Czapeck:Proteus mirabilis-Czapeck:Bacillus cereus -0.535566466
## Malta:Proteus mirabilis-Czapeck:Bacillus cereus -0.962233133
## PDB:Proteus mirabilis-Czapeck:Bacillus cereus -0.788899800
## Sabouraud:Proteus mirabilis-Czapeck:Bacillus cereus -1.252233133
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus -0.715566466
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus -1.062233133
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus -0.882233133
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus -1.175566466
## Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.642233133
## Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus -1.032233133
## PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.768899800
## Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus -1.172233133
## PDB:Bacillus cereus-Malta:Bacillus cereus -0.518899800
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus -0.715566466
## Czapeck:Proteus mirabilis-Malta:Bacillus cereus -0.105566466
## Malta:Proteus mirabilis-Malta:Bacillus cereus -0.532233133
## PDB:Proteus mirabilis-Malta:Bacillus cereus -0.358899800
## Sabouraud:Proteus mirabilis-Malta:Bacillus cereus -0.822233133
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus -0.285566466
## Malta:Staphylococcus aureus-Malta:Bacillus cereus -0.632233133
## PDB:Staphylococcus aureus-Malta:Bacillus cereus -0.452233133
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus -0.745566466
## Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus -0.212233133
## Malta:Streptococcus pyogenes-Malta:Bacillus cereus -0.602233133
## PDB:Streptococcus pyogenes-Malta:Bacillus cereus -0.338899800
## Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus -0.742233133
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus -0.722233133
## Czapeck:Proteus mirabilis-PDB:Bacillus cereus -0.112233133
## Malta:Proteus mirabilis-PDB:Bacillus cereus -0.538899800
## PDB:Proteus mirabilis-PDB:Bacillus cereus -0.365566466
## Sabouraud:Proteus mirabilis-PDB:Bacillus cereus -0.828899800
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus -0.292233133
## Malta:Staphylococcus aureus-PDB:Bacillus cereus -0.638899800
## PDB:Staphylococcus aureus-PDB:Bacillus cereus -0.458899800
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus -0.752233133
## Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus -0.218899800
## Malta:Streptococcus pyogenes-PDB:Bacillus cereus -0.608899800
## PDB:Streptococcus pyogenes-PDB:Bacillus cereus -0.345566466
## Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus -0.748899800
## Czapeck:Proteus mirabilis-Sabouraud:Bacillus cereus 0.084433534
## Malta:Proteus mirabilis-Sabouraud:Bacillus cereus -0.342233133
## PDB:Proteus mirabilis-Sabouraud:Bacillus cereus -0.168899800
## Sabouraud:Proteus mirabilis-Sabouraud:Bacillus cereus -0.632233133
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.095566466
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.442233133
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.262233133
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.555566466
## Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.022233133
## Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.412233133
## PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.148899800
## Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.552233133
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.952233133
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis -0.778899800
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -1.242233133
## Czapeck:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.705566466
## Malta:Staphylococcus aureus-Czapeck:Proteus mirabilis -1.052233133
## PDB:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.872233133
## Sabouraud:Staphylococcus aureus-Czapeck:Proteus mirabilis -1.165566466
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.632233133
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis -1.022233133
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.758899800
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis -1.162233133
## PDB:Proteus mirabilis-Malta:Proteus mirabilis -0.352233133
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis -0.815566466
## Czapeck:Staphylococcus aureus-Malta:Proteus mirabilis -0.278899800
## Malta:Staphylococcus aureus-Malta:Proteus mirabilis -0.625566466
## PDB:Staphylococcus aureus-Malta:Proteus mirabilis -0.445566466
## Sabouraud:Staphylococcus aureus-Malta:Proteus mirabilis -0.738899800
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis -0.205566466
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis -0.595566466
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis -0.332233133
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis -0.735566466
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.988899800
## Czapeck:Staphylococcus aureus-PDB:Proteus mirabilis -0.452233133
## Malta:Staphylococcus aureus-PDB:Proteus mirabilis -0.798899800
## PDB:Staphylococcus aureus-PDB:Proteus mirabilis -0.618899800
## Sabouraud:Staphylococcus aureus-PDB:Proteus mirabilis -0.912233133
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis -0.378899800
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis -0.768899800
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis -0.505566466
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis -0.908899800
## Czapeck:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.011100200
## Malta:Staphylococcus aureus-Sabouraud:Proteus mirabilis -0.335566466
## PDB:Staphylococcus aureus-Sabouraud:Proteus mirabilis -0.155566466
## Sabouraud:Staphylococcus aureus-Sabouraud:Proteus mirabilis -0.448899800
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.084433534
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis -0.305566466
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis -0.042233133
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis -0.445566466
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.872233133
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.692233133
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.985566466
## Czapeck:Streptococcus pyogenes-Czapeck:Staphylococcus aureus -0.452233133
## Malta:Streptococcus pyogenes-Czapeck:Staphylococcus aureus -0.842233133
## PDB:Streptococcus pyogenes-Czapeck:Staphylococcus aureus -0.578899800
## Sabouraud:Streptococcus pyogenes-Czapeck:Staphylococcus aureus -0.982233133
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus -0.345566466
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus -0.638899800
## Czapeck:Streptococcus pyogenes-Malta:Staphylococcus aureus -0.105566466
## Malta:Streptococcus pyogenes-Malta:Staphylococcus aureus -0.495566466
## PDB:Streptococcus pyogenes-Malta:Staphylococcus aureus -0.232233133
## Sabouraud:Streptococcus pyogenes-Malta:Staphylococcus aureus -0.635566466
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus -0.818899800
## Czapeck:Streptococcus pyogenes-PDB:Staphylococcus aureus -0.285566466
## Malta:Streptococcus pyogenes-PDB:Staphylococcus aureus -0.675566466
## PDB:Streptococcus pyogenes-PDB:Staphylococcus aureus -0.412233133
## Sabouraud:Streptococcus pyogenes-PDB:Staphylococcus aureus -0.815566466
## Czapeck:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.007766867
## Malta:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus -0.382233133
## PDB:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus -0.118899800
## Sabouraud:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus -0.522233133
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.915566466
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.652233133
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -1.055566466
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.262233133
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.665566466
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes -0.928899800
## upr
## Malta:Bacillus cereus-Czapeck:Bacillus cereus 0.095566466
## PDB:Bacillus cereus-Czapeck:Bacillus cereus 0.102233133
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -0.094433534
## Czapeck:Proteus mirabilis-Czapeck:Bacillus cereus 0.515566466
## Malta:Proteus mirabilis-Czapeck:Bacillus cereus 0.088899800
## PDB:Proteus mirabilis-Czapeck:Bacillus cereus 0.262233133
## Sabouraud:Proteus mirabilis-Czapeck:Bacillus cereus -0.201100200
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus 0.335566466
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus -0.011100200
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus 0.168899800
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus -0.124433534
## Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.408899800
## Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.018899800
## PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.282233133
## Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.121100200
## PDB:Bacillus cereus-Malta:Bacillus cereus 0.532233133
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus 0.335566466
## Czapeck:Proteus mirabilis-Malta:Bacillus cereus 0.945566466
## Malta:Proteus mirabilis-Malta:Bacillus cereus 0.518899800
## PDB:Proteus mirabilis-Malta:Bacillus cereus 0.692233133
## Sabouraud:Proteus mirabilis-Malta:Bacillus cereus 0.228899800
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus 0.765566466
## Malta:Staphylococcus aureus-Malta:Bacillus cereus 0.418899800
## PDB:Staphylococcus aureus-Malta:Bacillus cereus 0.598899800
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus 0.305566466
## Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus 0.838899800
## Malta:Streptococcus pyogenes-Malta:Bacillus cereus 0.448899800
## PDB:Streptococcus pyogenes-Malta:Bacillus cereus 0.712233133
## Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus 0.308899800
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus 0.328899800
## Czapeck:Proteus mirabilis-PDB:Bacillus cereus 0.938899800
## Malta:Proteus mirabilis-PDB:Bacillus cereus 0.512233133
## PDB:Proteus mirabilis-PDB:Bacillus cereus 0.685566466
## Sabouraud:Proteus mirabilis-PDB:Bacillus cereus 0.222233133
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus 0.758899800
## Malta:Staphylococcus aureus-PDB:Bacillus cereus 0.412233133
## PDB:Staphylococcus aureus-PDB:Bacillus cereus 0.592233133
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus 0.298899800
## Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus 0.832233133
## Malta:Streptococcus pyogenes-PDB:Bacillus cereus 0.442233133
## PDB:Streptococcus pyogenes-PDB:Bacillus cereus 0.705566466
## Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus 0.302233133
## Czapeck:Proteus mirabilis-Sabouraud:Bacillus cereus 1.135566466
## Malta:Proteus mirabilis-Sabouraud:Bacillus cereus 0.708899800
## PDB:Proteus mirabilis-Sabouraud:Bacillus cereus 0.882233133
## Sabouraud:Proteus mirabilis-Sabouraud:Bacillus cereus 0.418899800
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.955566466
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.608899800
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.788899800
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.495566466
## Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus 1.028899800
## Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.638899800
## PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.902233133
## Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.498899800
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis 0.098899800
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis 0.272233133
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -0.191100200
## Czapeck:Staphylococcus aureus-Czapeck:Proteus mirabilis 0.345566466
## Malta:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.001100200
## PDB:Staphylococcus aureus-Czapeck:Proteus mirabilis 0.178899800
## Sabouraud:Staphylococcus aureus-Czapeck:Proteus mirabilis -0.114433534
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.418899800
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.028899800
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.292233133
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.111100200
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.698899800
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis 0.235566466
## Czapeck:Staphylococcus aureus-Malta:Proteus mirabilis 0.772233133
## Malta:Staphylococcus aureus-Malta:Proteus mirabilis 0.425566466
## PDB:Staphylococcus aureus-Malta:Proteus mirabilis 0.605566466
## Sabouraud:Staphylococcus aureus-Malta:Proteus mirabilis 0.312233133
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis 0.845566466
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis 0.455566466
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis 0.718899800
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis 0.315566466
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis 0.062233133
## Czapeck:Staphylococcus aureus-PDB:Proteus mirabilis 0.598899800
## Malta:Staphylococcus aureus-PDB:Proteus mirabilis 0.252233133
## PDB:Staphylococcus aureus-PDB:Proteus mirabilis 0.432233133
## Sabouraud:Staphylococcus aureus-PDB:Proteus mirabilis 0.138899800
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis 0.672233133
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis 0.282233133
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis 0.545566466
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis 0.142233133
## Czapeck:Staphylococcus aureus-Sabouraud:Proteus mirabilis 1.062233133
## Malta:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.715566466
## PDB:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.895566466
## Sabouraud:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.602233133
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 1.135566466
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.745566466
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 1.008899800
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.605566466
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.178899800
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.358899800
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.065566466
## Czapeck:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.598899800
## Malta:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.208899800
## PDB:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.472233133
## Sabouraud:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.068899800
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus 0.705566466
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus 0.412233133
## Czapeck:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.945566466
## Malta:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.555566466
## PDB:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.818899800
## Sabouraud:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.415566466
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus 0.232233133
## Czapeck:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.765566466
## Malta:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.375566466
## PDB:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.638899800
## Sabouraud:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.235566466
## Czapeck:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 1.058899800
## Malta:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.668899800
## PDB:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.932233133
## Sabouraud:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.528899800
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.135566466
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.398899800
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.004433534
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.788899800
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.385566466
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes 0.122233133
## p adj
## Malta:Bacillus cereus-Czapeck:Bacillus cereus 0.2106700
## PDB:Bacillus cereus-Czapeck:Bacillus cereus 0.2298330
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus 0.0094446
## Czapeck:Proteus mirabilis-Czapeck:Bacillus cereus 1.0000000
## Malta:Proteus mirabilis-Czapeck:Bacillus cereus 0.1927183
## PDB:Proteus mirabilis-Czapeck:Bacillus cereus 0.8758554
## Sabouraud:Proteus mirabilis-Czapeck:Bacillus cereus 0.0012305
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus 0.9906263
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus 0.0415200
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus 0.4846348
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus 0.0053880
## Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.9999588
## Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.0680839
## PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.9268963
## Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.0057379
## PDB:Bacillus cereus-Malta:Bacillus cereus 1.0000000
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus 0.9906263
## Czapeck:Proteus mirabilis-Malta:Bacillus cereus 0.2398735
## Malta:Proteus mirabilis-Malta:Bacillus cereus 1.0000000
## PDB:Proteus mirabilis-Malta:Bacillus cereus 0.9974533
## Sabouraud:Proteus mirabilis-Malta:Bacillus cereus 0.7561804
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus 0.9337894
## Malta:Staphylococcus aureus-Malta:Bacillus cereus 0.9999868
## PDB:Staphylococcus aureus-Malta:Bacillus cereus 0.9999999
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus 0.9660628
## Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus 0.6840969
## Malta:Streptococcus pyogenes-Malta:Bacillus cereus 0.9999998
## PDB:Streptococcus pyogenes-Malta:Bacillus cereus 0.9920762
## Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus 0.9700456
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus 0.9870936
## Czapeck:Proteus mirabilis-PDB:Bacillus cereus 0.2608758
## Malta:Proteus mirabilis-PDB:Bacillus cereus 1.0000000
## PDB:Proteus mirabilis-PDB:Bacillus cereus 0.9983473
## Sabouraud:Proteus mirabilis-PDB:Bacillus cereus 0.7280651
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus 0.9462348
## Malta:Staphylococcus aureus-PDB:Bacillus cereus 0.9999714
## PDB:Staphylococcus aureus-PDB:Bacillus cereus 1.0000000
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus 0.9569586
## Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus 0.7136234
## Malta:Streptococcus pyogenes-PDB:Bacillus cereus 0.9999995
## PDB:Streptococcus pyogenes-PDB:Bacillus cereus 0.9944347
## Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus 0.9617059
## Czapeck:Proteus mirabilis-Sabouraud:Bacillus cereus 0.0113562
## Malta:Proteus mirabilis-Sabouraud:Bacillus cereus 0.9933398
## PDB:Proteus mirabilis-Sabouraud:Bacillus cereus 0.4846348
## Sabouraud:Proteus mirabilis-Sabouraud:Bacillus cereus 0.9999868
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.2106700
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.9999995
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.8758554
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus 1.0000000
## Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.0718164
## Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.9999714
## PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.3974920
## Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus 1.0000000
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis 0.2200990
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis 0.9034606
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis 0.0014958
## Czapeck:Staphylococcus aureus-Czapeck:Proteus mirabilis 0.9944347
## Malta:Staphylococcus aureus-Czapeck:Proteus mirabilis 0.0490945
## PDB:Staphylococcus aureus-Czapeck:Proteus mirabilis 0.5303293
## Sabouraud:Staphylococcus aureus-Czapeck:Proteus mirabilis 0.0065048
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.9999868
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.0798247
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.9462348
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.0069245
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.9961855
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis 0.7831137
## Czapeck:Staphylococcus aureus-Malta:Proteus mirabilis 0.9195466
## Malta:Staphylococcus aureus-Malta:Proteus mirabilis 0.9999943
## PDB:Staphylococcus aureus-Malta:Proteus mirabilis 0.9999997
## Sabouraud:Staphylococcus aureus-Malta:Proteus mirabilis 0.9736713
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis 0.6538849
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis 1.0000000
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis 0.9889717
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis 0.9769580
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis 0.1324523
## Czapeck:Staphylococcus aureus-PDB:Proteus mirabilis 0.9999999
## Malta:Staphylococcus aureus-PDB:Proteus mirabilis 0.8441775
## PDB:Staphylococcus aureus-PDB:Proteus mirabilis 0.9999977
## Sabouraud:Staphylococcus aureus-PDB:Proteus mirabilis 0.3568966
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis 0.9993668
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis 0.9268963
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis 1.0000000
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis 0.3701742
## Czapeck:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.0415200
## Malta:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.9906263
## PDB:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.4257499
## Sabouraud:Staphylococcus aureus-Sabouraud:Proteus mirabilis 0.9999998
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.0113562
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.9660628
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.0981991
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.9999997
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.5303293
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.9974533
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.1390255
## Czapeck:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.9999999
## Malta:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.6690636
## PDB:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 1.0000000
## Sabouraud:Streptococcus pyogenes-Czapeck:Staphylococcus aureus 0.1458622
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus 0.9944347
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus 0.9999714
## Czapeck:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.2398735
## Malta:Streptococcus pyogenes-Malta:Staphylococcus aureus 1.0000000
## PDB:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.7698061
## Sabouraud:Streptococcus pyogenes-Malta:Staphylococcus aureus 0.9999804
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus 0.7698061
## Czapeck:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.9337894
## Malta:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.9991849
## PDB:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.9999714
## Sabouraud:Streptococcus pyogenes-PDB:Staphylococcus aureus 0.7831137
## Czapeck:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.0439178
## Malta:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.9995125
## PDB:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 0.2831029
## Sabouraud:Streptococcus pyogenes-Sabouraud:Staphylococcus aureus 1.0000000
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.3438863
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.9998866
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.0464408
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.8758554
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.9996282
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes 0.2946712plot(TukeyHSD(ANOVA))
#Prueba de Tukey
outHSD<-HSD.test(ANOVA, "FactorA",console=TRUE)##
## Study: ANOVA ~ "FactorA"
##
## HSD Test for CMI
##
## Mean Square Error: 0.03013333
##
## FactorA, means
##
## CMI std r se Min Max Q25 Q50 Q75
## Czapeck 1.2041667 0.15547337 12 0.05011099 0.97 1.57 1.0875 1.210 1.2500
## Malta 0.8058333 0.14761488 12 0.05011099 0.54 1.00 0.6925 0.850 0.9250
## PDB 0.9616667 0.22714966 12 0.05011099 0.48 1.31 0.9275 1.005 1.0775
## Sabouraud 0.6225000 0.08114241 12 0.05011099 0.50 0.76 0.5725 0.610 0.6650
##
## Alpha: 0.05 ; DF Error: 32
## Critical Value of Studentized Range: 3.831616
##
## Minimun Significant Difference: 0.1920061
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Czapeck 1.2041667 a
## PDB 0.9616667 b
## Malta 0.8058333 bc
## Sabouraud 0.6225000 coutHSD<-HSD.test(ANOVA, "FactorB",console=TRUE)##
## Study: ANOVA ~ "FactorB"
##
## HSD Test for CMI
##
## Mean Square Error: 0.03013333
##
## FactorB, means
##
## CMI std r se Min Max Q25 Q50
## Bacillus cereus 0.9150000 0.2898432 12 0.05011099 0.55 1.57 0.6775 0.945
## Proteus mirabilis 0.9241667 0.2923714 12 0.05011099 0.50 1.35 0.6275 0.960
## Staphylococcus aureus 0.8500000 0.2724969 12 0.05011099 0.48 1.31 0.6350 0.850
## Streptococcus pyogenes 0.9050000 0.2356230 12 0.05011099 0.58 1.28 0.7300 0.915
## Q75
## Bacillus cereus 1.0350
## Proteus mirabilis 1.1325
## Staphylococcus aureus 1.0150
## Streptococcus pyogenes 1.0950
##
## Alpha: 0.05 ; DF Error: 32
## Critical Value of Studentized Range: 3.831616
##
## Minimun Significant Difference: 0.1920061
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Proteus mirabilis 0.9241667 a
## Bacillus cereus 0.9150000 a
## Streptococcus pyogenes 0.9050000 a
## Staphylococcus aureus 0.8500000 a