DF_proyecto
Maria Valentina Gomez Aguilar
2025-04-22
Diseño Factorial
Problema a analizar: Se busca determinar el efecto de cuatro medios diferentes sobre la concentracion minima inhibitoria frente a cuatro bacterias patogenas.
## Warning: package 'readxl' was built under R version 4.4.3## [1] "Medio" "Bacteria" "Replica" "CMI"## tibble [48 × 4] (S3: tbl_df/tbl/data.frame)
## $ Medio : chr [1:48] "Sabouraud" "Sabouraud" "Sabouraud" "Sabouraud" ...
## $ Bacteria: chr [1:48] "Staphylococcus aureus" "Staphylococcus aureus" "Staphylococcus aureus" "Bacillus cereus" ...
## $ Replica : num [1:48] 1 2 3 1 2 3 1 2 3 1 ...
## $ CMI : num [1:48] 0.65 0.59 0.66 0.76 0.68 0.55 0.62 0.41 0.43 0.51 ...Diagrama Box Plot
## Analisis Acorde al grafico de box plot se puede evidenciar que
Bacillus cereus muestra un crecimiento notablemente alto en los medios
PDB y Sabouraud, con medianas superiores a 1.2.Las medianas de
Enterobacter cloacae muestran un crecimiento moderado en todos los
medios, pero el medio Czapek parece ser el menos efectivo.Escherichia
coli tiene un crecimiento más robusto en Malta y PDB, con medianas que
superan 1.0. Staphylococcus aureus presenta un crecimiento bajo en todos
los medios, con medianas cercanas a 0.8 y menos, especialmente en el
medio Sabouraud.
Calculo ANOVA y modelo lineal
## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.7770 0.5923 16.949 9.04e-07 ***
## FactorB 3 0.1014 0.0338 0.968 0.420
## FactorA:FactorB 9 0.1854 0.0206 0.589 0.796
## Residuals 32 1.1183 0.0349
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.7770 0.5923 16.949 9.04e-07 ***
## FactorB 3 0.1014 0.0338 0.968 0.420
## FactorA:FactorB 9 0.1854 0.0206 0.589 0.796
## Residuals 32 1.1183 0.0349
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Call:
## lm(formula = CMI ~ (FactorA + FactorB + FactorA:FactorB))
##
## Residuals:
## Min 1Q Median 3Q Max
## -0.44667 -0.09083 0.00667 0.10083 0.38333
##
## Coefficients:
## Estimate Std. Error t value
## (Intercept) 1.28333 0.10793 11.890
## FactorAMalta -0.43000 0.15264 -2.817
## FactorAPDB -0.42333 0.15264 -2.773
## FactorASabouraud -0.62000 0.15264 -4.062
## FactorBEnterobacter cloacae -0.29000 0.15264 -1.900
## FactorBEscherichia coli -0.21000 0.15264 -1.376
## FactorBStaphylococcus aureus -0.19000 0.15264 -1.245
## FactorAMalta:FactorBEnterobacter cloacae 0.14667 0.21586 0.679
## FactorAPDB:FactorBEnterobacter cloacae 0.40333 0.21586 1.868
## FactorASabouraud:FactorBEnterobacter cloacae 0.11333 0.21586 0.525
## FactorAMalta:FactorBEscherichia coli 0.22000 0.21586 1.019
## FactorAPDB:FactorBEscherichia coli 0.37333 0.21586 1.729
## FactorASabouraud:FactorBEscherichia coli 0.12000 0.21586 0.556
## FactorAMalta:FactorBStaphylococcus aureus 0.08333 0.21586 0.386
## FactorAPDB:FactorBStaphylococcus aureus 0.25667 0.21586 1.189
## FactorASabouraud:FactorBStaphylococcus aureus 0.16000 0.21586 0.741
## Pr(>|t|)
## (Intercept) 2.79e-13 ***
## FactorAMalta 0.008235 **
## FactorAPDB 0.009176 **
## FactorASabouraud 0.000294 ***
## FactorBEnterobacter cloacae 0.066489 .
## FactorBEscherichia coli 0.178438
## FactorBStaphylococcus aureus 0.222256
## FactorAMalta:FactorBEnterobacter cloacae 0.501744
## FactorAPDB:FactorBEnterobacter cloacae 0.070877 .
## FactorASabouraud:FactorBEnterobacter cloacae 0.603187
## FactorAMalta:FactorBEscherichia coli 0.315771
## FactorAPDB:FactorBEscherichia coli 0.093359 .
## FactorASabouraud:FactorBEscherichia coli 0.582142
## FactorAMalta:FactorBStaphylococcus aureus 0.702018
## FactorAPDB:FactorBStaphylococcus aureus 0.243180
## FactorASabouraud:FactorBStaphylococcus aureus 0.463973
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 0.1869 on 32 degrees of freedom
## Multiple R-squared: 0.6486, Adjusted R-squared: 0.4838
## F-statistic: 3.937 on 15 and 32 DF, p-value: 0.000554Graficas de efectos principales e interacciones
## Warning: package 'phia' was built under R version 4.4.3## Cargando paquete requerido: car## Warning: package 'car' was built under R version 4.4.3## Cargando paquete requerido: carData## Warning: package 'carData' was built under R version 4.4.2
Analisis de la idoneidad del modelo
Normalidad de residuos
##
## Shapiro-Wilk normality test
##
## data: rstandard(Modelo)
## W = 0.9868, p-value = 0.8603Prueba de homocedasticidad o igualdad de varianzas
## Non-constant Variance Score Test
## Variance formula: ~ fitted.values
## Chisquare = 3.409938, Df = 1, p = 0.064805Revision grafica de supuestos
Calculo del efecto (ANOVA)
## Warning: package 'lsr' was built under R version 4.4.3## eta.sq eta.sq.part
## FactorA 0.55842287 0.61374042
## FactorB 0.03187821 0.08316268
## FactorA:FactorB 0.05825363 0.14218643Pruebas aposteriori(Comparaciones multiples de medias)
Prueba de Tukey
## Warning: package 'agricolae' was built under R version 4.4.3## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = Modelo)
##
## $FactorA
## diff lwr upr p adj
## Malta-Czapeck -0.3175000 -0.52427689 -0.110723108 0.0012174
## PDB-Czapeck -0.1650000 -0.37177689 0.041776892 0.1558035
## Sabouraud-Czapeck -0.5216667 -0.72844356 -0.314889775 0.0000006
## PDB-Malta 0.1525000 -0.05427689 0.359276892 0.2098549
## Sabouraud-Malta -0.2041667 -0.41094356 0.002610225 0.0539833
## Sabouraud-PDB -0.3566667 -0.56344356 -0.149889775 0.0002867
##
## $FactorB
## diff lwr upr
## Enterobacter cloacae-Bacillus cereus -0.12416667 -0.3309436 0.08261022
## Escherichia coli-Bacillus cereus -0.03166667 -0.2384436 0.17511022
## Staphylococcus aureus-Bacillus cereus -0.06500000 -0.2717769 0.14177689
## Escherichia coli-Enterobacter cloacae 0.09250000 -0.1142769 0.29927689
## Staphylococcus aureus-Enterobacter cloacae 0.05916667 -0.1476102 0.26594356
## Staphylococcus aureus-Escherichia coli -0.03333333 -0.2401102 0.17344356
## p adj
## Enterobacter cloacae-Bacillus cereus 0.3783933
## Escherichia coli-Bacillus cereus 0.9755196
## Staphylococcus aureus-Bacillus cereus 0.8293080
## Escherichia coli-Enterobacter cloacae 0.6239154
## Staphylococcus aureus-Enterobacter cloacae 0.8650390
## Staphylococcus aureus-Escherichia coli 0.9716598
##
## $`FactorA:FactorB`
## diff
## Malta:Bacillus cereus-Czapeck:Bacillus cereus -0.430000000
## PDB:Bacillus cereus-Czapeck:Bacillus cereus -0.423333333
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -0.620000000
## Czapeck:Enterobacter cloacae-Czapeck:Bacillus cereus -0.290000000
## Malta:Enterobacter cloacae-Czapeck:Bacillus cereus -0.573333333
## PDB:Enterobacter cloacae-Czapeck:Bacillus cereus -0.310000000
## Sabouraud:Enterobacter cloacae-Czapeck:Bacillus cereus -0.796666667
## Czapeck:Escherichia coli-Czapeck:Bacillus cereus -0.210000000
## Malta:Escherichia coli-Czapeck:Bacillus cereus -0.420000000
## PDB:Escherichia coli-Czapeck:Bacillus cereus -0.260000000
## Sabouraud:Escherichia coli-Czapeck:Bacillus cereus -0.710000000
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus -0.190000000
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus -0.536666667
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus -0.356666667
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus -0.650000000
## PDB:Bacillus cereus-Malta:Bacillus cereus 0.006666667
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus -0.190000000
## Czapeck:Enterobacter cloacae-Malta:Bacillus cereus 0.140000000
## Malta:Enterobacter cloacae-Malta:Bacillus cereus -0.143333333
## PDB:Enterobacter cloacae-Malta:Bacillus cereus 0.120000000
## Sabouraud:Enterobacter cloacae-Malta:Bacillus cereus -0.366666667
## Czapeck:Escherichia coli-Malta:Bacillus cereus 0.220000000
## Malta:Escherichia coli-Malta:Bacillus cereus 0.010000000
## PDB:Escherichia coli-Malta:Bacillus cereus 0.170000000
## Sabouraud:Escherichia coli-Malta:Bacillus cereus -0.280000000
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus 0.240000000
## Malta:Staphylococcus aureus-Malta:Bacillus cereus -0.106666667
## PDB:Staphylococcus aureus-Malta:Bacillus cereus 0.073333333
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus -0.220000000
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus -0.196666667
## Czapeck:Enterobacter cloacae-PDB:Bacillus cereus 0.133333333
## Malta:Enterobacter cloacae-PDB:Bacillus cereus -0.150000000
## PDB:Enterobacter cloacae-PDB:Bacillus cereus 0.113333333
## Sabouraud:Enterobacter cloacae-PDB:Bacillus cereus -0.373333333
## Czapeck:Escherichia coli-PDB:Bacillus cereus 0.213333333
## Malta:Escherichia coli-PDB:Bacillus cereus 0.003333333
## PDB:Escherichia coli-PDB:Bacillus cereus 0.163333333
## Sabouraud:Escherichia coli-PDB:Bacillus cereus -0.286666667
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus 0.233333333
## Malta:Staphylococcus aureus-PDB:Bacillus cereus -0.113333333
## PDB:Staphylococcus aureus-PDB:Bacillus cereus 0.066666667
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus -0.226666667
## Czapeck:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.330000000
## Malta:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.046666667
## PDB:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.310000000
## Sabouraud:Enterobacter cloacae-Sabouraud:Bacillus cereus -0.176666667
## Czapeck:Escherichia coli-Sabouraud:Bacillus cereus 0.410000000
## Malta:Escherichia coli-Sabouraud:Bacillus cereus 0.200000000
## PDB:Escherichia coli-Sabouraud:Bacillus cereus 0.360000000
## Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus -0.090000000
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.430000000
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.083333333
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.263333333
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.030000000
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.283333333
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.020000000
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.506666667
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae 0.080000000
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae -0.130000000
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae 0.030000000
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae -0.420000000
## Czapeck:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.100000000
## Malta:Staphylococcus aureus-Czapeck:Enterobacter cloacae -0.246666667
## PDB:Staphylococcus aureus-Czapeck:Enterobacter cloacae -0.066666667
## Sabouraud:Staphylococcus aureus-Czapeck:Enterobacter cloacae -0.360000000
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae 0.263333333
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae -0.223333333
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae 0.363333333
## Malta:Escherichia coli-Malta:Enterobacter cloacae 0.153333333
## PDB:Escherichia coli-Malta:Enterobacter cloacae 0.313333333
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae -0.136666667
## Czapeck:Staphylococcus aureus-Malta:Enterobacter cloacae 0.383333333
## Malta:Staphylococcus aureus-Malta:Enterobacter cloacae 0.036666667
## PDB:Staphylococcus aureus-Malta:Enterobacter cloacae 0.216666667
## Sabouraud:Staphylococcus aureus-Malta:Enterobacter cloacae -0.076666667
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae -0.486666667
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae 0.100000000
## Malta:Escherichia coli-PDB:Enterobacter cloacae -0.110000000
## PDB:Escherichia coli-PDB:Enterobacter cloacae 0.050000000
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae -0.400000000
## Czapeck:Staphylococcus aureus-PDB:Enterobacter cloacae 0.120000000
## Malta:Staphylococcus aureus-PDB:Enterobacter cloacae -0.226666667
## PDB:Staphylococcus aureus-PDB:Enterobacter cloacae -0.046666667
## Sabouraud:Staphylococcus aureus-PDB:Enterobacter cloacae -0.340000000
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 0.586666667
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae 0.376666667
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae 0.536666667
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae 0.086666667
## Czapeck:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.606666667
## Malta:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.260000000
## PDB:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.440000000
## Sabouraud:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.146666667
## Malta:Escherichia coli-Czapeck:Escherichia coli -0.210000000
## PDB:Escherichia coli-Czapeck:Escherichia coli -0.050000000
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli -0.500000000
## Czapeck:Staphylococcus aureus-Czapeck:Escherichia coli 0.020000000
## Malta:Staphylococcus aureus-Czapeck:Escherichia coli -0.326666667
## PDB:Staphylococcus aureus-Czapeck:Escherichia coli -0.146666667
## Sabouraud:Staphylococcus aureus-Czapeck:Escherichia coli -0.440000000
## PDB:Escherichia coli-Malta:Escherichia coli 0.160000000
## Sabouraud:Escherichia coli-Malta:Escherichia coli -0.290000000
## Czapeck:Staphylococcus aureus-Malta:Escherichia coli 0.230000000
## Malta:Staphylococcus aureus-Malta:Escherichia coli -0.116666667
## PDB:Staphylococcus aureus-Malta:Escherichia coli 0.063333333
## Sabouraud:Staphylococcus aureus-Malta:Escherichia coli -0.230000000
## Sabouraud:Escherichia coli-PDB:Escherichia coli -0.450000000
## Czapeck:Staphylococcus aureus-PDB:Escherichia coli 0.070000000
## Malta:Staphylococcus aureus-PDB:Escherichia coli -0.276666667
## PDB:Staphylococcus aureus-PDB:Escherichia coli -0.096666667
## Sabouraud:Staphylococcus aureus-PDB:Escherichia coli -0.390000000
## Czapeck:Staphylococcus aureus-Sabouraud:Escherichia coli 0.520000000
## Malta:Staphylococcus aureus-Sabouraud:Escherichia coli 0.173333333
## PDB:Staphylococcus aureus-Sabouraud:Escherichia coli 0.353333333
## Sabouraud:Staphylococcus aureus-Sabouraud:Escherichia coli 0.060000000
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.346666667
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.166666667
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.460000000
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus 0.180000000
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus -0.113333333
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus -0.293333333
## lwr
## Malta:Bacillus cereus-Czapeck:Bacillus cereus -0.99599775
## PDB:Bacillus cereus-Czapeck:Bacillus cereus -0.98933108
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -1.18599775
## Czapeck:Enterobacter cloacae-Czapeck:Bacillus cereus -0.85599775
## Malta:Enterobacter cloacae-Czapeck:Bacillus cereus -1.13933108
## PDB:Enterobacter cloacae-Czapeck:Bacillus cereus -0.87599775
## Sabouraud:Enterobacter cloacae-Czapeck:Bacillus cereus -1.36266442
## Czapeck:Escherichia coli-Czapeck:Bacillus cereus -0.77599775
## Malta:Escherichia coli-Czapeck:Bacillus cereus -0.98599775
## PDB:Escherichia coli-Czapeck:Bacillus cereus -0.82599775
## Sabouraud:Escherichia coli-Czapeck:Bacillus cereus -1.27599775
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus -0.75599775
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus -1.10266442
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus -0.92266442
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus -1.21599775
## PDB:Bacillus cereus-Malta:Bacillus cereus -0.55933108
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus -0.75599775
## Czapeck:Enterobacter cloacae-Malta:Bacillus cereus -0.42599775
## Malta:Enterobacter cloacae-Malta:Bacillus cereus -0.70933108
## PDB:Enterobacter cloacae-Malta:Bacillus cereus -0.44599775
## Sabouraud:Enterobacter cloacae-Malta:Bacillus cereus -0.93266442
## Czapeck:Escherichia coli-Malta:Bacillus cereus -0.34599775
## Malta:Escherichia coli-Malta:Bacillus cereus -0.55599775
## PDB:Escherichia coli-Malta:Bacillus cereus -0.39599775
## Sabouraud:Escherichia coli-Malta:Bacillus cereus -0.84599775
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus -0.32599775
## Malta:Staphylococcus aureus-Malta:Bacillus cereus -0.67266442
## PDB:Staphylococcus aureus-Malta:Bacillus cereus -0.49266442
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus -0.78599775
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus -0.76266442
## Czapeck:Enterobacter cloacae-PDB:Bacillus cereus -0.43266442
## Malta:Enterobacter cloacae-PDB:Bacillus cereus -0.71599775
## PDB:Enterobacter cloacae-PDB:Bacillus cereus -0.45266442
## Sabouraud:Enterobacter cloacae-PDB:Bacillus cereus -0.93933108
## Czapeck:Escherichia coli-PDB:Bacillus cereus -0.35266442
## Malta:Escherichia coli-PDB:Bacillus cereus -0.56266442
## PDB:Escherichia coli-PDB:Bacillus cereus -0.40266442
## Sabouraud:Escherichia coli-PDB:Bacillus cereus -0.85266442
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus -0.33266442
## Malta:Staphylococcus aureus-PDB:Bacillus cereus -0.67933108
## PDB:Staphylococcus aureus-PDB:Bacillus cereus -0.49933108
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus -0.79266442
## Czapeck:Enterobacter cloacae-Sabouraud:Bacillus cereus -0.23599775
## Malta:Enterobacter cloacae-Sabouraud:Bacillus cereus -0.51933108
## PDB:Enterobacter cloacae-Sabouraud:Bacillus cereus -0.25599775
## Sabouraud:Enterobacter cloacae-Sabouraud:Bacillus cereus -0.74266442
## Czapeck:Escherichia coli-Sabouraud:Bacillus cereus -0.15599775
## Malta:Escherichia coli-Sabouraud:Bacillus cereus -0.36599775
## PDB:Escherichia coli-Sabouraud:Bacillus cereus -0.20599775
## Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus -0.65599775
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.13599775
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.48266442
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.30266442
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus -0.59599775
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.84933108
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.58599775
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae -1.07266442
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae -0.48599775
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae -0.69599775
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae -0.53599775
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae -0.98599775
## Czapeck:Staphylococcus aureus-Czapeck:Enterobacter cloacae -0.46599775
## Malta:Staphylococcus aureus-Czapeck:Enterobacter cloacae -0.81266442
## PDB:Staphylococcus aureus-Czapeck:Enterobacter cloacae -0.63266442
## Sabouraud:Staphylococcus aureus-Czapeck:Enterobacter cloacae -0.92599775
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae -0.30266442
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae -0.78933108
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae -0.20266442
## Malta:Escherichia coli-Malta:Enterobacter cloacae -0.41266442
## PDB:Escherichia coli-Malta:Enterobacter cloacae -0.25266442
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae -0.70266442
## Czapeck:Staphylococcus aureus-Malta:Enterobacter cloacae -0.18266442
## Malta:Staphylococcus aureus-Malta:Enterobacter cloacae -0.52933108
## PDB:Staphylococcus aureus-Malta:Enterobacter cloacae -0.34933108
## Sabouraud:Staphylococcus aureus-Malta:Enterobacter cloacae -0.64266442
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae -1.05266442
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae -0.46599775
## Malta:Escherichia coli-PDB:Enterobacter cloacae -0.67599775
## PDB:Escherichia coli-PDB:Enterobacter cloacae -0.51599775
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae -0.96599775
## Czapeck:Staphylococcus aureus-PDB:Enterobacter cloacae -0.44599775
## Malta:Staphylococcus aureus-PDB:Enterobacter cloacae -0.79266442
## PDB:Staphylococcus aureus-PDB:Enterobacter cloacae -0.61266442
## Sabouraud:Staphylococcus aureus-PDB:Enterobacter cloacae -0.90599775
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 0.02066892
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae -0.18933108
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae -0.02933108
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae -0.47933108
## Czapeck:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.04066892
## Malta:Staphylococcus aureus-Sabouraud:Enterobacter cloacae -0.30599775
## PDB:Staphylococcus aureus-Sabouraud:Enterobacter cloacae -0.12599775
## Sabouraud:Staphylococcus aureus-Sabouraud:Enterobacter cloacae -0.41933108
## Malta:Escherichia coli-Czapeck:Escherichia coli -0.77599775
## PDB:Escherichia coli-Czapeck:Escherichia coli -0.61599775
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli -1.06599775
## Czapeck:Staphylococcus aureus-Czapeck:Escherichia coli -0.54599775
## Malta:Staphylococcus aureus-Czapeck:Escherichia coli -0.89266442
## PDB:Staphylococcus aureus-Czapeck:Escherichia coli -0.71266442
## Sabouraud:Staphylococcus aureus-Czapeck:Escherichia coli -1.00599775
## PDB:Escherichia coli-Malta:Escherichia coli -0.40599775
## Sabouraud:Escherichia coli-Malta:Escherichia coli -0.85599775
## Czapeck:Staphylococcus aureus-Malta:Escherichia coli -0.33599775
## Malta:Staphylococcus aureus-Malta:Escherichia coli -0.68266442
## PDB:Staphylococcus aureus-Malta:Escherichia coli -0.50266442
## Sabouraud:Staphylococcus aureus-Malta:Escherichia coli -0.79599775
## Sabouraud:Escherichia coli-PDB:Escherichia coli -1.01599775
## Czapeck:Staphylococcus aureus-PDB:Escherichia coli -0.49599775
## Malta:Staphylococcus aureus-PDB:Escherichia coli -0.84266442
## PDB:Staphylococcus aureus-PDB:Escherichia coli -0.66266442
## Sabouraud:Staphylococcus aureus-PDB:Escherichia coli -0.95599775
## Czapeck:Staphylococcus aureus-Sabouraud:Escherichia coli -0.04599775
## Malta:Staphylococcus aureus-Sabouraud:Escherichia coli -0.39266442
## PDB:Staphylococcus aureus-Sabouraud:Escherichia coli -0.21266442
## Sabouraud:Staphylococcus aureus-Sabouraud:Escherichia coli -0.50599775
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.91266442
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus -0.73266442
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus -1.02599775
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus -0.38599775
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus -0.67933108
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus -0.85933108
## upr
## Malta:Bacillus cereus-Czapeck:Bacillus cereus 0.135997750
## PDB:Bacillus cereus-Czapeck:Bacillus cereus 0.142664417
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -0.054002250
## Czapeck:Enterobacter cloacae-Czapeck:Bacillus cereus 0.275997750
## Malta:Enterobacter cloacae-Czapeck:Bacillus cereus -0.007335583
## PDB:Enterobacter cloacae-Czapeck:Bacillus cereus 0.255997750
## Sabouraud:Enterobacter cloacae-Czapeck:Bacillus cereus -0.230668916
## Czapeck:Escherichia coli-Czapeck:Bacillus cereus 0.355997750
## Malta:Escherichia coli-Czapeck:Bacillus cereus 0.145997750
## PDB:Escherichia coli-Czapeck:Bacillus cereus 0.305997750
## Sabouraud:Escherichia coli-Czapeck:Bacillus cereus -0.144002250
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus 0.375997750
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus 0.029331084
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus 0.209331084
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus -0.084002250
## PDB:Bacillus cereus-Malta:Bacillus cereus 0.572664417
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus 0.375997750
## Czapeck:Enterobacter cloacae-Malta:Bacillus cereus 0.705997750
## Malta:Enterobacter cloacae-Malta:Bacillus cereus 0.422664417
## PDB:Enterobacter cloacae-Malta:Bacillus cereus 0.685997750
## Sabouraud:Enterobacter cloacae-Malta:Bacillus cereus 0.199331084
## Czapeck:Escherichia coli-Malta:Bacillus cereus 0.785997750
## Malta:Escherichia coli-Malta:Bacillus cereus 0.575997750
## PDB:Escherichia coli-Malta:Bacillus cereus 0.735997750
## Sabouraud:Escherichia coli-Malta:Bacillus cereus 0.285997750
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus 0.805997750
## Malta:Staphylococcus aureus-Malta:Bacillus cereus 0.459331084
## PDB:Staphylococcus aureus-Malta:Bacillus cereus 0.639331084
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus 0.345997750
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus 0.369331084
## Czapeck:Enterobacter cloacae-PDB:Bacillus cereus 0.699331084
## Malta:Enterobacter cloacae-PDB:Bacillus cereus 0.415997750
## PDB:Enterobacter cloacae-PDB:Bacillus cereus 0.679331084
## Sabouraud:Enterobacter cloacae-PDB:Bacillus cereus 0.192664417
## Czapeck:Escherichia coli-PDB:Bacillus cereus 0.779331084
## Malta:Escherichia coli-PDB:Bacillus cereus 0.569331084
## PDB:Escherichia coli-PDB:Bacillus cereus 0.729331084
## Sabouraud:Escherichia coli-PDB:Bacillus cereus 0.279331084
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus 0.799331084
## Malta:Staphylococcus aureus-PDB:Bacillus cereus 0.452664417
## PDB:Staphylococcus aureus-PDB:Bacillus cereus 0.632664417
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus 0.339331084
## Czapeck:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.895997750
## Malta:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.612664417
## PDB:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.875997750
## Sabouraud:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.389331084
## Czapeck:Escherichia coli-Sabouraud:Bacillus cereus 0.975997750
## Malta:Escherichia coli-Sabouraud:Bacillus cereus 0.765997750
## PDB:Escherichia coli-Sabouraud:Bacillus cereus 0.925997750
## Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus 0.475997750
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.995997750
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.649331084
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.829331084
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.535997750
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.282664417
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.545997750
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.059331084
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae 0.645997750
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae 0.435997750
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae 0.595997750
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae 0.145997750
## Czapeck:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.665997750
## Malta:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.319331084
## PDB:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.499331084
## Sabouraud:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.205997750
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae 0.829331084
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae 0.342664417
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae 0.929331084
## Malta:Escherichia coli-Malta:Enterobacter cloacae 0.719331084
## PDB:Escherichia coli-Malta:Enterobacter cloacae 0.879331084
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae 0.429331084
## Czapeck:Staphylococcus aureus-Malta:Enterobacter cloacae 0.949331084
## Malta:Staphylococcus aureus-Malta:Enterobacter cloacae 0.602664417
## PDB:Staphylococcus aureus-Malta:Enterobacter cloacae 0.782664417
## Sabouraud:Staphylococcus aureus-Malta:Enterobacter cloacae 0.489331084
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae 0.079331084
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae 0.665997750
## Malta:Escherichia coli-PDB:Enterobacter cloacae 0.455997750
## PDB:Escherichia coli-PDB:Enterobacter cloacae 0.615997750
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae 0.165997750
## Czapeck:Staphylococcus aureus-PDB:Enterobacter cloacae 0.685997750
## Malta:Staphylococcus aureus-PDB:Enterobacter cloacae 0.339331084
## PDB:Staphylococcus aureus-PDB:Enterobacter cloacae 0.519331084
## Sabouraud:Staphylococcus aureus-PDB:Enterobacter cloacae 0.225997750
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 1.152664417
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae 0.942664417
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae 1.102664417
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae 0.652664417
## Czapeck:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 1.172664417
## Malta:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.825997750
## PDB:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 1.005997750
## Sabouraud:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.712664417
## Malta:Escherichia coli-Czapeck:Escherichia coli 0.355997750
## PDB:Escherichia coli-Czapeck:Escherichia coli 0.515997750
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli 0.065997750
## Czapeck:Staphylococcus aureus-Czapeck:Escherichia coli 0.585997750
## Malta:Staphylococcus aureus-Czapeck:Escherichia coli 0.239331084
## PDB:Staphylococcus aureus-Czapeck:Escherichia coli 0.419331084
## Sabouraud:Staphylococcus aureus-Czapeck:Escherichia coli 0.125997750
## PDB:Escherichia coli-Malta:Escherichia coli 0.725997750
## Sabouraud:Escherichia coli-Malta:Escherichia coli 0.275997750
## Czapeck:Staphylococcus aureus-Malta:Escherichia coli 0.795997750
## Malta:Staphylococcus aureus-Malta:Escherichia coli 0.449331084
## PDB:Staphylococcus aureus-Malta:Escherichia coli 0.629331084
## Sabouraud:Staphylococcus aureus-Malta:Escherichia coli 0.335997750
## Sabouraud:Escherichia coli-PDB:Escherichia coli 0.115997750
## Czapeck:Staphylococcus aureus-PDB:Escherichia coli 0.635997750
## Malta:Staphylococcus aureus-PDB:Escherichia coli 0.289331084
## PDB:Staphylococcus aureus-PDB:Escherichia coli 0.469331084
## Sabouraud:Staphylococcus aureus-PDB:Escherichia coli 0.175997750
## Czapeck:Staphylococcus aureus-Sabouraud:Escherichia coli 1.085997750
## Malta:Staphylococcus aureus-Sabouraud:Escherichia coli 0.739331084
## PDB:Staphylococcus aureus-Sabouraud:Escherichia coli 0.919331084
## Sabouraud:Staphylococcus aureus-Sabouraud:Escherichia coli 0.625997750
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.219331084
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.399331084
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.105997750
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus 0.745997750
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus 0.452664417
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus 0.272664417
## p adj
## Malta:Bacillus cereus-Czapeck:Bacillus cereus 0.3091279
## PDB:Bacillus cereus-Czapeck:Bacillus cereus 0.3320603
## Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus 0.0210996
## Czapeck:Enterobacter cloacae-Czapeck:Bacillus cereus 0.8574816
## Malta:Enterobacter cloacae-Czapeck:Bacillus cereus 0.0446278
## PDB:Enterobacter cloacae-Czapeck:Bacillus cereus 0.7914966
## Sabouraud:Enterobacter cloacae-Czapeck:Bacillus cereus 0.0009522
## Czapeck:Escherichia coli-Czapeck:Bacillus cereus 0.9880624
## Malta:Escherichia coli-Czapeck:Bacillus cereus 0.3438946
## PDB:Escherichia coli-Czapeck:Bacillus cereus 0.9308934
## Sabouraud:Escherichia coli-Czapeck:Bacillus cereus 0.0045189
## Czapeck:Staphylococcus aureus-Czapeck:Bacillus cereus 0.9954402
## Malta:Staphylococcus aureus-Czapeck:Bacillus cereus 0.0777560
## PDB:Staphylococcus aureus-Czapeck:Bacillus cereus 0.6022157
## Sabouraud:Staphylococcus aureus-Czapeck:Bacillus cereus 0.0127752
## PDB:Bacillus cereus-Malta:Bacillus cereus 1.0000000
## Sabouraud:Bacillus cereus-Malta:Bacillus cereus 0.9954402
## Czapeck:Enterobacter cloacae-Malta:Bacillus cereus 0.9998448
## Malta:Enterobacter cloacae-Malta:Bacillus cereus 0.9997946
## PDB:Enterobacter cloacae-Malta:Bacillus cereus 0.9999769
## Sabouraud:Enterobacter cloacae-Malta:Bacillus cereus 0.5590154
## Czapeck:Escherichia coli-Malta:Bacillus cereus 0.9818584
## Malta:Escherichia coli-Malta:Bacillus cereus 1.0000000
## PDB:Escherichia coli-Malta:Bacillus cereus 0.9985710
## Sabouraud:Escherichia coli-Malta:Bacillus cereus 0.8855220
## Czapeck:Staphylococcus aureus-Malta:Bacillus cereus 0.9623535
## Malta:Staphylococcus aureus-Malta:Bacillus cereus 0.9999950
## PDB:Staphylococcus aureus-Malta:Bacillus cereus 1.0000000
## Sabouraud:Staphylococcus aureus-Malta:Bacillus cereus 0.9818584
## Sabouraud:Bacillus cereus-PDB:Bacillus cereus 0.9935883
## Czapeck:Enterobacter cloacae-PDB:Bacillus cereus 0.9999141
## Malta:Enterobacter cloacae-PDB:Bacillus cereus 0.9996496
## PDB:Enterobacter cloacae-PDB:Bacillus cereus 0.9999889
## Sabouraud:Enterobacter cloacae-PDB:Bacillus cereus 0.5303381
## Czapeck:Escherichia coli-PDB:Bacillus cereus 0.9862161
## Malta:Escherichia coli-PDB:Bacillus cereus 1.0000000
## PDB:Escherichia coli-PDB:Bacillus cereus 0.9990783
## Sabouraud:Escherichia coli-PDB:Bacillus cereus 0.8672162
## Czapeck:Staphylococcus aureus-PDB:Bacillus cereus 0.9700470
## Malta:Staphylococcus aureus-PDB:Bacillus cereus 0.9999889
## PDB:Staphylococcus aureus-PDB:Bacillus cereus 1.0000000
## Sabouraud:Staphylococcus aureus-PDB:Bacillus cereus 0.9765097
## Czapeck:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.7146700
## Malta:Enterobacter cloacae-Sabouraud:Bacillus cereus 1.0000000
## PDB:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.7914966
## Sabouraud:Enterobacter cloacae-Sabouraud:Bacillus cereus 0.9978438
## Czapeck:Escherichia coli-Sabouraud:Bacillus cereus 0.3807964
## Malta:Escherichia coli-Sabouraud:Bacillus cereus 0.9924558
## PDB:Escherichia coli-Sabouraud:Bacillus cereus 0.5878167
## Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus 0.9999995
## Czapeck:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.3091279
## Malta:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.9999998
## PDB:Staphylococcus aureus-Sabouraud:Bacillus cereus 0.9243270
## Sabouraud:Staphylococcus aureus-Sabouraud:Bacillus cereus 1.0000000
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.8765650
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae 1.0000000
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.1192305
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae 0.9999999
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae 0.9999371
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae 1.0000000
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae 0.3438946
## Czapeck:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.9999979
## Malta:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.9533224
## PDB:Staphylococcus aureus-Czapeck:Enterobacter cloacae 1.0000000
## Sabouraud:Staphylococcus aureus-Czapeck:Enterobacter cloacae 0.5878167
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae 0.9243270
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae 0.9793157
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae 0.5734101
## Malta:Escherichia coli-Malta:Enterobacter cloacae 0.9995484
## PDB:Escherichia coli-Malta:Enterobacter cloacae 0.7793516
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae 0.9998839
## Czapeck:Staphylococcus aureus-Malta:Enterobacter cloacae 0.4878719
## Malta:Staphylococcus aureus-Malta:Enterobacter cloacae 1.0000000
## PDB:Staphylococcus aureus-Malta:Enterobacter cloacae 0.9841534
## Sabouraud:Staphylococcus aureus-Malta:Enterobacter cloacae 0.9999999
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae 0.1561028
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae 0.9999979
## Malta:Escherichia coli-PDB:Enterobacter cloacae 0.9999925
## PDB:Escherichia coli-PDB:Enterobacter cloacae 1.0000000
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae 0.4196294
## Czapeck:Staphylococcus aureus-PDB:Enterobacter cloacae 0.9999769
## Malta:Staphylococcus aureus-PDB:Enterobacter cloacae 0.9765097
## PDB:Staphylococcus aureus-PDB:Enterobacter cloacae 1.0000000
## Sabouraud:Staphylococcus aureus-PDB:Enterobacter cloacae 0.6733826
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 0.0361881
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae 0.5160921
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae 0.0777560
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae 0.9999997
## Czapeck:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.0262462
## Malta:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.9308934
## PDB:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.2766356
## Sabouraud:Staphylococcus aureus-Sabouraud:Enterobacter cloacae 0.9997305
## Malta:Escherichia coli-Czapeck:Escherichia coli 0.9880624
## PDB:Escherichia coli-Czapeck:Escherichia coli 1.0000000
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli 0.1306267
## Czapeck:Staphylococcus aureus-Czapeck:Escherichia coli 1.0000000
## Malta:Staphylococcus aureus-Czapeck:Escherichia coli 0.7280722
## PDB:Staphylococcus aureus-Czapeck:Escherichia coli 0.9997305
## Sabouraud:Staphylococcus aureus-Czapeck:Escherichia coli 0.2766356
## PDB:Escherichia coli-Malta:Escherichia coli 0.9992678
## Sabouraud:Escherichia coli-Malta:Escherichia coli 0.8574816
## Czapeck:Staphylococcus aureus-Malta:Escherichia coli 0.9734250
## Malta:Staphylococcus aureus-Malta:Escherichia coli 0.9999839
## PDB:Staphylococcus aureus-Malta:Escherichia coli 1.0000000
## Sabouraud:Staphylococcus aureus-Malta:Escherichia coli 0.9734250
## Sabouraud:Escherichia coli-PDB:Escherichia coli 0.2464973
## Czapeck:Staphylococcus aureus-PDB:Escherichia coli 1.0000000
## Malta:Staphylococcus aureus-PDB:Escherichia coli 0.8940826
## PDB:Staphylococcus aureus-PDB:Escherichia coli 0.9999986
## Sabouraud:Staphylococcus aureus-PDB:Escherichia coli 0.4601213
## Czapeck:Staphylococcus aureus-Sabouraud:Escherichia coli 0.0989215
## Malta:Staphylococcus aureus-Sabouraud:Escherichia coli 0.9982389
## PDB:Staphylococcus aureus-Sabouraud:Escherichia coli 0.6165870
## Sabouraud:Staphylococcus aureus-Sabouraud:Escherichia coli 1.0000000
## Malta:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.6451644
## PDB:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.9988483
## Sabouraud:Staphylococcus aureus-Czapeck:Staphylococcus aureus 0.2187400
## PDB:Staphylococcus aureus-Malta:Staphylococcus aureus 0.9973765
## Sabouraud:Staphylococcus aureus-Malta:Staphylococcus aureus 0.9999889
## Sabouraud:Staphylococcus aureus-PDB:Staphylococcus aureus 0.8473689
##
## Study: ANOVA ~ "FactorA"
##
## HSD Test for CMI
##
## Mean Square Error: 0.03494792
##
## FactorA, means
##
## CMI std r se Min Max Q25 Q50 Q75
## Czapeck 1.1108333 0.2004295 12 0.05396597 0.81 1.57 0.9600 1.115 1.2050
## Malta 0.7933333 0.1317252 12 0.05396597 0.54 0.95 0.7150 0.820 0.8725
## PDB 0.9458333 0.2369295 12 0.05396597 0.48 1.31 0.8550 0.975 1.0600
## Sabouraud 0.5891667 0.1186636 12 0.05396597 0.41 0.76 0.4975 0.605 0.6650
##
## Alpha: 0.05 ; DF Error: 32
## Critical Value of Studentized Range: 3.831616
##
## Minimun Significant Difference: 0.2067769
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Czapeck 1.1108333 a
## PDB 0.9458333 ab
## Malta 0.7933333 bc
## Sabouraud 0.5891667 c##
## Study: ANOVA ~ "FactorB"
##
## HSD Test for CMI
##
## Mean Square Error: 0.03494792
##
## FactorB, means
##
## CMI std r se Min Max Q25 Q50
## Bacillus cereus 0.9150000 0.2898432 12 0.05396597 0.55 1.57 0.6775 0.945
## Enterobacter cloacae 0.7908333 0.2561412 12 0.05396597 0.41 1.24 0.6275 0.790
## Escherichia coli 0.8833333 0.2370398 12 0.05396597 0.46 1.19 0.7800 0.880
## Staphylococcus aureus 0.8500000 0.2724969 12 0.05396597 0.48 1.31 0.6350 0.850
## Q75
## Bacillus cereus 1.0350
## Enterobacter cloacae 0.9075
## Escherichia coli 1.0500
## Staphylococcus aureus 1.0150
##
## Alpha: 0.05 ; DF Error: 32
## Critical Value of Studentized Range: 3.831616
##
## Minimun Significant Difference: 0.2067769
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Bacillus cereus 0.9150000 a
## Escherichia coli 0.8833333 a
## Staphylococcus aureus 0.8500000 a
## Enterobacter cloacae 0.7908333 a