diseño factorial
David velandia
2025-04-21
Diseño Factorial
Problema a analizar: Se busca determinar el efecto de medios diferentes sobre la concentracion minima inhibitoria frente a algunas bacterias patogenas.
## [1] "Medio" "Bacteria" "Replica" "CMI"## tibble [36 × 4] (S3: tbl_df/tbl/data.frame)
## $ Medio : chr [1:36] "Sabouraud" "Sabouraud" "Sabouraud" "Sabouraud" ...
## $ Bacteria: chr [1:36] "Streptococcus pyogenes" "Streptococcus pyogenes" "Streptococcus pyogenes" "Bacillus cereus" ...
## $ Replica : num [1:36] 1 2 3 1 2 3 1 2 3 1 ...
## $ CMI : num [1:36] 0.75 0.58 0.58 0.76 0.68 0.55 0.51 0.46 0.75 1.28 ...Diagrama de Box Plot
## Warning: package 'gridExtra' was built under R version 4.4.3
Calculo ANOVA y modelo lineal
## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.4538 0.4846 21.021 6.7e-07 ***
## FactorB 2 0.0063 0.0031 0.136 0.873
## FactorA:FactorB 6 0.1458 0.0243 1.054 0.416
## Residuals 24 0.5533 0.0231
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.4538 0.4846 21.021 6.7e-07 ***
## FactorB 2 0.0063 0.0031 0.136 0.873
## FactorA:FactorB 6 0.1458 0.0243 1.054 0.416
## Residuals 24 0.5533 0.0231
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Call:
## lm(formula = CMI ~ (FactorA + FactorB + FactorA:FactorB))
##
## Residuals:
## Min 1Q Median 3Q Max
## -0.26000 -0.08417 -0.01667 0.10167 0.28667
##
## Coefficients:
## Estimate Std. Error t value
## (Intercept) 1.28333 0.08766 14.640
## FactorAMalta -0.43000 0.12397 -3.469
## FactorAPDB -0.42333 0.12397 -3.415
## FactorASabouraud -0.62000 0.12397 -5.001
## FactorBEscherichia coli -0.21000 0.12397 -1.694
## FactorBStreptococcus pyogenes -0.11667 0.12397 -0.941
## FactorAMalta:FactorBEscherichia coli 0.22000 0.17532 1.255
## FactorAPDB:FactorBEscherichia coli 0.37333 0.17532 2.129
## FactorASabouraud:FactorBEscherichia coli 0.12000 0.17532 0.684
## FactorAMalta:FactorBStreptococcus pyogenes 0.04000 0.17532 0.228
## FactorAPDB:FactorBStreptococcus pyogenes 0.29667 0.17532 1.692
## FactorASabouraud:FactorBStreptococcus pyogenes 0.09000 0.17532 0.513
## Pr(>|t|)
## (Intercept) 1.84e-13 ***
## FactorAMalta 0.00199 **
## FactorAPDB 0.00227 **
## FactorASabouraud 4.14e-05 ***
## FactorBEscherichia coli 0.10321
## FactorBStreptococcus pyogenes 0.35604
## FactorAMalta:FactorBEscherichia coli 0.22162
## FactorAPDB:FactorBEscherichia coli 0.04367 *
## FactorASabouraud:FactorBEscherichia coli 0.50024
## FactorAMalta:FactorBStreptococcus pyogenes 0.82146
## FactorAPDB:FactorBStreptococcus pyogenes 0.10356
## FactorASabouraud:FactorBStreptococcus pyogenes 0.61240
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 0.1518 on 24 degrees of freedom
## Multiple R-squared: 0.7438, Adjusted R-squared: 0.6263
## F-statistic: 6.333 on 11 and 24 DF, p-value: 8.163e-05
### Analisis de la idoneidad del modelo
## Normalidad de residuos
Shapiro-Wilk normality test
data: rstandard(Modelo)
W = 0.97244, p-value = 0.496
## Prueba de homocedasticidad o igualdad de varianzas
Cargando paquete requerido: carData
Non-constant Variance Score Test
Variance formula: ~ fitted.values
Chisquare = 1.866185, Df = 1, p = 0.17191
## Revision grafica de supuestos
<img src="CMI_files/figure-html/unnamed-chunk-6-1.png" width="672" /><img src="CMI_files/figure-html/unnamed-chunk-6-2.png" width="672" />
## Calculo del efecto (ANOVA)
Warning: package ‘lsr’ was built under R version 4.4.3
eta.sq eta.sq.part
FactorA 0.673318787 0.72434066
FactorB 0.002912661 0.01123908
FactorA:FactorB 0.067526399 0.20856380
### Pruebas aposteriori(Comparaciones multiples de medias)
## Prueba de Tukey
Tukey multiple comparisons of means
95% family-wise confidence level
Fit: aov(formula = Modelo)
$FactorA
diff lwr upr p adj
Malta-Czapeck -0.3433333 -0.54077804 -0.145888629 0.0003810
PDB-Czapeck -0.2000000 -0.39744470 -0.002555296 0.0463212
Sabouraud-Czapeck -0.5500000 -0.74744470 -0.352555296 0.0000004
PDB-Malta 0.1433333 -0.05411137 0.340778038 0.2149691
Sabouraud-Malta -0.2066667 -0.40411137 -0.009221962 0.0378511
Sabouraud-PDB -0.3500000 -0.54744470 -0.152555296 0.0003018
$FactorB
diff lwr upr
Escherichia coli-Bacillus cereus -0.03166667 -0.1864608 0.1231275
Streptococcus pyogenes-Bacillus cereus -0.01000000 -0.1647941 0.1447941
Streptococcus pyogenes-Escherichia coli 0.02166667 -0.1331275 0.1764608
p adj
Escherichia coli-Bacillus cereus 0.8667933
Streptococcus pyogenes-Bacillus cereus 0.9857622
Streptococcus pyogenes-Escherichia coli 0.9350491
$FactorA:FactorB
diff
Malta:Bacillus cereus-Czapeck:Bacillus cereus -0.430000000
PDB:Bacillus cereus-Czapeck:Bacillus cereus -0.423333333
Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -0.620000000
Czapeck:Escherichia coli-Czapeck:Bacillus cereus -0.210000000
Malta:Escherichia coli-Czapeck:Bacillus cereus -0.420000000
PDB:Escherichia coli-Czapeck:Bacillus cereus -0.260000000
Sabouraud:Escherichia coli-Czapeck:Bacillus cereus -0.710000000
Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.116666667
Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.506666667
PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.243333333
Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.646666667
PDB:Bacillus cereus-Malta:Bacillus cereus 0.006666667
Sabouraud:Bacillus cereus-Malta:Bacillus cereus -0.190000000
Czapeck:Escherichia coli-Malta:Bacillus cereus 0.220000000
Malta:Escherichia coli-Malta:Bacillus cereus 0.010000000
PDB:Escherichia coli-Malta:Bacillus cereus 0.170000000
Sabouraud:Escherichia coli-Malta:Bacillus cereus -0.280000000
Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus 0.313333333
Malta:Streptococcus pyogenes-Malta:Bacillus cereus -0.076666667
PDB:Streptococcus pyogenes-Malta:Bacillus cereus 0.186666667
Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus -0.216666667
Sabouraud:Bacillus cereus-PDB:Bacillus cereus -0.196666667
Czapeck:Escherichia coli-PDB:Bacillus cereus 0.213333333
Malta:Escherichia coli-PDB:Bacillus cereus 0.003333333
PDB:Escherichia coli-PDB:Bacillus cereus 0.163333333
Sabouraud:Escherichia coli-PDB:Bacillus cereus -0.286666667
Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus 0.306666667
Malta:Streptococcus pyogenes-PDB:Bacillus cereus -0.083333333
PDB:Streptococcus pyogenes-PDB:Bacillus cereus 0.180000000
Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus -0.223333333
Czapeck:Escherichia coli-Sabouraud:Bacillus cereus 0.410000000
Malta:Escherichia coli-Sabouraud:Bacillus cereus 0.200000000
PDB:Escherichia coli-Sabouraud:Bacillus cereus 0.360000000
Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus -0.090000000
Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.503333333
Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.113333333
PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.376666667
Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.026666667
Malta:Escherichia coli-Czapeck:Escherichia coli -0.210000000
PDB:Escherichia coli-Czapeck:Escherichia coli -0.050000000
Sabouraud:Escherichia coli-Czapeck:Escherichia coli -0.500000000
Czapeck:Streptococcus pyogenes-Czapeck:Escherichia coli 0.093333333
Malta:Streptococcus pyogenes-Czapeck:Escherichia coli -0.296666667
PDB:Streptococcus pyogenes-Czapeck:Escherichia coli -0.033333333
Sabouraud:Streptococcus pyogenes-Czapeck:Escherichia coli -0.436666667
PDB:Escherichia coli-Malta:Escherichia coli 0.160000000
Sabouraud:Escherichia coli-Malta:Escherichia coli -0.290000000
Czapeck:Streptococcus pyogenes-Malta:Escherichia coli 0.303333333
Malta:Streptococcus pyogenes-Malta:Escherichia coli -0.086666667
PDB:Streptococcus pyogenes-Malta:Escherichia coli 0.176666667
Sabouraud:Streptococcus pyogenes-Malta:Escherichia coli -0.226666667
Sabouraud:Escherichia coli-PDB:Escherichia coli -0.450000000
Czapeck:Streptococcus pyogenes-PDB:Escherichia coli 0.143333333
Malta:Streptococcus pyogenes-PDB:Escherichia coli -0.246666667
PDB:Streptococcus pyogenes-PDB:Escherichia coli 0.016666667
Sabouraud:Streptococcus pyogenes-PDB:Escherichia coli -0.386666667
Czapeck:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.593333333
Malta:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.203333333
PDB:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.466666667
Sabouraud:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.063333333
Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.390000000
PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.126666667
Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.530000000
PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.263333333
Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.140000000
Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes -0.403333333
lwr
Malta:Bacillus cereus-Czapeck:Bacillus cereus -0.87698924
PDB:Bacillus cereus-Czapeck:Bacillus cereus -0.87032258
Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -1.06698924
Czapeck:Escherichia coli-Czapeck:Bacillus cereus -0.65698924
Malta:Escherichia coli-Czapeck:Bacillus cereus -0.86698924
PDB:Escherichia coli-Czapeck:Bacillus cereus -0.70698924
Sabouraud:Escherichia coli-Czapeck:Bacillus cereus -1.15698924
Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.56365591
Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.95365591
PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.69032258
Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus -1.09365591
PDB:Bacillus cereus-Malta:Bacillus cereus -0.44032258
Sabouraud:Bacillus cereus-Malta:Bacillus cereus -0.63698924
Czapeck:Escherichia coli-Malta:Bacillus cereus -0.22698924
Malta:Escherichia coli-Malta:Bacillus cereus -0.43698924
PDB:Escherichia coli-Malta:Bacillus cereus -0.27698924
Sabouraud:Escherichia coli-Malta:Bacillus cereus -0.72698924
Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus -0.13365591
Malta:Streptococcus pyogenes-Malta:Bacillus cereus -0.52365591
PDB:Streptococcus pyogenes-Malta:Bacillus cereus -0.26032258
Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus -0.66365591
Sabouraud:Bacillus cereus-PDB:Bacillus cereus -0.64365591
Czapeck:Escherichia coli-PDB:Bacillus cereus -0.23365591
Malta:Escherichia coli-PDB:Bacillus cereus -0.44365591
PDB:Escherichia coli-PDB:Bacillus cereus -0.28365591
Sabouraud:Escherichia coli-PDB:Bacillus cereus -0.73365591
Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus -0.14032258
Malta:Streptococcus pyogenes-PDB:Bacillus cereus -0.53032258
PDB:Streptococcus pyogenes-PDB:Bacillus cereus -0.26698924
Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus -0.67032258
Czapeck:Escherichia coli-Sabouraud:Bacillus cereus -0.03698924
Malta:Escherichia coli-Sabouraud:Bacillus cereus -0.24698924
PDB:Escherichia coli-Sabouraud:Bacillus cereus -0.08698924
Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus -0.53698924
Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.05634409
Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.33365591
PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.07032258
Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus -0.47365591
Malta:Escherichia coli-Czapeck:Escherichia coli -0.65698924
PDB:Escherichia coli-Czapeck:Escherichia coli -0.49698924
Sabouraud:Escherichia coli-Czapeck:Escherichia coli -0.94698924
Czapeck:Streptococcus pyogenes-Czapeck:Escherichia coli -0.35365591
Malta:Streptococcus pyogenes-Czapeck:Escherichia coli -0.74365591
PDB:Streptococcus pyogenes-Czapeck:Escherichia coli -0.48032258
Sabouraud:Streptococcus pyogenes-Czapeck:Escherichia coli -0.88365591
PDB:Escherichia coli-Malta:Escherichia coli -0.28698924
Sabouraud:Escherichia coli-Malta:Escherichia coli -0.73698924
Czapeck:Streptococcus pyogenes-Malta:Escherichia coli -0.14365591
Malta:Streptococcus pyogenes-Malta:Escherichia coli -0.53365591
PDB:Streptococcus pyogenes-Malta:Escherichia coli -0.27032258
Sabouraud:Streptococcus pyogenes-Malta:Escherichia coli -0.67365591
Sabouraud:Escherichia coli-PDB:Escherichia coli -0.89698924
Czapeck:Streptococcus pyogenes-PDB:Escherichia coli -0.30365591
Malta:Streptococcus pyogenes-PDB:Escherichia coli -0.69365591
PDB:Streptococcus pyogenes-PDB:Escherichia coli -0.43032258
Sabouraud:Streptococcus pyogenes-PDB:Escherichia coli -0.83365591
Czapeck:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.14634409
Malta:Streptococcus pyogenes-Sabouraud:Escherichia coli -0.24365591
PDB:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.01967742
Sabouraud:Streptococcus pyogenes-Sabouraud:Escherichia coli -0.38365591
Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.83698924
PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.57365591
Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.97698924
PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.18365591
Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.58698924
Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes -0.85032258
upr
Malta:Bacillus cereus-Czapeck:Bacillus cereus 0.016989242
PDB:Bacillus cereus-Czapeck:Bacillus cereus 0.023655909
Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus -0.173010758
Czapeck:Escherichia coli-Czapeck:Bacillus cereus 0.236989242
Malta:Escherichia coli-Czapeck:Bacillus cereus 0.026989242
PDB:Escherichia coli-Czapeck:Bacillus cereus 0.186989242
Sabouraud:Escherichia coli-Czapeck:Bacillus cereus -0.263010758
Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.330322575
Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.059677425
PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.203655909
Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus -0.199677425
PDB:Bacillus cereus-Malta:Bacillus cereus 0.453655909
Sabouraud:Bacillus cereus-Malta:Bacillus cereus 0.256989242
Czapeck:Escherichia coli-Malta:Bacillus cereus 0.666989242
Malta:Escherichia coli-Malta:Bacillus cereus 0.456989242
PDB:Escherichia coli-Malta:Bacillus cereus 0.616989242
Sabouraud:Escherichia coli-Malta:Bacillus cereus 0.166989242
Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus 0.760322575
Malta:Streptococcus pyogenes-Malta:Bacillus cereus 0.370322575
PDB:Streptococcus pyogenes-Malta:Bacillus cereus 0.633655909
Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus 0.230322575
Sabouraud:Bacillus cereus-PDB:Bacillus cereus 0.250322575
Czapeck:Escherichia coli-PDB:Bacillus cereus 0.660322575
Malta:Escherichia coli-PDB:Bacillus cereus 0.450322575
PDB:Escherichia coli-PDB:Bacillus cereus 0.610322575
Sabouraud:Escherichia coli-PDB:Bacillus cereus 0.160322575
Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus 0.753655909
Malta:Streptococcus pyogenes-PDB:Bacillus cereus 0.363655909
PDB:Streptococcus pyogenes-PDB:Bacillus cereus 0.626989242
Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus 0.223655909
Czapeck:Escherichia coli-Sabouraud:Bacillus cereus 0.856989242
Malta:Escherichia coli-Sabouraud:Bacillus cereus 0.646989242
PDB:Escherichia coli-Sabouraud:Bacillus cereus 0.806989242
Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus 0.356989242
Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.950322575
Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.560322575
PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.823655909
Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.420322575
Malta:Escherichia coli-Czapeck:Escherichia coli 0.236989242
PDB:Escherichia coli-Czapeck:Escherichia coli 0.396989242
Sabouraud:Escherichia coli-Czapeck:Escherichia coli -0.053010758
Czapeck:Streptococcus pyogenes-Czapeck:Escherichia coli 0.540322575
Malta:Streptococcus pyogenes-Czapeck:Escherichia coli 0.150322575
PDB:Streptococcus pyogenes-Czapeck:Escherichia coli 0.413655909
Sabouraud:Streptococcus pyogenes-Czapeck:Escherichia coli 0.010322575
PDB:Escherichia coli-Malta:Escherichia coli 0.606989242
Sabouraud:Escherichia coli-Malta:Escherichia coli 0.156989242
Czapeck:Streptococcus pyogenes-Malta:Escherichia coli 0.750322575
Malta:Streptococcus pyogenes-Malta:Escherichia coli 0.360322575
PDB:Streptococcus pyogenes-Malta:Escherichia coli 0.623655909
Sabouraud:Streptococcus pyogenes-Malta:Escherichia coli 0.220322575
Sabouraud:Escherichia coli-PDB:Escherichia coli -0.003010758
Czapeck:Streptococcus pyogenes-PDB:Escherichia coli 0.590322575
Malta:Streptococcus pyogenes-PDB:Escherichia coli 0.200322575
PDB:Streptococcus pyogenes-PDB:Escherichia coli 0.463655909
Sabouraud:Streptococcus pyogenes-PDB:Escherichia coli 0.060322575
Czapeck:Streptococcus pyogenes-Sabouraud:Escherichia coli 1.040322575
Malta:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.650322575
PDB:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.913655909
Sabouraud:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.510322575
Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.056989242
PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.320322575
Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.083010758
PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.710322575
Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.306989242
Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes 0.043655909
p adj
Malta:Bacillus cereus-Czapeck:Bacillus cereus 0.0669139
PDB:Bacillus cereus-Czapeck:Bacillus cereus 0.0748539
Sabouraud:Bacillus cereus-Czapeck:Bacillus cereus 0.0019581
Czapeck:Escherichia coli-Czapeck:Bacillus cereus 0.8542136
Malta:Escherichia coli-Czapeck:Bacillus cereus 0.0791310
PDB:Escherichia coli-Czapeck:Bacillus cereus 0.6291200
Sabouraud:Escherichia coli-Czapeck:Bacillus cereus 0.0003399
Czapeck:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.9977294
Malta:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.0170675
PDB:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.7117108
Sabouraud:Streptococcus pyogenes-Czapeck:Bacillus cereus 0.0011653
PDB:Bacillus cereus-Malta:Bacillus cereus 1.0000000
Sabouraud:Bacillus cereus-Malta:Bacillus cereus 0.9163854
Czapeck:Escherichia coli-Malta:Bacillus cereus 0.8159212
Malta:Escherichia coli-Malta:Bacillus cereus 1.0000000
PDB:Escherichia coli-Malta:Bacillus cereus 0.9584769
Sabouraud:Escherichia coli-Malta:Bacillus cereus 0.5277600
Czapeck:Streptococcus pyogenes-Malta:Bacillus cereus 0.3699564
Malta:Streptococcus pyogenes-Malta:Bacillus cereus 0.9999548
PDB:Streptococcus pyogenes-Malta:Bacillus cereus 0.9247774
Sabouraud:Streptococcus pyogenes-Malta:Bacillus cereus 0.8291779
Sabouraud:Bacillus cereus-PDB:Bacillus cereus 0.8978998
Czapeck:Escherichia coli-PDB:Bacillus cereus 0.8419488
Malta:Escherichia coli-PDB:Bacillus cereus 1.0000000
PDB:Escherichia coli-PDB:Bacillus cereus 0.9683510
Sabouraud:Escherichia coli-PDB:Bacillus cereus 0.4945397
Czapeck:Streptococcus pyogenes-PDB:Bacillus cereus 0.3995344
Malta:Streptococcus pyogenes-PDB:Bacillus cereus 0.9998977
PDB:Streptococcus pyogenes-PDB:Bacillus cereus 0.9398794
Sabouraud:Streptococcus pyogenes-PDB:Bacillus cereus 0.8022018
Czapeck:Escherichia coli-Sabouraud:Bacillus cereus 0.0932885
Malta:Escherichia coli-Sabouraud:Bacillus cereus 0.8878080
PDB:Escherichia coli-Sabouraud:Bacillus cereus 0.2009823
Sabouraud:Escherichia coli-Sabouraud:Bacillus cereus 0.9997857
Czapeck:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.0181543
Malta:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.9982349
PDB:Streptococcus pyogenes-Sabouraud:Bacillus cereus 0.1573890
Sabouraud:Streptococcus pyogenes-Sabouraud:Bacillus cereus 1.0000000
Malta:Escherichia coli-Czapeck:Escherichia coli 0.8542136
PDB:Escherichia coli-Czapeck:Escherichia coli 0.9999994
Sabouraud:Escherichia coli-Czapeck:Escherichia coli 0.0193070
Czapeck:Streptococcus pyogenes-Czapeck:Escherichia coli 0.9996978
Malta:Streptococcus pyogenes-Czapeck:Escherichia coli 0.4459973
PDB:Streptococcus pyogenes-Czapeck:Escherichia coli 1.0000000
Sabouraud:Streptococcus pyogenes-Czapeck:Escherichia coli 0.0597396
PDB:Escherichia coli-Malta:Escherichia coli 0.9725910
Sabouraud:Escherichia coli-Malta:Escherichia coli 0.4781629
Czapeck:Streptococcus pyogenes-Malta:Escherichia coli 0.4147587
Malta:Streptococcus pyogenes-Malta:Escherichia coli 0.9998506
PDB:Streptococcus pyogenes-Malta:Escherichia coli 0.9466065
Sabouraud:Streptococcus pyogenes-Malta:Escherichia coli 0.7880449
Sabouraud:Escherichia coli-PDB:Escherichia coli 0.0474464
Czapeck:Streptococcus pyogenes-PDB:Escherichia coli 0.9877986
Malta:Streptococcus pyogenes-PDB:Escherichia coli 0.6955569
PDB:Streptococcus pyogenes-PDB:Escherichia coli 1.0000000
Sabouraud:Streptococcus pyogenes-PDB:Escherichia coli 0.1351371
Czapeck:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.0032843
Malta:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.8771566
PDB:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.0353583
Sabouraud:Streptococcus pyogenes-Sabouraud:Escherichia coli 0.9999934
Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.1283277
PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.9954486
Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.0110319
PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.6122292
Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.9898268
Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes 0.1039158
<img src="CMI_files/figure-html/unnamed-chunk-8-1.png" width="672" /><img src="CMI_files/figure-html/unnamed-chunk-8-2.png" width="672" /><img src="CMI_files/figure-html/unnamed-chunk-8-3.png" width="672" />
Study: ANOVA ~ “FactorA”
HSD Test for CMI
Mean Square Error: 0.02305278
FactorA, means
CMI std r se Min Max Q25 Q50 Q75
Czapeck 1.1744444 0.1815978 9 0.05061047 0.90 1.57 1.08 1.14 1.20
Malta 0.8311111 0.1101640 9 0.05061047 0.67 0.95 0.74 0.85 0.94
PDB 0.9744444 0.1738614 9 0.05061047 0.60 1.19 0.94 1.02 1.02
Sabouraud 0.6244444 0.1132598 9 0.05061047 0.46 0.76 0.55 0.58 0.75
Alpha: 0.05 ; DF Error: 24
Critical Value of Studentized Range: 3.901262
Minimun Significant Difference: 0.1974447
Treatments with the same letter are not significantly different.
CMI groups
Czapeck 1.1744444 a
PDB 0.9744444 b
Malta 0.8311111 b
Sabouraud 0.6244444 c
Study: ANOVA ~ “FactorB”
HSD Test for CMI
Mean Square Error: 0.02305278
FactorB, means
CMI std r se Min Max Q25 Q50
Bacillus cereus 0.9150000 0.2898432 12 0.04382995 0.55 1.57 0.6775 0.945
Escherichia coli 0.8833333 0.2370398 12 0.04382995 0.46 1.19 0.7800 0.880
Streptococcus pyogenes 0.9050000 0.2356230 12 0.04382995 0.58 1.28 0.7300 0.915
Q75
Bacillus cereus 1.035
Escherichia coli 1.050
Streptococcus pyogenes 1.095
Alpha: 0.05 ; DF Error: 24
Critical Value of Studentized Range: 3.531697
Minimun Significant Difference: 0.1547941
Treatments with the same letter are not significantly different.
CMI groups
Bacillus cereus 0.9150000 a
Streptococcus pyogenes 0.9050000 a
Escherichia coli 0.8833333 a
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