DF
Valentina Vallejo
2025-04-21
R Markdown
Problema a analizar: Actividad antimicrobiana sobre las bacterias E.coli, Proteus mirabilis, Enterobacter cloacae
Including Plots
Cálculo de ANOVA y el Modelo Lineal
## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.7205 0.5735 28.271 4.77e-08 ***
## FactorB 2 0.1120 0.0560 2.761 0.0834 .
## FactorA:FactorB 6 0.0726 0.0121 0.597 0.7299
## Residuals 24 0.4869 0.0203
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.7205 0.5735 28.271 4.77e-08 ***
## FactorB 2 0.1120 0.0560 2.761 0.0834 .
## FactorA:FactorB 6 0.0726 0.0121 0.597 0.7299
## Residuals 24 0.4869 0.0203
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Call:
## lm(formula = CMI ~ (FactorA + FactorB + FactorA:FactorB))
##
## Residuals:
## Min 1Q Median 3Q Max
## -0.22667 -0.07417 -0.01500 0.07750 0.24667
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 0.993333 0.082232 12.080 1.09e-11
## FactorAMalta -0.283333 0.116293 -2.436 0.022628
## FactorAPDB -0.020000 0.116293 -0.172 0.864896
## FactorASabouraud -0.506667 0.116293 -4.357 0.000213
## FactorBEscherichia coli 0.080000 0.116293 0.688 0.498100
## FactorBProteus mirabilis 0.280000 0.116293 2.408 0.024099
## FactorAMalta:FactorBEscherichia coli 0.073333 0.164463 0.446 0.659670
## FactorAPDB:FactorBEscherichia coli -0.030000 0.164463 -0.182 0.856792
## FactorASabouraud:FactorBEscherichia coli 0.006667 0.164463 0.041 0.968001
## FactorAMalta:FactorBProteus mirabilis -0.143333 0.164463 -0.872 0.392104
## FactorAPDB:FactorBProteus mirabilis -0.233333 0.164463 -1.419 0.168827
## FactorASabouraud:FactorBProteus mirabilis -0.210000 0.164463 -1.277 0.213861
##
## (Intercept) ***
## FactorAMalta *
## FactorAPDB
## FactorASabouraud ***
## FactorBEscherichia coli
## FactorBProteus mirabilis *
## FactorAMalta:FactorBEscherichia coli
## FactorAPDB:FactorBEscherichia coli
## FactorASabouraud:FactorBEscherichia coli
## FactorAMalta:FactorBProteus mirabilis
## FactorAPDB:FactorBProteus mirabilis
## FactorASabouraud:FactorBProteus mirabilis
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 0.1424 on 24 degrees of freedom
## Multiple R-squared: 0.7965, Adjusted R-squared: 0.7032
## F-statistic: 8.538 on 11 and 24 DF, p-value: 6.785e-06sIGNIFICADO DE LA INTERACCIÓN: interacción entre ambos factores representan el hecho de que el efecto de un determinado nivel de un factor sea diferente para cada nivel del otro factor.
Gráficas de efectos principales e interacciones
## Warning: package 'car' was built under R version 4.4.2## Cargando paquete requerido: carData## Warning: package 'carData' was built under R version 4.4.2## Warning: package 'phia' was built under R version 4.4.3
Supuestos del Diseño Experimental
- Normalidad
##
## Shapiro-Wilk normality test
##
## data: rstandard(Modelo)
## W = 0.97932, p-value = 0.7223- Prueba de homocedasticidad o igualdad de varianzas
## Non-constant Variance Score Test
## Variance formula: ~ fitted.values
## Chisquare = 0.3231472, Df = 1, p = 0.56972- Revisión grafica de supuestos
- cálculo del efecto (ANOVA)
## Warning: package 'lsr' was built under R version 4.4.3## eta.sq eta.sq.part
## FactorA 0.71927445 0.7794400
## FactorB 0.04682398 0.1870275
## FactorA:FactorB 0.03036672 0.1298269Pruebas aposteriori(Comparaciones multiples de medias)
library(agricolae)## Warning: package 'agricolae' was built under R version 4.4.2TukeyHSD(ANOVA)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = Modelo)
##
## $FactorA
## diff lwr upr p adj
## Malta-Czapeck -0.3066667 -0.49188470 -0.12144864 0.0006766
## PDB-Czapeck -0.1077778 -0.29299581 0.07744025 0.3946894
## Sabouraud-Czapeck -0.5744444 -0.75966247 -0.38922642 0.0000001
## PDB-Malta 0.1988889 0.01367086 0.38410692 0.0321057
## Sabouraud-Malta -0.2677778 -0.45299581 -0.08255975 0.0028522
## Sabouraud-PDB -0.4666667 -0.65188470 -0.28144864 0.0000020
##
## $FactorB
## diff lwr upr
## Escherichia coli-Enterobacter cloacae 0.09250000 -0.05270857 0.2377086
## Proteus mirabilis-Enterobacter cloacae 0.13333333 -0.01187524 0.2785419
## Proteus mirabilis-Escherichia coli 0.04083333 -0.10437524 0.1860419
## p adj
## Escherichia coli-Enterobacter cloacae 0.2688425
## Proteus mirabilis-Enterobacter cloacae 0.0761288
## Proteus mirabilis-Escherichia coli 0.7644766
##
## $`FactorA:FactorB`
## diff
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.283333333
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.020000000
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.506666667
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae 0.080000000
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae -0.130000000
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae 0.030000000
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae -0.420000000
## Czapeck:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.280000000
## Malta:Proteus mirabilis-Czapeck:Enterobacter cloacae -0.146666667
## PDB:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.026666667
## Sabouraud:Proteus mirabilis-Czapeck:Enterobacter cloacae -0.436666667
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae 0.263333333
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae -0.223333333
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae 0.363333333
## Malta:Escherichia coli-Malta:Enterobacter cloacae 0.153333333
## PDB:Escherichia coli-Malta:Enterobacter cloacae 0.313333333
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae -0.136666667
## Czapeck:Proteus mirabilis-Malta:Enterobacter cloacae 0.563333333
## Malta:Proteus mirabilis-Malta:Enterobacter cloacae 0.136666667
## PDB:Proteus mirabilis-Malta:Enterobacter cloacae 0.310000000
## Sabouraud:Proteus mirabilis-Malta:Enterobacter cloacae -0.153333333
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae -0.486666667
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae 0.100000000
## Malta:Escherichia coli-PDB:Enterobacter cloacae -0.110000000
## PDB:Escherichia coli-PDB:Enterobacter cloacae 0.050000000
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae -0.400000000
## Czapeck:Proteus mirabilis-PDB:Enterobacter cloacae 0.300000000
## Malta:Proteus mirabilis-PDB:Enterobacter cloacae -0.126666667
## PDB:Proteus mirabilis-PDB:Enterobacter cloacae 0.046666667
## Sabouraud:Proteus mirabilis-PDB:Enterobacter cloacae -0.416666667
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 0.586666667
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae 0.376666667
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae 0.536666667
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae 0.086666667
## Czapeck:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.786666667
## Malta:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.360000000
## PDB:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.533333333
## Sabouraud:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.070000000
## Malta:Escherichia coli-Czapeck:Escherichia coli -0.210000000
## PDB:Escherichia coli-Czapeck:Escherichia coli -0.050000000
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli -0.500000000
## Czapeck:Proteus mirabilis-Czapeck:Escherichia coli 0.200000000
## Malta:Proteus mirabilis-Czapeck:Escherichia coli -0.226666667
## PDB:Proteus mirabilis-Czapeck:Escherichia coli -0.053333333
## Sabouraud:Proteus mirabilis-Czapeck:Escherichia coli -0.516666667
## PDB:Escherichia coli-Malta:Escherichia coli 0.160000000
## Sabouraud:Escherichia coli-Malta:Escherichia coli -0.290000000
## Czapeck:Proteus mirabilis-Malta:Escherichia coli 0.410000000
## Malta:Proteus mirabilis-Malta:Escherichia coli -0.016666667
## PDB:Proteus mirabilis-Malta:Escherichia coli 0.156666667
## Sabouraud:Proteus mirabilis-Malta:Escherichia coli -0.306666667
## Sabouraud:Escherichia coli-PDB:Escherichia coli -0.450000000
## Czapeck:Proteus mirabilis-PDB:Escherichia coli 0.250000000
## Malta:Proteus mirabilis-PDB:Escherichia coli -0.176666667
## PDB:Proteus mirabilis-PDB:Escherichia coli -0.003333333
## Sabouraud:Proteus mirabilis-PDB:Escherichia coli -0.466666667
## Czapeck:Proteus mirabilis-Sabouraud:Escherichia coli 0.700000000
## Malta:Proteus mirabilis-Sabouraud:Escherichia coli 0.273333333
## PDB:Proteus mirabilis-Sabouraud:Escherichia coli 0.446666667
## Sabouraud:Proteus mirabilis-Sabouraud:Escherichia coli -0.016666667
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.426666667
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis -0.253333333
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -0.716666667
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.173333333
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis -0.290000000
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.463333333
## lwr
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.702642965
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.439309632
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.925976299
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae -0.339309632
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae -0.549309632
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae -0.389309632
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae -0.839309632
## Czapeck:Proteus mirabilis-Czapeck:Enterobacter cloacae -0.139309632
## Malta:Proteus mirabilis-Czapeck:Enterobacter cloacae -0.565976299
## PDB:Proteus mirabilis-Czapeck:Enterobacter cloacae -0.392642965
## Sabouraud:Proteus mirabilis-Czapeck:Enterobacter cloacae -0.855976299
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae -0.155976299
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae -0.642642965
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae -0.055976299
## Malta:Escherichia coli-Malta:Enterobacter cloacae -0.265976299
## PDB:Escherichia coli-Malta:Enterobacter cloacae -0.105976299
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae -0.555976299
## Czapeck:Proteus mirabilis-Malta:Enterobacter cloacae 0.144023701
## Malta:Proteus mirabilis-Malta:Enterobacter cloacae -0.282642965
## PDB:Proteus mirabilis-Malta:Enterobacter cloacae -0.109309632
## Sabouraud:Proteus mirabilis-Malta:Enterobacter cloacae -0.572642965
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae -0.905976299
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae -0.319309632
## Malta:Escherichia coli-PDB:Enterobacter cloacae -0.529309632
## PDB:Escherichia coli-PDB:Enterobacter cloacae -0.369309632
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae -0.819309632
## Czapeck:Proteus mirabilis-PDB:Enterobacter cloacae -0.119309632
## Malta:Proteus mirabilis-PDB:Enterobacter cloacae -0.545976299
## PDB:Proteus mirabilis-PDB:Enterobacter cloacae -0.372642965
## Sabouraud:Proteus mirabilis-PDB:Enterobacter cloacae -0.835976299
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 0.167357035
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae -0.042642965
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae 0.117357035
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae -0.332642965
## Czapeck:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.367357035
## Malta:Proteus mirabilis-Sabouraud:Enterobacter cloacae -0.059309632
## PDB:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.114023701
## Sabouraud:Proteus mirabilis-Sabouraud:Enterobacter cloacae -0.349309632
## Malta:Escherichia coli-Czapeck:Escherichia coli -0.629309632
## PDB:Escherichia coli-Czapeck:Escherichia coli -0.469309632
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli -0.919309632
## Czapeck:Proteus mirabilis-Czapeck:Escherichia coli -0.219309632
## Malta:Proteus mirabilis-Czapeck:Escherichia coli -0.645976299
## PDB:Proteus mirabilis-Czapeck:Escherichia coli -0.472642965
## Sabouraud:Proteus mirabilis-Czapeck:Escherichia coli -0.935976299
## PDB:Escherichia coli-Malta:Escherichia coli -0.259309632
## Sabouraud:Escherichia coli-Malta:Escherichia coli -0.709309632
## Czapeck:Proteus mirabilis-Malta:Escherichia coli -0.009309632
## Malta:Proteus mirabilis-Malta:Escherichia coli -0.435976299
## PDB:Proteus mirabilis-Malta:Escherichia coli -0.262642965
## Sabouraud:Proteus mirabilis-Malta:Escherichia coli -0.725976299
## Sabouraud:Escherichia coli-PDB:Escherichia coli -0.869309632
## Czapeck:Proteus mirabilis-PDB:Escherichia coli -0.169309632
## Malta:Proteus mirabilis-PDB:Escherichia coli -0.595976299
## PDB:Proteus mirabilis-PDB:Escherichia coli -0.422642965
## Sabouraud:Proteus mirabilis-PDB:Escherichia coli -0.885976299
## Czapeck:Proteus mirabilis-Sabouraud:Escherichia coli 0.280690368
## Malta:Proteus mirabilis-Sabouraud:Escherichia coli -0.145976299
## PDB:Proteus mirabilis-Sabouraud:Escherichia coli 0.027357035
## Sabouraud:Proteus mirabilis-Sabouraud:Escherichia coli -0.435976299
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.845976299
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis -0.672642965
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -1.135976299
## PDB:Proteus mirabilis-Malta:Proteus mirabilis -0.245976299
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis -0.709309632
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.882642965
## upr
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.1359762986
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.3993096319
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae -0.0873570347
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae 0.4993096319
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae 0.2893096319
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae 0.4493096319
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae -0.0006903681
## Czapeck:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.6993096319
## Malta:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.2726429653
## PDB:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.4459762986
## Sabouraud:Proteus mirabilis-Czapeck:Enterobacter cloacae -0.0173570347
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae 0.6826429653
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae 0.1959762986
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae 0.7826429653
## Malta:Escherichia coli-Malta:Enterobacter cloacae 0.5726429653
## PDB:Escherichia coli-Malta:Enterobacter cloacae 0.7326429653
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae 0.2826429653
## Czapeck:Proteus mirabilis-Malta:Enterobacter cloacae 0.9826429653
## Malta:Proteus mirabilis-Malta:Enterobacter cloacae 0.5559762986
## PDB:Proteus mirabilis-Malta:Enterobacter cloacae 0.7293096319
## Sabouraud:Proteus mirabilis-Malta:Enterobacter cloacae 0.2659762986
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae -0.0673570347
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae 0.5193096319
## Malta:Escherichia coli-PDB:Enterobacter cloacae 0.3093096319
## PDB:Escherichia coli-PDB:Enterobacter cloacae 0.4693096319
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae 0.0193096319
## Czapeck:Proteus mirabilis-PDB:Enterobacter cloacae 0.7193096319
## Malta:Proteus mirabilis-PDB:Enterobacter cloacae 0.2926429653
## PDB:Proteus mirabilis-PDB:Enterobacter cloacae 0.4659762986
## Sabouraud:Proteus mirabilis-PDB:Enterobacter cloacae 0.0026429653
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 1.0059762986
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae 0.7959762986
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae 0.9559762986
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae 0.5059762986
## Czapeck:Proteus mirabilis-Sabouraud:Enterobacter cloacae 1.2059762986
## Malta:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.7793096319
## PDB:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.9526429653
## Sabouraud:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.4893096319
## Malta:Escherichia coli-Czapeck:Escherichia coli 0.2093096319
## PDB:Escherichia coli-Czapeck:Escherichia coli 0.3693096319
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli -0.0806903681
## Czapeck:Proteus mirabilis-Czapeck:Escherichia coli 0.6193096319
## Malta:Proteus mirabilis-Czapeck:Escherichia coli 0.1926429653
## PDB:Proteus mirabilis-Czapeck:Escherichia coli 0.3659762986
## Sabouraud:Proteus mirabilis-Czapeck:Escherichia coli -0.0973570347
## PDB:Escherichia coli-Malta:Escherichia coli 0.5793096319
## Sabouraud:Escherichia coli-Malta:Escherichia coli 0.1293096319
## Czapeck:Proteus mirabilis-Malta:Escherichia coli 0.8293096319
## Malta:Proteus mirabilis-Malta:Escherichia coli 0.4026429653
## PDB:Proteus mirabilis-Malta:Escherichia coli 0.5759762986
## Sabouraud:Proteus mirabilis-Malta:Escherichia coli 0.1126429653
## Sabouraud:Escherichia coli-PDB:Escherichia coli -0.0306903681
## Czapeck:Proteus mirabilis-PDB:Escherichia coli 0.6693096319
## Malta:Proteus mirabilis-PDB:Escherichia coli 0.2426429653
## PDB:Proteus mirabilis-PDB:Escherichia coli 0.4159762986
## Sabouraud:Proteus mirabilis-PDB:Escherichia coli -0.0473570347
## Czapeck:Proteus mirabilis-Sabouraud:Escherichia coli 1.1193096319
## Malta:Proteus mirabilis-Sabouraud:Escherichia coli 0.6926429653
## PDB:Proteus mirabilis-Sabouraud:Escherichia coli 0.8659762986
## Sabouraud:Proteus mirabilis-Sabouraud:Escherichia coli 0.4026429653
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.0073570347
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis 0.1659762986
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -0.2973570347
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.5926429653
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis 0.1293096319
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.0440237014
## p adj
## Malta:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.4207538
## PDB:Enterobacter cloacae-Czapeck:Enterobacter cloacae 1.0000000
## Sabouraud:Enterobacter cloacae-Czapeck:Enterobacter cloacae 0.0091123
## Czapeck:Escherichia coli-Czapeck:Enterobacter cloacae 0.9998720
## Malta:Escherichia coli-Czapeck:Enterobacter cloacae 0.9906049
## PDB:Escherichia coli-Czapeck:Enterobacter cloacae 1.0000000
## Sabouraud:Escherichia coli-Czapeck:Enterobacter cloacae 0.0493644
## Czapeck:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.4373856
## Malta:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.9767388
## PDB:Proteus mirabilis-Czapeck:Enterobacter cloacae 1.0000000
## Sabouraud:Proteus mirabilis-Czapeck:Enterobacter cloacae 0.0361061
## PDB:Enterobacter cloacae-Malta:Enterobacter cloacae 0.5241641
## Sabouraud:Enterobacter cloacae-Malta:Enterobacter cloacae 0.7366641
## Czapeck:Escherichia coli-Malta:Enterobacter cloacae 0.1337837
## Malta:Escherichia coli-Malta:Enterobacter cloacae 0.9681875
## PDB:Escherichia coli-Malta:Enterobacter cloacae 0.2864782
## Sabouraud:Escherichia coli-Malta:Enterobacter cloacae 0.9861853
## Czapeck:Proteus mirabilis-Malta:Enterobacter cloacae 0.0028577
## Malta:Proteus mirabilis-Malta:Enterobacter cloacae 0.9861853
## PDB:Proteus mirabilis-Malta:Enterobacter cloacae 0.2998722
## Sabouraud:Proteus mirabilis-Malta:Enterobacter cloacae 0.9681875
## Sabouraud:Enterobacter cloacae-PDB:Enterobacter cloacae 0.0136164
## Czapeck:Escherichia coli-PDB:Enterobacter cloacae 0.9989741
## Malta:Escherichia coli-PDB:Enterobacter cloacae 0.9976277
## PDB:Escherichia coli-PDB:Enterobacter cloacae 0.9999989
## Sabouraud:Escherichia coli-PDB:Enterobacter cloacae 0.0710965
## Czapeck:Proteus mirabilis-PDB:Enterobacter cloacae 0.3424425
## Malta:Proteus mirabilis-PDB:Enterobacter cloacae 0.9923491
## PDB:Proteus mirabilis-PDB:Enterobacter cloacae 0.9999995
## Sabouraud:Proteus mirabilis-PDB:Enterobacter cloacae 0.0525032
## Czapeck:Escherichia coli-Sabouraud:Enterobacter cloacae 0.0017631
## Malta:Escherichia coli-Sabouraud:Enterobacter cloacae 0.1069624
## PDB:Escherichia coli-Sabouraud:Enterobacter cloacae 0.0049471
## Sabouraud:Escherichia coli-Sabouraud:Enterobacter cloacae 0.9997254
## Czapeck:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.0000291
## Malta:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.1413089
## PDB:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.0052966
## Sabouraud:Proteus mirabilis-Sabouraud:Enterobacter cloacae 0.9999654
## Malta:Escherichia coli-Czapeck:Escherichia coli 0.7999826
## PDB:Escherichia coli-Czapeck:Escherichia coli 0.9999989
## Sabouraud:Escherichia coli-Czapeck:Escherichia coli 0.0104237
## Czapeck:Proteus mirabilis-Czapeck:Escherichia coli 0.8424400
## Malta:Proteus mirabilis-Czapeck:Escherichia coli 0.7198731
## PDB:Proteus mirabilis-Czapeck:Escherichia coli 0.9999978
## Sabouraud:Proteus mirabilis-Czapeck:Escherichia coli 0.0074409
## PDB:Escherichia coli-Malta:Escherichia coli 0.9575555
## Sabouraud:Escherichia coli-Malta:Escherichia coli 0.3884057
## Czapeck:Proteus mirabilis-Malta:Escherichia coli 0.0593338
## Malta:Proteus mirabilis-Malta:Escherichia coli 1.0000000
## PDB:Proteus mirabilis-Malta:Escherichia coli 0.9631451
## Sabouraud:Proteus mirabilis-Malta:Escherichia coli 0.3136687
## Sabouraud:Escherichia coli-PDB:Escherichia coli 0.0279749
## Czapeck:Proteus mirabilis-PDB:Escherichia coli 0.5961257
## Malta:Proteus mirabilis-PDB:Escherichia coli 0.9206633
## PDB:Proteus mirabilis-PDB:Escherichia coli 1.0000000
## Sabouraud:Proteus mirabilis-PDB:Escherichia coli 0.0202273
## Czapeck:Proteus mirabilis-Sabouraud:Escherichia coli 0.0001687
## Malta:Proteus mirabilis-Sabouraud:Escherichia coli 0.4714527
## PDB:Proteus mirabilis-Sabouraud:Escherichia coli 0.0298288
## Sabouraud:Proteus mirabilis-Sabouraud:Escherichia coli 1.0000000
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis 0.0435977
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis 0.5780611
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis 0.0001199
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.9292879
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis 0.3884057
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis 0.0215920plot(TukeyHSD(ANOVA))
#Prueba de Tukey
outHSD<-HSD.test(ANOVA, "FactorA",console=TRUE)##
## Study: ANOVA ~ "FactorA"
##
## HSD Test for CMI
##
## Mean Square Error: 0.02028611
##
## FactorA, means
##
## CMI std r se Min Max Q25 Q50 Q75
## Czapeck 1.1133333 0.1864135 9 0.04747644 0.81 1.35 0.93 1.18 1.24
## Malta 0.8066667 0.1351851 9 0.04747644 0.62 1.00 0.73 0.79 0.92
## PDB 1.0055556 0.1373054 9 0.04747644 0.84 1.19 0.89 1.02 1.10
## Sabouraud 0.5388889 0.1098231 9 0.04747644 0.41 0.75 0.46 0.51 0.62
##
## Alpha: 0.05 ; DF Error: 24
## Critical Value of Studentized Range: 3.901262
##
## Minimun Significant Difference: 0.185218
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Czapeck 1.1133333 a
## PDB 1.0055556 a
## Malta 0.8066667 b
## Sabouraud 0.5388889 coutHSD<-HSD.test(ANOVA, "FactorB",console=TRUE)##
## Study: ANOVA ~ "FactorB"
##
## HSD Test for CMI
##
## Mean Square Error: 0.02028611
##
## FactorB, means
##
## CMI std r se Min Max Q25 Q50
## Enterobacter cloacae 0.7908333 0.2561412 12 0.0411158 0.41 1.24 0.6275 0.79
## Escherichia coli 0.8833333 0.2370398 12 0.0411158 0.46 1.19 0.7800 0.88
## Proteus mirabilis 0.9241667 0.2923714 12 0.0411158 0.50 1.35 0.6275 0.96
## Q75
## Enterobacter cloacae 0.9075
## Escherichia coli 1.0500
## Proteus mirabilis 1.1325
##
## Alpha: 0.05 ; DF Error: 24
## Critical Value of Studentized Range: 3.531697
##
## Minimun Significant Difference: 0.1452086
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Proteus mirabilis 0.9241667 a
## Escherichia coli 0.8833333 a
## Enterobacter cloacae 0.7908333 a