Diseño factorial (DF)
Silvia Berbeo
2025-04-20
R Markdown
Problema a analizar: Actividad antimicrobiana sobre las bacterias Streptococcus pyogenes, Proteus mirabilis y Micrococcus luteus.
Including Plots
Cálculo de ANOVA y el Modelo Lineal
## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.8125 0.6042 34.895 6.49e-09 ***
## FactorB 2 0.0027 0.0014 0.078 0.925
## FactorA:FactorB 6 0.0696 0.0116 0.670 0.675
## Residuals 24 0.4155 0.0173
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1## Df Sum Sq Mean Sq F value Pr(>F)
## FactorA 3 1.8125 0.6042 34.895 6.49e-09 ***
## FactorB 2 0.0027 0.0014 0.078 0.925
## FactorA:FactorB 6 0.0696 0.0116 0.670 0.675
## Residuals 24 0.4155 0.0173
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1##
## Call:
## lm(formula = CMI ~ (FactorA + FactorB + FactorA:FactorB))
##
## Residuals:
## Min 1Q Median 3Q Max
## -0.22667 -0.06167 -0.02333 0.07750 0.25667
##
## Coefficients:
## Estimate Std. Error t value
## (Intercept) 1.10333 0.07597 14.523
## FactorAMalta -0.25333 0.10744 -2.358
## FactorAPDB -0.01333 0.10744 -0.124
## FactorASabouraud -0.52000 0.10744 -4.840
## FactorBProteus mirabilis 0.17000 0.10744 1.582
## FactorBStreptococcus pyogenes 0.06333 0.10744 0.589
## FactorAMalta:FactorBProteus mirabilis -0.17333 0.15194 -1.141
## FactorAPDB:FactorBProteus mirabilis -0.24000 0.15194 -1.580
## FactorASabouraud:FactorBProteus mirabilis -0.19667 0.15194 -1.294
## FactorAMalta:FactorBStreptococcus pyogenes -0.13667 0.15194 -0.899
## FactorAPDB:FactorBStreptococcus pyogenes -0.11333 0.15194 -0.746
## FactorASabouraud:FactorBStreptococcus pyogenes -0.01000 0.15194 -0.066
## Pr(>|t|)
## (Intercept) 2.19e-13 ***
## FactorAMalta 0.0269 *
## FactorAPDB 0.9023
## FactorASabouraud 6.24e-05 ***
## FactorBProteus mirabilis 0.1267
## FactorBStreptococcus pyogenes 0.5610
## FactorAMalta:FactorBProteus mirabilis 0.2652
## FactorAPDB:FactorBProteus mirabilis 0.1273
## FactorASabouraud:FactorBProteus mirabilis 0.2078
## FactorAMalta:FactorBStreptococcus pyogenes 0.3773
## FactorAPDB:FactorBStreptococcus pyogenes 0.4630
## FactorASabouraud:FactorBStreptococcus pyogenes 0.9481
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 0.1316 on 24 degrees of freedom
## Multiple R-squared: 0.8194, Adjusted R-squared: 0.7366
## F-statistic: 9.897 on 11 and 24 DF, p-value: 1.818e-06sIGNIFICADO DE LA INTERACCIÓN: interacción entre ambos factores representan el hecho de que el efecto de un determinado nivel de un factor sea diferente para cada nivel del otro factor.
Gráficas de efectos principales e interacciones
## Warning: package 'car' was built under R version 4.4.2## Loading required package: carData## Warning: package 'carData' was built under R version 4.4.2## Warning: package 'phia' was built under R version 4.4.3
Supuestos del Diseño Experimental
- Normalidad
##
## Shapiro-Wilk normality test
##
## data: rstandard(Modelo)
## W = 0.97784, p-value = 0.6719- Prueba de homocedasticidad o igualdad de varianzas
## Non-constant Variance Score Test
## Variance formula: ~ fitted.values
## Chisquare = 1.566175, Df = 1, p = 0.21076- Revisión grafica de supuestos
- cálculo del efecto (ANOVA)
## Warning: package 'lsr' was built under R version 4.4.3## eta.sq eta.sq.part
## FactorA 0.787917612 0.813497471
## FactorB 0.001176142 0.006468924
## FactorA:FactorB 0.030268158 0.143514755Pruebas aposteriori(Comparaciones multiples de medias)
library(agricolae)## Warning: package 'agricolae' was built under R version 4.4.2TukeyHSD(ANOVA)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = Modelo)
##
## $FactorA
## diff lwr upr p adj
## Malta-Czapeck -0.3566667 -0.52777894 -0.18555439 0.0000355
## PDB-Czapeck -0.1311111 -0.30222339 0.04000117 0.1774032
## Sabouraud-Czapeck -0.5888889 -0.76000117 -0.41777661 0.0000000
## PDB-Malta 0.2255556 0.05444328 0.39666783 0.0067169
## Sabouraud-Malta -0.2322222 -0.40333450 -0.06110994 0.0051817
## Sabouraud-PDB -0.4577778 -0.62889006 -0.28666550 0.0000007
##
## $FactorB
## diff lwr upr
## Proteus mirabilis-Micrococcus luteus 0.017500000 -0.1166498 0.1516498
## Streptococcus pyogenes-Micrococcus luteus -0.001666667 -0.1358165 0.1324832
## Streptococcus pyogenes-Proteus mirabilis -0.019166667 -0.1533165 0.1149832
## p adj
## Proteus mirabilis-Micrococcus luteus 0.9433145
## Streptococcus pyogenes-Micrococcus luteus 0.9994694
## Streptococcus pyogenes-Proteus mirabilis 0.9324283
##
## $`FactorA:FactorB`
## diff
## Malta:Micrococcus luteus-Czapeck:Micrococcus luteus -0.253333333
## PDB:Micrococcus luteus-Czapeck:Micrococcus luteus -0.013333333
## Sabouraud:Micrococcus luteus-Czapeck:Micrococcus luteus -0.520000000
## Czapeck:Proteus mirabilis-Czapeck:Micrococcus luteus 0.170000000
## Malta:Proteus mirabilis-Czapeck:Micrococcus luteus -0.256666667
## PDB:Proteus mirabilis-Czapeck:Micrococcus luteus -0.083333333
## Sabouraud:Proteus mirabilis-Czapeck:Micrococcus luteus -0.546666667
## Czapeck:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.063333333
## Malta:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.326666667
## PDB:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.063333333
## Sabouraud:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.466666667
## PDB:Micrococcus luteus-Malta:Micrococcus luteus 0.240000000
## Sabouraud:Micrococcus luteus-Malta:Micrococcus luteus -0.266666667
## Czapeck:Proteus mirabilis-Malta:Micrococcus luteus 0.423333333
## Malta:Proteus mirabilis-Malta:Micrococcus luteus -0.003333333
## PDB:Proteus mirabilis-Malta:Micrococcus luteus 0.170000000
## Sabouraud:Proteus mirabilis-Malta:Micrococcus luteus -0.293333333
## Czapeck:Streptococcus pyogenes-Malta:Micrococcus luteus 0.316666667
## Malta:Streptococcus pyogenes-Malta:Micrococcus luteus -0.073333333
## PDB:Streptococcus pyogenes-Malta:Micrococcus luteus 0.190000000
## Sabouraud:Streptococcus pyogenes-Malta:Micrococcus luteus -0.213333333
## Sabouraud:Micrococcus luteus-PDB:Micrococcus luteus -0.506666667
## Czapeck:Proteus mirabilis-PDB:Micrococcus luteus 0.183333333
## Malta:Proteus mirabilis-PDB:Micrococcus luteus -0.243333333
## PDB:Proteus mirabilis-PDB:Micrococcus luteus -0.070000000
## Sabouraud:Proteus mirabilis-PDB:Micrococcus luteus -0.533333333
## Czapeck:Streptococcus pyogenes-PDB:Micrococcus luteus 0.076666667
## Malta:Streptococcus pyogenes-PDB:Micrococcus luteus -0.313333333
## PDB:Streptococcus pyogenes-PDB:Micrococcus luteus -0.050000000
## Sabouraud:Streptococcus pyogenes-PDB:Micrococcus luteus -0.453333333
## Czapeck:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.690000000
## Malta:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.263333333
## PDB:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.436666667
## Sabouraud:Proteus mirabilis-Sabouraud:Micrococcus luteus -0.026666667
## Czapeck:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.583333333
## Malta:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.193333333
## PDB:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.456666667
## Sabouraud:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.053333333
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.426666667
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis -0.253333333
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -0.716666667
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.106666667
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.496666667
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.233333333
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.636666667
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.173333333
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis -0.290000000
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis 0.320000000
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis -0.070000000
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis 0.193333333
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis -0.210000000
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.463333333
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis 0.146666667
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis -0.243333333
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis 0.020000000
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis -0.383333333
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.610000000
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.220000000
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.483333333
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.080000000
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.390000000
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.126666667
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.530000000
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.263333333
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.140000000
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes -0.403333333
## lwr
## Malta:Micrococcus luteus-Czapeck:Micrococcus luteus -0.64070937
## PDB:Micrococcus luteus-Czapeck:Micrococcus luteus -0.40070937
## Sabouraud:Micrococcus luteus-Czapeck:Micrococcus luteus -0.90737604
## Czapeck:Proteus mirabilis-Czapeck:Micrococcus luteus -0.21737604
## Malta:Proteus mirabilis-Czapeck:Micrococcus luteus -0.64404270
## PDB:Proteus mirabilis-Czapeck:Micrococcus luteus -0.47070937
## Sabouraud:Proteus mirabilis-Czapeck:Micrococcus luteus -0.93404270
## Czapeck:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.32404270
## Malta:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.71404270
## PDB:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.45070937
## Sabouraud:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.85404270
## PDB:Micrococcus luteus-Malta:Micrococcus luteus -0.14737604
## Sabouraud:Micrococcus luteus-Malta:Micrococcus luteus -0.65404270
## Czapeck:Proteus mirabilis-Malta:Micrococcus luteus 0.03595730
## Malta:Proteus mirabilis-Malta:Micrococcus luteus -0.39070937
## PDB:Proteus mirabilis-Malta:Micrococcus luteus -0.21737604
## Sabouraud:Proteus mirabilis-Malta:Micrococcus luteus -0.68070937
## Czapeck:Streptococcus pyogenes-Malta:Micrococcus luteus -0.07070937
## Malta:Streptococcus pyogenes-Malta:Micrococcus luteus -0.46070937
## PDB:Streptococcus pyogenes-Malta:Micrococcus luteus -0.19737604
## Sabouraud:Streptococcus pyogenes-Malta:Micrococcus luteus -0.60070937
## Sabouraud:Micrococcus luteus-PDB:Micrococcus luteus -0.89404270
## Czapeck:Proteus mirabilis-PDB:Micrococcus luteus -0.20404270
## Malta:Proteus mirabilis-PDB:Micrococcus luteus -0.63070937
## PDB:Proteus mirabilis-PDB:Micrococcus luteus -0.45737604
## Sabouraud:Proteus mirabilis-PDB:Micrococcus luteus -0.92070937
## Czapeck:Streptococcus pyogenes-PDB:Micrococcus luteus -0.31070937
## Malta:Streptococcus pyogenes-PDB:Micrococcus luteus -0.70070937
## PDB:Streptococcus pyogenes-PDB:Micrococcus luteus -0.43737604
## Sabouraud:Streptococcus pyogenes-PDB:Micrococcus luteus -0.84070937
## Czapeck:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.30262396
## Malta:Proteus mirabilis-Sabouraud:Micrococcus luteus -0.12404270
## PDB:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.04929063
## Sabouraud:Proteus mirabilis-Sabouraud:Micrococcus luteus -0.41404270
## Czapeck:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.19595730
## Malta:Streptococcus pyogenes-Sabouraud:Micrococcus luteus -0.19404270
## PDB:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.06929063
## Sabouraud:Streptococcus pyogenes-Sabouraud:Micrococcus luteus -0.33404270
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.81404270
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis -0.64070937
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -1.10404270
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.49404270
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.88404270
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.62070937
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis -1.02404270
## PDB:Proteus mirabilis-Malta:Proteus mirabilis -0.21404270
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis -0.67737604
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis -0.06737604
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis -0.45737604
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis -0.19404270
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis -0.59737604
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.85070937
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis -0.24070937
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis -0.63070937
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis -0.36737604
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis -0.77070937
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.22262396
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis -0.16737604
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.09595730
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis -0.30737604
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.77737604
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.51404270
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.91737604
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.12404270
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes -0.52737604
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes -0.79070937
## upr
## Malta:Micrococcus luteus-Czapeck:Micrococcus luteus 0.134042704
## PDB:Micrococcus luteus-Czapeck:Micrococcus luteus 0.374042704
## Sabouraud:Micrococcus luteus-Czapeck:Micrococcus luteus -0.132623963
## Czapeck:Proteus mirabilis-Czapeck:Micrococcus luteus 0.557376037
## Malta:Proteus mirabilis-Czapeck:Micrococcus luteus 0.130709370
## PDB:Proteus mirabilis-Czapeck:Micrococcus luteus 0.304042704
## Sabouraud:Proteus mirabilis-Czapeck:Micrococcus luteus -0.159290630
## Czapeck:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.450709370
## Malta:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.060709370
## PDB:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.324042704
## Sabouraud:Streptococcus pyogenes-Czapeck:Micrococcus luteus -0.079290630
## PDB:Micrococcus luteus-Malta:Micrococcus luteus 0.627376037
## Sabouraud:Micrococcus luteus-Malta:Micrococcus luteus 0.120709370
## Czapeck:Proteus mirabilis-Malta:Micrococcus luteus 0.810709370
## Malta:Proteus mirabilis-Malta:Micrococcus luteus 0.384042704
## PDB:Proteus mirabilis-Malta:Micrococcus luteus 0.557376037
## Sabouraud:Proteus mirabilis-Malta:Micrococcus luteus 0.094042704
## Czapeck:Streptococcus pyogenes-Malta:Micrococcus luteus 0.704042704
## Malta:Streptococcus pyogenes-Malta:Micrococcus luteus 0.314042704
## PDB:Streptococcus pyogenes-Malta:Micrococcus luteus 0.577376037
## Sabouraud:Streptococcus pyogenes-Malta:Micrococcus luteus 0.174042704
## Sabouraud:Micrococcus luteus-PDB:Micrococcus luteus -0.119290630
## Czapeck:Proteus mirabilis-PDB:Micrococcus luteus 0.570709370
## Malta:Proteus mirabilis-PDB:Micrococcus luteus 0.144042704
## PDB:Proteus mirabilis-PDB:Micrococcus luteus 0.317376037
## Sabouraud:Proteus mirabilis-PDB:Micrococcus luteus -0.145957296
## Czapeck:Streptococcus pyogenes-PDB:Micrococcus luteus 0.464042704
## Malta:Streptococcus pyogenes-PDB:Micrococcus luteus 0.074042704
## PDB:Streptococcus pyogenes-PDB:Micrococcus luteus 0.337376037
## Sabouraud:Streptococcus pyogenes-PDB:Micrococcus luteus -0.065957296
## Czapeck:Proteus mirabilis-Sabouraud:Micrococcus luteus 1.077376037
## Malta:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.650709370
## PDB:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.824042704
## Sabouraud:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.360709370
## Czapeck:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.970709370
## Malta:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.580709370
## PDB:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.844042704
## Sabouraud:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.440709370
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis -0.039290630
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis 0.134042704
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis -0.329290630
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.280709370
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.109290630
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.154042704
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis -0.249290630
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.560709370
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis 0.097376037
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis 0.707376037
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis 0.317376037
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis 0.580709370
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis 0.177376037
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis -0.075957296
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis 0.534042704
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis 0.144042704
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis 0.407376037
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis 0.004042704
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.997376037
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.607376037
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.870709370
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.467376037
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.002623963
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.260709370
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes -0.142623963
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.650709370
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.247376037
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes -0.015957296
## p adj
## Malta:Micrococcus luteus-Czapeck:Micrococcus luteus 0.4668806
## PDB:Micrococcus luteus-Czapeck:Micrococcus luteus 1.0000000
## Sabouraud:Micrococcus luteus-Czapeck:Micrococcus luteus 0.0028854
## Czapeck:Proteus mirabilis-Czapeck:Micrococcus luteus 0.8993807
## Malta:Proteus mirabilis-Czapeck:Micrococcus luteus 0.4483873
## PDB:Proteus mirabilis-Czapeck:Micrococcus luteus 0.9996006
## Sabouraud:Proteus mirabilis-Czapeck:Micrococcus luteus 0.0015873
## Czapeck:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.9999719
## Malta:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.1567496
## PDB:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.9999719
## Sabouraud:Streptococcus pyogenes-Czapeck:Micrococcus luteus 0.0093983
## PDB:Micrococcus luteus-Malta:Micrococcus luteus 0.5432026
## Sabouraud:Micrococcus luteus-Malta:Micrococcus luteus 0.3948544
## Czapeck:Proteus mirabilis-Malta:Micrococcus luteus 0.0238515
## Malta:Proteus mirabilis-Malta:Micrococcus luteus 1.0000000
## PDB:Proteus mirabilis-Malta:Micrococcus luteus 0.8993807
## Sabouraud:Proteus mirabilis-Malta:Micrococcus luteus 0.2702537
## Czapeck:Streptococcus pyogenes-Malta:Micrococcus luteus 0.1859343
## Malta:Streptococcus pyogenes-Malta:Micrococcus luteus 0.9998813
## PDB:Streptococcus pyogenes-Malta:Micrococcus luteus 0.8189891
## Sabouraud:Streptococcus pyogenes-Malta:Micrococcus luteus 0.6980118
## Sabouraud:Micrococcus luteus-PDB:Micrococcus luteus 0.0038852
## Czapeck:Proteus mirabilis-PDB:Micrococcus luteus 0.8485877
## Malta:Proteus mirabilis-PDB:Micrococcus luteus 0.5238469
## PDB:Proteus mirabilis-PDB:Micrococcus luteus 0.9999245
## Sabouraud:Proteus mirabilis-PDB:Micrococcus luteus 0.0021408
## Czapeck:Streptococcus pyogenes-PDB:Micrococcus luteus 0.9998181
## Malta:Streptococcus pyogenes-PDB:Micrococcus luteus 0.1965625
## PDB:Streptococcus pyogenes-PDB:Micrococcus luteus 0.9999975
## Sabouraud:Streptococcus pyogenes-PDB:Micrococcus luteus 0.0125614
## Czapeck:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.0000648
## Malta:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.4123457
## PDB:Proteus mirabilis-Sabouraud:Micrococcus luteus 0.0179765
## Sabouraud:Proteus mirabilis-Sabouraud:Micrococcus luteus 1.0000000
## Czapeck:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.0006964
## Malta:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.8032379
## PDB:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.0116856
## Sabouraud:Streptococcus pyogenes-Sabouraud:Micrococcus luteus 0.9999951
## Malta:Proteus mirabilis-Czapeck:Proteus mirabilis 0.0222317
## PDB:Proteus mirabilis-Czapeck:Proteus mirabilis 0.4668806
## Sabouraud:Proteus mirabilis-Czapeck:Proteus mirabilis 0.0000362
## Czapeck:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.9964178
## Malta:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.0048524
## PDB:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.5822062
## Sabouraud:Streptococcus pyogenes-Czapeck:Proteus mirabilis 0.0002109
## PDB:Proteus mirabilis-Malta:Proteus mirabilis 0.8877845
## Sabouraud:Proteus mirabilis-Malta:Proteus mirabilis 0.2842167
## Czapeck:Streptococcus pyogenes-Malta:Proteus mirabilis 0.1757621
## Malta:Streptococcus pyogenes-Malta:Proteus mirabilis 0.9999245
## PDB:Streptococcus pyogenes-Malta:Proteus mirabilis 0.8032379
## Sabouraud:Streptococcus pyogenes-Malta:Proteus mirabilis 0.7165884
## Sabouraud:Proteus mirabilis-PDB:Proteus mirabilis 0.0101078
## Czapeck:Streptococcus pyogenes-PDB:Proteus mirabilis 0.9597050
## Malta:Streptococcus pyogenes-PDB:Proteus mirabilis 0.5238469
## PDB:Streptococcus pyogenes-PDB:Proteus mirabilis 1.0000000
## Sabouraud:Streptococcus pyogenes-PDB:Proteus mirabilis 0.0542062
## Czapeck:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.0003828
## Malta:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.6600245
## PDB:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.0065176
## Sabouraud:Streptococcus pyogenes-Sabouraud:Proteus mirabilis 0.9997276
## Malta:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.0474323
## PDB:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.9858437
## Sabouraud:Streptococcus pyogenes-Czapeck:Streptococcus pyogenes 0.0023068
## PDB:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.4123457
## Sabouraud:Streptococcus pyogenes-Malta:Streptococcus pyogenes 0.9706817
## Sabouraud:Streptococcus pyogenes-PDB:Streptococcus pyogenes 0.0361639plot(TukeyHSD(ANOVA))
#Prueba de Tukey
outHSD<-HSD.test(ANOVA, "FactorA",console=TRUE)##
## Study: ANOVA ~ "FactorA"
##
## HSD Test for CMI
##
## Mean Square Error: 0.01731389
##
## FactorA, means
##
## CMI std r se Min Max Q25 Q50 Q75
## Czapeck 1.1811111 0.14726205 9 0.04386075 0.96 1.36 1.08 1.23 1.28
## Malta 0.8244444 0.12778019 9 0.04386075 0.62 1.00 0.74 0.85 0.92
## PDB 1.0500000 0.13181426 9 0.04386075 0.89 1.30 0.94 1.07 1.10
## Sabouraud 0.5922222 0.07479602 9 0.04386075 0.50 0.75 0.55 0.58 0.63
##
## Alpha: 0.05 ; DF Error: 24
## Critical Value of Studentized Range: 3.901262
##
## Minimun Significant Difference: 0.1711123
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Czapeck 1.1811111 a
## PDB 1.0500000 a
## Malta 0.8244444 b
## Sabouraud 0.5922222 coutHSD<-HSD.test(ANOVA, "FactorB",console=TRUE)##
## Study: ANOVA ~ "FactorB"
##
## HSD Test for CMI
##
## Mean Square Error: 0.01731389
##
## FactorB, means
##
## CMI std r se Min Max Q25 Q50
## Micrococcus luteus 0.9066667 0.2605356 12 0.03798452 0.55 1.36 0.7250 0.925
## Proteus mirabilis 0.9241667 0.2923714 12 0.03798452 0.50 1.35 0.6275 0.960
## Streptococcus pyogenes 0.9050000 0.2356230 12 0.03798452 0.58 1.28 0.7300 0.915
## Q75
## Micrococcus luteus 1.0100
## Proteus mirabilis 1.1325
## Streptococcus pyogenes 1.0950
##
## Alpha: 0.05 ; DF Error: 24
## Critical Value of Studentized Range: 3.531697
##
## Minimun Significant Difference: 0.1341498
##
## Treatments with the same letter are not significantly different.
##
## CMI groups
## Proteus mirabilis 0.9241667 a
## Micrococcus luteus 0.9066667 a
## Streptococcus pyogenes 0.9050000 a