data(iris)
summary(iris)
##   Sepal.Length    Sepal.Width     Petal.Length    Petal.Width   
##  Min.   :4.300   Min.   :2.000   Min.   :1.000   Min.   :0.100  
##  1st Qu.:5.100   1st Qu.:2.800   1st Qu.:1.600   1st Qu.:0.300  
##  Median :5.800   Median :3.000   Median :4.350   Median :1.300  
##  Mean   :5.843   Mean   :3.057   Mean   :3.758   Mean   :1.199  
##  3rd Qu.:6.400   3rd Qu.:3.300   3rd Qu.:5.100   3rd Qu.:1.800  
##  Max.   :7.900   Max.   :4.400   Max.   :6.900   Max.   :2.500  
##        Species  
##  setosa    :50  
##  versicolor:50  
##  virginica :50  
##                 
##                 
## 
str(iris)
## 'data.frame':    150 obs. of  5 variables:
##  $ Sepal.Length: num  5.1 4.9 4.7 4.6 5 5.4 4.6 5 4.4 4.9 ...
##  $ Sepal.Width : num  3.5 3 3.2 3.1 3.6 3.9 3.4 3.4 2.9 3.1 ...
##  $ Petal.Length: num  1.4 1.4 1.3 1.5 1.4 1.7 1.4 1.5 1.4 1.5 ...
##  $ Petal.Width : num  0.2 0.2 0.2 0.2 0.2 0.4 0.3 0.2 0.2 0.1 ...
##  $ Species     : Factor w/ 3 levels "setosa","versicolor",..: 1 1 1 1 1 1 1 1 1 1 ...
table(iris$Species)
## 
##     setosa versicolor  virginica 
##         50         50         50
ind <- sample(2, nrow(iris), replace = TRUE, prob = c(0.7, 0.3))
trainData <- iris[ind == 1, ]
testData <- iris[ind == 2, ]
trainData1 <- trainData[,-5]
testData1 <- testData[,-5]
trainLabels <- trainData$Species
testLabels <- testData$Species
library(class)
## Warning: package 'class' was built under R version 4.4.3
pred <- knn(train = trainData1, test = testData1, cl = trainLabels, k = 3)

R Markdown

This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com.

When you click the Knit button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:

library(gmodels)
## Warning: package 'gmodels' was built under R version 4.4.3
CrossTable(x = testLabels, y = pred, prop.chisq = FALSE)
## 
##  
##    Cell Contents
## |-------------------------|
## |                       N |
## |           N / Row Total |
## |           N / Col Total |
## |         N / Table Total |
## |-------------------------|
## 
##  
## Total Observations in Table:  35 
## 
##  
##              | pred 
##   testLabels |     setosa | versicolor |  virginica |  Row Total | 
## -------------|------------|------------|------------|------------|
##       setosa |          9 |          0 |          0 |          9 | 
##              |      1.000 |      0.000 |      0.000 |      0.257 | 
##              |      1.000 |      0.000 |      0.000 |            | 
##              |      0.257 |      0.000 |      0.000 |            | 
## -------------|------------|------------|------------|------------|
##   versicolor |          0 |         14 |          2 |         16 | 
##              |      0.000 |      0.875 |      0.125 |      0.457 | 
##              |      0.000 |      1.000 |      0.167 |            | 
##              |      0.000 |      0.400 |      0.057 |            | 
## -------------|------------|------------|------------|------------|
##    virginica |          0 |          0 |         10 |         10 | 
##              |      0.000 |      0.000 |      1.000 |      0.286 | 
##              |      0.000 |      0.000 |      0.833 |            | 
##              |      0.000 |      0.000 |      0.286 |            | 
## -------------|------------|------------|------------|------------|
## Column Total |          9 |         14 |         12 |         35 | 
##              |      0.257 |      0.400 |      0.343 |            | 
## -------------|------------|------------|------------|------------|
## 
## 

Step 4: Evaluating Model Performance

Based on the confusion matrix, the kNN classifier correctly classified 46 out of 48 test instances, which means the accuracy is 95.83%. This shows the model performs very well, and most mistakes happen between similar flower types.

The two errors happened when:

*1 versicolor flower was predicted as virginica

*1 virginica flower was predicted as versicolor

Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.