Loess for distances vs. un-identified varieties

Regressions, EA level

## 
## ===================================================================================================
##                                                                     Dependent variable:            
##                                                          ------------------------------------------
##                                                           Share of un-identified cassava varieties 
##                                                               (1)            (2)           (3)     
## ---------------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research or trial center     -0.001                                
##                                                             (0.001)                                
##                                                                                                    
## Distance (in Km) to the nearest research center only                      -0.003***                
##                                                                            (0.001)                 
##                                                                                                    
## Distance (in Km) to the nearest trial center only                                       0.002***   
##                                                                                          (0.001)   
##                                                                                                    
## Constant                                                    0.563***      0.663***      0.438***   
##                                                             (0.048)        (0.056)       (0.040)   
##                                                                                                    
## ---------------------------------------------------------------------------------------------------
## Observations                                                  145            145           145     
## R2                                                           0.004          0.047         0.065    
## ===================================================================================================
## Note:                                                                   *p<0.1; **p<0.05; ***p<0.01
## 
## =======================================================================
##                                          Dependent variable:           
##                                ----------------------------------------
##                                Share of un-identified cassava varieties
## -----------------------------------------------------------------------
## Distance (in Km) to the border                -0.002***                
##                                                (0.001)                 
##                                                                        
## Constant                                       0.701***                
##                                                (0.046)                 
##                                                                        
## -----------------------------------------------------------------------
## Observations                                     145                   
## R2                                              0.123                  
## =======================================================================
## Note:                                       *p<0.1; **p<0.05; ***p<0.01

Auxiliary regression

## 
## ===============================================================================================================================================
##                                                                                         Dependent variable:                                    
##                                                      ------------------------------------------------------------------------------------------
##                                                      Residual (from a regression of share of un-identified varieties on distance to the border)
## -----------------------------------------------------------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research center only                                         -0.003***                                         
##                                                                                               (0.001)                                          
##                                                                                                                                                
## Constant                                                                                      0.140***                                         
##                                                                                               (0.052)                                          
##                                                                                                                                                
## -----------------------------------------------------------------------------------------------------------------------------------------------
## Observations                                                                                    145                                            
## R2                                                                                             0.063                                           
## ===============================================================================================================================================
## Note:                                                                                                               *p<0.1; **p<0.05; ***p<0.01
## Call:
## loess(formula = resid ~ min_dist_rsrch_km, data = unoma_cva_dist_ea)
## 
## Number of Observations: 145 
## Equivalent Number of Parameters: 4.74 
## Residual Standard Error: 0.2989
## `geom_smooth()` using formula = 'y ~ x'

Multivariate regressions

## 
## ==========================================================================================
##                                                            Dependent variable:            
##                                                 ------------------------------------------
##                                                  Share of un-identified cassava varieties 
##                                                      (1)            (2)           (3)     
## ------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research center   -0.003***      -0.003***     -0.003***  
##                                                    (0.001)        (0.001)       (0.001)   
##                                                                                           
## Distance (in Km) to the nearest trial center        0.001*         0.001         0.001    
##                                                    (0.001)        (0.001)       (0.001)   
##                                                                                           
## Distance (in Km) to the border                    -0.002***      -0.002**      -0.003***  
##                                                    (0.001)        (0.001)       (0.001)   
##                                                                                           
## Constant                                           0.766***      0.622***      0.930***   
##                                                    (0.078)        (0.136)       (0.138)   
##                                                                                           
## ------------------------------------------------------------------------------------------
## AEZ FE                                                No            Yes           No      
## Region FE                                             No            No            Yes     
## Observations                                         145            145           145     
## R2                                                  0.198          0.335         0.232    
## ==========================================================================================
## Note:                                                          *p<0.1; **p<0.05; ***p<0.01

Regressions, Plot Barcode Level

## 
## ====================================================================================================
##                                                                      Dependent variable:            
##                                                          -------------------------------------------
##                                                           Dummy for un-identified cassava varieties 
##                                                               (1)            (2)            (3)     
## ----------------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research or trial center     -0.001                                 
##                                                             (0.001)                                 
##                                                                                                     
## Distance (in Km) to the nearest research center only                      -0.002***                 
##                                                                            (0.0005)                 
##                                                                                                     
## Distance (in Km) to the nearest trial center only                                        0.001***   
##                                                                                          (0.0004)   
##                                                                                                     
## Constant                                                    0.575***       0.686***      0.496***   
##                                                             (0.024)        (0.030)        (0.020)   
##                                                                                                     
## ----------------------------------------------------------------------------------------------------
## Observations                                                 1,402          1,402          1,402    
## R2                                                           0.001          0.016          0.011    
## ====================================================================================================
## Note:                                                                    *p<0.1; **p<0.05; ***p<0.01
## 
## ========================================================================
##                                           Dependent variable:           
##                                -----------------------------------------
##                                Dummy for un-identified cassava varieties
## ------------------------------------------------------------------------
## Distance (in Km) to the border                 -0.003***                
##                                                (0.0003)                 
##                                                                         
## Constant                                       0.737***                 
##                                                 (0.023)                 
##                                                                         
## ------------------------------------------------------------------------
## Observations                                     1,402                  
## R2                                               0.063                  
## ========================================================================
## Note:                                        *p<0.1; **p<0.05; ***p<0.01

Multivariate regressions

## 
## ==========================================================================================
##                                                            Dependent variable:            
##                                                 ------------------------------------------
##                                                  Share of un-identified cassava varieties 
##                                                      (1)            (2)           (3)     
## ------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research center   -0.003***      -0.002***     -0.003***  
##                                                    (0.0005)       (0.001)       (0.001)   
##                                                                                           
## Distance (in Km) to the nearest trial center       0.001***       0.0004        0.0002    
##                                                    (0.0004)       (0.001)      (0.0004)   
##                                                                                           
## Distance (in Km) to the border                    -0.003***      -0.003***     -0.003***  
##                                                    (0.0003)      (0.0005)      (0.0004)   
##                                                                                           
## Constant                                           0.871***      0.771***      0.942***   
##                                                    (0.039)        (0.076)       (0.070)   
##                                                                                           
## ------------------------------------------------------------------------------------------
## AEZ FE                                                No            Yes           No      
## Region FE                                             No            No            Yes     
## Observations                                        1,402          1,402         1,402    
## R2                                                  0.094          0.143         0.123    
## ==========================================================================================
## Note:                                                          *p<0.1; **p<0.05; ***p<0.01

Subsample: closer to border (< 75Km)

Regressions

SLR: EA level

## 
## ===================================================================================================
##                                                                     Dependent variable:            
##                                                          ------------------------------------------
##                                                           Share of un-identified cassava varieties 
##                                                               (1)            (2)           (3)     
## ---------------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research or trial center     -0.001                                
##                                                             (0.002)                                
##                                                                                                    
## Distance (in Km) to the nearest research center only                       -0.002                  
##                                                                            (0.001)                 
##                                                                                                    
## Distance (in Km) to the nearest trial center only                                        0.002**   
##                                                                                          (0.001)   
##                                                                                                    
## Constant                                                    0.680***      0.732***      0.547***   
##                                                             (0.063)        (0.071)       (0.054)   
##                                                                                                    
## ---------------------------------------------------------------------------------------------------
## Observations                                                   82            82            82      
## R2                                                           0.007          0.026         0.060    
## ===================================================================================================
## Note:                                                                   *p<0.1; **p<0.05; ***p<0.01
## 
## =======================================================================
##                                          Dependent variable:           
##                                ----------------------------------------
##                                Share of un-identified cassava varieties
## -----------------------------------------------------------------------
## Distance (in Km) to the border                 -0.003**                
##                                                (0.001)                 
##                                                                        
## Constant                                       0.760***                
##                                                (0.062)                 
##                                                                        
## -----------------------------------------------------------------------
## Observations                                      82                   
## R2                                              0.062                  
## =======================================================================
## Note:                                       *p<0.1; **p<0.05; ***p<0.01

SLR: Plot Barcode level

## 
## ====================================================================================================
##                                                                      Dependent variable:            
##                                                          -------------------------------------------
##                                                           Dummy for un-identified cassava varieties 
##                                                               (1)            (2)            (3)     
## ----------------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research or trial center     -0.001                                 
##                                                             (0.001)                                 
##                                                                                                     
## Distance (in Km) to the nearest research center only                      -0.003***                 
##                                                                            (0.001)                  
##                                                                                                     
## Distance (in Km) to the nearest trial center only                                         0.001**   
##                                                                                          (0.0004)   
##                                                                                                     
## Constant                                                    0.693***       0.806***      0.614***   
##                                                             (0.031)        (0.040)        (0.026)   
##                                                                                                     
## ----------------------------------------------------------------------------------------------------
## Observations                                                  822            822            822     
## R2                                                           0.001          0.018          0.008    
## ====================================================================================================
## Note:                                                                    *p<0.1; **p<0.05; ***p<0.01
## 
## ========================================================================
##                                           Dependent variable:           
##                                -----------------------------------------
##                                Dummy for un-identified cassava varieties
## ------------------------------------------------------------------------
## Distance (in Km) to the border                 -0.003***                
##                                                 (0.001)                 
##                                                                         
## Constant                                       0.770***                 
##                                                 (0.030)                 
##                                                                         
## ------------------------------------------------------------------------
## Observations                                      822                   
## R2                                               0.021                  
## ========================================================================
## Note:                                        *p<0.1; **p<0.05; ***p<0.01

Multivariate regressions: EA level

## 
## ==========================================================================================
##                                                            Dependent variable:            
##                                                 ------------------------------------------
##                                                  Share of un-identified cassava varieties 
##                                                      (1)            (2)           (3)     
## ------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research center     -0.001        -0.002        -0.002    
##                                                    (0.001)        (0.001)       (0.001)   
##                                                                                           
## Distance (in Km) to the nearest trial center        0.001*        0.001*        0.001*    
##                                                    (0.001)        (0.001)       (0.001)   
##                                                                                           
## Distance (in Km) to the border                     -0.003*        -0.003*       -0.003*   
##                                                    (0.002)        (0.002)       (0.002)   
##                                                                                           
## Constant                                           0.724***      0.809***      0.809***   
##                                                    (0.097)        (0.243)       (0.243)   
##                                                                                           
## ------------------------------------------------------------------------------------------
## AEZ FE                                                No            Yes           No      
## Region FE                                             No            No            Yes     
## Observations                                          82            82            82      
## R2                                                  0.117          0.124         0.124    
## ==========================================================================================
## Note:                                                          *p<0.1; **p<0.05; ***p<0.01

Multivariate regressions: Plot Barcode Level

## 
## ==========================================================================================
##                                                            Dependent variable:            
##                                                 ------------------------------------------
##                                                  Share of un-identified cassava varieties 
##                                                      (1)            (2)           (3)     
## ------------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research center   -0.002***       -0.001*       -0.001*   
##                                                    (0.001)        (0.001)       (0.001)   
##                                                                                           
## Distance (in Km) to the nearest trial center       0.001***       0.0004        0.0004    
##                                                    (0.0004)      (0.0004)      (0.0004)   
##                                                                                           
## Distance (in Km) to the border                    -0.003***      -0.003***     -0.003***  
##                                                    (0.001)        (0.001)       (0.001)   
##                                                                                           
## Constant                                           0.823***      0.932***      0.932***   
##                                                    (0.047)        (0.096)       (0.096)   
##                                                                                           
## ------------------------------------------------------------------------------------------
## AEZ FE                                                No            Yes           No      
## Region FE                                             No            No            Yes     
## Observations                                         822            822           822     
## R2                                                  0.043          0.063         0.063    
## ==========================================================================================
## Note:                                                          *p<0.1; **p<0.05; ***p<0.01

Subsample: West Nile

Multivariate regressions: Plot Barcode Level

## 
## =========================================================================================
##                                                            Dependent variable:           
##                                                 -----------------------------------------
##                                                 Dummy for un-identified cassava varieties
## -----------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research center                 0.007***                 
##                                                                  (0.002)                 
##                                                                                          
## Distance (in Km) to the nearest trial center                      0.003                  
##                                                                  (0.002)                 
##                                                                                          
## Distance (in Km) to the border                                   0.0003                  
##                                                                  (0.003)                 
##                                                                                          
## Constant                                                        0.441***                 
##                                                                  (0.099)                 
##                                                                                          
## -----------------------------------------------------------------------------------------
## Observations                                                       195                   
## R2                                                                0.079                  
## =========================================================================================
## Note:                                                         *p<0.1; **p<0.05; ***p<0.01
Variety DNA data at 5% Threshold
Variety type Count
OFUMBA_CHAI 144
125
NAROCAS 1 122
NASE 19 114
MUREFU 43
NASE 3 43
BALI 33
NJULE-WHITE 30
BUKALASA-11 25
BAO 24
MERCURY 22
NASE12 20
IITA-TMS-IBA120067 18
TMEB14 15
KWATAMUMPALE 8
NASE 13 8
EDYAL 7
UG110114 6
MAGANA 3
NYARABOKE 3
MACHUNDE 2
NASE 1 2

SLR: Plot Barcode Level

## 
## ======================================================================================
##                                                               Dependent variable:     
##                                                          -----------------------------
##                                                              Dummy for EBL variety    
##                                                             (1)       (2)       (3)   
## --------------------------------------------------------------------------------------
## Distance (in Km) to the nearest research or trial center -0.002***                    
##                                                           (0.0003)                    
##                                                                                       
## Distance (in Km) to the nearest research center only                -0.0002           
##                                                                     (0.0003)          
##                                                                                       
## Distance (in Km) to the nearest trial center only                            -0.001***
##                                                                              (0.0002) 
##                                                                                       
## Constant                                                  0.155***  0.101*** 0.147*** 
##                                                           (0.014)   (0.017)   (0.012) 
##                                                                                       
## --------------------------------------------------------------------------------------
## Observations                                               1,402     1,402     1,402  
## R2                                                         0.023     0.0003    0.029  
## ======================================================================================
## Note:                                                      *p<0.1; **p<0.05; ***p<0.01
## 
## ==========================================================
##                                    Dependent variable:    
##                                ---------------------------
##                                   Dummy for EBL variety   
## ----------------------------------------------------------
## Distance (in Km) to the border          -0.00000          
##                                         (0.0002)          
##                                                           
## Constant                                0.091***          
##                                          (0.013)          
##                                                           
## ----------------------------------------------------------
## Observations                              1,402           
## R2                                       0.00000          
## ==========================================================
## Note:                          *p<0.1; **p<0.05; ***p<0.01

MLR: Plot Barcode Level

## 
## =============================================================================
##                                                      Dependent variable:     
##                                                 -----------------------------
##                                                     Dummy for EBL variety    
##                                                    (1)       (2)       (3)   
## -----------------------------------------------------------------------------
## Distance (in Km) to the nearest research center  0.0002   -0.00001   -0.0004 
##                                                 (0.0003)  (0.0003)  (0.0003) 
##                                                                              
## Distance (in Km) to the nearest trial center    -0.002*** -0.001*** -0.001** 
##                                                 (0.0002)  (0.0004)  (0.0002) 
##                                                                              
## Distance (in Km) to the border                  -0.0003*  -0.001*** -0.001***
##                                                 (0.0002)  (0.0003)  (0.0002) 
##                                                                              
## Constant                                        0.165***  0.430***  0.146*** 
##                                                  (0.023)   (0.043)   (0.040) 
##                                                                              
## -----------------------------------------------------------------------------
## AEZ FE                                             No        Yes       No    
## Region FE                                          No        No        Yes   
## Observations                                      1,402     1,402     1,402  
## R2                                                0.032     0.158     0.120  
## =============================================================================
## Note:                                             *p<0.1; **p<0.05; ***p<0.01