R Markdown

This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com.

When you click the Knit button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:

Patients <- c("patient1", "patient2", "patient3", "patient4")
IRX4 <- c(11,13,2,1)
OCT4 <-  c(10,13,4,3)
PAX6 <- c(1,3,10,9)


Gene <- data.frame(Patients, IRX4, OCT4, PAX6, stringsAsFactors = FALSE)
Gene
##   Patients IRX4 OCT4 PAX6
## 1 patient1   11   10    1
## 2 patient2   13   13    3
## 3 patient3    2    4   10
## 4 patient4    1    3    9
dist(Gene, method = "manhattan", diag = FALSE, upper = FALSE, p=2)
## Warning in dist(Gene, method = "manhattan", diag = FALSE, upper = FALSE, : NAs
## introduced by coercion
##           1         2         3
## 2  9.333333                    
## 3 32.000000 36.000000          
## 4 33.333333 37.333333  4.000000
dist(Gene, method = "euclidean", diag = FALSE, upper = FALSE, p=2)
## Warning in dist(Gene, method = "euclidean", diag = FALSE, upper = FALSE, : NAs
## introduced by coercion
##           1         2         3
## 2  4.760952                    
## 3 16.248077 18.293897          
## 4 16.852300 19.321836  2.000000

Including Plots

You can also embed plots, for example:

Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.